Metagenome / Metatranscriptome Family F075476

Basic Information
Family ID	F075476
Family Type	Metagenome / Metatranscriptome
Number of Sequences	119
Average Sequence Length	58 residues
Representative Sequence	PMSRFLLSAVAVGLVAGLAPGADPSPPPGTAVTPFHPLNVNGPAAGEKACPV
Number of Associated Samples	94
Number of Associated Scaffolds	119

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	24.56 %
% of genes near scaffold ends (potentially truncated)	68.07 %
% of genes from short scaffolds (< 2000 bps)	94.96 %
Associated GOLD sequencing projects	92
AlphaFold2 3D model prediction	No

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Unclassified (89.916 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (31.092 % of family members)
Environment Ontology (ENVO)	Unclassified (35.294 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (38.655 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98.100 1E41_02536650 2C688J35102_1183828051 3Ga0006778J45830_10180431 4Ga0006770J48903_10177811 5Ga0006777J48905_10276911 6Ga0006781J51513_10130351 7Ga0007420J51693_10104031 8Ga0007418J51697_10242701 9Ga0007419J51692_10358641 10Ga0007424J51698_10174701 11Ga0007412J51696_10196981 12Ga0007410J51695_10374731 13Ga0007409J51694_10223381 14Ga0032354_10363211 15Ga0058858_14131513 16Ga0058859_100595731 17Ga0058860_100399112 18Ga0070670_1015435642 19Ga0070671_1004347712 20Ga0070674_1017297072 21Ga0066670_106382502 22Ga0066903_1008386923 23Ga0066903_1047492083 24Ga0070717_100231931 25Ga0126307_109131092 26Ga0127492_10865092 27Ga0127500_10538492 28Ga0127494_11301392 29Ga0127444_11204071 30Ga0127465_10687122 31Ga0127479_10927161 32Ga0127493_11630642 33Ga0126320_12582692 34Ga0126320_14691251 35Ga0126320_14972362 36Ga0126318_110880182 37Ga0127503_109775272 38Ga0134124_125095471 39Ga0126317_101955931 40Ga0127502_100033032 41Ga0127502_100106601 42Ga0127502_106139942 43Ga0127502_108380371 44Ga0127502_109326941 45Ga0150985_1006362471 46Ga0150985_1034088361 47Ga0150985_1207649422 48Ga0150985_1227555591 49Ga0134034_10706432 50Ga0134036_12881181 51Ga0134040_12605762 52Ga0134054_12520892 53Ga0134061_10681202 54Ga0134053_14367032 55Ga0134060_12109792 56Ga0150984_1022564871 57Ga0150984_1049034042 58Ga0150984_1080638332 59Ga0164300_107620872 60Ga0164305_109100642 61Ga0132255_1019395052 62Ga0190269_117327832 63Ga0066662_107955942 64Ga0180108_10957912 65Ga0197907_107931922 66Ga0206349_18251511 67Ga0206355_12420952 68Ga0206352_105315141 69Ga0222624_11187571 70Ga0213857_10219551 71Ga0224712_104542712 72Ga0247823_101526703 73Ga0307297_103975512 74Ga0308205_10349192 75Ga0308202_10862732 76Ga0308202_10916041 77Ga0308202_10996202 78Ga0308206_10944381 79Ga0308206_11183542 80Ga0308200_10851161 81Ga0308200_11646102 82Ga0308154_1165072 83Ga0308183_11085741 84Ga0308190_10944782 85Ga0308189_102867711 86Ga0308189_103827511 87Ga0308192_10502221 88Ga0308201_102401252 89Ga0308201_103986751 90Ga0308201_104228082 91Ga0308204_102524492 92Ga0308197_103132961 93Ga0308197_103694922 94Ga0308193_10502662 95Ga0308181_11397852 96Ga0308181_11695071 97Ga0308180_10207241 98Ga0308187_104093581 99Ga0308151_10259241 100Ga0308151_10472062 101Ga0308182_10183042 102Ga0308194_101816832 103Ga0308186_10295272 104Ga0308176_117638721 105Ga0370544_11383_16_171 106Ga0370548_102313_2_160 107Ga0314780_137312_406_561 108Ga0314782_163052_430_555 109Ga0314783_079024_407_667 110Ga0314786_141302_1_156 111Ga0314793_090108_59_214 112Ga0314793_134030_405_545 113Ga0314794_092753_56_211 114Ga0314795_079368_2_208 115Ga0314795_138761_405_518 116Ga0314798_117930_3_266 117Ga0314798_160816_319_519 118Ga0314803_090904_403_585 119Ga0370541_050791_1_213
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98.100 1E41_02536650 2Ga0006777J48905_10276911 3Ga0127492_10865092 4Ga0134124_125095471 5Ga0127502_100106601 6Ga0127502_108380371 7Ga0127502_109326941 8Ga0150985_1034088361 9Ga0150985_1227555591 10Ga0314783_079024_407_667 11Ga0314793_134030_405_545
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98.100 1E41_02536650 2Ga0006777J48905_10276911 3Ga0127492_10865092 4Ga0134124_125095471 5Ga0127502_100106601 6Ga0127502_108380371 7Ga0127502_109326941 8Ga0150985_1034088361 9Ga0150985_1227555591 10Ga0314783_079024_407_667 11Ga0314793_134030_405_545
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Neighboring Clusters of Orthologous Genes (COGs)

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 25.00% β-sheet: 0.00% Coil/Unstructured: 75.00%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Pfam ID	Name	% Frequency in 119 Family Scaffolds
PF14499	DUF4437	2.52
PF14117	DUF4287	0.84
PF02576	RimP_N	0.84
PF02537	CRCB	0.84

COG ID	Name	Functional Category	% Frequency in 119 Family Scaffolds
COG0239	Fluoride ion exporter CrcB/FEX, affects chromosome condensation	Cell cycle control, cell division, chromosome partitioning [D]	0.84
COG0779	Ribosome maturation factor RimP	Translation, ribosomal structure and biogenesis [J]	0.84

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	10.08 %
Unclassified	root	N/A	89.92 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	10.08 %
Unclassified	root	N/A	89.92 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	10.08 %
Unclassified	root	N/A	89.92 %

Name	Rank	Taxonomy	Distribution
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	3.36 %
Unclassified	root	N/A	89.92 %

Name	Rank	Taxonomy	Distribution
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	3.36 %
Unclassified	root	N/A	89.92 %

Name	Rank	Taxonomy	Distribution
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	3.36 %
Unclassified	root	N/A	89.92 %

Name	Rank	Taxonomy	Distribution
Gemmatales	order	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales	3.36 %
Unclassified	root	N/A	89.92 %

Name	Rank	Taxonomy	Distribution
Gemmataceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae	3.36 %
Unclassified	root	N/A	89.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.92 %
Zavarzinella	genus	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae → Zavarzinella	1.68 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.92 %
unclassified Zavarzinella	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae → Zavarzinella → unclassified Zavarzinella	0.84 %
Zavarzinella formosa	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae → Zavarzinella → Zavarzinella formosa	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.92 %
Zavarzinella formosa	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae → Zavarzinella → Zavarzinella formosa	0.84 %
Zavarzinella sp.	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae → Zavarzinella → unclassified Zavarzinella → Zavarzinella sp.	0.84 %

Scaffold	Taxonomy	Length	IMG/M Link
2170459005\|F1BAP7Q02G8J6J	All Organisms → cellular organisms → Bacteria	603	Open in IMG/M
3300002568\|C688J35102_118382805	Not Available	554	Open in IMG/M
3300003162\|Ga0006778J45830_1018043	Not Available	609	Open in IMG/M
3300003305\|Ga0006770J48903_1017781	Not Available	579	Open in IMG/M
3300003308\|Ga0006777J48905_1027691	Not Available	584	Open in IMG/M
3300003568\|Ga0006781J51513_1013035	Not Available	624	Open in IMG/M
3300003569\|Ga0007420J51693_1010403	Not Available	546	Open in IMG/M
3300003570\|Ga0007418J51697_1024270	Not Available	568	Open in IMG/M
3300003571\|Ga0007419J51692_1035864	Not Available	566	Open in IMG/M
3300003572\|Ga0007424J51698_1017470	Not Available	621	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	78.15%
Host-Associated	Host-Associated	21.85%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	11.76%
Human	Host-Associated → Human	2.52%
Plants	Host-Associated → Plants	19.33%
Terrestrial	Environmental → Terrestrial	66.39%

Habitat	Taxonomy	Distribution
Digestive System	Host-Associated → Human → Digestive System	2.52%
Freshwater	Environmental → Aquatic → Freshwater	11.76%
Rhizoplane	Host-Associated → Plants → Rhizoplane	10.08%
Rhizosphere	Host-Associated → Plants → Rhizosphere	9.24%
Soil	Environmental → Terrestrial → Soil	66.39%

Habitat	Taxonomy	Distribution
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	9.24%
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	2.52%
Loam	Environmental → Terrestrial → Soil → Loam	3.36%
Sediment	Environmental → Aquatic → Freshwater → Sediment	2.52%
Soil	Host-Associated → Plants → Rhizosphere → Soil	9.24%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	63.03%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	10.08%

Habitat	Taxonomy	Distribution
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	11.76%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.84%
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	2.52%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.68%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.52%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.84%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	48.74%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	10.08%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	9.24%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	9.24%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	2.52%

Habitat	Taxonomy	Distribution
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.84%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	9.24%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	6.72%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	4.20%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.84%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.84%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	11.76%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.84%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	1.68%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	2.52%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.84%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.84%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	31.09%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	11.76%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	9.24%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.84%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.84%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.68%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.84%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.68%
Watersheds	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds	0.84%

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459005	Grass soil microbial communities from Rothamsted Park, UK - July 2009 direct MP BIO1O1 lysis 0-21cm	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300003162	Avena fatua rhizosphere microbial communities - H4_Rhizo_Litter_21 (Metagenome Metatranscriptome, Counting Only)	Host-Associated	Open in IMG/M
3300003305	Avena fatua rhizosphere microbial communities - H3_Rhizo_Litter_13 (Metagenome Metatranscriptome, Counting Only)	Host-Associated	Open in IMG/M
3300003308	Avena fatua rhizosphere microbial communities - H4_Rhizo_Litter_20 (Metagenome Metatranscriptome, Counting Only)	Host-Associated	Open in IMG/M
3300003568	Avena fatua rhizosphere microbial communities - H4_Bulk_Litter_24 (Metagenome Metatranscriptome, Counting Only)	Host-Associated	Open in IMG/M
3300003569	Grassland soil microbial communities from Hopland, California, USA - Sample H2_Bulk_36 (Metagenome Metatranscriptome, Counting Only)	Host-Associated	Open in IMG/M
3300003570	Grassland soil microbial communities from Hopland, California, USA - Sample H2_Bulk_34 (Metagenome Metatranscriptome, Counting Only)	Host-Associated	Open in IMG/M
3300003571	Grassland soil microbial communities from Hopland, California, USA - Sample H2_Bulk_35 (Metagenome Metatranscriptome, Counting Only)	Host-Associated	Open in IMG/M
3300003572	Grassland soil microbial communities from Hopland, California, USA - Sample H3_Bulk_40 (Metagenome Metatranscriptome, Counting Only)	Host-Associated	Open in IMG/M

Showing 1 to 10 of 94 entries

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
E41_02536650	2170459005	Grass Soil	MNRFLLSAVAVGLVAGLAPGADPSPPPGTAVTPFHPLNVNGPAAGEKACPV
C688J35102_1183828051	3300002568	Soil	PMSRFLLSAVAVGLVAGLAPGADPSPPPGTAVTPFHPLNVNGPAAGEKACPV*
Ga0006778J45830_10180431	3300003162	Avena Fatua Rhizosphere	ILPVRYPKGVFPMSRFLLSAVAVGLVAGLAPGADPSPSPGTAVTPFHPLNVNGPAAGEKACPV*
Ga0006770J48903_10177811	3300003305	Avena Fatua Rhizosphere	FPMSRFLLSAVAVGLVAGLAPGADPSPPPGTAVTPFHPLNVNGPAAGEKACPV*
Ga0006777J48905_10276911	3300003308	Avena Fatua Rhizosphere	AMVLSIPVTYPKGVSPMSRFLLSAVAVGLVAGLAPGADPSPAPGTAVTPFHPLNVNGPAAGEKACPV*
Ga0006781J51513_10130351	3300003568	Avena Fatua Rhizosphere	MSRFLLSAVAVGLVAGLAPGADPSPPPGTAVTPFHPLNVNGPAAGEKACPV*
Ga0007420J51693_10104031	3300003569	Avena Fatua Rhizosphere	VGLMAGLAPGADPSPSPGTAVTPFHPLNVNGPAAGEKACPV*
Ga0007418J51697_10242701	3300003570	Avena Fatua Rhizosphere	SRFLLSAVAVGLVAGLAPGADPSPSPGTAVTPFHPLNVNGPAAGEKACPV*
Ga0007419J51692_10358641	3300003571	Avena Fatua Rhizosphere	LLSAVAVGLVAGLAPGADPSPSPGTAVTPFHPLNVNGPAAGEKACPV*
Ga0007424J51698_10174701	3300003572	Avena Fatua Rhizosphere	SFHPSREVPKGVFPMSRFLLSAVAVGLVAGLAPGADPSPSPGTAVTPFHPLNVNGPAAGEKACPV*
Ga0007412J51696_10196981	3300003573	Avena Fatua Rhizosphere	ASRSFHPSREVPKGVFPMSRFLLSAVAVGLVAGLAPGADPSPSPGTAVTPFHPLNVNGPAAGEKACPV*
Ga0007410J51695_10374731	3300003574	Avena Fatua Rhizosphere	GSFIPPVRYPKGAFAMSRFLLSAVAVGLVAGLAPGADPSPPPGTAVTPFHPLNVNGPAAGEKACPV*
Ga0007409J51694_10223381	3300003575	Avena Fatua Rhizosphere	AVGLVAGLAPGADPSPPPGTAVTPFHPLNVNGPAAGEKACPV*
Ga0032354_10363211	3300003693	Avena Fatua Rhizosphere	RPASRFIHPSREVPKGVFAMSRFLLSAVAVGLVAGLAPGADPSPTPGTSVTPFHPLNVNGPAAGEKACPV*
Ga0058858_14131513	3300004785	Host-Associated	LDRSSQPPVRYSKGEFPMSRFLLSAVAVGLVAGLAPGADPSPAPGTAVTPFHPLNVNGPAAGEKACPV*
Ga0058859_100595731	3300004798	Host-Associated	PVRYSKGEFPMSRFLLSAVAVGLVAGLAPGADPSPPPGTAVTPFHPLNVNGPAAGEKACPV*
Ga0058860_100399112	3300004801	Host-Associated	PKGVFPMSRFLLSAVAVGLVAGLAPGAEPSPPPGTPVTPFHPLNVNGPSAGEKTCPV*
Ga0070670_1015435642	3300005331	Switchgrass Rhizosphere	VRYPKGVFPMSRFLLSAVAVGLVAGLTPGADPSPPPGTAVTPFHPLNVNGPAAGEKACPV
Ga0070671_1004347712	3300005355	Switchgrass Rhizosphere	MSRFLLSAVVVGLVAGLAPGAEPSPPPGTPVTPFHPLNVNGPAAGEKACPV*
Ga0070674_1017297072	3300005356	Miscanthus Rhizosphere	MSRFLLSAVAVGLVAGLAPGADPSPAPGTAVTPFHPLNVNGPAAGEKACPV*
Ga0066670_106382502	3300005560	Soil	MSRFLLSAVAVGLVAGLAPGAEPSPPPGTPVTPFHPLNVNGPSAGEKTCPV*
Ga0066903_1008386923	3300005764	Tropical Forest Soil	MSRFLLSAVAVGLVAGLAPGAEPSPSPGTAVTPFHPLNVNGPAAGEKACPV*
Ga0066903_1047492083	3300005764	Tropical Forest Soil	MSRFLLSAVAVGLVAGLAPGAEPSPPPGTPVTPFHPLNVNGPAAGEKACPV*
Ga0070717_100231931	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MSRFLLSAVAVGLVAALAPGAEPSPSPGTAVTPFHPLNVNGPAAGEKACPV*
Ga0126307_109131092	3300009789	Serpentine Soil	MSRFLLSAVAVGLVAGLAPGAEPSPAPGTAVTPFHPLHVNGAHAGEKACAV*
Ga0127492_10865092	3300010087	Grasslands Soil	AGLAPGAEPSPPPGTPVTPFHPLNVDGPAAGEKACPV*
Ga0127500_10538492	3300010103	Grasslands Soil	MSRYLLSAVAVGLMAGLAPGAEPSPSPGTAVTPFHPLNVNGPAAGEKACPV*
Ga0127494_11301392	3300010107	Grasslands Soil	DGSFIPPVRYPKGAFAMSRFLFSAVAVGLVAGLAPGADPSPPPGTAVTPFHPLNVNGPAAGEKACPV*
Ga0127444_11204071	3300010113	Grasslands Soil	TRDGSFIPPVRYPKGAFAMSRFLLSAVAVGLVAGLAPGADPSPPPGTAVTPFHPLNVNGPAAGEKACPV*
Ga0127465_10687122	3300010118	Grasslands Soil	VLSIPVTYPKGVSPMSRFLLSAVAVGLVAGLAPGADPSPPPGTAVTPFHPLNVNGPAAGEKACPV*
Ga0127479_10927161	3300010123	Grasslands Soil	PPVRYPKGVFAMSRFLLSAVAVGLMAGLAPGAEPSPSPGTAVTPFHPLNVNGPAAGEKACPV*
Ga0127493_11630642	3300010130	Grasslands Soil	SRHFPFIPPVRYPKGVFAMSRFLLSAVAVGLMAGLAPGAEPSPPPGTAVTPFHPLNVNGPAAGEKACPV*
Ga0126320_12582692	3300010146	Soil	MSRFLLSAVAVGLVAGLSPGAEPSPAPGTAVTPFHPLNVNGPAAGEKACPV*
Ga0126320_14691251	3300010146	Soil	LASRFIHPSREVPKGVFEMSRFLLSAVAVGLVAGLAPGAEPSPPPGTPVTPFHPLNVNGPAAGEKACPV*
Ga0126320_14972362	3300010146	Soil	LSAVAVGLVAGLAPGAEPSPPPGTPVTPFHPLHVNGPSAGEKACAV*
Ga0126318_110880182	3300010152	Soil	MSRFLITAVAVGLMAGCAPGAEPSPSPGTPVTPFDPLHVNGPAAGEKACPV*
Ga0127503_109775272	3300010154	Soil	ADFQFPNPVRYPKGVFPMSRFLLSTVAIGLLAGLAPGAEPSPNPGTAVTPFHPLNVNGPAAGEKACPV*
Ga0134124_125095471	3300010397	Terrestrial Soil	LCIHPSREVPKGVFAMSRYLLSAVAVGLMAGLAPGAEPSPSPGTPVTPFHPLNVNGPAAGEKACPV*
Ga0126317_101955931	3300011332	Soil	LASPSFPPSREVPKGVFPMSRFLLSAVAVGLVAGLAPGADPSPAPGTAVTPFHPLNVNGPAAGEKACPV*
Ga0127502_100033032	3300011333	Soil	MSRFLLSAVAVGLVAGLAPGAEPSPPVGTSVTPFHPLHVTGPKAGEKACAV*
Ga0127502_100106601	3300011333	Soil	FNSPVRYPPKGVSPMSRFLLSAVAVGLVAGLAPGAEPSPPVGTAVTPFHPLHVNGKSAGEKACAV*
Ga0127502_106139942	3300011333	Soil	MSRYLLPAVAAGLFAGFALPADPSPSPGTAVKPFHPLNVNGPAAGDKACPV*
Ga0127502_108380371	3300011333	Soil	HTNRAVPASREFVQLSREVQPKGVFPMSRFLLSAVAIGLVAGLAPGAEPSPEPGTAVTPFHPLHVNGAHAGEKACAV*
Ga0127502_109326941	3300011333	Soil	AVGLVAGLAPGAEPSPAPGTAVTPFHPLHVNGAHAGEKACAV*
Ga0150985_1006362471	3300012212	Avena Fatua Rhizosphere	MSRFLLSAVAVGLVAGLAPGAEPSPPPGTPVTPFHPLHVNGPSAGEKACAV*
Ga0150985_1034088361	3300012212	Avena Fatua Rhizosphere	RPASRFIHPSREVPKGVFEMSRFLLSAVAVGLVVGLAPGAEPSPKPGTSVTPFHPLNVNGPAAGDKACPV*
Ga0150985_1207649422	3300012212	Avena Fatua Rhizosphere	MRRFLFSVVAVGLLAGLAPGADPSPPPGTAVTPFHPLNVNGPAAGEKTCPV*
Ga0150985_1227555591	3300012212	Avena Fatua Rhizosphere	GVSNPTREEIEGTNPMNRFLLSAVAVGLMVGLAPGAEPSPPPGTPVTPFHPLNVNGPAAGEKACPV*
Ga0134034_10706432	3300012375	Grasslands Soil	SLPSIPPVRYLKGVFPMSRFLLSAVAVGLVAGLAPGADPSPPPGTAVTPFHPLNVNGPAAGEKACPV*
Ga0134036_12881181	3300012384	Grasslands Soil	ASRRIRNILPVRYSKGVFPMSRFLLSAVAVGLMAGLAPGAEPSPSPGTPVTPFHPLNVNGPAAGEKACPV*
Ga0134040_12605762	3300012389	Grasslands Soil	SFIPPVRYPKGAFAMSRFLLSAVAVGLVAGLAPGADPSPPPGTAVTPFHPLNVNGPAAGEKACPV*
Ga0134054_12520892	3300012390	Grasslands Soil	APGAEPSPSPGTPVTPFHPLNVNGPAAGEKACPV*
Ga0134061_10681202	3300012399	Grasslands Soil	VPASRHFPFIPPVRYPKGVFAMSRFLLSAVAVGLVAGLAPGADPSPPPGTAVTPFHPLNVNGPAAGEKACPV*
Ga0134053_14367032	3300012406	Grasslands Soil	MSRFLLSAVAVGLMAGLAPGAEPSPPPGTAVTPFHPLNVNGPSAGEKACPV*
Ga0134060_12109792	3300012410	Grasslands Soil	ASRSIPSIPPVRYPKGVFPMSRFLLSAVAVGLVAGLAPGADPSPPPGTAVTPFHPLNVNGPAAGEKACPV*
Ga0150984_1022564871	3300012469	Avena Fatua Rhizosphere	VCSSDLASRRIRNILPVRYSKGVFPMSRFLLSAVAVGLMAGLAPGAEPSPSPGTPVTPFHPLNVNGPAAGEKACPV*
Ga0150984_1049034042	3300012469	Avena Fatua Rhizosphere	FPMSRFLLSAVAVGLVAGLAPGAEPSPPPGTPVTPFHPLHVNGPSAGEKACAV*
Ga0150984_1080638332	3300012469	Avena Fatua Rhizosphere	MSRFLLSAVAVGLVAGLAPGAEPSPKPGTSVTPFHPLNVNGPAAGDKACPV*
Ga0164300_107620872	3300012951	Soil	MSRFLLSAVAVGLVAGLAPGADPSPAPGTPVTPFHPLNVNGPAAGEKACPV*
Ga0164305_109100642	3300012989	Soil	MVLSIPVTYPKGVYPMSRFLLSAVAVGLVAGLAPGAEPSPAPGTAVTPFHPLNVNGPAAGEKACPV*
Ga0132255_1019395052	3300015374	Arabidopsis Rhizosphere	MTVPASRPIPSLLPVRSPKGVFPMSRFLLSAVAVGLVAGLAPGADPSPAPGTAVTPFHPLNVNGPAAGEKACPV*
Ga0190269_117327832	3300018465	Soil	MSRFLLSAVAVGLVAGLAPGAEPSPPVGTAVTPFHPLHVNGPSAGEKACAV
Ga0066662_107955942	3300018468	Grasslands Soil	MSRFLLSAVAVGLVAGLAPGAEPSPPPGTPVTPFHPLNVNGPAAGEKACPV
Ga0180108_10957912	3300020066	Groundwater Sediment	MSRFLLSAVAVGLVAGLAPGAEPSPAPGTAVTPFHPLHVNGPSAGEKACAV
Ga0197907_107931922	3300020069	Corn, Switchgrass And Miscanthus Rhizosphere	LLVTVPSIFPVRPLKGAFPMSRFLLSAVAVGLVAGLAPGAEPSPSPGTAVTPFHPLNVNGPAAGEKACPV
Ga0206349_18251511	3300020075	Corn, Switchgrass And Miscanthus Rhizosphere	PMSRFLLSAVAVGLVAGLAPGAEPSPSPGTAVTPFHPLNVNGPAAGEKACPV
Ga0206355_12420952	3300020076	Corn, Switchgrass And Miscanthus Rhizosphere	LVTVPSIFPVRPLKGAFPMSRFLLSAVAVGLVAGLAPGAEPSPSPGTAVTPFHPLNVNGPAAGEKACPV
Ga0206352_105315141	3300020078	Corn, Switchgrass And Miscanthus Rhizosphere	HIPSTLPVRYPKGVFPMSRFLLSAVAVGLVAGLAPGADPSPAPGTPVTPFHPLNVNGPAAGEKACPV
Ga0222624_11187571	3300021951	Groundwater Sediment	MSRFLLSAVAVGLVAGLAPGADPSPSPGTVVTPFHPLNVNGPAAGEKACPV
Ga0213857_10219551	3300022171	Watersheds	SCSSIPPVSQTKGTNPMSRFLLSAVAVGLMAGLAPGAEPSPPPGTAVTPFHPLNVNGPAAGEKACPV
Ga0224712_104542712	3300022467	Corn, Switchgrass And Miscanthus Rhizosphere	VTVPSIFPVRPLKGAFPMSRFLLSAVAVGLVAGLAPGAEPSPSPGTAVTPFHPLNVNGPAAGEKACPV
Ga0247823_101526703	3300028590	Soil	MSRYLLPAVAAGLFAGFALPADPSPSPGTAVKPFHPLNVNGPAAGDKACPV
Ga0307297_103975512	3300028754	Soil	MSRFLMSAVAVGLVAGLAPGAEPSPPPGTSVTPFHPLHVNGPKAGEKACAV
Ga0308205_10349192	3300030830	Soil	ASRVRFNSPVRYPPKGVSPMSRFLLSAVAVGLVAGLAPGAEPSPPVGTAVTPFHPLHVNGPSAGEKACAV
Ga0308202_10862732	3300030902	Soil	RVESSFLLSREVQPKGVFPMSRFLLSAVAVGLVAGLAPGADPSPSPGTAVTPFHPLHVNGPSAGEKACAV
Ga0308202_10916041	3300030902	Soil	GFVQISREVQPKGVFPMSRLLLSAVAIGLVAGLAPGAEPSPEPGTPVTPFHPLHVNGAHAGEKACAV
Ga0308202_10996202	3300030902	Soil	VRYPKGVSPMSRFLLSAVAVGLVAGLAPGADPSPPPGTAVTPFHPLNVNGPAAGEKACPV
Ga0308206_10944381	3300030903	Soil	GLALPAPGGHTNHAVPASRGFVQISREVQPKGVFPMSRFLLSAVAIGLVAGLAPGAEPSPEPGTPVTPFHPLHVNGAHAGEKACAV
Ga0308206_11183542	3300030903	Soil	SREVQPKGVFPMSRFLLSAVAVGLVAGLAPGADPSPSPGTAVTPFHPLHVNGPSAGEKACAV
Ga0308200_10851161	3300030905	Soil	GGHTNHAVPASRGFVQISREVQPKGVFPMSRFLLSAVAIGLVAGLAPGAEPSPEPGTPVTPFHPLHVNGAHAGEKACAV
Ga0308200_11646102	3300030905	Soil	LAPGADPSPSPGTAVTPFHPLNVNGPAAGEKACPV
Ga0308154_1165072	3300030986	Soil	GLAPGADPSPSPGTAVTPFHPLNVNGPAAGEKACPV
Ga0308183_11085741	3300030988	Soil	PDGPTPPVRSLKGTIPMSRFLMSAVAVGLVAGLAPGAEPSPPPGTAVTPFHPLHVNGPKAGEKACAV
Ga0308190_10944782	3300030993	Soil	MSRFLLSAVAVGLVAGLAPGADPSPPPGTAVTPFHPLNVNGPAAGEKACPV
Ga0308189_102867711	3300031058	Soil	SRSVPSIPPVRYPKGVSPMSRFLLSAVAVGLVAGLAPGADPSPPPGTAVTPFHPLNVNGPAAGEKACPV
Ga0308189_103827511	3300031058	Soil	ASRGFVQISREVQPKGVFPMSRFLLSAVAIGLVAGLAPGAEPSPEPGTPVTPFHPLHVNGAHAGEKACAV
Ga0308192_10502221	3300031082	Soil	SRPVPSIPPVRYPKGVFPMSRFLLSAVAVGLVAGLAPGADPSPPPGTAVTPFHPLNVNGPAAGEKACPV
Ga0308201_102401252	3300031091	Soil	AMVRSIPVTYPKGVSPMSRFLLSAVAVGLVAGLAPGAEPSPAPGTAVTPFHPLNVNGPAAGEKACPV
Ga0308201_103986751	3300031091	Soil	LAPGAEPSPPPGTPVTPFHPLNVNGPSAGEKACPV
Ga0308201_104228082	3300031091	Soil	AVGLVAGLAPGAEPSPAPGTSVTPFHPLNVNGPAAGEKACPV
Ga0308204_102524492	3300031092	Soil	AVAVGLVAGLAPGAEPSPPPGTSVTPFHPLHVNGPKAGEKACAV
Ga0308197_103132961	3300031093	Soil	LERYYPMSRFLLSAVAGGQVAGLAPGAEPSPPPGTPGTPFHPLNVNGPSAGEKACPV
Ga0308197_103694922	3300031093	Soil	LLSAVAIGLVACLAPGAEPSPEPGTPVTPFHPMHDNGAHAGEKACAV
Ga0308193_10502662	3300031096	Soil	SRPVPSIPPVRYPKGVFPMSRFLLSAVAVGLVAGLAPGAEPSPPPGTPVTPFHPLNVNGPSAGEKACPV
Ga0308181_11397852	3300031099	Soil	VAGLAPGAEPSPPPGTSVTPFHPLHVNGPKAGEKACAV
Ga0308181_11695071	3300031099	Soil	SRGFVQISREVQPKGVFPMSRFLLSAVAIGLVAGLAPGAEPSPEPGTPVTPFHPLHVNGAHAGEKACAV
Ga0308180_10207241	3300031100	Soil	ASSVRFNSPVRYPPKGVSPMSRFLLSAVAVGLVAGLAPGAEPSPPVGTAVTPFHPLHVNGKSAGEKACAV
Ga0308187_104093581	3300031114	Soil	MSRFLLSAVAVGLVAGLAPGADPSPSPGTAVTPFHPLNVNGPAAGEKACPV
Ga0308151_10259241	3300031124	Soil	SRPVPSIPPVRYPKGVFPMSRFLLSAVAVGLVAGLAPGADPSPSPGTAVTPFHPLNVNGPAAGEKACPV
Ga0308151_10472062	3300031124	Soil	SAVAVGLVAGLAPGAEPSPAPGTSVTPFHPLHVTGPKAGEKACAV
Ga0308182_10183042	3300031125	Soil	PKGVFPMSRFLLSAVAVGLVAGLAPGADPSPSPGTVVTPFHPLNVNGPAAGEKACPV
Ga0308194_101816832	3300031421	Soil	MSRFLLSAVAVGLVAGLAPGAEPSPPPGTPVTPFHPLNVNGPSAGEKACPV
Ga0308186_10295272	3300031422	Soil	FHPSREVPKGVFPMSRFLLSAVAVGLVAGLAPGADPSPSPGTAVTPYHPLNVNGPAAGEKACPV
Ga0308176_117638721	3300031996	Soil	VAVGLVAGLAPGADPSPAPGTPVTPFHPLNVNGPAAGEKACPV
Ga0370544_11383_16_171	3300034447	Soil	MNRFLLSAVAVGLVAGLAPGADPSPSPGTVVTPFHPLNVNGPAAGEKACPV
Ga0370548_102313_2_160	3300034644	Soil	PMSRFLLSAVAVGLVAGLAPGADPSPPPGTAVTPFHPLNVNGPAAGEKACPV
Ga0314780_137312_406_561	3300034659	Soil	MSRYLLPAVAAGLFAGVALPADPSPSPGTAVTPFHPLNVNGPSAGDKACPV
Ga0314782_163052_430_555	3300034661	Soil	VGLVAGLSPGAEPSPAPGTAVTPFHPLHVNGAHAGEKACAV
Ga0314783_079024_407_667	3300034662	Soil	GLAPPAPVGQTILCRARVESSFLLSREVQPKGVFPMSRFLLSAVAVGLVAGLAPGAEPSPEPGTSVTPFHPLHVTGPKAGEKACAV
Ga0314786_141302_1_156	3300034664	Soil	MSRFLLSAVAIGLVAGLAPGAEPSPEPGTAVTPFHPLHVNGAHAGEKACAV
Ga0314793_090108_59_214	3300034668	Soil	MSRFLMSAVAVGLVAGLAPGAEPSPPVGTSVTPFHPLHVTGPKAGEKACAV
Ga0314793_134030_405_545	3300034668	Soil	VPVVAAGLFAGVALPADPSPSPGTAVTPFHPLNVNGPSAGDKACPV
Ga0314794_092753_56_211	3300034669	Soil	MSRFLLSAVAIGRVAGLAPGAEPSPEPGTAVTPFHPLHVNGKSAGEKACAV
Ga0314795_079368_2_208	3300034670	Soil	ESSFPLSREVQPKGVFPMSRFLLSAVAVGLVAGLAPGAEPSPAPGTAVTPFHPLHVNGPSAGEKACAV
Ga0314795_138761_405_518	3300034670	Soil	AGFAPAADPSPSPGTAVTPFHPLNVNGPSAGEKACPV
Ga0314798_117930_3_266	3300034673	Soil	AGLAPPAPDDHTNCAVPASRGFVQLSREVQPKGVFPMSRFLLSAVAVGLVAGLAPGAEPSPAPGTAVTPFHPLHVNGPSAGEKACAV
Ga0314798_160816_319_519	3300034673	Soil	FVQLSREVQPKGVFPMSRFLLSAGAVGLVAGLAPGAEPSPAPGTPVTPFHPLHVTGPKAGEKACAV
Ga0314803_090904_403_585	3300034678	Soil	RYPPKGVFPMSRFLLSAVAVGLVAGLAPGAEPSPAPGTAVTPFHPLHVNGPSAGEKACAV
Ga0370541_050791_1_213	3300034680	Soil	RLLTVLFNHPVRYPKGVFPMSRFLLSAVAVGLVAGLAPGADPSPPPGTAVTPFHPLNVNGPAAGEKACPV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F075476

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences