Metagenome / Metatranscriptome Family F075319

Basic Information
Family ID	F075319
Family Type	Metagenome / Metatranscriptome
Number of Sequences	119
Average Sequence Length	41 residues
Representative Sequence	MTGTRLTDIIFDRHEDFLYEDSRAMKLTPYVMSERCLQVE
Number of Associated Samples	105
Number of Associated Scaffolds	119

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	100.00 %
% of genes near scaffold ends (potentially truncated)	96.64 %
% of genes from short scaffolds (< 2000 bps)	94.96 %
Associated GOLD sequencing projects	99
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.27

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Unclassified (65.546 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater (16.807 % of family members)
Environment Ontology (ENVO)	Unclassified (72.269 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (90.756 % of family members)

Multiple Sequence Alignments

Select alignment to view:

Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58 1DelMOWin2010_102186401 2ACM2_10321892 3Ga0078893_100063141 4Ga0075478_102632192 5Ga0075466_11926521 6Ga0066836_101977281 7Ga0099675_10559231 8Ga0075477_100551711 9Ga0075477_102262973 10Ga0075479_101196394 11Ga0066372_109477233 12Ga0075469_101739771 13Ga0066366_103226461 14Ga0102948_12483452 15Ga0075480_1003864810 16Ga0115550_12639982 17Ga0102812_106677571 18Ga0115545_11389471 19Ga0115546_13234662 20Ga0115561_11107605 21Ga0115561_12319471 22Ga0115561_13565261 23Ga0115554_12215411 24Ga0115555_11352321 25Ga0114932_101367364 26Ga0115571_13212941 27Ga0115572_107842052 28Ga0115013_114320272 29Ga0129351_13260002 30Ga0136656_11666183 31Ga0129324_100534081 32Ga0160422_103266223 33Ga0163110_101034289 34Ga0163109_104299851 35Ga0163109_107023221 36Ga0163109_108675421 37Ga0182076_15816581 38Ga0182082_13982953 39Ga0180120_103392552 40Ga0181391_10498174 41Ga0181391_11025432 42Ga0181412_11154413 43Ga0181412_11479991 44Ga0181404_10976291 45Ga0181381_11138002 46Ga0187222_10384255 47Ga0181431_11151131 48Ga0181431_11153451 49Ga0187218_10207051 50Ga0181428_11624511 51Ga0181397_11836012 52Ga0181400_10471665 53Ga0181411_10565654 54Ga0181411_11494233 55Ga0181408_11418501 56Ga0187220_11865593 57Ga0181425_10177911 58Ga0181394_10964703 59Ga0181380_10987504 60Ga0181580_108350532 61Ga0181587_101640291 62Ga0181585_110626082 63Ga0180433_104333351 64Ga0181560_105610062 65Ga0181567_106982943 66Ga0181563_108103101 67Ga0188848_10172172 68Ga0181575_106893791 69Ga0181596_101133605 70Ga0211654_10311993 71Ga0211654_10526462 72Ga0211483_102583582 73Ga0211522_10623271 74Ga0211510_10746751 75Ga0211705_100952681 76Ga0211705_103545512 77Ga0211699_103305841 78Ga0211699_104453152 79Ga0211512_101834271 80Ga0211521_101538261 81Ga0211622_101219545 82Ga0211539_103772822 83Ga0211576_102910043 84Ga0211564_104396473 85Ga0211548_102251021 86Ga0211475_101606231 87Ga0211577_107648171 88Ga0211579_106379861 89Ga0211541_102280754 90Ga0213862_103479072 91Ga0206123_102400041 92Ga0213863_103096423 93Ga0226832_101262771 94Ga0222718_105296601 95Ga0212021_11249081 96Ga0255765_12323451 97Ga0233427_102616581 98Ga0255774_102609373 99Ga0255743_100238581 100Ga0255743_102740041 101Ga0255766_1002586912 102Ga0222670_100334114 103Ga0233444_102814933 104Ga0209634_10590591 105Ga0208660_11168662 106Ga0209195_11333202 107Ga0209194_11043273 108Ga0208428_10970244 109Ga0209362_12692972 110Ga0208427_10733591 111Ga0209308_101905651 112Ga0209308_104359402 113Ga0208407_11465401 114Ga0207993_11458152 115Ga0257106_10520275 116Ga0302133_105349802 117Ga0310345_115445841 118Ga0315334_104322761 119Ga0310342_1033294541
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58 1DelMOWin2010_102186401 2ACM2_10321892 3Ga0078893_100063141 4Ga0075466_11926521 5Ga0066836_101977281 6Ga0075469_101739771 7Ga0115546_13234662 8Ga0115554_12215411 9Ga0181412_11154413 10Ga0181412_11479991 11Ga0211699_103305841 12Ga0226832_101262771 13Ga0255774_102609373 14Ga0255766_1002586912 15Ga0257106_10520275
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40 1Ga0187218_10207051 2ACM2_10321892 3Ga0075466_11926521 4Ga0066836_101977281 5Ga0075479_101196394 6Ga0102948_12483452 7Ga0102812_106677571 8Ga0115546_13234662 9Ga0115561_11107605 10Ga0115561_12319471 11Ga0115554_12215411 12Ga0115013_114320272 13Ga0181412_11154413 14Ga0181381_11138002 15Ga0187220_11865593 16Ga0181394_10964703 17Ga0181380_10987504 18Ga0181580_108350532 19Ga0180433_104333351 20Ga0211654_10526462 21Ga0211483_102583582 22Ga0211522_10623271 23Ga0211699_104453152 24Ga0211564_104396473 25Ga0211577_107648171 26Ga0213863_103096423 27Ga0226832_101262771 28Ga0222718_105296601 29Ga0255774_102609373 30Ga0255766_1002586912 31Ga0209308_104359402 32Ga0257106_10520275 33Ga0310345_115445841
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Neighboring Clusters of Orthologous Genes (COGs)

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 19.12% β-sheet: 5.88% Coil/Unstructured: 75.00%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.27
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.27
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Pfam ID	Name	% Frequency in 119 Family Scaffolds
PF14743	DNA_ligase_OB_2	0.84
PF00924	MS_channel	0.84

COG ID	Name	Functional Category	% Frequency in 119 Family Scaffolds
COG0668	Small-conductance mechanosensitive channel	Cell wall/membrane/envelope biogenesis [M]	0.84
COG3264	Small-conductance mechanosensitive channel MscK	Cell wall/membrane/envelope biogenesis [M]	0.84

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	34.45 %
Unclassified	root	N/A	65.55 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	19.33 %
Unclassified	root	N/A	65.55 %
Viruses	superkingdom	All Organisms → Viruses	15.13 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	19.33 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	15.13 %
Unclassified	root	N/A	65.55 %

Name	Rank	Taxonomy	Distribution
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	14.29 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	15.13 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.68 %
Unclassified	root	N/A	65.55 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.84 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	14.29 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.84 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	15.13 %
Unclassified	root	N/A	65.55 %

Name	Rank	Taxonomy	Distribution
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	14.29 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.84 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	15.13 %
Rickettsiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales	0.84 %
Unclassified	root	N/A	65.55 %

Name	Rank	Taxonomy	Distribution
Flavobacteriia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia	14.29 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.84 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	15.13 %
Unclassified	root	N/A	65.55 %
unclassified Rickettsiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales	0.84 %

Name	Rank	Taxonomy	Distribution
Flavobacteriales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	14.29 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.84 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	15.13 %
Rickettsiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	0.84 %
Unclassified	root	N/A	65.55 %

Name	Rank	Taxonomy	Distribution
Crocinitomicaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae	13.45 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.84 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	15.13 %
Rickettsiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	0.84 %
Unclassified	root	N/A	65.55 %

Name	Rank	Taxonomy	Distribution
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.84 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	15.13 %
Rickettsiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	0.84 %
Unclassified	root	N/A	65.55 %
unclassified Crocinitomicaceae	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae	13.45 %

Name	Rank	Taxonomy	Distribution
Crocinitomicaceae bacterium TMED45	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium TMED45	13.45 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.84 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	15.13 %
Rickettsiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	0.84 %
Unclassified	root	N/A	65.55 %

Visualization
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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
(restricted) 3300022933\|Ga0233427_10261658	Not Available	738	Open in IMG/M
(restricted) 3300024264\|Ga0233444_10281493	Not Available	725	Open in IMG/M
3300000117\|DelMOWin2010_c10218640	Not Available	575	Open in IMG/M
3300001834\|ACM2_1032189	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium TMED45	616	Open in IMG/M
3300005837\|Ga0078893_10006314	Not Available	523	Open in IMG/M
3300006026\|Ga0075478_10263219	Not Available	515	Open in IMG/M
3300006029\|Ga0075466_1192652	Not Available	508	Open in IMG/M
3300006166\|Ga0066836_10197728	All Organisms → Viruses → Predicted Viral	1193	Open in IMG/M
3300006334\|Ga0099675_1055923	Not Available	621	Open in IMG/M
3300006869\|Ga0075477_10055171	All Organisms → Viruses → Predicted Viral	1763	Open in IMG/M

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Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	0.84%
Marine	Environmental → Aquatic → Marine	96.64%
Non-Marine Saline And Alkaline	Environmental → Aquatic → Non-Marine Saline And Alkaline	2.52%

Habitat	Taxonomy	Distribution
Coastal	Environmental → Aquatic → Marine → Coastal	15.13%
Hydrothermal Vents	Environmental → Aquatic → Marine → Hydrothermal Vents	0.84%
Hypersaline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline	0.84%
Inlet	Environmental → Aquatic → Marine → Inlet	1.68%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	15.13%
Lentic	Environmental → Aquatic → Freshwater → Lentic	0.84%
Neritic Zone	Environmental → Aquatic → Marine → Neritic Zone	0.84%
Oceanic	Environmental → Aquatic → Marine → Oceanic	15.13%
Pelagic	Environmental → Aquatic → Marine → Pelagic	12.61%
Saline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline	1.68%
Strait	Environmental → Aquatic → Marine → Strait	16.81%
Unclassified	Environmental → Aquatic → Marine → Unclassified	17.65%
Volcanic	Environmental → Aquatic → Marine → Volcanic	0.84%

Habitat	Taxonomy	Distribution
Diffuse Flow	Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow	0.84%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	0.84%
Photic Zone	Environmental → Aquatic → Marine → Oceanic → Photic Zone	5.04%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	12.61%
Sediment	Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment	0.84%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	17.65%
Unclassified	Environmental → Aquatic → Marine → Strait → Unclassified	16.81%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	15.13%
Unclassified	Environmental → Aquatic → Marine → Pelagic → Unclassified	12.61%
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	10.08%
Unclassified	Environmental → Aquatic → Marine → Inlet → Unclassified	1.68%
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	1.68%
Unclassified	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified	1.68%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	0.84%
Unclassified	Environmental → Aquatic → Marine → Neritic Zone → Unclassified	0.84%
Unclassified	Environmental → Aquatic → Marine → Volcanic → Unclassified	0.84%

Habitat	Taxonomy	Distribution
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	9.24%
Deep Subsurface	Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface	0.84%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	0.84%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	0.84%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	0.84%
Freshwater To Marine Saline Gradient	Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient	3.36%
Hydrothermal Vent Fluids	Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Hydrothermal Vent Fluids	0.84%
Hypersaline Lake Sediment	Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment	0.84%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	16.81%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	6.72%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	0.84%
Marine	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine	0.84%
Marine	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine	0.84%
Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine	0.84%
Marine Plankton	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Plankton	0.84%
Marine Surface Water	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water	0.84%
Pelagic Marine	Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine	11.76%
Saline Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water	0.84%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	12.61%
Seawater	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater	16.81%
Seawater	Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater	1.68%
Seawater	Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater	1.68%
Seawater	Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater	1.68%
Seawater	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Seawater	0.84%
Seawater	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater	0.84%
Seawater	Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater	0.84%
Surface Seawater	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater	3.36%
Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Water	0.84%

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000117	Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010	Environmental	Open in IMG/M
3300001834	Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - ACM2, ROCA_DNA019_0.2um_2g	Environmental	Open in IMG/M
3300005837	Exploring phylogenetic diversity in Port Hacking ocean in Sydney, Australia - Port Hacking PH4 TJ4-TJ18	Environmental	Open in IMG/M
3300006026	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_<0.8_DNA	Environmental	Open in IMG/M
3300006029	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_<0.8_DNA	Environmental	Open in IMG/M
3300006166	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302SV91	Environmental	Open in IMG/M
3300006334	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT224_1_0025m	Environmental	Open in IMG/M
3300006869	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_>0.8_DNA	Environmental	Open in IMG/M
3300006870	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_>0.8_DNA	Environmental	Open in IMG/M
3300006902	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_250_ad_251m_LV_A	Environmental	Open in IMG/M

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Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
DelMOWin2010_102186401	3300000117	Marine	MTGTRLTDIIMDRHEDHLYEDSRAMRLTPYVMAERCLQAEFAGIMSE
ACM2_10321892	3300001834	Marine Plankton	MGTRLTDIVFDRHEDHLYEDERAMRLTPYVMAERCLQVEAWGIIKDAQ
Ga0078893_100063141	3300005837	Marine Surface Water	MGTRLKADIIFDRHEDFLYEDSRAMKLTPYVMSERCLQ
Ga0075478_102632192	3300006026	Aqueous	MTGTRLTDIIMDRHEDFLYEDSRAMKLTPYVMSERCLQVE
Ga0075466_11926521	3300006029	Aqueous	MGTRLADIVFDRNDDFLYEDDRAMKLTPYVMAERCLQVEMSNI
Ga0066836_101977281	3300006166	Marine	MGTRLKEIIIDKHEDLLYEDERAMKLTHYVMAERC
Ga0099675_10559231	3300006334	Marine	MGTRLKDIIFDRHEDHLYEDERAMRLTPYVMAERCLQVEAVKIYDDY
Ga0075477_100551711	3300006869	Aqueous	MGTRLIDIVLDRHEDHLYEDSRAMRLTPYVMAERCLQVEISNI
Ga0075477_102262973	3300006869	Aqueous	MGTRLADIIFDRQEDFLYEDERAMRLTPYVMAERCLQ
Ga0075479_101196394	3300006870	Aqueous	MGTRLTDIILDRHEDFLYEDSRDMRLTPYVMAERCLQAEFAGIMS
Ga0066372_109477233	3300006902	Marine	MGTRLKEIIFDKHDDLLYEDERAMKLTHYVMAERCL
Ga0075469_101739771	3300007231	Aqueous	MTGTRLLDIVMDRNEDFLYEDSRAMKLTPYVMSERCIQVEV
Ga0066366_103226461	3300007283	Marine	MGTRLKEIIFDKHEDLLYEDERAMKLTHYVMAERC
Ga0102948_12483452	3300007623	Water	MGNRLADIIFDRHEEHLYEDNRAMKLTPYVMAERCLQVE
Ga0075480_1003864810	3300008012	Aqueous	MTGTRLTDIIMDRHEDHLYEDSRAMRLTPYVMAERCL
Ga0115550_12639982	3300009076	Pelagic Marine	MTGTRLADIIMDRHEDFLYEDSRAMKLTPYVMSERCIQVEASNIYKDYK
Ga0102812_106677571	3300009086	Estuarine	MTGTRLIDVVMDRHEDHLYEDSRAMRLTPYVMAERCLQAEF
Ga0115545_11389471	3300009433	Pelagic Marine	MTGTRLLDIVMDRNEDFLYEDSRAMRLTPYVMSER
Ga0115546_13234662	3300009435	Pelagic Marine	MTGTRLTEIIMDRHEDFLYEDSREMKRTPYVMSER
Ga0115561_11107605	3300009440	Pelagic Marine	MGTRLADVIFDRHEDHLYEDSRAMKLTPYVMSERCLQVEI
Ga0115561_12319471	3300009440	Pelagic Marine	MTGTRLLDIVMDRNEDFLYEDSRAMRLTPYVMSERCIQAEV
Ga0115561_13565261	3300009440	Pelagic Marine	MTGTRLIDIVMDRHEDHLYEDSRAMRLTPYVMAERCLQA
Ga0115554_12215411	3300009472	Pelagic Marine	MGTRLIDIVLDREEDFLYEDERAMRLTPYVMAERC
Ga0115555_11352321	3300009476	Pelagic Marine	MTGTRLADIIMDRHEDHLYEDSRAMRLTPYVMAERCLQ
Ga0114932_101367364	3300009481	Deep Subsurface	MGTRLADIIFDRTEDFLYEDERAMKLTPYVMSERCLQVEIRTSI*
Ga0115571_13212941	3300009495	Pelagic Marine	MTGARLIDIVMDRHEDHLYEDSRAMRLTPYVMAERCLQAEFAGIM
Ga0115572_107842052	3300009507	Pelagic Marine	MTGTRLADIIMDRHEDHLYEDERAMRLTPYVMAERCVQSEFVGIM
Ga0115013_114320272	3300009550	Marine	MGTRLKDIVFDRHEDFLYEDNRAMKLAPYVMAERCLQVEAVKIYDDYK
Ga0129351_13260002	3300010300	Freshwater To Marine Saline Gradient	MGTRLADIILDRHEDHLYEDERAMRLTPYVMAERCLQVEINS
Ga0136656_11666183	3300010318	Freshwater To Marine Saline Gradient	MTGTRLTDIIMDRHEDHLYEDSRAMRLTPYVMAERCLQAEFAGI
Ga0129324_100534081	3300010368	Freshwater To Marine Saline Gradient	MTGTRLTDIIMDRHEDHLYEDSRAMRLTPYVMAERCLQAEFAG
Ga0160422_103266223	3300012919	Seawater	MGTRLIDIVFDRYEDHLYEDDRAMRLTPYVMAERCLQV
Ga0163110_101034289	3300012928	Surface Seawater	MGTRLIDIVFDRHEDFLYEDNRAMKLTPYVMAERCLQVE
Ga0163109_104299851	3300012936	Surface Seawater	MGTRLKDIVFDRHEDHLYEDERAMRLTPYVMAERCLQ
Ga0163109_107023221	3300012936	Surface Seawater	MTGTRLTEVIYDRHEDFLYEDSRAMKLTPYVMSERCLQ
Ga0163109_108675421	3300012936	Surface Seawater	MGTKLKDIIFDRHEDHLYEDERAMRLTPYVMAERCLQVE
Ga0182076_15816581	3300016739	Salt Marsh	MGTRLIDIVLDRQEDFLYEDERAMRLTPYVMAERCLQ
Ga0182082_13982953	3300016771	Salt Marsh	MGTRLADIILDREEDFLYEDERAMKLTPYVMAERL
Ga0180120_103392552	3300017697	Freshwater To Marine Saline Gradient	MTGTRLTEIIMDRHEDFLYEDSRAMKLTPYVMSERCI
Ga0181391_10498174	3300017713	Seawater	MGTRLADVIFDRHEDFLYEDSRAMKLTPYVMSERCLQVEA
Ga0181391_11025432	3300017713	Seawater	MTGTRLTDIVMDRHEDFLYEDSRAMKLTPYVMSERCLQVEIS
Ga0181412_11154413	3300017714	Seawater	MGVRLTDIVFDRHEDFLYEDDRAMKLTSYVMAERCIQVEVAKIYND
Ga0181412_11479991	3300017714	Seawater	MTGTRLADIIFDRHEDFLYEDSRAMKLTPYVMSERCLQVEISNIYKDYK
Ga0181404_10976291	3300017717	Seawater	MTGTRLLDIVMDRNEDFLYEDSRAMKLTPYVMSERCIQAE
Ga0181381_11138002	3300017726	Seawater	MTGTRLKDIVFDRQEDHLYEDARAMRLTPYVMSERCLQVEMSNIYQD
Ga0187222_10384255	3300017734	Seawater	MGTRLADIIFDRHEDFLYEDSRAMKLTPYVMSERCLQVEISNIYKDYK
Ga0181431_11151131	3300017735	Seawater	MTGTRLADIIMDRQEDFLYEDSRAMKLTPYVMSERC
Ga0181431_11153451	3300017735	Seawater	MTGTRLAEVIYDRHEDFLYEDSRAMKLTPYVMSERC
Ga0187218_10207051	3300017737	Seawater	MTGTRLTDIIFDRHEDFLYEDSRAMKLTPYVMSERCLQVE
Ga0181428_11624511	3300017738	Seawater	MGVRLTDIVFDRHEDFLYEDDRAMKLTSYVMAERCIQ
Ga0181397_11836012	3300017744	Seawater	MTGTRLADIIFDRHEDFLYEDSRAMKLTPYVMSERCVQVEISNIY
Ga0181400_10471665	3300017752	Seawater	MTGTRLTDIIMDRHEDFLYEDSRAMKLTPYVMSERCIQV
Ga0181411_10565654	3300017755	Seawater	MTGTRLTDIVMDRHEDFLYEDSRAMKLTPYVMSER
Ga0181411_11494233	3300017755	Seawater	MTGTRLAEVIYDRHEDFLYEDSRAMKLTPYVMSERCLQV
Ga0181408_11418501	3300017760	Seawater	MGVRLTDIVFDRHEDFLYEDDRAMKLTSYVMAERCIQVEVAKIYN
Ga0187220_11865593	3300017768	Seawater	MGTRLLDIVFDKNDDLLYEDDRAMKLSHYVMAERCLQAEMK
Ga0181425_10177911	3300017771	Seawater	MGTRLADIIFDRTEDFLYEDERAMKLTPYVMAERCLQVE
Ga0181394_10964703	3300017776	Seawater	MGKRLKDIIFDRHEDFLYEDDRAMKLTPYVMAERCVQVEV
Ga0181380_10987504	3300017782	Seawater	MTGTRLAEVIYDRHEDFLYEDSRAMKLTPYVMSERCLQVEISNIY
Ga0181580_108350532	3300017956	Salt Marsh	MTGTRLTDIIMDRHEDHLYEDSRAMRLTPYVMAERCVQSEFVGIMDEYR
Ga0181587_101640291	3300017968	Salt Marsh	MTGTRLTDIIMDRHEDHLYEDSRAMRLTPYVMAERC
Ga0181585_110626082	3300017969	Salt Marsh	MGTRLTDIIMDRHEDHLYEDERAMRLTPYVMAERCVQSEFVGIM
Ga0180433_104333351	3300018080	Hypersaline Lake Sediment	MGTRLADIILDRQEDFLYEDERAMKLTPYVMAERCLQVE
Ga0181560_105610062	3300018413	Salt Marsh	MGTRLTDIVFDRHEDHLYEDERAMRLTPYVMAERCLQVEMKNIYE
Ga0181567_106982943	3300018418	Salt Marsh	MGTRLADIILDREEDFLYEDERAMKLTPYVMAERLTQW
Ga0181563_108103101	3300018420	Salt Marsh	MTGTRLTDIIMDRHEDHLYEDSRAMRLTPYVMAERCLQSE
Ga0188848_10172172	3300018775	Freshwater Lake	MGNRLTDIIFDRHEEHLYEDNRAMKLTPYVMAERCLQV
Ga0181575_106893791	3300020055	Salt Marsh	MGTRLTDIVFDRHEDHLYEDDRAMRLTPYVMAERCLQVEAVKIYDDYKK
Ga0181596_101133605	3300020177	Salt Marsh	MGTRLIDIVLDRHEDHLYEDERAMRLTPYVMAERCLQVEINSIFSDG
Ga0211654_10311993	3300020247	Marine	MGTRLTTDIQDRHTDFLYEDSRAMKLTPYVMSERCLQVE
Ga0211654_10526462	3300020247	Marine	MGNRLTDIVFDRHADHLYEDERAMKLTPYVMSERCLQVE
Ga0211483_102583582	3300020281	Marine	MGTKLKDIIFDRQEDHLYEDDRAMRLTPYVMAERCLQVEMKNIYEDYN
Ga0211522_10623271	3300020314	Marine	MGTRLAEIISDRHEDLLYEDSRAMKLTSYVMAERCLQ
Ga0211510_10746751	3300020336	Marine	MGQRLKDIIFDRHEDFLYEDNRAMKLTPYVMAERCLQ
Ga0211705_100952681	3300020395	Marine	MGTRLKDIIFDRHEDHLYEDDRAMRLTPYVMAERCLQVEIKNIFK
Ga0211705_103545512	3300020395	Marine	MGTRLKDIIFDRHEDHLYEDERAMSLTPYVMAERCLQVEIKNI
Ga0211699_103305841	3300020410	Marine	MAIPGLTGTRLTDIIFDRHEDFLYEDSRAMKLTPYVMS
Ga0211699_104453152	3300020410	Marine	MGTRLKDIIFDRSEDQLYEDERAMRLTPYVMAERCLQVE
Ga0211512_101834271	3300020419	Marine	MTGTRLTDIIMDRHEDFLYEDSRAMKLTPYVMSERCLQVEISDIYKD
Ga0211521_101538261	3300020428	Marine	MGISGLTGTRLTDIIFDRHEDFLYEDSRAMKLTPYVMSERCLQVE
Ga0211622_101219545	3300020430	Marine	MGTRLKDIIFDRHEDHLYEDERAMRLTPYVMAERCL
Ga0211539_103772822	3300020437	Marine	MGTRLTDIIFDRHEDHLYEDERAMRLTPYVMAERCIQVEVASIFNDK
Ga0211576_102910043	3300020438	Marine	MTGTRLTDIIFDRHEDFLYEDSRAMKLTPYVMSERCLQVEISNIY
Ga0211564_104396473	3300020445	Marine	MGTRLADIVFDRHEDFLYEDERAMKLTPYVMSERCLQVEAAKIYNDKAEGD
Ga0211548_102251021	3300020454	Marine	MGTRLADIIFDRTEDFLYEDERAMKLTPYVMAERCLQVEIKNIYLD
Ga0211475_101606231	3300020468	Marine	MGTRLKDIVFDRSEDHLYEDERAMRLTPYVMSERCLQVEA
Ga0211577_107648171	3300020469	Marine	MTGTRLIDIVMDRHEDHLYEDSRAMRLTPYVMSERCIQVEAS
Ga0211579_106379861	3300020472	Marine	MTGTRLADIIFDRHEDFLYEDSRAMKLTPYVMSERCLQVEISNIY
Ga0211541_102280754	3300020475	Marine	MGTRLKDIVFDRHEDHLYEDERAMRLTPYVMSERC
Ga0213862_103479072	3300021347	Seawater	MGTRLTDIVFDRHEDHLYEDERAMRLTPYVMAERCLQVEAVK
Ga0206123_102400041	3300021365	Seawater	MTGTRLIDIVMDRHEDFLYEDSRAMKLTPYVMSERCIQVEISN
Ga0213863_103096423	3300021371	Seawater	MGTRLADIIMDRHEDHLYEDSRAMRLTPYVMAERCLQAEFAGIMSE
Ga0226832_101262771	3300021791	Hydrothermal Vent Fluids	MGTRLKDIIFDKNEDLLYEDERAMALTHYVMAERCIQVQMKDIH
Ga0222718_105296601	3300021958	Estuarine Water	MMGTRLADIILDREEDFLYEDERAMKLTPYVMAERLTQWE
Ga0212021_11249081	3300022068	Aqueous	MGTRLADIIFDRQEDFLYEDERAMRLTPYVMAERCLQV
Ga0255765_12323451	3300022921	Salt Marsh	MGTRLTDIIMDRHEDHLYEDERAMRLTPYVMAERCVQSEFVGIMDE
(restricted) Ga0233427_102616581	3300022933	Seawater	MTGTRLTDIIFDRNDDFLYEDSRAMKLTPYVMSERCL
Ga0255774_102609373	3300023087	Salt Marsh	MGTRLKDIIFDRHEDLLWQDEHAMSLTPYVMAERCLQVEAWKI
Ga0255743_100238581	3300023110	Salt Marsh	MGTRLKDIIFDRHEDLLWQDEHAMSLTPYVMAERCLQVEAWKIYDS
Ga0255743_102740041	3300023110	Salt Marsh	MGTRLKDIIFDRHEDHLYEDDRAMRLTPYVMAERCL
Ga0255766_1002586912	3300023172	Salt Marsh	MGRRLIDIVFDRESDYLYVDDRNMNLTPYVMAERCVQAEFAGIME
Ga0222670_100334114	3300023294	Saline Water	MGTRLADIVFDRNEDFLYEDDRAMKLTPYVMAERCLQVESWQILTSAKDG
(restricted) Ga0233444_102814933	3300024264	Seawater	MTGTRLLDIVMDRNEDFLYEDSRAMKLTPYVMSERC
Ga0209634_10590591	3300025138	Marine	MGTRLADIVFDRNDDFLYEDDRAMKLTPYVMAERCL
Ga0208660_11168662	3300025570	Aqueous	MTGTRLLDIVMDRNEDFLYEDSRAMKLTPYVMSERCIQVEVVKI
Ga0209195_11333202	3300025590	Pelagic Marine	MTGTRLADIIMDRHEDFLYEDSRAMKLTPYVMSERC
Ga0209194_11043273	3300025632	Pelagic Marine	MTGTRLIDIVMDRHEDHLYEDSRAMRLTPYVMAERCLQ
Ga0208428_10970244	3300025653	Aqueous	MTGTRLLDVVMDRNEDFLYEDSRAMKLTPYVMAER
Ga0209362_12692972	3300025770	Marine	MTGTRLADIIFDRHEDFLYEDSRAMKLTPYVMSERCLQVE
Ga0208427_10733591	3300025771	Aqueous	MGTRLADIIFDRQEDFLYEDERAMRLTPYVMAERC
Ga0209308_101905651	3300025869	Pelagic Marine	MTGTRLTDIVFDRHEDFLYEDSRAMKLTPYVMSERCLQVEAVKIYDD
Ga0209308_104359402	3300025869	Pelagic Marine	MGTRLKDIVFDRHEDQLYQDEHAMSLTPYVMAERCLQIEAWK
Ga0208407_11465401	3300026257	Marine	MGTRLKDIVFDRHEDHLYEDERAMKLTPYVMSERCLQV
Ga0207993_11458152	3300026270	Marine	MTGTRLTDIVFDRHEDFLYEDSRAMKLTPYVMAERCIQVEAWKIYDDEK
Ga0257106_10520275	3300028194	Marine	MGKKLGKIIFDRMKDNLYQDDRGMTLTPYVMAERCLQVEV
Ga0302133_105349802	3300031646	Marine	MTGTRLTDIIFDRNEDFLYEDSRAMKLTPYVMSERCVQIEVAKIFKD
Ga0310345_115445841	3300032278	Seawater	MGTRLKDIIFDKHDDLLYEDERAMNLTHYVMAERCLQA
Ga0315334_104322761	3300032360	Seawater	MGTRLKDIIFDKQEDLLYEDERAMNLTHYVMAERCLQ
Ga0310342_1033294541	3300032820	Seawater	MGTRLADIIMDRHEDFLYEDSRAMRLTPYVMAERCL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters