Metagenome / Metatranscriptome Family F075312

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F075312
Family Type	Metagenome / Metatranscriptome
Number of Sequences	119
Average Sequence Length	103 residues
Representative Sequence	MSIASVQWLIESRPPGMTWSRPSPSLHPNQPQLDLSDHEADRVQAASNDRGVRVSTVRARWAARPRRGLPDAQQWSTTLALALIQALLAQRPVAQAIR
Number of Associated Samples	101
Number of Associated Scaffolds	119

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	89.92 %
% of genes near scaffold ends (potentially truncated)	62.18 %
% of genes from short scaffolds (< 2000 bps)	89.08 %
Associated GOLD sequencing projects	97
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.27

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (60.504 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (29.412 % of family members)
Environment Ontology (ENVO)	Unclassified (34.454 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (37.815 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 35.71% β-sheet: 0.00% Coil/Unstructured: 64.29%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.27
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.27
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 119 Family Scaffolds
PF03306	AAL_decarboxy	5.04
PF06441	EHN	2.52
PF13481	AAA_25	1.68
PF00072	Response_reg	1.68
PF07366	SnoaL	1.68
PF13671	AAA_33	0.84
PF01594	AI-2E_transport	0.84
PF13641	Glyco_tranf_2_3	0.84
PF13231	PMT_2	0.84
PF06803	DUF1232	0.84
PF07702	UTRA	0.84
PF00459	Inositol_P	0.84
PF13936	HTH_38	0.84
PF01610	DDE_Tnp_ISL3	0.84
PF11258	DUF3048	0.84
PF00753	Lactamase_B	0.84

COG ID	Name	Functional Category	% Frequency in 119 Family Scaffolds
COG3527	Alpha-acetolactate decarboxylase	Secondary metabolites biosynthesis, transport and catabolism [Q]	5.04
COG0596	2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase MenH and related esterases, alpha/beta hydrolase fold	Coenzyme transport and metabolism [H]	2.52
COG0628	Predicted PurR-regulated permease PerM	General function prediction only [R]	0.84
COG3339	Uncharacterized membrane protein YkvA, DUF1232 family	Function unknown [S]	0.84
COG3464	Transposase	Mobilome: prophages, transposons [X]	0.84

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.50 %
All Organisms	root	All Organisms	39.50 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.50 %
cellular organisms	root	All Organisms → cellular organisms	39.50 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.50 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	39.50 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.50 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	36.13 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.50 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	36.13 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.50 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	24.37 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.50 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	5.88 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	2.52 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	0.84 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.84 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.50 %
Ruaniaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Ruaniaceae	2.52 %
Propionibacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae	1.68 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.84 %
Intrasporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae	0.84 %
Nocardioidaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae	0.84 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.84 %
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.50 %
Ruania	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Ruaniaceae → Ruania	2.52 %
Microlunatus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Microlunatus	1.68 %
Mycolicibacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycolicibacterium	0.84 %
Salinispora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Salinispora	0.84 %
Nocardioides	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides	0.84 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.84 %
Intrasporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.50 %
Ruania albidiflava	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Ruaniaceae → Ruania → Ruania albidiflava	2.52 %
Microlunatus flavus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Microlunatus → Microlunatus flavus	0.84 %
Salinispora mooreana	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Salinispora → Salinispora mooreana	0.84 %
Mycolicibacterium murale	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycolicibacterium → Mycolicibacterium murale	0.84 %
Microlunatus phosphovorus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Microlunatus → Microlunatus phosphovorus	0.84 %
Nocardioides	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides	0.84 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.84 %
Intrasporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.50 %
Ruania albidiflava	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Ruaniaceae → Ruania → Ruania albidiflava	2.52 %
Microlunatus phosphovorus NM-1	strain	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Microlunatus → Microlunatus phosphovorus → Microlunatus phosphovorus NM-1	0.84 %
Microlunatus flavus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Microlunatus → Microlunatus flavus	0.84 %
Salinispora mooreana	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Salinispora → Salinispora mooreana	0.84 %
Mycolicibacterium murale	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycolicibacterium → Mycolicibacterium murale	0.84 %
Nocardioides	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides	0.84 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.84 %
Intrasporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae	0.84 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000787\|JGI11643J11755_11678386	Not Available	707	Open in IMG/M
3300000956\|JGI10216J12902_109159260	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1954	Open in IMG/M
3300001431\|F14TB_100602911	Not Available	742	Open in IMG/M
3300001431\|F14TB_101700009	Not Available	726	Open in IMG/M
3300001431\|F14TB_102793471	Not Available	627	Open in IMG/M
3300004479\|Ga0062595_100360087	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1018	Open in IMG/M
3300004479\|Ga0062595_102246027	Not Available	536	Open in IMG/M
3300005093\|Ga0062594_100823714	Not Available	862	Open in IMG/M
3300005168\|Ga0066809_10242827	Not Available	500	Open in IMG/M
3300005339\|Ga0070660_101859536	Not Available	513	Open in IMG/M
3300005345\|Ga0070692_10060784	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1990	Open in IMG/M
3300005353\|Ga0070669_100461912	Not Available	1048	Open in IMG/M
3300005354\|Ga0070675_102208254	Not Available	507	Open in IMG/M
3300005459\|Ga0068867_100709708	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	888	Open in IMG/M
3300005459\|Ga0068867_101232738	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	688	Open in IMG/M
3300005539\|Ga0068853_100724438	Not Available	950	Open in IMG/M
3300005719\|Ga0068861_102048610	Not Available	571	Open in IMG/M
3300005843\|Ga0068860_101454882	Not Available	707	Open in IMG/M
3300006049\|Ga0075417_10054743	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae	1732	Open in IMG/M
3300006169\|Ga0082029_1051499	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1055	Open in IMG/M
3300006194\|Ga0075427_10065908	Not Available	640	Open in IMG/M
3300006196\|Ga0075422_10238503	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycolicibacterium → Mycolicibacterium murale	760	Open in IMG/M
3300006575\|Ga0074053_11375111	Not Available	786	Open in IMG/M
3300006581\|Ga0074048_12867761	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	1144	Open in IMG/M
3300006844\|Ga0075428_101436792	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Ruaniaceae → Ruania → Ruania albidiflava	723	Open in IMG/M
3300006844\|Ga0075428_101751105	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Ruaniaceae → Ruania → Ruania albidiflava	647	Open in IMG/M
3300006853\|Ga0075420_101267982	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Ruaniaceae → Ruania → Ruania albidiflava	633	Open in IMG/M
3300006876\|Ga0079217_11618885	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	518	Open in IMG/M
3300006881\|Ga0068865_101059088	Not Available	713	Open in IMG/M
3300006918\|Ga0079216_10754482	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	705	Open in IMG/M
3300007004\|Ga0079218_11789911	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	687	Open in IMG/M
3300009100\|Ga0075418_10931438	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	939	Open in IMG/M
3300009157\|Ga0105092_10607813	Not Available	632	Open in IMG/M
3300009162\|Ga0075423_10013161	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	8050	Open in IMG/M
3300009545\|Ga0105237_11096684	Not Available	803	Open in IMG/M
3300009551\|Ga0105238_10489470	Not Available	1230	Open in IMG/M
3300009553\|Ga0105249_10687635	Not Available	1082	Open in IMG/M
3300009789\|Ga0126307_10074854	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2668	Open in IMG/M
3300009840\|Ga0126313_10708452	All Organisms → cellular organisms → Bacteria	816	Open in IMG/M
3300010036\|Ga0126305_10217555	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Salinispora → Salinispora mooreana	1217	Open in IMG/M
3300010036\|Ga0126305_10859941	Not Available	618	Open in IMG/M
3300010038\|Ga0126315_10509022	All Organisms → cellular organisms → Bacteria	769	Open in IMG/M
3300010040\|Ga0126308_10526422	All Organisms → cellular organisms → Bacteria	801	Open in IMG/M
3300010045\|Ga0126311_10235269	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1352	Open in IMG/M
3300010045\|Ga0126311_10494992	Not Available	955	Open in IMG/M
3300010999\|Ga0138505_100021398	Not Available	832	Open in IMG/M
3300011000\|Ga0138513_100072664	Not Available	531	Open in IMG/M
3300012908\|Ga0157286_10146576	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Microlunatus → Microlunatus flavus	747	Open in IMG/M
3300012938\|Ga0162651_100030736	Not Available	785	Open in IMG/M
3300012941\|Ga0162652_100006780	Not Available	1305	Open in IMG/M
3300013306\|Ga0163162_10391186	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1523	Open in IMG/M
3300013307\|Ga0157372_10300749	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1866	Open in IMG/M
3300017965\|Ga0190266_10434853	Not Available	741	Open in IMG/M
3300018000\|Ga0184604_10240070	Not Available	632	Open in IMG/M
3300018054\|Ga0184621_10016144	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2233	Open in IMG/M
3300018061\|Ga0184619_10137932	Not Available	1109	Open in IMG/M
3300018063\|Ga0184637_10782095	Not Available	511	Open in IMG/M
3300018066\|Ga0184617_1144180	Not Available	694	Open in IMG/M
3300018067\|Ga0184611_1080669	Not Available	1116	Open in IMG/M
3300018073\|Ga0184624_10119825	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1139	Open in IMG/M
3300018075\|Ga0184632_10211724	Not Available	852	Open in IMG/M
3300018076\|Ga0184609_10323874	Not Available	720	Open in IMG/M
3300018082\|Ga0184639_10516061	Not Available	600	Open in IMG/M
3300018466\|Ga0190268_10218778	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Microlunatus → Microlunatus phosphovorus → Microlunatus phosphovorus NM-1	1060	Open in IMG/M
3300018466\|Ga0190268_10225869	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1050	Open in IMG/M
3300018469\|Ga0190270_11914191	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	650	Open in IMG/M
3300018469\|Ga0190270_12051518	Not Available	631	Open in IMG/M
3300018469\|Ga0190270_12776339	Not Available	552	Open in IMG/M
3300018469\|Ga0190270_12929358	Not Available	539	Open in IMG/M
3300018481\|Ga0190271_10400824	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1466	Open in IMG/M
3300018481\|Ga0190271_11058687	Not Available	935	Open in IMG/M
3300019767\|Ga0190267_10234018	Not Available	894	Open in IMG/M
3300019767\|Ga0190267_11016354	Not Available	584	Open in IMG/M
3300019873\|Ga0193700_1014197	Not Available	1302	Open in IMG/M
3300019884\|Ga0193741_1006251	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3172	Open in IMG/M
3300021078\|Ga0210381_10178937	Not Available	732	Open in IMG/M
3300022694\|Ga0222623_10093204	Not Available	1170	Open in IMG/M
3300023058\|Ga0193714_1064175	Not Available	516	Open in IMG/M
3300025901\|Ga0207688_10444396	Not Available	808	Open in IMG/M
3300025904\|Ga0207647_10284308	Not Available	944	Open in IMG/M
3300025932\|Ga0207690_10083416	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2237	Open in IMG/M
3300025935\|Ga0207709_10580551	Not Available	885	Open in IMG/M
3300025938\|Ga0207704_11850955	Not Available	519	Open in IMG/M
3300025961\|Ga0207712_10079061	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2388	Open in IMG/M
3300026023\|Ga0207677_11009032	Not Available	755	Open in IMG/M
3300026041\|Ga0207639_10678536	Not Available	955	Open in IMG/M
3300027873\|Ga0209814_10060426	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1587	Open in IMG/M
3300028380\|Ga0268265_10512073	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1133	Open in IMG/M
3300028380\|Ga0268265_11483905	Not Available	681	Open in IMG/M
3300028592\|Ga0247822_11238541	Not Available	624	Open in IMG/M
3300028704\|Ga0307321_1014072	Not Available	1371	Open in IMG/M
3300028710\|Ga0307322_10061415	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	929	Open in IMG/M
3300028711\|Ga0307293_10003365	Not Available	4098	Open in IMG/M
3300028713\|Ga0307303_10002260	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2898	Open in IMG/M
3300028715\|Ga0307313_10013347	Not Available	2136	Open in IMG/M
3300028722\|Ga0307319_10158187	Not Available	736	Open in IMG/M
3300028744\|Ga0307318_10075605	Not Available	1127	Open in IMG/M
3300028744\|Ga0307318_10228846	Not Available	645	Open in IMG/M
3300028771\|Ga0307320_10088687	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1168	Open in IMG/M
3300028771\|Ga0307320_10335679	Not Available	603	Open in IMG/M
3300028782\|Ga0307306_10000249	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	12343	Open in IMG/M
3300028791\|Ga0307290_10078847	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1197	Open in IMG/M
3300028793\|Ga0307299_10380612	Not Available	529	Open in IMG/M
3300028802\|Ga0307503_10058944	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1499	Open in IMG/M
3300028809\|Ga0247824_10364833	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	827	Open in IMG/M
3300028814\|Ga0307302_10329414	Not Available	752	Open in IMG/M
3300028819\|Ga0307296_10474118	Not Available	685	Open in IMG/M
3300028824\|Ga0307310_10006812	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides	4335	Open in IMG/M
3300028885\|Ga0307304_10013995	Not Available	2599	Open in IMG/M
3300030903\|Ga0308206_1120131	Not Available	607	Open in IMG/M
3300031092\|Ga0308204_10346483	Not Available	510	Open in IMG/M
3300031852\|Ga0307410_11055145	Not Available	703	Open in IMG/M
3300031995\|Ga0307409_100739440	All Organisms → cellular organisms → Bacteria	986	Open in IMG/M
3300031995\|Ga0307409_101844229	Not Available	634	Open in IMG/M
3300031995\|Ga0307409_102692882	Not Available	525	Open in IMG/M
3300032002\|Ga0307416_103118332	Not Available	554	Open in IMG/M
3300032013\|Ga0310906_10027400	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2546	Open in IMG/M
3300032126\|Ga0307415_100190337	Not Available	1618	Open in IMG/M
3300034148\|Ga0364927_0082649	Not Available	876	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	67.23%
Host-Associated	Host-Associated	32.77%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	56.30%
Plants	Host-Associated → Plants	32.77%
Aquatic	Environmental → Aquatic	10.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	52.10%
Rhizosphere	Host-Associated → Plants → Rhizosphere	21.01%
Rhizoplane	Host-Associated → Plants → Rhizoplane	11.76%
Sediment	Environmental → Aquatic → Sediment	9.24%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	3.36%
Freshwater	Environmental → Aquatic → Freshwater	1.68%
Floodplain	Environmental → Terrestrial → Floodplain	0.84%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	48.74%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	17.65%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	11.76%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	9.24%
Loam	Environmental → Terrestrial → Soil → Loam	3.36%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	3.36%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.36%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.68%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.84%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	39.50%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	17.65%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	11.76%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	9.24%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	5.04%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	3.36%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.36%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.52%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	2.52%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.68%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.68%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.84%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.84%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	29.41%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	8.40%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	7.56%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	6.72%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	5.04%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	4.20%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	3.36%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	3.36%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.52%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.52%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.52%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.52%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	2.52%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	2.52%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.68%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.68%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.68%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.68%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	0.84%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.84%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.84%
Termite Nest	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Termite Nest	0.84%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.84%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.84%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.84%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.84%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.84%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.84%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.84%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.84%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000787	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005168	Soil and rhizosphere microbial communities from Laval, Canada - mgLPC	Environmental	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006169	Termite nest microbial communities from Madurai, India	Environmental	Open in IMG/M
3300006194	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1	Host-Associated	Open in IMG/M
3300006196	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1	Host-Associated	Open in IMG/M
3300006575	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006581	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006876	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200	Environmental	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300006918	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100	Environmental	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009157	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015	Environmental	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010036	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010999	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t3i015	Environmental	Open in IMG/M
3300011000	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t6i015	Environmental	Open in IMG/M
3300012908	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S089-202R-1	Environmental	Open in IMG/M
3300012938	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t2i015	Environmental	Open in IMG/M
3300012941	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t4i015	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental	Open in IMG/M
3300018000	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_coex	Environmental	Open in IMG/M
3300018054	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1	Environmental	Open in IMG/M
3300018061	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1	Environmental	Open in IMG/M
3300018063	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b2	Environmental	Open in IMG/M
3300018066	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_b1	Environmental	Open in IMG/M
3300018067	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_coex	Environmental	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300018075	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b1	Environmental	Open in IMG/M
3300018076	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex	Environmental	Open in IMG/M
3300018082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b2	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300019767	Populus adjacent soil microbial communities from riparian zone of Oak Creek, Arizona, USA - 239 T	Environmental	Open in IMG/M
3300019873	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3s1	Environmental	Open in IMG/M
3300019884	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2s2	Environmental	Open in IMG/M
3300021078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_coex redo	Environmental	Open in IMG/M
3300022694	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_coex	Environmental	Open in IMG/M
3300023058	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2m1	Environmental	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025904	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes)	Host-Associated	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026041	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028592	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Cellulose_Day30	Environmental	Open in IMG/M
3300028704	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_379	Environmental	Open in IMG/M
3300028710	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_380	Environmental	Open in IMG/M
3300028711	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_150	Environmental	Open in IMG/M
3300028713	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_184	Environmental	Open in IMG/M
3300028715	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_203	Environmental	Open in IMG/M
3300028722	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_368	Environmental	Open in IMG/M
3300028744	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_367	Environmental	Open in IMG/M
3300028771	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_369	Environmental	Open in IMG/M
3300028782	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_193	Environmental	Open in IMG/M
3300028791	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_144	Environmental	Open in IMG/M
3300028793	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_159	Environmental	Open in IMG/M
3300028802	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 17_S	Environmental	Open in IMG/M
3300028809	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_PalmiticAcid_Day48	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300028824	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_197	Environmental	Open in IMG/M
3300028885	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_185	Environmental	Open in IMG/M
3300030903	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_369 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031092	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_367 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031852	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3	Host-Associated	Open in IMG/M
3300031995	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2	Host-Associated	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032126	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2	Host-Associated	Open in IMG/M
3300034148	Sediment microbial communities from East River floodplain, Colorado, United States - 18_j17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI11643J11755_116783861	3300000787	Soil	MSTATTPSKRPSVSRLIDSRPPSLTWARPSPPXRNQPQLDLIDQEIDCAEPTGNDRGVRMSTVKARWAAR
JGI10216J12902_1091592604	3300000956	Soil	MTTAAAPSRRPSIQSLIESRPPSLTWSRPSPVPPNQPSLDLIDHEPDHAASAATNDQGVRVSLVKARWAARPRTGLPDVTEWSSTLGLAMMQALLGQRPVSQLNRWVVEDVLGAISIFQRRRLRVSGRIA*
F14TB_1006029111	3300001431	Soil	MSTTVAASGTYTVQRLIESRPPGVSWSRPSPPQSNQPPLDFTDYEPDHVETAVLNDRGVRVSMVKARWAAQPRAGLPDAREWSTALALAVIQTLLGQRPVAQANVSKSDRGFCAA
F14TB_1017000091	3300001431	Soil	MSATVAPTDTYTVHWLIESRPPSVSWSRPSPLPSNQPALDFTDRESDHVEAVEAAVPNDRGIRVSMVKARWAARQRPGLPDAQEWSTVLALAVVQTLLGQRPVSQLNRWVVD
F14TB_1027934712	3300001431	Soil	MSTTTAPSRTPSVQWLIESRPPSLTWSRPAPLQPNQPPLDLTDHEPEVAEAAGPGDRGIRVSIVKAHWAAKQRPGLPDAREWSTTLALALTQSLVGRRPVAQLNRWVVDE
Ga0062595_1003600871	3300004479	Soil	MTTASAPSNMPSVRWLIESRPPSLTWSRPSLVQSNQPSLDFMDHEPNYAGSEVPNDQGVRASVVRGRWTARPRPGLPDATEWSSTLALAMIQALLGQRP
Ga0062595_1022460271	3300004479	Soil	MLTATAPSKRPSVSWLIESRPPSLTWARPSPPQCNQPQLDLTDQEPVHAEATAAKDRGVRMSAVKARWAVRPRPGLPDAQEWSAKLA
Ga0062594_1008237141	3300005093	Soil	MSIASVQWLIESRPPGMTWSRPSPCLHPNQPQLDLSDHEADRVQAPSNDRGVRVSTVRARWAARPRRGLPDAQQWSTTLALALIQALPAQRPVAQAIR*
Ga0066809_102428271	3300005168	Soil	MSTTTTSPRTAYVHWLIESRPPSLTWSRSSPPQPNQPPLNLIEPDHAEAAASNDRGVRVSLVKARWAARQRPGLPDAGEWSATLARAVMQTLLG
Ga0070660_1018595361	3300005339	Corn Rhizosphere	WSRPPSSLHPNQPQLDLSDHEADRVQAPSNDRGVRVSTVRARWAARPRRGLPDAQQWSTTLALALIQALPAQRPVAQAIR*
Ga0070692_100607842	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	MSIASVQWLIESRPPGMTWSRPSSSLHPNQPQLDLSDHEADRVQAPSNDRGVRVSTVRARWAARPRRGLPDAQQWSTTLALALIQALLAQRPVAQAIR*
Ga0070669_1004619122	3300005353	Switchgrass Rhizosphere	MSIASVQWLIESRPPGMTWSRPSPSLHPNQPQLDLSDHEADRVQAPSNDRGVRVSTVRARWAARPRRGLPDAQQWSTTLALALIQALPAQRPVAQAIR*
Ga0070675_1022082541	3300005354	Miscanthus Rhizosphere	MSIASVQWLIESRPPGMTWSRPSPCLHPNQPQLDLSDHEADRLQAPSNDRGVRVSTVRARWAARPRRGLPDAQQWSTTLALALIKRYWPSDLSLKRLSANVT*
Ga0068867_1007097082	3300005459	Miscanthus Rhizosphere	MSIASVQWLIESRPPGMTWSRPSPSLHPNQPQLDLSDHEADRVQAPSNDRGVRVSTVRARWAARPRRGLPDAQQWSTTLA
Ga0068867_1012327381	3300005459	Miscanthus Rhizosphere	MSTTTASPRTPSVRWLIESRPPSLTWLRPALPPSNQLPLDLSDHEIDRAEITWLDDRGVRVSTVRARWAARPRRGLPDAQQWSGALALAVIQTLLGQRSVSQLNRWVAEDV
Ga0068853_1007244382	3300005539	Corn Rhizosphere	MSIASVQWLIESRPPGMTWSRPSSSLHPNQPQLDLSDHEADRVQAPSNDRGVRVSTVRARWAARPRRGLPDAQQWSTTLALALIQALPAQRPVAQAIR*
Ga0068861_1020486101	3300005719	Switchgrass Rhizosphere	MSIASVQWLIESRPPGMTWSRPSPSLHPNQPQLDLSDHEADRVQAASNDRGVRVSTVRARWAARPRRGLPDAQQWSTTLALALIQALLAQRPVA
Ga0068860_1014548822	3300005843	Switchgrass Rhizosphere	MSIASVQWLIESRPPGMTWSRPPSSLHPNQPQLDLSDHEADRVQAPSNDRGVRVSTVRARWAARPRRGLPDAQQWSTTLALALIQALPAQRPVAQAIR*
Ga0075417_100547433	3300006049	Populus Rhizosphere	MSIASVQWLIESRPPGMTWSRPSSSLHPNQPQLDLSDDEADRVQAPSNDRGVRVSTVRARWAARPRRGLPDAQQWSTT
Ga0082029_10514991	3300006169	Termite Nest	MSTTTAPSSTFSVQWLIESRPPGLAWSRLTRAEPNQPPLDLVDHEEGPPAAAAPNRQALRVSTVRAPWAARPRPGLPDAQQWSATLALAIV
Ga0075427_100659082	3300006194	Populus Rhizosphere	MSTTVASLRTYTVQWLIESRPPSVTWSRPAPPQSNQPPLDFADQEPAHVTDAVPNDRGVRVSMVKARWAARQRPGLPDAREWSTALALAVIQTLLGQRPVAQANFHKDDLAPVGKAHNS*
Ga0075422_102385032	3300006196	Populus Rhizosphere	MSIASVQWLIESRPPGMTWSRPSSSLHPNQPQLDLSDDEADRVQAPSNDRGVRVSTVRARWAARPRRGLPDAQQWSTTLALALIQALLAQRPVAQRLSANVT*
Ga0074053_113751111	3300006575	Soil	MSMTRAPSQIARVQWLVESRPPSLTWSRPSPPPSNQPPLDLGDHEIDRAEITRLNDRGVRVSTVTARWAARPRRGLPDAQQWSSALALAVIQTLLGQRSAAQLNRWAAEDVL
Ga0074048_128677611	3300006581	Soil	MSTTTTSPRTAYVHWLIESRPPSLTWSRSSPPQPNQPPLNLIEPDHAEAAASNDRGVRVSLVKARWAARQRPGLPDAGEWSATLARAVMQTLLGQRSVGTLNRWVVEEVLAAISICQRRSLSLRGRTAVPIALRSIHVQHP
Ga0075428_1014367921	3300006844	Populus Rhizosphere	MPTTTTSSRTSCVQWLMESRPPGLTWSRPSPLQPDQPPLDFTDREPDVTEDMAPNDRGVRVSLLKAGWFAKQRPGLPDAREWSTTLAMALIQALLGQRPVAQLNRWAVDEVLVAISMYQRRSLALHGRI
Ga0075428_1017511051	3300006844	Populus Rhizosphere	MSTTVASLRTYTVQWLIESRPPSVTWSRPAPPQSNQPPLDFADQEPAHVTAAVPNDRGVRVSMVKARWAARQRPGLPDAREWSTALALAVIQTLLGQRPVAQLN
Ga0075420_1012679821	3300006853	Populus Rhizosphere	MSTTVASLRTYTVQWLIESRPPSVTWSRPAPPQSNQPPLDFADQEPAHVAAAVPNDRGVRVSMVKARWAARQRPGLPDAREWSTALALAVIQTLLGQRPVAQLNRWMAEEVLVEISIYQRRSLSLHGR
Ga0079217_116188851	3300006876	Agricultural Soil	MSTTTTSSRTSYVQWLIESRPPSVTWSRSSPPPTNQPPLDLVDREPDTAEAAAPDRRGVRVSMVKARWAAKQRPGLPDAREWSTTLALALTQ
Ga0068865_1010590882	3300006881	Miscanthus Rhizosphere	MSIASVQWLIESRPPGMTWSRPSPSLHPNQPQLDLSDHEADRVQAPSNDRGVRVSTVRARWAARPRRGLPDAQQWSTTLALALIKRYWPSDLSLKRLSA
Ga0079216_107544822	3300006918	Agricultural Soil	MSTTTTSSRTSYIQWLIESRPPGLTWSRPSPSQPNQPSLDLIDHKPDVAEAAAPDNRGVRVSMVKARWAAKQRPELPDAREWSTTLALALIQALLGQRPVAQLNRWVVEEVLVAISVYQRRSLAQHGRIAIPTAVRSVRVQHPDPEV
Ga0079218_117899112	3300007004	Agricultural Soil	MSTTPTSSRTSYIQWLIESRPSGLTWSRPSPSQPNQPSLDLIDHKPDVAEAAASDNRGVRVSMVKARWAAKQRPELPDAREWSTTLALALIQALLGQRPVAQAIFCKPDLATGW*
Ga0075418_109314381	3300009100	Populus Rhizosphere	MPTASKLPSVSWLIESRPPSLSWSRPEPSQSNQPPLDFGDDEPDHAEAAAPNDRGVRVSMVKARWAARQRPGLPDAREWSTALALAVIQTLLGQRPVAQLNRWMAEEV
Ga0105092_106078131	3300009157	Freshwater Sediment	MPTATAPSKLPSVSWLIESRPPGLTWARPAPPQHNQPPLDLIDHEPDRPAAAAPNDRGIRVTTVNARWAARPRRG
Ga0075423_100131611	3300009162	Populus Rhizosphere	MSIASVQWLIESRPPGMTWSRPSSSLHPNQPQLDLSDDEADRVQAPSNDRGVRVSTVRARWAARPRRGLPDAQQWSTTLALALIQALLAQRPVAQLNRWVAEEVLAAISMYQRRSLRVHGRIAVPSAVRSVRVQH
Ga0105237_110966842	3300009545	Corn Rhizosphere	SRPSSSLHPNQPQLDLSDHEADRVQAPSNDRGVRVSTVRARWAARPRRGLPDAQQWSTTLALALIQARLAQRPVAQAIR*
Ga0105238_104894703	3300009551	Corn Rhizosphere	SIASVQWLIESRPPGMTWSRPPSSLHPNQPQLDLSDHEADRVQAPSNDRGVRVSTIRARWAARPRRGLPDAQQWSTTLALALIQALPAQRPVAQAIR*
Ga0105249_106876352	3300009553	Switchgrass Rhizosphere	MSIASVQWLIESRPPGMTWSRPSSSLHPNQPQLDLSDHEADRLQAPSNDRGVRVSTVRARWAARPRRGLPDAQQWSTTLALALIQALPAQRPVAQAIR*
Ga0126307_100748543	3300009789	Serpentine Soil	MSTTTTSSRTFYIQWLIESRPSGLTWSRPSPSQPNQPSLDLIDHKPDVAEAAAPDSRGVRVSMVKARWAAKQRPELPDAREWSTTLALALIQAMLGQRPVAQATR*
Ga0126313_107084521	3300009840	Serpentine Soil	MSTTTTWSRTSHILWLIESRPPGLTWSRPSPSQPNQPSLDLIDHKPDVAEAAAPDNRGVRVSMVKARWAAKQRPGLPDAQEWSTTLALAVIQALVGRRPVAQATR*
Ga0126305_102175553	3300010036	Serpentine Soil	MSTTTTSSRTFYIQWLIESRPSGLTWSRPSPSQPNQPSLDLIDHKPDVAEAAAPDNRGVRVSMVKARWAAKQRPELPDAREWSTTLALALIQAMLGQRPVAQATR*
Ga0126305_108599411	3300010036	Serpentine Soil	MLTATAPSKRPSVSWLIESRPPSLTWARPSPLQCNQPQLDLTDQEPVYAEAAAAKDRGVRMSAVKARWAARPRPGLPDAQEWSAKLAL
Ga0126315_105090222	3300010038	Serpentine Soil	MSTTTTSSRTSDIQWLIESRPPGLTWSRPSPSQPNQPSLDLIDHKPDVAEAAAPDNRGVRVSMVKARWAAKQRPGLPDAQEWSTTLALAVIQALVGRRPVAQATR*
Ga0126308_105264222	3300010040	Serpentine Soil	MSTTTTSSRTSYIQWLIESRPPGLTWSRPSPSQPNQPSLDLIDHKPDVAEAAAPDNRGVRVSMVKAHWAAKQRPELPDAREWSTTLALALIQAMLGQRPVAQATR*
Ga0126311_102352692	3300010045	Serpentine Soil	MSTTTTSSRTSYIQWLIESRPPGLTWSRPSPSQPNQPSLDLIDHKPDVAEAAAPDDRGVRVSMVKARWAAKQRPGLPDAQEWSTTLALAVIQALVGRRPVAQATR*
Ga0126311_104949922	3300010045	Serpentine Soil	MSTTTTPSHTPSVQWLVESRPPGITWSRPAPAEPNQPPLDLADHEDDHPETPAANDRGIRVSTVKAGWAAQPRPGLPDAQQWSTTLALAIIQAMLGQRPVAQATR*
Ga0138505_1000213981	3300010999	Soil	MSTTSTPARPPRIQWLIDSRPPSLTWARPSPPLRNQPQLDLIDQETDCAEPAGNDRGVRMSTVKARWAARPRPGLPDAQEWSAKLALAIIQALTGQRPAAQATRWKCALAMVRTKS*
Ga0138513_1000726641	3300011000	Soil	MSTPVPLTDRYTVQWLIESRPPSLSWSRPPVPQSNQPPLDFTDPEPDDVGAAVPNDRGVRVSMVKARWAARQRPGLPDAREWSTTLALAVMQTLLGQRPVAQ
Ga0157286_101465761	3300012908	Soil	MSTTPTPARPPRIQWLIDSRPPSLTWARPSPPPRNQPELDLIDQETDRAEPADNDRGARMSTVKARWAARPRRGLPDAQEWSAKLALAITQT
Ga0162651_1000307361	3300012938	Soil	YTVQWLIESRPPSLSWSRPPVPQSNQPPLDFTDPEPNDVGAAVPNDRGVRVSMVKARWAARQRPGLPDAREWSTTLALAVMQTLLGQRPVAQATR*
Ga0162652_1000067802	3300012941	Soil	MTATKTSSGMSCVQWLIESWPPSITWSRSSPPQPNQPPLNLTEPDYAEAAAPNDRGVRAGVVKARWAARQRPELPDAREWSATLAPALIQTLLGQRPVSQAIR*
Ga0163162_103911862	3300013306	Switchgrass Rhizosphere	MSIASVQWLIESRPPGMTWSRPSSSLHANQPQLDLSDHEADRVQAPSNDRGVRVSTVRARWAARPRRGLPDAQQWSTTLALALIQALPAQRPVAQAIR*
Ga0157372_103007492	3300013307	Corn Rhizosphere	MSIASVQWLIESRPPGMTWSRPSSSLHPNQPQLDLSDHEADRVQAASNDRGVRVSTVRARWAARPRRGLPDAQQWSTTLALALIQALPAQRPVAQAIR*
Ga0190266_104348531	3300017965	Soil	MSTTTTPSRTPSVQWLIESRPPGITWSRPAPAEPNQPPLDLADHEDDRPEIAAVNDRGIRVSTVKAGWAAQPRPGLPNAQQWSTTLALAIIQAMLGQRPVAHPILSKGGLAVLPGCSVAL
Ga0184604_102400702	3300018000	Groundwater Sediment	MSTTSTPARPPRIQWLIDSRPPSLTWARPSSPPRNQPQLDLIDQETDCAEPAGNDRGVRMSTVKARWAARPRPGLPDAQEWSAKLALAIIQALTGQRPAAHPILPKHGL
Ga0184621_100161441	3300018054	Groundwater Sediment	MSTTTASPRTSCVQWVIESRPPSLTWARPSPPQPNQPPLDLTDHQPDHAEGAAPDDRGVRISLVKARWAARQRTGLPDAREWSATLALAVIQTLLRQRPVAQAIR
Ga0184619_101379321	3300018061	Groundwater Sediment	MPTATAPSKRPSVSWLIESRPPSLTWARPSPPQCNQPQLDLTDQEPVYAEATAAKDRGVRMSAVKARWAARPRPGLPEAQE
Ga0184637_107820951	3300018063	Groundwater Sediment	MPTATAPSKRPSVSWLIDSRPPSLTWARPSPPQRNQPQLDLTDQEPVYAEATAAKDRGVRMSAVKARWAARPRPGLPEAQEWSAKLALAITQALTG
Ga0184617_11441801	3300018066	Groundwater Sediment	MSTATTPSKRPSVSWLIESRPPSLTWARPSPPQRNQPQLDLTDQEPVYAEAATAKDRGVWMSTVKTRWAARPRPGLPDAQEWSAKLTLAIIQALTGQRPIAQATQ
Ga0184611_10806691	3300018067	Groundwater Sediment	MLTTTSSSRTSSVQWLIESRPPSLTWARPSQQQSNQPPLDLIDHEFDHAEDTAANHRGVRVSTVKARWAARPRPGLPDAQEWSTTLALAVIQALVGQRPVSQAILSERALAGRRCGRARAAP
Ga0184624_101198251	3300018073	Groundwater Sediment	MLTTTSSSRTSSVQWLIESRPPSLTWGRPSQQQSNQPPLDLIDHEFDHADDTAANHRGVRVSTVKARWAARPRPGLPDAQEWSTTLALAVIQALVGQRPVSHPNRSKCALAGTRNLCRR
Ga0184632_102117242	3300018075	Groundwater Sediment	MPASTASSRTSGVQWLIESRPPSLTWARPSPPQQNQPPLDLIDHEPDQTEAVVPYHRGVRVSTVGARWAARPRPGLPDVQVWSTKLALAIIQTLVGQRPAAQL
Ga0184609_103238742	3300018076	Groundwater Sediment	TREADMSTTTTSSRTSRVQWLIESWPPGLTWSRPAPLQSNQPPLDLADHEPDHAEAAGPDDRGVRVSMVKARWASKQRPGLPDAGEWSTTLALALTQSLLGQRPVTHATR
Ga0184639_105160611	3300018082	Groundwater Sediment	MLTTTSSSRTSSVQWLIESRPPSLTWARPSQQQSNQPPLDLIDHEFDHADDTAANHRGVRVSTVKARWAARPRPGLPDAQEWSTTLALAVIQALVGQRPVSQAILAKRALAGRRCGRARAAPRRRTWEPIAGPSW
Ga0190268_102187781	3300018466	Soil	MSTPVPLTDRYTVQWLIESRPPSLSWSRPPVPQSNQPPLDFTDPEPNDVGAAVPNDRGVRVSMVKARWAARQRPGLPDAREWSTTLALAVMQTLLGQRPVAQLNRWVAEEVLVAITIYQRRSLSLHGRIVVPTALRS
Ga0190268_102258692	3300018466	Soil	MSTTTAPSRTPSVHWLIESRPPSLTWARPEWPQPNQPPLDLVDHEPDHTETAAPNHRGVRATTVKARWAARPRPGLPNAEQWSATLALAIIQALLAQRSAAHAIR
Ga0190270_119141912	3300018469	Soil	MSTTTSSSGTSSVQWLIESRPPSLTWSRPSPPQSNQPPLDFADHEPDHLIALPNDRGLRVSVVKAHWAARQRAGLPDAREWSTALALAVIQALLGQRPAAQAIL
Ga0190270_120515181	3300018469	Soil	MSRITTASCAPCVQWLIESRPPGLTWSRPSPSQPNQPPLDLTDHEPDHAEAAGPDDRGVRVSMVKARWAAKQRPGLPDAQEWSTTLALALTQSLLGQRPVAQANGSKGGLASLVTLHGPVDDFAFVAGHL
Ga0190270_127763391	3300018469	Soil	MSTTTTSARTSYVQWLIESRPPSLTWSRSSPPQPNQPPLDLTDQDVNDAAVAVLDHRGVRVSLVKAVWAATQRPGLPDAREWSTTLALALFQALLGQRPVAQANRQKCALAISPRSSPAVWLNA
Ga0190270_129293581	3300018469	Soil	MPTATAQSKRPSVSWLIESRPPSLTWARPSPPQCNQPQLDLTDQEPVYAEATAAKDRGVRMSAVKARWAARPRPGLP
Ga0190271_104008243	3300018481	Soil	MSTITTSPRTPCVQWLIESRPPWLTWSRPSPSQPNQPPLDLTDHEPDDAEVATPNDRGVRVSMVKARWAAKQRPGLPDAREWRTTLALALTQSLLGQRPVAQATR
Ga0190271_110586871	3300018481	Soil	MSTATTSSRTSYIQWLIESRPPGLTWSRPSPSQPNQPPLDLTDHEPDDAEVATPNDRGVRVSMVKARWAAKQRPGLPDAREWSTTLALALTQSLLGQR
Ga0190267_102340182	3300019767	Soil	MSTPVPLTDRYTVQWLIESRPPSLSWSRPPVPQSNQPPLDFTDPEPNDVGAAVPNDRGVRVSMVKARWAARQRPGLPDAREWSTTLALAVMQTLLGQRPVAQATR
Ga0190267_110163541	3300019767	Soil	MPTATAPSKRPSVSWLIESRPPSLTWARPSPPQCNQPQLDLTDQEAVYAEATAAKDRGVRMSAVKARWAVRPRPGLPDAQEWSAKLALAIIQALTGQRPTAQLNRWVADEVLAAISTSRRRTMRVH
Ga0193700_10141972	3300019873	Soil	MPTATAPSKRPSVSWLIESRPPSLTWARPSPPQRNQPQLDLTDQEPVYAEATAAKDRGVRMSAVKARWAARPRPGLPEAQEWSAKLALAITQALTGQRPAAQATR
Ga0193741_10062517	3300019884	Soil	MSTTTTSSRTSSVQWLIESRPPGLVWSRSTPPQPNQPPLDLTDQEANDAEVAAPDNRGVRVSMVKAAWAAKQRSGLPDAREWSTTLALALTQAMLGQRPVAQATR
Ga0210381_101789372	3300021078	Groundwater Sediment	MSTTTASPRPSCVQWLIESRPPSLTWARPSPPQPNQPPLDLTGHQPDHAEGAAPDDGGARISLVKARWAARQRTGLPDAQEWSATLALAVIQTLLGQRPVAQAIR
Ga0222623_100932041	3300022694	Groundwater Sediment	MLTTTSSSRTSSVQWLIESRPPSLTWARPSPQQSNQPPLDLIDHEFDHADDTAANHRGVRVSTVKARWAARPRPGLPDAQEWSTTLALAVIQALVGQRPVSQL
Ga0193714_10641752	3300023058	Soil	MPTATAPSKRPSVSWLIESRPPSLTWARPSPPQCNQPQLDLTDQEPVYAEATAAKDRGVRMSAVKARWAARPRPG
Ga0207688_104443961	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	MSIASVQWLIESRPPGMTWSRPSSSLHANQPQLDLSDHEADRVQAPSNDRGVRVSTVRARWAARPRRGLPDAQQWSTTLALALIQALLAQRPVAQLNRWVAEEVLAAISMY
Ga0207647_102843082	3300025904	Corn Rhizosphere	MSIASVQWLIESRPPGMTWSRPSSSLHPNQPQLDLSDHEADRVQAPSNDRGVRVSTVRARWAARPRRGLPDAQQWSTTLALALIQALLAQRPVAQAIR
Ga0207690_100834162	3300025932	Corn Rhizosphere	MSIASVQWLIESRPPGMTWSRPPSSLHPNQPQLDLSDHEADRVQAPSNDRGVRVSTVRARWAARPRRGLPDAQQWSTTLALALIQALPAQRPVAQAIR
Ga0207709_105805512	3300025935	Miscanthus Rhizosphere	WSRPPSSLHPNQPQLDLSDHEADRVQAPSNDRGVRVSTVRARWAARPRRGLPDAQQWSTTLALALIQALPAQRPVAQAIR
Ga0207704_118509551	3300025938	Miscanthus Rhizosphere	MSIASVQWLIESRPPGMTWSRPSPSLHPNQPQLDLSDHEADRVQAPSNDRGVRVSTVRARWAARPRRGLPDAQQWSTTLALALI
Ga0207712_100790614	3300025961	Switchgrass Rhizosphere	MSIASVQWLIESRPPGMTWSRPSPSLHPNQPQLDLSDHEADRVQAPSNDRGVRVSTVRARWAARPRRGLPDAQQWSTTLALALIQALPAQRPVAQAIR
Ga0207677_110090321	3300026023	Miscanthus Rhizosphere	MSIASVQWLIESRPPGMTWSRPSPSLHPNQPQLDLSDHEADRVQAASNDRGVRVSTVRARWAARPRRGLPDAQQWSTTLALALIQALLAQRPVAQAIR
Ga0207639_106785362	3300026041	Corn Rhizosphere	MSIASVQWLIESRPPGMTWSRPSSSLHPNQPQLDLSDHEADRVQAPSNDRGVRVSTVRARWAARPRRGLPDAQQWSTTLALALIQALPAQRPVAQAIR
Ga0209814_100604261	3300027873	Populus Rhizosphere	MSIASVQWLIESRPPGMTWSRPSSSLHPNQPQLDLSDDEADRVQAPSNDRGVRVSTVRARWAARPRRGLPDAQQWSTTLALALIQALLAQRPFAQAT
Ga0268265_105120732	3300028380	Switchgrass Rhizosphere	MSIASVQWLIESRPPGMTWSRPSPSLHPNQPQLDLSDHEADRVQAASNDRGVRVSTVRARWAARPRRGLPDAQQWSTTLALALIQA
Ga0268265_114839051	3300028380	Switchgrass Rhizosphere	QWLIESRPPGMTWSRPPSSLHPNQPQLDLSDHEADRVQAPSNDRGVRVSTVRARWAARPRRGLPDAQQWSTTLALALIQALPAQRPVAQAIR
Ga0247822_112385411	3300028592	Soil	MSIASVQWLIESRPPGMTWSRPPSSRHPNQPQLDLSDHEADRVQAPSNDRGVRVSTVRARWAARPRRGLPDAQQWSTTLALALIQALLAQRPVAQATLCKRDLAQSKTVQD
Ga0307321_10140722	3300028704	Soil	WLIESRPPSLTWARPSPPQCNQPQLDLTDQETVYAEATAAKDRGVRMSAVKARWAARPRPGLPEAQEWSAKLALAITQALTGQRPAAQATR
Ga0307322_100614151	3300028710	Soil	MSTTSTPARPPRIQWLIDSRPPSLTWARPSSPPRNQPQLDLIDQETDCAEPAGNDRGVRMSTVKARWAARPRPGLPDAQEWSAKLALAIIQAL
Ga0307293_100033656	3300028711	Soil	MPTATAPSKRPSVSWLIESRPPSLTWARPSPPQCNQPQLDLTDQEPVYAEATAAKDRGVRMSAVKARWAARPRPGLPEAQEWSAKLALAITQALTGQRPAAQAI
Ga0307303_100022602	3300028713	Soil	MPTATAPSKRPSVSWLIESRPPSLTWARPSPPQCNQPQLDLTDQEPVYAEATAAKDRGVRMSAVKARWAARPRPGLPEAQEWSAKLALAITQALTGQRPAAQATR
Ga0307313_100133472	3300028715	Soil	MPTATAPSKRPSVSWLIESRPPSLTWARPSPPQCNQPQLDLTDQETVYAEATAAKDRGVRMSAVKARWAARPRPGLPEAQEWSAKLALAITQALTGQRPAAQATR
Ga0307319_101581871	3300028722	Soil	MSTTSTPSRPPRVQWLIDSRPPSLTWARPSPPPRNQPQLDLIDQETDCAEPAGNDRGVRMSTVKARWAARPR
Ga0307318_100756052	3300028744	Soil	MLTTTSSSRTSSVQWLIESRPPSLTWARPSPQPSNQPPLDLIDHEFDHADDAANHRGVRVSTVKARWAARPRPGLPDAQEWSTTLALAVIQALVGQRPVPQLNRWVVDEVLVAISM
Ga0307318_102288461	3300028744	Soil	MSTTTASPRPSCVQWLIESRPPSLTWARPSPPQPNQPPLDLTGHQPDHAEGAAPDEGGARISLVKARWAARQRTGLPDAQEWSATLALAVIQTLLGQRPVAQAIR
Ga0307320_100886874	3300028771	Soil	MSTATTLSKRPSVSWLIESRPPSLTWARPSPPQCNQPQLDLTDQEPVYAEAATAKDRGVWMSTVKTRWAARPRPGLPDAQEWSAKLTLAIIQALTGQRPIAQATQ
Ga0307320_103356791	3300028771	Soil	MLTTTSSSRTSSVQWLIESRPPSLTWARPSPQPSNQPPLDLIDHKFDHADDTAANHRGVRVSTVKARWAARPRPGLPDAQEWSTTLALAVIQA
Ga0307306_100002494	3300028782	Soil	MPTATAPSKRPSVSWLIESRPPSLTWARPSPPQCNQPQLDLTDQEPVYAEATAAKDRGVRMSAVKARWAARPRPGLPEAQEWSAKLAPAITQALTGQRPAAQATR
Ga0307290_100788472	3300028791	Soil	MSTTSTPARPPRIQWLIDSRPPSLTWARPSSPPRNQPQLDLIDQETDCAEPAGNDRGVRMSTVKARWAARPRPGLPDAQEWSAKLALAIIQALTGQRPAAQANFHKDDLA
Ga0307299_103806121	3300028793	Soil	MSTTSTPARPPRIQWLIDSRPPSLTWARPSSPPRNQPQLDLIDQETDCAEPAGNDRGVRMSTVKARWAARPRPGLPDAQEWSAKLALAIIQALTGQRPAAQLNRWVVDEVMAAISM
Ga0307503_100589441	3300028802	Soil	MSTTTSSSRTSSVQWLIESRPPSLTWSRPSPPQSNQPPLDFADHEPDHLIALPNDRGLRVSVVKARWAARQRAGLPDAREWSTTLALAVIQALLGQRPAA
Ga0247824_103648331	3300028809	Soil	MSIASVQWLIESRSPGMTWSRPSSSLHPNQPQLDLSDHEADRVQAPSNDRGVRVSTVRARWAARPRRGLPDAQQWSTTLALALIQALLAQRPVAQATLCKRDLAQSK
Ga0307302_103294141	3300028814	Soil	VQWLIESRPPSLTWTRPSPLQSNQSPQDLIDHESDDPTAAAPDDRGVRVSMIKARWVARQRPGLPDAREWSTTLALAVIQTLLGQRPVAQATRWKRALAMVRTKS
Ga0307296_104741181	3300028819	Soil	MSTTTTSPRTAYVHWLIESRPPSLTWSRSSPPQPNQPPLNLIEPDHAEAAASNDRGVRVSLVKARWAARQRPGLPDAGEWSATLARAVMQTLLGQRSVGTLNRWVVEEVLAAISICQRRSPSLHGRTAVPIALRS
Ga0307310_100068121	3300028824	Soil	SRPPSLTWARPSPPQCNQPQLDLTDQETVYAEATAAKDRGVRMSAVKARWAARPRPGLPEAQEWSAKLALAITQALTGQRPAAQATR
Ga0307304_100139954	3300028885	Soil	MPTATAPSKRPSVSWLIESRPPSLTWARPSPPQCNQPQLDLTDQEPVYAEATAAKDRGVRMSAVKARWAARPRPGLPEAQEWSAKLA
Ga0308206_11201312	3300030903	Soil	MSTATTLSKRPSVSWLIESRPPSLTWARPSPQQCNQPQLDLTDQEPGSAEPTADNDRGVRMSTVKTRWAARPRPGLPDAQEWSAKLTLAIIQALTGQRPIAQATQ
Ga0308204_103464831	3300031092	Soil	MPTATAPSKRPSVSWLIESRPPSLTWARPSPPQCNQPQLDLTDQEPVYAEAATAKDRGVWMSTVKTRWAARPRPGLPDAQEWSAKLTLAIIQALTGQRPIAQATQ
Ga0307410_110551451	3300031852	Rhizosphere	MSTTTTPSHTPSVQWLVESRPPGITWSRPAPAEPNQPPLDLADHEEDHPETPAANDRGIRVSTVKAGWAAQPRPGPPDAQQWSTTLALAIIQAMLGQRP
Ga0307409_1007394402	3300031995	Rhizosphere	MSTTTTSSRTSYIQWLIESRPPGLTWSRPSPSQPNQPSLDLIDHKPDVAEAAAPDNRGVRVSMVKARWAATQRPELPDAREWSTTLALALIQVMLGQRPVAQLNRWVVEEVLVAISVYQRRSLAQHGRIAIPTAVRSVRVQHPD
Ga0307409_1018442291	3300031995	Rhizosphere	MSTTTTPSHTPSVQWLVESRPPGITWSRPAPAEPNQPPLDLADHEEDHPETPAANDRGIRVSTVKAGWAAQPRPGLPNAQQWSTTLALAIIQAML
Ga0307409_1026928821	3300031995	Rhizosphere	MSTTTSSSRTSSVQWLIESRPPSLTWARPSPQQSNQPALDLIDHEFDHADDTAANHRGVRVSTVKARWAARPRPELPDAKVWSTTLALAVIQALV
Ga0307416_1031183322	3300032002	Rhizosphere	MSTTTTSRTSHILWLIESRPPGLTWSRPSPSQPNQPSLDLIDHKPDVAEAAAPDNRGVRVSMVKAHWAAKQRPELPDAREWSTTLALALIQAMLGQRPVAQATR
Ga0310906_100274004	3300032013	Soil	MSIASVQWLIESRPPGMTWSRPPSSLHPNQPQLDLSDHEADRVQAPSNDRGVRVSTVRARWAARPRRGLPDAQ
Ga0307415_1001903373	3300032126	Rhizosphere	MPTATAPSKRPSVSWLIESRPPSLTWARPSPLQCNQPQLDLTDQEPVYAEAAAAKDRGVRMSAVKARWAARPRPGLPDAQEWSAKLALAIIQALTGQRPAAQLNR
Ga0364927_0082649_494_874	3300034148	Sediment	MSTTTTSSRTSYIQWLIESRPPSLTWSRSSPPQTNQPPLDLTDHEPDVAEVAAPNDQGVRVSMVKARWAAKQRPGLPDAREWSTTLALALTQSLLGQRPVAQLNRWVVDEVLVAISMYQRRSLALHG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F075312

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences