Basic Information | |
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Family ID | F075276 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 119 |
Average Sequence Length | 41 residues |
Representative Sequence | GSEDISMEDVLGKGVRKQPAAAKETVDEDVPQVETQTY |
Number of Associated Samples | 110 |
Number of Associated Scaffolds | 119 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Unclassified |
% of genes with valid RBS motifs | 0.00 % |
% of genes near scaffold ends (potentially truncated) | 0.00 % |
% of genes from short scaffolds (< 2000 bps) | 0.00 % |
Associated GOLD sequencing projects | 103 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.23 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Unclassified (100.000 % of family members) |
NCBI Taxonomy ID | N/A |
Taxonomy | N/A |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (15.126 % of family members) |
Environment Ontology (ENVO) | Unclassified (24.370 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (47.899 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76. |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 24.24% β-sheet: 0.00% Coil/Unstructured: 75.76% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.23 |
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Visualization |
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Peatland Bog Forest Soil Peatland Freshwater Wetlands Freshwater Sediment Natural And Restored Wetlands Watersheds Soil Vadose Zone Soil Terrestrial Soil Tropical Forest Soil Grasslands Soil Surface Soil Peatlands Soil Agricultural Soil Arctic Peat Soil Soil Soil Forest Soil Hardwood Forest Soil Rice Paddy Soil Tropical Peatland Soil Permafrost Tropical Forest Soil Forest Soil Soil Corn, Switchgrass And Miscanthus Rhizosphere Switchgrass Rhizosphere Arabidopsis Rhizosphere Corn Rhizosphere Switchgrass Rhizosphere Miscanthus Rhizosphere Populus Rhizosphere Corn Rhizosphere Corn Rhizosphere Switchgrass Rhizosphere Miscanthus Rhizosphere Corn Rhizosphere |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
JGI1027J12803_1013978871 | 3300000955 | Soil | AEAAGDDISMEDVLGGGTKKAPASAPESADEVPQVESQTF* |
JGI12269J14319_101346311 | 3300001356 | Peatlands Soil | GATDLAAVEEPGTEDISMEDVLGSGTRKQSAAAKENASEDVPQVETQTY* |
JGI12269J14319_103284501 | 3300001356 | Peatlands Soil | ISMEDVLGAGTRKQPAAAKDTVAEDVPQVETQTY* |
JGI12630J15595_100871181 | 3300001545 | Forest Soil | EGAGEAGSEDISMEDVLGKGTRKQPAPAKETVDEDVPQVETQTY* |
JGIcombinedJ26739_1013789731 | 3300002245 | Forest Soil | AGAPEAGSEDISMEDVLGKGVRKQPAPANEAVDEDVPQVETQTY* |
JGI26338J50219_10179741 | 3300003367 | Bog Forest Soil | NASEDGTGEDISMEDVLGAGTRKQPVAAKDSADEVVPQVETQTY* |
Ga0055468_101239531 | 3300003993 | Natural And Restored Wetlands | GSDYGDEGEDVSMEEVLGAGVRKSPVAAKDEEPQVESQSR* |
Ga0068924_12774121 | 3300004608 | Peatlands Soil | EEPGTEDISMEDVLGSGTRKQSAAAKENASEDVPQVETQTY* |
Ga0066395_105326842 | 3300004633 | Tropical Forest Soil | EASGEDISMEDVLGGGTKKSPAAAQDVADEVPQVESQTF* |
Ga0066688_100107835 | 3300005178 | Soil | HAGADDSASEDISMEEVLGAGTRKQPAAAKEEEAGEVPEVETQTY* |
Ga0070660_1001567023 | 3300005339 | Corn Rhizosphere | SGSEDISMEDVLGKGVRKQPAAAGETADEDVPQVETQTY* |
Ga0070688_1003000041 | 3300005365 | Switchgrass Rhizosphere | ESGSEDISMEDVLGKGVRKQPAAAGETADEDVPQVETQTY* |
Ga0070709_107519402 | 3300005434 | Corn, Switchgrass And Miscanthus Rhizosphere | PEAAEGAAAGEGGGEDISMEDVLGAGTTRKQPAAAAKTEEVPQVESQTTY* |
Ga0070741_101371274 | 3300005529 | Surface Soil | GEDISMEDVLGGPARKQPAAAKAQADADEVPQIETQTY* |
Ga0070735_100899264 | 3300005534 | Surface Soil | GAGEDISMEDVLGGPARKQPAAAAKTQADTDEVPQIETQTY* |
Ga0070697_1002489353 | 3300005536 | Corn, Switchgrass And Miscanthus Rhizosphere | VDSAATEDISMEDVLGAGVRKPAAAAATEETAEVPQVETF* |
Ga0066704_106770312 | 3300005557 | Soil | AGGDSSTEDISMEDVLGAGTRRKAAAAKEEAGEDVPQVETQAY* |
Ga0068855_1021192441 | 3300005563 | Corn Rhizosphere | AEELAAAGAPEAGAEDISMEDVLGAGVRKQPAAAKEAVEDEVPQVETQTF* |
Ga0070762_100090215 | 3300005602 | Soil | AAEDISMEDVLGAGTRKQPVAAKEAADETVPQVETQTY* |
Ga0066788_101192012 | 3300005944 | Soil | EDISMEDVLGKGVRKQPAPAKEAVEEDVPQVETQTY* |
Ga0066787_100678241 | 3300005950 | Soil | EGSTEDISMEDVLGGGVKPVAAAKEAVEEVPATVETTS* |
Ga0066696_102601461 | 3300006032 | Soil | ISMEEVLGKGTRKQPAARKEEVQEEASPVETQTF* |
Ga0075023_1006199771 | 3300006041 | Watersheds | AIDAGAEDISMEDVLGSGTKKAPAAAKEVADEVPQVESQTF* |
Ga0075029_1003877781 | 3300006052 | Watersheds | TPESASEDISMEDVLGKGVRKQPAPTKETVDEDVPQVETQTY* |
Ga0075017_1001225091 | 3300006059 | Watersheds | AGTPESASEDISMEDVLGKGVRKQPAPTKETVDEDVPQVETQTY* |
Ga0075015_1002886921 | 3300006102 | Watersheds | EDISMEDVLGAGTRKQPAAAKEDSAEVPQVETQTF* |
Ga0075015_1008738231 | 3300006102 | Watersheds | IDAGAEDISMEDVLGSGTKKAPAAAKEVADEVPQVESQTF* |
Ga0075018_105535622 | 3300006172 | Watersheds | DLNAAEDASSEEISMEDVLGAGARKQPAAAKESAGENVPQVETQTY* |
Ga0070716_1002836723 | 3300006173 | Corn, Switchgrass And Miscanthus Rhizosphere | SPEAGAEDISMEDVLGKGVRKQPAPAKETVDEDVPQVETQTY* |
Ga0068871_1002317821 | 3300006358 | Miscanthus Rhizosphere | SEDISMEDVLGKGVRKQPAAAGETADEDVPQVETQTY* |
Ga0068871_1002671844 | 3300006358 | Miscanthus Rhizosphere | DISMEDVLGGGTKKQPAPAKAAAEEAPEVETQTY* |
Ga0066658_100038551 | 3300006794 | Soil | SMEDVLGGGTRKQHSAAKQRADDEVPQVETQTYP* |
Ga0079220_120249052 | 3300006806 | Agricultural Soil | AEQEDISMEEVLGKGTRKQPVTAKEEAAEEASPVETQTF* |
Ga0075425_1017992692 | 3300006854 | Populus Rhizosphere | DSSAEDISMEDVLGAGTRRKAAAAKEEAGEDVPQVETQAY* |
Ga0075426_102610181 | 3300006903 | Populus Rhizosphere | DISMEDVLGGSARKRPEAAKEQAAEEVPQVESQHTF* |
Ga0099795_104917711 | 3300007788 | Vadose Zone Soil | EDISMEDVLGKGVRKQPAPANETVDEDVPQVETQTY* |
Ga0116135_11303462 | 3300009665 | Peatland | EDISMEDVLGAGTRKQPAAAKESVADDVPQVETQTY* |
Ga0116135_12883241 | 3300009665 | Peatland | DAGAEDISMEDVLGAGTRKQPVAAKETVADDVPQVETQTY* |
Ga0116223_102648321 | 3300009839 | Peatlands Soil | EDISMEDVLGSGTRKQSAAAKENASEDVPQVETQTY* |
Ga0126380_119351171 | 3300010043 | Tropical Forest Soil | TAEAGAEDISMEDVLGGGTKKAPATAKEEADEVPQVESQTF* |
Ga0126382_106859522 | 3300010047 | Tropical Forest Soil | AEAGFDAGSDDISMEDVLGSGTKKAPAADKETADEVPQVESQTF* |
Ga0134063_105870201 | 3300010335 | Grasslands Soil | QEDISMEEVLGKGTRKQPVAAKEEAAEEASPVETQTF* |
Ga0134126_101154701 | 3300010396 | Terrestrial Soil | TGEDISMEDVLGGSTRKRPEAAKEAAAEEVPQVESQHTY* |
Ga0138573_12028651 | 3300011089 | Peatlands Soil | EDISMEEVLGAGTRKQPVAAKESVDETIPQVETQTY* |
Ga0137392_107179811 | 3300011269 | Vadose Zone Soil | ISMEDVLGGRTRKQPDAAKERVREDVPEVETQTY* |
Ga0137389_103349681 | 3300012096 | Vadose Zone Soil | EDISMEEVLGAGTRKQAETAKEEASEVPEVETQTY* |
Ga0137389_103865821 | 3300012096 | Vadose Zone Soil | VAEAEQEDISMEEVLGKGTRKQPVTAKEEAAEEASPVETQTF* |
Ga0137399_109155712 | 3300012203 | Vadose Zone Soil | TGEDISMEDVLGGPTRKQPATAAKAEAAPQVETQTTYS* |
Ga0137362_116000321 | 3300012205 | Vadose Zone Soil | GEDISMEDVLGGGTKKAPAAAQDVADEVPQVESQTF* |
Ga0137381_106492501 | 3300012207 | Vadose Zone Soil | GAEDISMEDVLGGGTKKAPSTAQDAADEVPQVESQTF* |
Ga0137376_101261351 | 3300012208 | Vadose Zone Soil | GEDISMEEVLGAGVRKQPAAAKEAVDEEDVPQVETQTY* |
Ga0137376_109864391 | 3300012208 | Vadose Zone Soil | ISMEEVLGKGTRKQPVTAKEEAAEEASPVETQTF* |
Ga0137387_106615632 | 3300012349 | Vadose Zone Soil | EQEDISMEEVLGKGTRKQPVTAKEEAAEEASPVETQTF* |
Ga0137361_103345941 | 3300012362 | Vadose Zone Soil | GSEDISMEDVLGKGVRKQPAPANEAVDEDVPQVETQTY* |
Ga0137398_108735842 | 3300012683 | Vadose Zone Soil | SEDISMEDVLGKGVRKQPAPANETVDEDAPQVETQTY* |
Ga0137396_112378782 | 3300012918 | Vadose Zone Soil | ELQAAGAPEAGSEDISMEDVLGKGVRKQPAPANETVDEDVPQVETQTY* |
Ga0137419_107571792 | 3300012925 | Vadose Zone Soil | GEAGLDAGAEDISMEDVLGSGTKKAPAAEKAAADEVPQVESQTF* |
Ga0137416_117570222 | 3300012927 | Vadose Zone Soil | GADDSASEDISMEEVLGAGTRKQPAAAKEEEAGEVPEVETQTY* |
Ga0137407_112703091 | 3300012930 | Vadose Zone Soil | TGEDISMEEVLGAGVRKQPAAAKEAVDEDVPQVETQTY* |
Ga0153915_110600531 | 3300012931 | Freshwater Wetlands | GPGTENVSMEEVLGGGRKGPAGAKEESDVPQVETQTF* |
Ga0164300_102856891 | 3300012951 | Soil | EAGAEDISMEDVLGGGTKKAPATAQDAAEEVPRVESQTL* |
Ga0164303_100824901 | 3300012957 | Soil | EDISMEDVLGGGTKKAPATAQDAAEEVPQVESQTL* |
Ga0164303_115385672 | 3300012957 | Soil | SPEAGAEDISMEDVLGKGVRKQPAPSKETVDEDVPQVETQTY* |
Ga0153916_125922811 | 3300012964 | Freshwater Wetlands | AEAGGEDLTMEDVLGAGTRKQPAAAKAAKQEESEVPQTQTF* |
Ga0164304_117489611 | 3300012986 | Soil | EELAAAGAPESGSEDISMEDVLGKGVRKQPAAASETADEDVPQVETQTY* |
Ga0164305_100358265 | 3300012989 | Soil | AEAGAEDISMEDVLGGGTKKAPATAQDAAEEVPQVESQTL* |
Ga0157373_100494224 | 3300013100 | Corn Rhizosphere | AAAGAPESGSEDISMEDVLGKGVRKQPAAAGETADEDVPQVETQTY* |
Ga0182024_115409581 | 3300014501 | Permafrost | SAPAEGAVEAGAEDISMEDVLGTGGRKQPAVVEEDEGEVPHQLETRTF* |
Ga0132258_103723766 | 3300015371 | Arabidopsis Rhizosphere | SEAAPDTAAEAGGEDISMEEVLGAGVRKQPAASKEAVDEDVPQVETQTY* |
Ga0132257_1000244451 | 3300015373 | Arabidopsis Rhizosphere | ISMEDVLGKGVRKQPAAAGETADEDVPQVETQTY* |
Ga0187802_102252692 | 3300017822 | Freshwater Sediment | AEEAAAARAADGASQFADVEEAGAEDISMEDVLDGGARKQPAAAKDDASADVPQVETQTY |
Ga0187802_102957031 | 3300017822 | Freshwater Sediment | AEDAGTEDISMEDVLGAGTRKQPAAAKDTVAEDVPQVETQTY |
Ga0187825_100734583 | 3300017930 | Freshwater Sediment | GEDISMEDVLGGGTKKAAAAAQDAADEVPQVESQTF |
Ga0187819_107833371 | 3300017943 | Freshwater Sediment | AEDISMEDVLGGDARKQPAAAPEPEADIPQVETRSF |
Ga0187785_106330581 | 3300017947 | Tropical Peatland | DISMEEVLGAGVRKQPAPAKEVVDEDVPQVETQTY |
Ga0187872_100456561 | 3300018017 | Peatland | EAGTEDISMEEVLGAGTRKQPVAAKESVDEAVPQVETQTY |
Ga0187855_101627991 | 3300018038 | Peatland | ASEDGTGEDISMEDVLGAGTRKQPAAAKESVADDVPQVETQTY |
Ga0187765_103313031 | 3300018060 | Tropical Peatland | ATLHAASEEESAAAAVVPAGEDAEDISMEDVLGAGTRKQPAAAKQETEVPQVETQTF |
Ga0187770_100168235 | 3300018090 | Tropical Peatland | VGMTASADDSAAEEISMEEVLGAGMPKQPATHNEAGEAAPEVEHQTH |
Ga0193715_10900141 | 3300019878 | Soil | EAGAEDISMEEVLGSGVRKQPAAAKEVVDEDVPQVETQTY |
Ga0210407_109294662 | 3300020579 | Soil | SESSEEAIGEDISMEDVLGAGTKKAPAAAKEVAEEVPQVESQTF |
Ga0179596_103285351 | 3300021086 | Vadose Zone Soil | LQAAGAPEAGSEDISMEDVLGKGVRKQPAPANEAVDEDVPQVETQTY |
Ga0210397_107330642 | 3300021403 | Soil | DDGTGEDISMEDVLGAGTRKQPSAAKESVAEDVPQVETQTY |
Ga0210394_103964252 | 3300021420 | Soil | DISMEDVLGAGTRKQPSAAKESVSEDIPQVETQTY |
Ga0126371_127177452 | 3300021560 | Tropical Forest Soil | GEMPGDDISMEDVLGGGTKKAPAAAKEEADEVPQVESQTF |
Ga0207656_101290031 | 3300025321 | Corn Rhizosphere | PESGSEDISMEDVLGKGVRKQPAAAGETADEDVPQVETQTY |
Ga0208480_11365582 | 3300025633 | Arctic Peat Soil | TGTETEDISMEEVLGAGTRKQPIAAKESAVEAPEVEHQTF |
Ga0207692_104308112 | 3300025898 | Corn, Switchgrass And Miscanthus Rhizosphere | EHAAEASGEDISMEDVLGGGTKKAPAAAQDVADEVPQVESQTF |
Ga0207645_110213432 | 3300025907 | Miscanthus Rhizosphere | AGAEDISMEDVLGKGVRKQPAPAKETVDEDVPQVETQTY |
Ga0207695_105443822 | 3300025913 | Corn Rhizosphere | EDISMEDVLGGGVRKQPAAAKDEEPADAPQVETQAF |
Ga0207700_110540321 | 3300025928 | Corn, Switchgrass And Miscanthus Rhizosphere | EGAETTGEDISMEDVLGGSTRKRPEAAKEAAAEEVPQVESQHTY |
Ga0207665_112764092 | 3300025939 | Corn, Switchgrass And Miscanthus Rhizosphere | IAEGDSATEDISMEDVLGAGTRRKAAAAKEEAGEDVPQVETQAY |
Ga0207668_114903472 | 3300025972 | Switchgrass Rhizosphere | AAAGAPESGSEDISMEDVLGKGVRKQPAAASETADEDVPQVETQTY |
Ga0207676_101875231 | 3300026095 | Switchgrass Rhizosphere | TGEEISKEDVLGGGTKKQPAPAKAAAEEAPEVETQTY |
Ga0208774_10497531 | 3300026109 | Rice Paddy Soil | ILAAEAGAGEDISMEDVLGGGANRKQPAAAKAAADSDEVPQIETQTY |
Ga0209687_12490412 | 3300026322 | Soil | SASEDTGEDISMEDVLGGGTKKQPAPAKAAAEEAPEVETQTY |
Ga0209152_102212912 | 3300026325 | Soil | SSAEDISMEDVLGAGTRRKAAAAKEEAGEDVPQVETQAY |
Ga0209802_10890773 | 3300026328 | Soil | AESGAEEAGAEDISMEEVLGAGTRKQAETAKEEAGEVPEVETQTY |
Ga0209057_11494311 | 3300026342 | Soil | QEDISMEEVLGKGTRKQPVAAKEEAAEEASPVETQTF |
Ga0257164_10565742 | 3300026497 | Soil | EDISMEDVLGKGVRKQAAPAIENVDEDVPQVETQTY |
Ga0209808_11487862 | 3300026523 | Soil | LTASDSSTEDISMEDVLGAGTRRKAAAAKEEAGEDVPQVETQAY |
Ga0209160_10990051 | 3300026532 | Soil | AEEAGAEDISMEEVLGAGTRKQAETAKEEAGEVPEVETQTY |
Ga0209161_104789812 | 3300026548 | Soil | GDSSAEDISMEDVLGAGTRRKAAAAKEEAGEDVPQVETQAY |
Ga0209474_105532392 | 3300026550 | Soil | GTEDISMEDVLGGGTKKQPSAAKEGAEELPQVETQTYS |
Ga0209734_10421572 | 3300027535 | Forest Soil | SDAGSEDISMEDVLGKGVRKQPAAAKETVDEDVPQVETQTY |
Ga0208043_11672171 | 3300027570 | Peatlands Soil | ASEDAGAEDISMEDVLGAGTRKQPVAAKESVADDVPQVETQTY |
Ga0209220_10933321 | 3300027587 | Forest Soil | GSEDISMEDVLGKGTRKQPAPAKETVDEDVPQVETQTY |
Ga0209733_10864021 | 3300027591 | Forest Soil | ISAADDSGGEDISMEDVLGAGTRKQPAATKDTVAEDIPQVETQTY |
Ga0208324_10487641 | 3300027604 | Peatlands Soil | RGMDINAVEDAGTEDISMEDVLGAGTRKQPAAAKDAVAEEVPQVETQTY |
Ga0209810_13636442 | 3300027773 | Surface Soil | IMAAEAGAGEDISMEDVLGGPTRKQPAPAKTQADTDEVPQIETQTY |
Ga0209060_105407072 | 3300027826 | Surface Soil | EIMAAEAGAGEDISMEDVLGGPARKQPAAAKAQADTDEVPQIETQTY |
Ga0209693_105295471 | 3300027855 | Soil | GGEDISMEDVLGGGTKKAPSAAQDVADEVPQVESQTF |
Ga0209275_105895661 | 3300027884 | Soil | ESGIDIDASEDGAAEDISMEDVLGAGTRKQPVAAKEAADETVPQVETQTY |
Ga0209068_105095822 | 3300027894 | Watersheds | EAGAEDISMEDVLGKGVRKQPAPANETVDEDVPQVETQTY |
Ga0209068_108946212 | 3300027894 | Watersheds | GGVDIRAAEDAGAEDISMEDVLGAGTRKQPAAAKDSTAEDVPQVETQTY |
Ga0209526_104251692 | 3300028047 | Forest Soil | QAAGAPEAGSEDISMEDVLGKGVRKQPAPANETVDEDVPQVETQTY |
Ga0137415_112259692 | 3300028536 | Vadose Zone Soil | GADDSASEDISMEEVLGAGTRKQPAAAKEEEAGEVPEVETQTY |
Ga0170823_105665892 | 3300031128 | Forest Soil | GSEDISMEDVLGKGVRKQPAAAKETVDEDVPQVETQTY |
Ga0307468_1001295083 | 3300031740 | Hardwood Forest Soil | PAAEAAGDDISMEDVLGGGTKKAPASAPESADEVPQVESQTF |
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