NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F075054

Metagenome / Metatranscriptome Family F075054

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F075054
Family Type Metagenome / Metatranscriptome
Number of Sequences 119
Average Sequence Length 76 residues
Representative Sequence MTYKEHLIFVAAQRDAGGCFWLPMASVCWSEGERKHVVSLKGRPQDRFVLLTDAENSAVSIAHQWVDNRRQNSSSG
Number of Associated Samples 106
Number of Associated Scaffolds 119

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 74.79 %
% of genes near scaffold ends (potentially truncated) 27.73 %
% of genes from short scaffolds (< 2000 bps) 75.63 %
Associated GOLD sequencing projects 97
AlphaFold2 3D model prediction Yes
3D model pTM-score0.68

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (53.782 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment
(14.286 % of family members)
Environment Ontology (ENVO) Unclassified
(36.975 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(48.739 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      
Full Alignment
Alignment of all the sequences in the family.
Sorting
Filter
Selection
Vis.elements
Color scheme
Extras
Export
Help

IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98.100
1INPhiseqgaiiFebDRAFT_1014465451
2F14TC_1002557791
3F14TC_1003412072
4F14TC_1007642782
5JGI10216J12902_1123856972
6Ga0055490_101316441
7Ga0055488_100949581
8Ga0055488_101938452
9Ga0062595_1008942771
10Ga0058861_120225112
11Ga0062594_1015766922
12Ga0065707_103099053
13Ga0070668_1001094911
14Ga0070671_1011183641
15Ga0070674_1005651112
16Ga0070674_1007012703
17Ga0070659_1009394051
18Ga0070700_1012539232
19Ga0070662_1012499382
20Ga0070679_1000448573
21Ga0070684_1019645682
22Ga0070672_1016239783
23Ga0070695_1014261801
24Ga0070702_1002278471
25Ga0070702_1017184192
26Ga0068866_105654532
27Ga0075417_103001641
28Ga0075422_103032351
29Ga0075428_1000335706
30Ga0075421_1009664342
31Ga0075431_1000173098
32Ga0075433_112124331
33Ga0075434_1018470772
34Ga0075419_106778632
35Ga0105095_104423621
36Ga0111539_100674522
37Ga0114129_104059902
38Ga0114129_128348192
39Ga0105243_104924941
40Ga0111538_100588237
41Ga0075423_122362612
42Ga0118657_1001461811
43Ga0105249_101170293
44Ga0105347_100038212
45Ga0105058_10680892
46Ga0134126_122490311
47Ga0134127_129898222
48Ga0134123_100910754
49Ga0136851_100427036
50Ga0137326_10968192
51Ga0137430_10385952
52Ga0157337_10006752
53Ga0157351_10450071
54Ga0157342_10595972
55Ga0157315_10093803
56Ga0157334_10104361
57Ga0137358_101147591
58Ga0137394_101653453
59Ga0137407_122358301
60Ga0164303_104704352
61Ga0164301_111595712
62Ga0075325_10366141
63Ga0075327_10098354
64Ga0180086_11686731
65Ga0132258_139286011
66Ga0132256_1001957441
67Ga0132257_1015229282
68Ga0163161_101143343
69Ga0163161_116956332
70Ga0184610_10289351
71Ga0184608_101899792
72Ga0184638_12844632
73Ga0184626_100101752
74Ga0184626_100886592
75Ga0184621_100583132
76Ga0184621_103291191
77Ga0184623_100065467
78Ga0184619_102768332
79Ga0184611_10015794
80Ga0184618_100283473
81Ga0184635_100056066
82Ga0184635_100765551
83Ga0184624_102112842
84Ga0184609_100896241
85Ga0184627_100133135
86Ga0184625_106506572
87Ga0193739_10820382
88Ga0193717_11800352
89Ga0210382_102911061
90Ga0212128_102824712
91Ga0209827_103390701
92Ga0207642_109782161
93Ga0207707_111410361
94Ga0207660_100962595
95Ga0207657_112626212
96Ga0207681_111715512
97Ga0207701_100028538
98Ga0207706_103863632
99Ga0207706_114418602
100Ga0207712_101416743
101Ga0207668_102356082
102Ga0209438_10419141
103Ga0209438_12267971
104Ga0256867_100056355
105Ga0208685_10011968
106Ga0209592_13218262
107Ga0209814_105694861
108Ga0207428_100275336
109Ga0209536_1001618902
110Ga0268264_104425762
111Ga0268264_115331231
112Ga0247612_11023291
113Ga0302046_109433802
114Ga0307497_103671592
115Ga0310813_100341314
116Ga0307468_1018207682
117Ga0310906_100442693
118Ga0310890_114278251
119Ga0310810_100311225
Powered by MSAViewer


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 23.08%    β-sheet: 26.92%    Coil/Unstructured: 50.00%
Feature Viewer
Position :
0
Zoom :
x 1
+ Add Multiple Variants

Enter the variants

Position

Original

Variant

Get Predictions
Get Predictions

Enter the variants

Position

Original

Variant

10203040506070MTYKEHLIFVAAQRDAGGCFWLPMASVCWSEGERKHVVSLKGRPQDRFVLLTDAENSAVSIAHQWVDNRRQNSSSGSequenceα-helicesβ-strandsCoilSS Conf. score
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer

WebGL does not seem to be available.

This can be caused by an outdated browser, graphics card driver issue, or bad weather. Sometimes, just restarting the browser helps. Also, make sure hardware acceleration is enabled in your browser.

For a list of supported browsers, refer to http://caniuse.com/#feat=webgl.

Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.68
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Visualization
All Organisms
Unclassified
53.8%46.2%
Download SVG
Download PNG
Download CSV
Powered by ApexCharts

Associated Scaffolds





 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Visualization
Freshwater Sediment
Groundwater Sediment
Marine Sediment
Natural And Restored Wetlands
Mangrove Sediment
Thermal Springs
Soil
Groundwater Sediment
Mangrove Sediment
Soil
Vadose Zone Soil
Terrestrial Soil
Unplanted Soil
Switchgrass Rhizosphere
Soil
Soil
Grasslands Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Soil
Hardwood Forest Soil
Soil
Natural And Restored Wetlands
Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Corn Rhizosphere
Groundwater Sand
Host-Associated
Arabidopsis Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Arabidopsis Rhizosphere
Switchgrass Rhizosphere
Populus Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Corn Rhizosphere
Arabidopsis Rhizosphere
4.2%14.3%8.4%3.4%3.4%12.6%3.4%4.2%
Download SVG
Download PNG
Download CSV
Powered by ApexCharts



Associated Samples


Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
INPhiseqgaiiFebDRAFT_10144654513300000364SoilYKEHLIFVAIQRDAGDCFWLPVASVSWTEREIKRVVSLKGRPQDRFVYSTEAENSAILIAQKWVDDHSQNSSLD*
F14TC_10025577913300000559SoilMTYKEHLIFVATQRDAGGCFWLPMASVCWSDGIRKHVVSLKGRPQDRFVLLTDAENSAVSIAHKWVDDHSQNGSSG*
F14TC_10034120723300000559SoilMTYKEHLIFVAIQRDAGDCFWLPVASVSWTEREIKRVVSLKGRPQDRFVYSTEAENSAILIAQKWVDDHSQKSSLD*
F14TC_10076427823300000559SoilMTYKEHLIFVDTQRDAGGCFWLPLASVCWSEGEKRHVVSIKGRPQDRFIYAAEAETSAVEIAREWVDNHVPNGDFS*
JGI10216J12902_11238569723300000956SoilFVDTQRDAGGCFWLPLASVCWSEREKGHVVSIKGRPQDRFIYASEAETCAIELAREWVDAHVQNGHFS*
Ga0055490_1013164413300004052Natural And Restored WetlandsMNYKEHQIFVAIRRDAGGCFWLPLANVCWSEGEKKNLVSIKGRPHDRFLYPSEAEAAAVEIAREWVDNHVRNSSSG*
Ga0055488_1009495813300004070Natural And Restored WetlandsMNYKEHQIFVAIRRDAGGCFWLPLANVCWSEGERKNLVSIKGRPQDRFLYPSEAEAAAVEIAREWVDHHVQTGSAG*
Ga0055488_1019384523300004070Natural And Restored WetlandsMTYKEHQIFVAVRRDAGGCFWLPLANVCWSEGEKKNLVSIKGRPHDRFLYPSEAEAAAVEIAREWVDNHVRNSSSG*
Ga0062595_10089427713300004479SoilMTYKEHLIFVAIQRDAGDCFWLPVASVSWTEREIKRVVSLKGRPQDRFVYSTEAENSAILIAQKWVDDHSQNSSLD*
Ga0058861_1202251123300004800Host-AssociatedMTYKKHLIFVAAQRDAGGCFWLPIASVSWSEGERKVVIPLKGHPQDRFIHLIEAEKHAISMARKWVDSHSQNGSSG*
Ga0062594_10157669223300005093SoilMTYKEHLIFVAAQRDAGGCFWLPIVSVSWSEGERKHVVSLKGRPQDRFVLLTDAENSAVSIAHQWVDNRRQNSSSG*
Ga0065707_1030990533300005295Switchgrass RhizosphereMTYKEHLIFVAIQRDAGDCFWLPVASVSWTEREIKRVVSLKGHPQDRFVYSTEAENSAILIAQKWVDDHSQKSSLD*
Ga0070668_10010949113300005347Switchgrass RhizosphereMTYKEHLIFVAAQRDAGGCFWLPIVSVSWSEGERKHVVSLKGRPQDRFVLLTDAENSAVSIAHQWVDNRRQNGSLG*
Ga0070671_10111836413300005355Switchgrass RhizosphereTYKEHLIFVAAQRDAGGCFWLPMVTVSWSEGERKHVVSLKGRPQDRFVLLTDAENSAVSIAHQWVDNRRQNGS*
Ga0070674_10056511123300005356Miscanthus RhizosphereMTYKEHLIFVAAQRDAGGCFWLPMASVCWSEGVRKHVVSLKGRPQDRFVLLTDAENSAVSIAHQWVDDHS*
Ga0070674_10070127033300005356Miscanthus RhizosphereMTYKEHLIFVAIQRDAGDCFWLPVASVSWTEREIKRVVSLKGHPQERFVYSTEAENSAILIAQKWVDDHSQKSSLD*
Ga0070659_10093940513300005366Corn RhizosphereMTYKKHLIFVAAQRDAGDCFWLPIASVSWSEGERKVVIPLKGHPQDRFIHLVEAEKHAISMARKWVDSHSQNGSSG*
Ga0070700_10125392323300005441Corn, Switchgrass And Miscanthus RhizosphereMTYKEHLIFVAAQRDPGGCFWLPVASVCWSEGERKHVVSLKGRPQDRFVLLTDAENSAVSIAHQWVDNRRQNGS
Ga0070662_10124993823300005457Corn RhizosphereADRDFETPMTYKEHLIFVAIQRDAGDCFWLPVASVSWTEREIKRVVSLKGHPQDRFVYSTEAENSAILIAQKWVDDHSQKSSLD*
Ga0070679_10004485733300005530Corn RhizosphereMTYKKHLIFVAAQRDAGDCFWLPIASVSWSEGERKVVIPLKGHPQDRFIHLIEAEKHAISMARKWVDSHSQNGSSG*
Ga0070684_10196456823300005535Corn RhizosphereMTYKKHLIFVAAQRDAGGCFWLPIASISWSEGERRVVIPLKGHPQDRFIHLIEAEKHAISMARKWVDSHSQNGSSG*
Ga0070672_10162397833300005543Miscanthus RhizosphereMTYKEHLIFVAAQRDAGGCFWLPMASVCWSEGVRKHVVSLKGRPQDRFVLLTDAENSAVSIAHQWVDNRRQNGS*
Ga0070695_10142618013300005545Corn, Switchgrass And Miscanthus RhizosphereMTYKEHLIFVAAQRDAGGCFWLPIASVSWSEGERKVVIPLKGHPQDRFIHLVEAEKHAISMARKWVDSHSQNGSSG*
Ga0070702_10022784713300005615Corn, Switchgrass And Miscanthus RhizosphereMTYKEHLIFVAAQRDAGGCFWLPMASVCWSEGVRKHVVSLKGRPQDRFVLLTDAENSAVSIAHQWVDNRRQNSSSG*
Ga0070702_10171841923300005615Corn, Switchgrass And Miscanthus RhizosphereMTYKEHLIFVAIQRDAGDCFWLPVASVSWTEREIKRVVSLKGHPQDRFVYSTEAENSAIAIARKWVDNHIQNCSSG*
Ga0068866_1056545323300005718Miscanthus RhizosphereTETRMTYKEHLIFVAAQRDAGGCFWLPIVSVSWSEGERKHVVSLKGRPQDRFVLLTDAENSAVSIAHQWVDNRRQNGS*
Ga0075417_1030016413300006049Populus RhizosphereMTYKEHLIFVASQRDAGGCFWLPLANVCWSEGEKKHVVSIKGRPQDRFVYASEAETSAIEIARTWVDNHIRNDPSKLATLS*
Ga0075422_1030323513300006196Populus RhizosphereMTYKEHLIFVAIQRDAGNCFWLPVASVSWTEREIKRVVSLKGRPQDRFVYSTEAENSAILIAQKWVDDHSQKSSLD*
Ga0075428_10003357063300006844Populus RhizosphereMTYKEHLIFVATQRDAGGCFWLPMASVCWSDGIRKHVVSLKGRPQDRFVLLTDAESSAVSIAHKWVDDHSQNGSSG*
Ga0075421_10096643423300006845Populus RhizosphereMTYKEHLIFVATQRDAGDCFWLPVASVSWSEREIKRVVSLKGRPQDRFVYSTEAENSAIAIARKWVDNHIQNCSSG*
Ga0075431_10001730983300006847Populus RhizosphereMTYKEHLIFVATQRDAGGCFWLPMASVCWSDGIRKHVVSLKGRPQDRFVLLTDAENSAVSIAHKWVDDHSQNSSSG*
Ga0075433_1121243313300006852Populus RhizosphereMTYKEHLIFVAIQRDAGDCFWLPVASVSWTEREIKRVVSLKGHPQERFVYSTEAENSAILIAQKWVDDHSQNSSLD*
Ga0075434_10184707723300006871Populus RhizosphereYKEHLIFVAIQRDAGDCFWLPVASVSWTEREIKRVVSLKGRPQDRFVYSTEAENSAILIAQKWVDDHSQKSSLD*
Ga0075419_1067786323300006969Populus RhizosphereMTYKEHLIFVATQRDAGGCFWLPMASVCWSDGIRKHVVSLKGRPQDRFVLLTDAESSAVCIAHKWVDDHSQNGSSG*
Ga0105095_1044236213300009053Freshwater SedimentMKARMTYKEHLIFVATQRDAGGCFWLPVASVSWSEGETKHVVCIKGRPQDRFVYSTEAENCAISIARKWVD
Ga0111539_1006745223300009094Populus RhizosphereMTYKEHLIFVATQRHAGGCFWLPMASVCWSDGIRKHVVSLKGRPQDRFVLLTDAENSAVSIAHKWVDDHSQNSSSG*
Ga0114129_1040599023300009147Populus RhizosphereMTYKEHLIFVATQRDAGGCFWLPLASVCWSEGEKKHVVPIKGRPQDRFIHASEAETSAIELAREWVDNHIRNDPRLESLTS*
Ga0114129_1283481923300009147Populus RhizosphereMTYKEHLIFVATQRDAGDCFWLPVASVSWSEREIKRVVSLKGHPQERFVYSTEAENSAILIAQKWVDDHSQKSSLD*
Ga0105243_1049249413300009148Miscanthus RhizosphereYRTETRMTYKEHLIFVAAQRDAGGCFWLPMASVCWSEGVRKHVVSLKGRPQDRFVLLTDAENSAVSIAHQWVDNRRQNGSSG*
Ga0111538_1005882373300009156Populus RhizosphereMTYKEHLIFVAIQRDAGDCFWLPVASVSWTEREMKRVVSLKGRPQDRFVYSTEAENSAILIAQKWVDDHSQKSSLD*
Ga0075423_1223626123300009162Populus RhizosphereMTYKEHLIFVATQRDAGDCFWLPVASVSWSEREIKRVVSLKGRPQDRFVYSTEAENSAIAIA
Ga0118657_10014618113300009506Mangrove SedimentMTYKEHLVFVATRRDAGDCFWLPLVNVCWSEGEKKHMISIKGRPQDRFVYSTEAEASAVGIAREWVDNHVRNGPLA*
Ga0105249_1011702933300009553Switchgrass RhizosphereMTYKEHLIFVAAQRDAGGCFWLPIVSVSWSEGERKYVVSLKGRPQDRFVLLTDAENSAVSIAHQWVDDHS*
Ga0105347_1000382123300009609SoilMTYKEHQIFVAIRRDAGGCFWLPLANVCWSEGEKKNLVSIKGRPQDRFVYPTEAEAAAVEIAREWVDNHVRNASSG*
Ga0105058_106808923300009837Groundwater SandMAYKEHLIFVATRRDAGGCFWLPLANVCWSEGEKKHVVSIKGRPQDRFMYASEAETSAIELAREWVDNHIRNDPQARMFDILTTASK*
Ga0134126_1224903113300010396Terrestrial SoilMTYKKHLIFVAAQRDAGGCFWLPIASVSWSEGERKVVIPLKGHPQDRFIHLVEAEKHAISMARKWVDSHSQNGSSG*
Ga0134127_1298982223300010399Terrestrial SoilMTYKEHLIFVAIQRDAGDCFWLLVVSVSWTEREIKRVVSLKGHPQERFVYSTEAENSAILIAQKWV
Ga0134123_1009107543300010403Terrestrial SoilMTYKEHLIFVAAQRDAGGCFWLPMASVCWSEGERKHVVSLKGRPQDRFVLLTDAENSAVSIAHQWVDNRRQNSSSG*
Ga0136851_1004270363300010413Mangrove SedimentMTYKEHLVFVATRRDAGDCFWLPLVNVCWSEGEKKHMVSIKGRPQDRFVYSTEAEASAVGIAREWVDNHVRNGPLA*
Ga0137326_109681923300011417SoilVAIRRDAGGCFWLPLANVCWSEGEKKNLVSIKGRPQDRFVYPTEAEAAAVEIAREWVDNHVRNASSG*
Ga0137430_103859523300012041SoilMTYKEHQIFVAIRRDAGGCFWLPLANVCWSEGEKKNLVSIKGRPQDRFVYPTEAEAAAVEIAREWVDNHVRNASS
Ga0157337_100067523300012483Arabidopsis RhizosphereLIFVAAQRDAGGCFWLPMASVCWSEGVRKHVVSLKGRPQDRFVLLTDAENSAVSIAHQWVDNRRQNGS*
Ga0157351_104500713300012501Unplanted SoilMTYKEHLIFVAIQRDTGDCFWLPVASVSWTEREIKRVVSLKGHPQDRFVYSTEAENSAILIAQKWVDDHSQKSSLD*
Ga0157342_105959723300012507Arabidopsis RhizosphereMTYKEHLIFVAAQRDAGGCFWLPMASVCWSEGVRKHVVSLKGRPQDRFVLLTDAENSAVSIAHQWVDNRRQNGSLG*
Ga0157315_100938033300012508Arabidopsis RhizosphereMTYKEHLIFVAAQRDAGGCFWLPMASVCWSEGVRKHVVSLKGRPQDRFVLLTDAENSAVSIAHQWVDDHRQNGSLG*
Ga0157334_101043613300012509SoilMTYKEHLIFVAAQRDAGGCFWLPMASVCWSEGVRKHVVSLKGRPQDRFVLLTDAENSAVSIAHQWVDNRRQNGSSG*
Ga0137358_1011475913300012582Vadose Zone SoilMTYKEHLIFVAAQRDAGDCFWLPVVSVSWSEGERKHVVSLKGRPQDRFVLLTDAENSAVSIAHKWVDNRRQNGS*
Ga0137394_1016534533300012922Vadose Zone SoilMTYKEHLIFVATQRDAGDCFWLPVASVSWSEREIKRVVSLKGRPQDRFVYSTEAENSAIAIARKWVDNHSHDQIS*
Ga0137407_1223583013300012930Vadose Zone SoilMTYKEHLIFVAAQRDAGGCFWLPVVSVSWSEGERKHVVSLKGCPQDRFVLLTDAENSAVSIAHQWVDNRRQNSSSG*
Ga0164303_1047043523300012957SoilMTYKEHLIFVAAQRDAGGCFWLPIVSVSWSEGERKYVVSLKGRPQDRFVLLTDAENSAVSIAHQWVDNRRQNSSSG*
Ga0164301_1115957123300012960SoilMTYKEHLIFVAIQRDAGDCFWLPVASVSWTEREIKRVVSLKGHPQDRSVYSTEAENSAILIAQKWVDDHSQKSSLD*
Ga0075325_103661413300014270Natural And Restored WetlandsMTYKEHQIFVAIRRDAGGCFWLPLANVCWSEGEKKNLVSIKGRPHDRFLYPSEAEAAAVEIAREWIDNHVQTGSAG*
Ga0075327_100983543300014272Natural And Restored WetlandsMTYKEHQVFVAIRRDAGGCFWLPIANVCWSEGEKKNLVSIKGRPQDRFLYPSEAEAAAKEIACEWVDNHVRNSSSG*
Ga0180086_116867313300014883SoilMKARMTYKEHLIFVATQREAGGCFWLPVASVSWSEGETKHVVCIKGRPQDRFVYSTEAENCAISIARKW
Ga0132258_1392860113300015371Arabidopsis RhizosphereTPMTYKEHLIFVAIQRDAGDCFWLPVASVSWTEREIKRVVALKGRPQDRFVYSTEAENSAILIAQKWVDDHSQNSSLD*
Ga0132256_10019574413300015372Arabidopsis RhizosphereMTYKEHLIFVAAQRDAGGCFWLPIVSVCWSEGVRKHVVSLKGRPQDRFVLLTDAENSAVSIAHKWVDDHSQNGSSG*
Ga0132257_10152292823300015373Arabidopsis RhizosphereETPMTYKEHLIFVAIQRDAGDCFWLPVASVSWTEREMQRVVSLKGHPQDRFVYSTEAENSAILIAQKWVDDHSQKSSLD*
Ga0163161_1011433433300017792Switchgrass RhizosphereMTYKEHLIFVAAQRDAGGCFWLPMVTVSWSEGERKHVVSLKGRPQDRFVLLTDAENSAVSIAHQWVDNRRQNGS
Ga0163161_1169563323300017792Switchgrass RhizosphereMTYKEHLIFVAIQRDAGDCFWLPVASVSWTEREIKRVVSLKGRPQYRFVYSTEAENSAILIAQKWVDDHSQNSSLD
Ga0184610_102893513300017997Groundwater SedimentMTYKEHLIFVATQRDAGDCFWLPLANVCWSEGENNHLISIKGRPQDRFLYASEAETSAIEIAREWVDTHIRNAPSG
Ga0184608_1018997923300018028Groundwater SedimentMTYKEHQIFVASQRDAGDCFWLPLASVCWSEGENNRLVSIKGRAQDRFIYASEAETSAVETAREWVDTHVQNGPSGENL
Ga0184638_128446323300018052Groundwater SedimentMTYKEHLIFVATQRDAGDCFWLPLANVCWSEGENNHLISIKGRPQDRFLYASEAETSAVEIAREWVDTHVQNGPSG
Ga0184626_1001017523300018053Groundwater SedimentMTYKEHLIFVATQRDAGDCFWLPLANVCWSEGENNHLVSIKGRPQDRFLYASEAETSAIEIARKWVDNHVGMALGVGYVR
Ga0184626_1008865923300018053Groundwater SedimentMTYKEHLIFVATQRDAGDCFWLPLANVCWSEGENNHLVSIRGRAQDRFLYASEAETSAVEIAREWVDTHVQNGPSGENL
Ga0184621_1005831323300018054Groundwater SedimentMTYKEHQIFVASQRDAGDCFWLPLASVCWSEGENNRLVSIKGRPQDRFLYASEAETSAVEIAREWVDTHVQNGPSG
Ga0184621_1032911913300018054Groundwater SedimentQRDAGGCFWLPLANVCWSEGEMKHLVSLKGRPQDRFIYISEAETSAIEIARTWVDNRVPNGSGPPLR
Ga0184623_1000654673300018056Groundwater SedimentSRMTYKEHLIFVATQRDAGDCFWLPLANVCWSEGENNHLVSIKGRPQDRFLYASEAETSAIEIARKWVDNHVGMALGVGYVR
Ga0184619_1027683323300018061Groundwater SedimentMTYKEHLIFVATQRDAGGCFWLPLANVCWSEGEMKHMVSLKGRPQDRFIYISEAETSAIEIARTWVDNRVPNGSGPPLR
Ga0184611_100157943300018067Groundwater SedimentMTYKEHLIFVAAQRDPGGCFWLPVVSVSWSEGERKHVVSLKGCPQDRFVLLTDAENSAVSIAHQWVDNRRQNGSSG
Ga0184618_1002834733300018071Groundwater SedimentLANVCWSEGEMKHLVSLKGRPQDRFIYISEAETSAIEIARTWVDNRVPNGSGPPLR
Ga0184635_1000560663300018072Groundwater SedimentMTYKEHLIFVAAQRDAGGCFWLPMVSVSWSEGERKHVVSLKGRPQDRFVLLTDAENSAVSIAHQWVDNRRQNGS
Ga0184635_1007655513300018072Groundwater SedimentMTYKEHLIFAAIQRDAGDCFWLPVASVSWTEREIKRVVSLKGRPQDRFVYSTEAENSAILIAQKWVDDHSQKSSLD
Ga0184624_1021128423300018073Groundwater SedimentPMTYKEHLIFAAIQRDAGDCFWLPVASVSWTEREIKRVVSLKGRPQDRFVYSTEAENSAILIAQKWVDDHSQKSSLD
Ga0184609_1008962413300018076Groundwater SedimentMTYKEHLIFVATQRDAGDCFWLPLANVCWSEGENNHLVSIKGRPQDRFLYASEAETSAVEIAREWVDTHVQNGPSG
Ga0184627_1001331353300018079Groundwater SedimentMPYKEHLIFVATQRDAGDCFWLPLANVCWSEGENNHLVSIKGRPQDRFLYASEAETSAIEIARKWVDNHVGMALGVGYVR
Ga0184625_1065065723300018081Groundwater SedimentMTYKEHLIFVAAQRDPGGCFWLPVVSVSWSEGERKHVVSLKGCPQDRFVLLTDAENSAVSIAHQWVDNRRQNGS
Ga0193739_108203823300020003SoilMTYKEHLIFVATQRDAGDCFWLPLANVCWSEGENNHLVSIKGRPQDRFLYASEAETSAIEIAREWVDTHVQHGPLD
Ga0193717_118003523300020060SoilMTYKEHLIFVATQRDAGGCFWLPVASVSWSEGERKHVVCIKGRPQDRFVYSTEAENSAISIARQWVDDHR
Ga0210382_1029110613300021080Groundwater SedimentMTYKEHLIFVATQRDAGGCFWLPLANVCWSEGEMKHLVSLKGRPQDRFIYISEAETSAIEIARTWVDNRVPNGSGPPLR
Ga0212128_1028247123300022563Thermal SpringsMTYKEHLIFVATRRDAGGCFWLPLAVVCWSEGEKKHVVSIKGRPQDRFVYASEAETSAVEIASAWVDTHVENGF
Ga0209827_1033907013300025149Thermal SpringsMTYKEHLIFVATRRDAGGCFWLPLANVCWSEGEKKHVVSIKGRPQDRFVYASEAETSAVEIASAWVDTHVENGF
Ga0207642_1097821613300025899Miscanthus RhizosphereMTYKEHLIFVAIQRDAGDCFWLPVASVSWTEREIKRVVSLKGHPQDRFVYSTEAENSAILIAQKWVDDHSQKSSLD
Ga0207707_1114103613300025912Corn RhizosphereMTYKKHLIFVAAQRDAGDCFWLPIASVSWSEGERKVVIPLKGHPQDRFIHLVEAEKHAISMARKWVDSHSQNGSSG
Ga0207660_1009625953300025917Corn RhizosphereRRRDDSARMTYKKHLIFVAAQRDAGDCFWLPIASVSWSEGERKVVIPLKGHPQDRFIHLIEAEKHAISMARKWVDSHSQNGSSG
Ga0207657_1126262123300025919Corn RhizosphereMTYKKHLIFVAAQRDAGDCFWLPIASVSWSEGERKVVIPLKGHPQDRFIHLIEAEKHAISMARKWVDSHSQNGSSG
Ga0207681_1117155123300025923Switchgrass RhizosphereWKLRRVDRDFETPMTYKEHLIFVAIQRDAGDCFWLPVASVSLTEREIKRVVYLKGRPQDRFVYSTEAENSAILIAQKWVDDHSQKSSLD
Ga0207701_1000285383300025930Corn, Switchgrass And Miscanthus RhizosphereMTYKEHLIFVAAQRDAGGCFWLPIVSVSWSEGERKHVVSLKGRPQDRFVLLTDAENSAVSIAHQWVDNRRQNGS
Ga0207706_1038636323300025933Corn RhizosphereMTYKEHLIFVAAQRDAGGCFWLPMASVCWSEGVRKHVVSLKGRPQDRFVLLTDAENSAVSIAHQWVDNRRQNGS
Ga0207706_1144186023300025933Corn RhizosphereMTYKEHLIFVAIQRDAGDCFWLPVASVSWTEREIKRVVSLRGGPQDRFVYSTEAENSAILIAQKWVDDHSQKSSLD
Ga0207712_1014167433300025961Switchgrass RhizosphereMTYKEHLIFVAAQRDAGGCFWLPMVTVSWSEGERKHVVSLKGRPQDRFVLLTDAENSAVSIAHQWVDDHS
Ga0207668_1023560823300025972Switchgrass RhizosphereMTYKEHLIFVAAQRDAGGCFWLPIVSVSWSEGERKHVVSLKGRPQDRFVLLTDAENSAVSIAHQWVDNRRQNGSLG
Ga0209438_104191413300026285Grasslands SoilEARMTYKEHLIFVAAQRDAGDCFWLPVVSVSWSEGERKHVVSLKGRPQDRFVLLTDAENSAVSIAHKWVDNRRQNGS
Ga0209438_122679713300026285Grasslands SoilMTYKEHLIFVATQRDAGDCFWLPVASVSWSEREINRVVSLKGRPQDRFVYSTEAENSAIAIARKWVDNHSHDQIS
Ga0256867_1000563553300026535SoilMTYKEHLIFSDVRRDAGDCFWLPLASVCWKEGEKKHVVSIKSRPQDRFVHAAEAEKSAIKTAREWVDNRALNCHPSVKISVI
Ga0208685_100119683300027513SoilMTYKEHQIFVAIRRDAGGCFWLPLANVCWSEGEKKNLVSIKGRPQDRFVYPTEAEAAAVEIAREWVDNHVRNASSG
Ga0209592_132182623300027731Freshwater SedimentMTYKEHLIFVATQRDAGGCFWLPVASVSWSEGETKHVVCIKGRPQDRFVYSTEAENCAISIARKWV
Ga0209814_1056948613300027873Populus RhizosphereSLRGAEARMTYKEHLIFVASQRDAGGCFWLPLANVCWSEGEKKHVVSIKGRPQDRFVYASEAETSAIEIARTWVDNHIRNDPSKLATLS
Ga0207428_1002753363300027907Populus RhizosphereQRDAGGCFWLPMASVCWSDGIRKHVVSLKGRPQDRFVLLTDAENSAVSIAHKWVDDHSQNSSSG
Ga0209536_10016189023300027917Marine SedimentMTYKKHLIFVATRRDAGDCFWLPLANVCWSEGAMKHMVSIKGRPQDRFVYSTEAEASAFGIAQEWVDNHVRKGPLG
Ga0268264_1044257623300028381Switchgrass RhizosphereMTYKEHLIFVAAQRDAGGCFWLPMASVCWSEGVRKHVVSLKGRPQDRFVLLTDAENSAVSIAHQWVDNRRQNGSLG
Ga0268264_1153312313300028381Switchgrass RhizosphereFETAMTYKEHLIFVAIQRDAGDCFWLPVASVSWTEREIKRVVSLKGHPQDRFVYSTEAENSAILIAQKWVDDHSQKSSLD
Ga0247612_110232913300030592SoilMTYKEHLIFVAAQRDAGGCFWLPVVSVSWSEGERKHVVSLKGCPQDRFVLLTDAENSAVSIAHQWVDDRRQNGSSG
Ga0302046_1094338023300030620SoilMTYKEHLIFVATRRDAGGCFWLPLANVCWSEGEKKHVVSIKGRPQDRFLYASEAETSAIEIAREWVDTHVQDGSL
Ga0307497_1036715923300031226SoilMTYKEHLIFVAAQRDAGGCFWLPMASVCWSEGVRKHVVSLKGGPQDRFVLLTDAENSAVSIAHQWVDNRRQNGSLG
Ga0310813_1003413143300031716SoilWGRLIKTSDDSARMTYKKHLIFVAAQRDAGGCFWLPIASISWSEGERRVVIPLKGHPQDRFIRLIEAEKHAISMARKWVDSHSQNGSSG
Ga0307468_10182076823300031740Hardwood Forest SoilKEYLIFVAAQRDAGGCFWLPMASVCWSEGVRKHVVSLKGRPQDRFVLLTDAENSAVSIAHQWVDNRRQNGSLG
Ga0310906_1004426933300032013SoilMTYKEHLIFVATQRDAGGCFWLPMASVCWSDGIRKHVVSLKGRPQDRFVLLTDAENSAVSIAHKWVDDHSQNGSSG
Ga0310890_1142782513300032075SoilMTYKEHLIFVAAQRDAGGCFWLPIVSVSWSEGERKHVVSLKGRPQDRFVLLTDAENSAVSIAHQWVDDHRQNGSLG
Ga0310810_1003112253300033412SoilMTYKKHLIFVAAQRDAGGCFWLPIASISWSEGERRVVIPLKGHPQDRFIHLIEAEKHAISMARKWVDSHSQNGSSG


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.