Metagenome / Metatranscriptome Family F074878

Basic Information
Family ID	F074878
Family Type	Metagenome / Metatranscriptome
Number of Sequences	119
Average Sequence Length	68 residues
Representative Sequence	MNTTDKVIVKFRFRTPRMVYSVYFNGMLLASGYDAQQLGEDYARKYGVEWLLQDGDKFYSQKGLVK
Number of Associated Samples	91
Number of Associated Scaffolds	119

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	11.76 %
% of genes near scaffold ends (potentially truncated)	32.77 %
% of genes from short scaffolds (< 2000 bps)	84.87 %
Associated GOLD sequencing projects	84
AlphaFold2 3D model prediction	No

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Unclassified (85.714 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake (21.008 % of family members)
Environment Ontology (ENVO)	Unclassified (47.059 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (62.185 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86 1ErSWdraft_4774790 22199996623 32200088927 4M3P_100329861 5RCM33_10451952 6RCM31_100357804 7B570J29624_1023552 8B570J29032_1097347324 9B570J29032_1098133093 10B570J40625_10002609116 11B570J40625_1000449545 12JGI25908J49247_100324793 13JGI25910J50241_100302924 14JGI25911J50253_100208153 15JGI25928J51866_10843841 16Ga0065166_101559781 17Ga0066180_100638073 18Ga0007787_106410891 19Ga0070374_102579431 20Ga0068876_102421052 21Ga0068876_103977372 22Ga0068872_105220773 23Ga0049083_1000121921 24Ga0049081_101339833 25Ga0049080_101275242 26Ga0078894_1001827213 27Ga0078894_1003259713 28Ga0078894_102003693 29Ga0078894_107105222 30Ga0078894_108089763 31Ga0078894_112420261 32Ga0078894_117239582 33Ga0070744_100119051 34Ga0070744_100660842 35Ga0070744_101550061 36Ga0070744_101934812 37Ga0070744_102491781 38Ga0075473_101024593 39Ga0075472_105708453 40Ga0102828_10210531 41Ga0102856_10787742 42Ga0114340_10757992 43Ga0114340_10983222 44Ga0114341_101337445 45Ga0114343_11946402 46Ga0114354_11079464 47Ga0114840_10033419 48Ga0114364_11285903 49Ga0114876_11103705 50Ga0102829_12539592 51Ga0102854_11623311 52Ga0102830_12193501 53Ga0114982_10551862 54Ga0129336_105139761 55Ga0164293_103795123 56Ga0164295_102104122 57Ga0181343_10660263 58Ga0181343_10833944 59Ga0181343_11295172 60Ga0181346_13065121 61Ga0181607_102508854 62Ga0181600_106158772 63Ga0207193_13115111 64Ga0211736_108541371 65Ga0211734_105501706 66Ga0211734_107258681 67Ga0211734_1098687310 68Ga0211733_101577362 69Ga0211726_108973572 70Ga0211729_113961721 71Ga0208858_10101956 72Ga0207941_10100593 73Ga0207942_10058126 74Ga0222714_100154124 75Ga0222714_102591673 76Ga0222713_102666321 77Ga0222712_102660413 78Ga0181351_10123877 79Ga0228702_11107022 80Ga0244777_100318846 81Ga0244775_100514832 82Ga0244775_102524261 83Ga0244775_102776662 84Ga0244775_104420982 85Ga0244775_105524581 86Ga0244775_111927763 87Ga0244776_101165524 88Ga0244776_101919672 89Ga0208784_11330953 90Ga0255253_10787571 91Ga0255066_10466533 92Ga0255114_10293754 93Ga0255104_10344984 94Ga0255108_10499223 95Ga0255132_10688541 96Ga0208923_10101014 97Ga0255138_10343901 98Ga0255128_10466121 99Ga0255125_10481633 100Ga0255125_10847661 101Ga0208966_10338093 102Ga0255118_10753992 103Ga0255118_10857251 104Ga0208975_10484664 105Ga0209599_100178184 106Ga0209358_103095773 107Ga0209990_100971673 108Ga0315899_106295092 109Ga0315909_105801402 110Ga0315294_108957631 111Ga0315901_103953322 112Ga0315905_1003283311 113Ga0334992_0012399_4243_4443 114Ga0334994_0516880_333_533 115Ga0335019_0594482_3_194 116Ga0335063_0564226_2_226 117Ga0335068_0501816_3_176 118Ga0335033_0249228_3_215 119Ga0335013_0745258_3_182
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86 1ErSWdraft_4774790 2RCM33_10451952 3B570J29032_1098133093 4Ga0078894_112420261 5Ga0114354_11079464 6Ga0181343_11295172 7Ga0208923_10101014
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86 1ErSWdraft_4774790 2RCM33_10451952 3B570J29032_1098133093 4Ga0078894_112420261 5Ga0114354_11079464 6Ga0181343_11295172 7Ga0208923_10101014
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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 16.67% β-sheet: 34.85% Coil/Unstructured: 48.48%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Pfam ID	Name	% Frequency in 119 Family Scaffolds
PF01381	HTH_3	5.88
PF13518	HTH_28	4.20

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	14.29 %
Unclassified	root	N/A	85.71 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	3.36 %
Unclassified	root	N/A	85.71 %
Viruses	superkingdom	All Organisms → Viruses	10.92 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	3.36 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	10.92 %
Unclassified	root	N/A	85.71 %

Name	Rank	Taxonomy	Distribution
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	3.36 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	10.92 %
Unclassified	root	N/A	85.71 %

Name	Rank	Taxonomy	Distribution
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	3.36 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	10.92 %
Unclassified	root	N/A	85.71 %

Name	Rank	Taxonomy	Distribution
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	3.36 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	10.92 %
Unclassified	root	N/A	85.71 %

Name	Rank	Taxonomy	Distribution
Flavobacteriia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia	3.36 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	10.92 %
Unclassified	root	N/A	85.71 %

Name	Rank	Taxonomy	Distribution
Flavobacteriales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	3.36 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	10.92 %
Unclassified	root	N/A	85.71 %

Name	Rank	Taxonomy	Distribution
Crocinitomicaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae	3.36 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	10.92 %
Unclassified	root	N/A	85.71 %

Name	Rank	Taxonomy	Distribution
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	10.92 %
Unclassified	root	N/A	85.71 %
unclassified Crocinitomicaceae	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae	3.36 %

Name	Rank	Taxonomy	Distribution
Crocinitomicaceae bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium	3.36 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	10.92 %
Unclassified	root	N/A	85.71 %

Scaffold	Taxonomy	Length	IMG/M Link
2035265000\|ErSWdraf_F5BXKTZ02GGZ8W	Not Available	523	Open in IMG/M
2199352004\|2199820923	Not Available	1426	Open in IMG/M
2199352004\|2199907866	All Organisms → Viruses → Predicted Viral	2914	Open in IMG/M
3300000268\|M3P_10032986	All Organisms → Viruses → Predicted Viral	1806	Open in IMG/M
3300001838\|RCM33_1045195	Not Available	736	Open in IMG/M
3300001851\|RCM31_10035780	Not Available	1746	Open in IMG/M
3300002363\|B570J29624_102355	Not Available	1298	Open in IMG/M
3300002408\|B570J29032_109734732	All Organisms → Viruses → Predicted Viral	1163	Open in IMG/M
3300002408\|B570J29032_109813309	Not Available	1433	Open in IMG/M
3300002835\|B570J40625_100026091	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium	9491	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	98.32%
Terrestrial	Environmental → Terrestrial	1.68%

Habitat	Taxonomy	Distribution
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	1.68%
Freshwater	Environmental → Aquatic → Freshwater	73.11%
Marine	Environmental → Aquatic → Marine	25.21%

Habitat	Taxonomy	Distribution
Coastal	Environmental → Aquatic → Marine → Coastal	3.36%
Creek	Environmental → Aquatic → Freshwater → Creek	0.84%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	9.24%
Lake	Environmental → Aquatic → Freshwater → Lake	21.85%
Lentic	Environmental → Aquatic → Freshwater → Lentic	34.45%
Lotic	Environmental → Aquatic → Freshwater → Lotic	2.52%
River	Environmental → Aquatic → Freshwater → River	10.08%
Unclassified	Environmental → Aquatic → Marine → Unclassified	12.61%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	3.36%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified	1.68%

Habitat	Taxonomy	Distribution
Epilimnion	Environmental → Aquatic → Freshwater → Lentic → Epilimnion	6.72%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	7.56%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	1.68%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	1.68%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	27.73%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	20.17%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	12.61%
Unclassified	Environmental → Aquatic → Freshwater → River → Unclassified	10.08%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	3.36%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	3.36%
Unclassified	Environmental → Aquatic → Freshwater → Lotic → Unclassified	2.52%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified	1.68%
Unclassified	Environmental → Aquatic → Freshwater → Creek → Unclassified	0.84%

Habitat	Taxonomy	Distribution
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	2.52%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface	1.68%
Estuarine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine	9.24%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	7.56%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	3.36%
Freshwater	Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater	10.08%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	7.56%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater	6.72%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	5.88%
Freshwater	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater	3.36%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater	2.52%
Freshwater	Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater	0.84%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	21.01%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	0.84%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment	0.84%
Freshwater Lentic	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic	4.20%
Freshwater To Marine Saline Gradient	Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient	0.84%
Freshwater, Plankton	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton	5.88%
Lotic	Environmental → Aquatic → Freshwater → Lotic → Unclassified → Lotic	0.84%
Marine Plankton	Environmental → Aquatic → Freshwater → Lotic → Unclassified → Marine Plankton	1.68%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	1.68%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	0.84%

Visualization
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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2035265000	Freshwater microbial communities from Swedish Lakes - surface of Lake Erken	Environmental	Open in IMG/M
2199352004	Freshwater microbial communities from Lake Mendota, WI - Practice 15JUN2010 epilimnion	Environmental	Open in IMG/M
3300000268	Lotic microbial communities from Mississippi River at two locations in the state of Minnesota, sample from River Site 1, Mississippi Headwaters ver2	Environmental	Open in IMG/M
3300001838	Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM33, ROCA_DNA217_0.2um_bLM_C_2a	Environmental	Open in IMG/M
3300001851	Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM31, ROCA_DNA206_0.2um_MCP-S_C_3b	Environmental	Open in IMG/M
3300002363	Freshwater microbial communities from Lake Mendota, WI - 24AUG2012 deep hole epilimnion	Environmental	Open in IMG/M
3300002408	Freshwater microbial communities from Lake Mendota, WI, sample - 15JUL2010 deep hole epilimnion (Lake Mendota Combined assembly, ASSEMBLY_DATE=20140123)	Environmental	Open in IMG/M
3300002835	Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)	Environmental	Open in IMG/M
3300003277	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD	Environmental	Open in IMG/M
3300003388	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.SN	Environmental	Open in IMG/M

Showing 1 to 10 of 91 entries

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
ErSWdraft_4774790	2035265000	Freshwater	MAYTIAMNTTDKVIVKFRFRTPRMVYSVYFNGMLLTSGYDAQQLGEDYSRKYGVEWLLQDGDKFYHRKVS
2199996623	2199352004	Freshwater	MNTTDKVIVKFRFRTPRMVYSVYFNGMLLTSGYDAQQLGEDYARKYGVEWLLQDGDKFYSQKGLVK
2200088927	2199352004	Freshwater	MNTTDKVIVKFRFRTPRMVYSVYFNGMLLTSGYDAQQLGEEYAHKYGVEWLLQDGDKFYSQKGLVK
M3P_100329861	3300000268	Lotic	TIAMNTTDKVIVKFRFRTPRMVYSVYFNGMLLTSGYDAQQLGEDYAKKYGVEWLLQDGDKFYSQKGLVK*
RCM33_10451952	3300001838	Marine Plankton	MSYTIAMNTTDKVIVKFRSRSPRLLFSAYYNGILLASGSNAQELGEDYARKYGTEWVLQHGNKFYTQGGVK*
RCM31_100357804	3300001851	Marine Plankton	MSYTIAMNTTDKVIVKFRSRSPRLLFSAYYNGILFASGSNAQELGEDYARKYGTEWVLQHGNKFYTQGGVK*
B570J29624_1023552	3300002363	Freshwater	MAYTIAMNTTDKVIVKFRXRTPRMVYSVYFNGMLLTSGYDAQQLGEDYAKKYGVEWLLQDGDKFYSQKGLVK*
B570J29032_1097347324	3300002408	Freshwater	MAYTIAMNTTDKVIVKFRFRTPRMVYSVYFNGMLLTSGYDAQQLGEDYAKKYGVEWLLQDGDKFY
B570J29032_1098133093	3300002408	Freshwater	MNTTGKVIVKFRFRTPRMVYSVYFNCKYLASGYDAQQLGEYYARKYGAEWLLQDGDKFYSQKGLVK*
B570J40625_10002609116	3300002835	Freshwater	MAYTIAMNTTDKVIVKFRFRTPRMVYSVYFNGMLLTSGYDAQQLGEDYAKKYGVEWLLQDGDKFYSQKGLVK*
B570J40625_1000449545	3300002835	Freshwater	MNTTDKVIVKFRFRTPRMVYSVYFNGMLLTSGYDAQQLGEEYAHKYGVEWLLQDGDKFYSQKGLVK*
JGI25908J49247_100324793	3300003277	Freshwater Lake	MNTTDKVIVKFRFRTPRMVYSVYFNGMLLTSGYDAQQLGEDYARKYGAEWLLQDGDKFYSQKGLVK
JGI25910J50241_100302924	3300003388	Freshwater Lake	MNTTDKVIVKFRFRTPRMVYSVYFNGMLLTSGYDAQQLGEDYARKYGAEWLLQDGDKFYSQKGLVK*
JGI25911J50253_100208153	3300003411	Freshwater Lake	MNTTXKVIVKFXFRTPRMVYSVYFNGMLLASGYDAQQLGEDYARKYGAEWLLQDGDKFYSQKGLVK*
JGI25928J51866_10843841	3300003616	Freshwater Lake	NTTDKVIVKFRFRTPRMVYSVYFNGMLLTSGYDAQQLGEDYARKYGAEWLLQDGDKFYSQKGLVK*
Ga0065166_101559781	3300004112	Freshwater Lake	MLCFMPYTIAMNTTDIVIVKFRSRSPRMLFSAYYNGILLASGSNAQDLGEDYARKYGTDWVLQDGNKFYTQGGVK*
Ga0066180_100638073	3300004128	Freshwater Lake	MNTTDKVIVKFRFRTPRMVYSVYFNGMLLTSGYDAQQLGEDYARKYGAEWLLQDGDKFYSQKG
Ga0007787_106410891	3300004240	Freshwater Lake	MHHMSYTIAMNTTDKVIVKFRSRSPRMLYSAYYNGVLLASSSNAQELGEDYARKYGTEWVLQDGNKFYTQGGVK
Ga0070374_102579431	3300005517	Freshwater Lake	MNTTDKVIVKFRFRTPRMVYSVYFNGMLLTSGYDAQQLGEDYAKKYGVEWLLQDGDKFYSQKGLVK*
Ga0068876_102421052	3300005527	Freshwater Lake	MSYTIAMNTTDIVIVKFRSRSPRMLYSAYYNGVLLASGSNAQDLGEDYARKYGTEWVLQDGNKFYTQGGVK*
Ga0068876_103977372	3300005527	Freshwater Lake	MAYTIAMNTTDKVIVKFRFRTPHMVYSVYFNGMLLASGYDAQQLGEDYARKYGVEWLLQDGDKFYSQKGLVK*
Ga0068872_105220773	3300005528	Freshwater Lake	MPYYIAMNTTDKVIVKFRSRSPRLLFSAYYNGVLLASGSNAQDLGEDYARKYGTEWVLQDGNKYYTQGGVK*
Ga0049083_1000121921	3300005580	Freshwater Lentic	MNTTDKVIVKFRFRTPRMVYSVYFNGMLLASGYDAQQLGEDYARKYGAEWLLQDGDKFYSQKGLVK*
Ga0049081_101339833	3300005581	Freshwater Lentic	MAYTIAMNTTDKVIVKFRSRSPRLLFSAYYNGTLLASSSNAQDLGEEYARKYGTEWVLQDGSKFYTQGGVK*
Ga0049080_101275242	3300005582	Freshwater Lentic	MAYTIAMNTTDKVIVKFRFRTPRMVYSVYFNGMLLASGYDAQQLGEDYARKYGAEWLLQDGDKFYSQKGLVK*
Ga0078894_1001827213	3300005662	Freshwater Lake	MSYTIAMNTTDIVIVKFRFRTPRMVYSVYFNGMLLASGYDAQQLGEDYARKYGTEWVLQDGNKFYTQGGVK*
Ga0078894_1003259713	3300005662	Freshwater Lake	MNTTDKVIVKFRFRTPRMVYSVYFNGMLLASGYDAQQLGEDYARKYGVEWLLQDGDKFYSQKGLVK*
Ga0078894_102003693	3300005662	Freshwater Lake	MNTTDKVIVKFRFRTPRMVYSVYFNGMLLTSGYDAQQLGEDYARKYGVEWLLQDGDKFYSQKGLVK*
Ga0078894_107105222	3300005662	Freshwater Lake	MNTTDKVIVKFRFRTPHMVYSVYFNGMLLASGYDAQQLGEDYARKYGAEWLLQDGDKFYSQKGLVK*
Ga0078894_108089763	3300005662	Freshwater Lake	MSYTIAMNTTDKVIVKFRSRSPRMLYSAYYNGVLLASSSNAQELGEDYARKYGTEWVLQDGNKFYTQGGVK*
Ga0078894_112420261	3300005662	Freshwater Lake	MKFYYINICCKAVPRYTIAMNTTDKVIVKFRFRTPRMVYSVYFNGMLLASGYDAQQLGEDYARKYGAEWLLQDGDKFYSQKGLVK
Ga0078894_117239582	3300005662	Freshwater Lake	MPYYIAMNTTDKVIVKFRSRSPRLLFSAYYNGVLLASSSNAQDLGEDYARKYDTEWILQDGNKYYTQGGVK*
Ga0070744_100119051	3300006484	Estuarine	IVKFRFRTPRMVYSVYFNGMLLTSGYDAQQLGEEYARKYGVEWLLQDGDKFYSQKGLVK*
Ga0070744_100660842	3300006484	Estuarine	MNTTDKVIVKFRFRTPHMVYSVYFNGMLLASGYDAQQLGEDYARKYGVEWLLQDGDKFYSQKGLVK*
Ga0070744_101550061	3300006484	Estuarine	IVKFRFRTPRMVYSVYFNGMLLASGYDAQQLGEDYARKYGAEWLLQDGDKFYSQKGLVK*
Ga0070744_101934812	3300006484	Estuarine	MNTTDKVIVKFRFRTPRMVYSVYFNGVLLASGYDAQQLGEDYARKYGAEWLLQDGDKFYSQKGLVK*
Ga0070744_102491781	3300006484	Estuarine	MKFYYINICCKAVPRYTIAMNTTDKIIVKFRFRNPRMVYSVYFNGMLLTSGYDAQQLGEEYAHKYGAEWLLQDGDKFYSQKGLVK
Ga0075473_101024593	3300006875	Aqueous	MNTTDKVIVKFRFRTPRMVYSVYFNGMLLTSGYDAQQLGEDYSRKYGVEWLLQDGDKFYSQKGLVK*
Ga0075472_105708453	3300006917	Aqueous	IAMNTTDKVIVKFRFRTPRMVYSVYFNGMLLTSGYDAQQLGEDYSRKYGVEWLLQDGDKFYSQKGLVK*
Ga0102828_10210531	3300007559	Estuarine	KVIVKFRFRTPRMVYSVYFNGMYLASGYDAQQLGEYYARKYGREWLLQDGDKFYSQKGLVK*
Ga0102856_10787742	3300007636	Estuarine	MAYTIAMNTTDKVIVKFRFRTPRMVYSVYFNGVLLTSGYDAQQLGEEYAKKYGVEWLLQDGDKFYSQKGLVK*
Ga0114340_10757992	3300008107	Freshwater, Plankton	MAYTIAMNTTDKVIVKFRFRTPRMVYSVYFNGMLLASGYDAQQLGEDYARKYGVEWLLQDGDKFYSQKGLVK*
Ga0114340_10983222	3300008107	Freshwater, Plankton	MNTTDKVIVKFRSRSPRLLFSAYYNGVLLASGSNAQDLGEDYARKYDTEWILQDGNKYYTQGGVK*
Ga0114341_101337445	3300008108	Freshwater, Plankton	MSYTIAMNTTDIVIVKFRSRSPRLLFSAYYNGVLLASGSNAQDLGEDYARKYGTEWILQDGNKYYTQGGVK*
Ga0114343_11946402	3300008110	Freshwater, Plankton	MSYTIAMNTTDIVIVKFRSRSPRLLFSAYYNGVLLASGSNAQDLGEDYARKYGTEWILQDGNKFYTQGGVK*
Ga0114354_11079464	3300008119	Freshwater, Plankton	IVKFRSRSPRLLFSAYYNGVLLASSSNAQDLGEDYARKYDTEWILQDGNKYYTQGGVK*
Ga0114840_10033419	3300008258	Freshwater, Plankton	IVKFRSRSPRLLFSAYYNGVLLASGSNAQDLGEDYARKYGTEWVLQDGNKFYTQGGVK*
Ga0114364_11285903	3300008267	Freshwater, Plankton	MPYYIAMNTTDKVIVKFRSRSPRLLFSAYYNGVLLASGSNAQDLGEDYARKYDTEWILQDGNKYYTQGGVK*
Ga0114876_11103705	3300008448	Freshwater Lake	IVKFRSRSPRLLFSAYYNGVLLASGSNAQDLGEDYARKYGTEWILQDGNKYYTQGGVK*
Ga0102829_12539592	3300009026	Estuarine	DKVIVKFRFRTPRMVYSVYFNGMLLTSGYDAQQLGEDYARKYGVEWLLQDGDKFYSQKGLVK*
Ga0102854_11623311	3300009058	Estuarine	TDKVIVKFRFRNPRMVYSVYFNGMLLTSGYDAQQMGEDYAKKYGVEWLLQDGDKFYSKKGLVK*
Ga0102830_12193501	3300009059	Estuarine	MSYTIAMNTTDIVIVKFRSRSPRLLFSAYYNGVLLASGSNAQDLGEDYARKYGTEWVLQDGNKFYTQGGVK*
Ga0114982_10551862	3300009419	Deep Subsurface	MNTTDKVIVKFRSRSPRLLFSAFYNGTLLASGSNAQELGEDYARKYGVEWLLQDGDKFYSQKGLVK*
Ga0129336_105139761	3300010370	Freshwater To Marine Saline Gradient	MSYTIALNTTDIVIVKFRSRSPRMLYSAYYNGVLLASGNNAQELGEDYARKYGTEWVLQDGNKFYTQGGVK*
Ga0164293_103795123	3300013004	Freshwater	MAYTIAMNTTDKVIVKFRFRTPRMVYSVYFNGMLLTSGYDAQQLGEDYAKKYGVEWLLQDGDKFYS
Ga0164295_102104122	3300013014	Freshwater	MAYTIAMNTTDKVIVKFRSRSPRLLFSAYYNGTLLASSSNAQDLGEDYARKYGTEWVLQDGSKFYTQGGVK*
Ga0181343_10660263	3300017766	Freshwater Lake	MSYTIAMNTTDIVIVKFRSRSPRLLFSAYYNGVLLASGSNAQDLGEDYARKYDTEWILQDGNKYYTQGGVK
Ga0181343_10833944	3300017766	Freshwater Lake	FRSRSPRLLFSAYYNGVLLASGSNAQELGEDYARKYGVEWLLQDGDKFYSQKGLVK
Ga0181343_11295172	3300017766	Freshwater Lake	FRTPRMVYSVYFNGMLLTSGYDAQQLGEDYAKKYGVEWLLQDGDKFYSQKGLVK
Ga0181346_13065121	3300017780	Freshwater Lake	TTDKVIVKFRFRTPRMVYSVYFNGMLLASGYDAQQLGEDYARKYGAEWLLQDGDKFYSQKGLVK
Ga0181607_102508854	3300017950	Salt Marsh	YTIAMNTTDIVIVKFRSRSPRMLYSAYYNGILLASGSNAQELGEDYARKYGTEWVLQDGNKFYTQGGVK
Ga0181600_106158772	3300018036	Salt Marsh	MSYTIAMNTTDIVIVKFRSRSPRMLYSAYYNGILLASGSNAQELGEDYARKYGTEWVLQDGNKFYTQGGVK
Ga0207193_13115111	3300020048	Freshwater Lake Sediment	MAYTIAMNTTDKVIVKFRFRTPRMVYSVYFNGVLLTSGYDAQQLGEEYAKKYGVEWLLQDGDKFYSQKGLVK
Ga0211736_108541371	3300020151	Freshwater	VIVKFRFRTPRMVYSVYFNGMLLTSGYDAQQLGEDYSRKYGVEWLLQDGDKFYSQKGLVK
Ga0211734_105501706	3300020159	Freshwater	MSYTIAMNTTDIVIVKFRFRTPRMVYSVYFNGMLLASGYDAQQLGEDYARKYGVEWLLQDGDKFYSQKGLVK
Ga0211734_107258681	3300020159	Freshwater	MAYTIAMNTTDKVIVKFRFRTPRMVYSVYFNGMLLTSGYDAQQLGEDYSRKYGVEWLLQDGDKFYSQKGLVK
Ga0211734_1098687310	3300020159	Freshwater	MNTTDKVIVKFRFRTPRMVYSVYFNGMLLTSGYDAQQLGEEYARKYGVEWLLQDGDKFYSQKGIVK
Ga0211733_101577362	3300020160	Freshwater	MNTTDKVIVKFRFRTPRMVYSVYFNGMLLTSGYDAQQLGEEYARKYGVEWLLQDGDKFYSQKGLVK
Ga0211726_108973572	3300020161	Freshwater	MAYTIAMNTTDKVIVKFRFRTPRMVYSVYFNGMLLTSGYDAQQLGEEYARKYGVEWLLQDGDKFYSQKGLVK
Ga0211729_113961721	3300020172	Freshwater	KVIVKFRFRTPRMVYSVYFNGMLLASGYDAQQLGEEYARKYGVEWLLQDGDKFYSQKGLV
Ga0208858_10101956	3300020524	Freshwater	MAYTIAMNTTDKVIVKFRSRTPRMVYSVYFNGMLLTSGYDAQQLGEDYAKKYGVEWLLQDGDKFYSQKGLVK
Ga0207941_10100593	3300020539	Freshwater	MAYTIAMNTTDKVIVKFRFRTPRMVYSVYFNGMLLTSGYDAQQLGEDYAKKYGVEWLLQDGDKFYSQKGLVK
Ga0207942_10058126	3300020549	Freshwater	MNTTDKVIVKFRFRTPRMVYSVYFNGMLLTSGYDAQQLGEDYAKKYGVEWLLQDGDKFYSQKGLVK
Ga0222714_100154124	3300021961	Estuarine Water	MPYYIAMNTTDKVIVKFRSRSPRLLFSAYYNGILLASGNNAQDLGEDYARKYGTEWILQDGNKFYTQGGVK
Ga0222714_102591673	3300021961	Estuarine Water	MSYTIAMNTTDIVIVKFRSRSPRMLYSAYYNGVLLASGSNAQDLGEDYARKYGTEWVLQDGNKFYTQGGVK
Ga0222713_102666321	3300021962	Estuarine Water	MPYYIAMNTTDKVIVKFRSRSPRLLFSAYYNGVLLASSSNAQDLGEDYARKYGTEWILQDGNKFYTQGGVK
Ga0222712_102660413	3300021963	Estuarine Water	MAYTIAMNTTDKIIVKFRSRTPRMVYSVYFNGMLLTSGYDAQQLGEDYAKKYGVEWLLQDGDKFYSQKGLVK
Ga0181351_10123877	3300022407	Freshwater Lake	MNTTDKVIVKFRFRTPRMVYSVYFNGMLLASGYDAQQLGEDYARKYGAEWLLQDGDKFYSQKGLVK
Ga0228702_11107022	3300022748	Freshwater	MLCFMPYTIAMNTTDIVIVKFRSRSPRMLYSAYYNGILLASGSNAQELGEDYARKYGTEWVLQDGNKFYTQGGVK
Ga0244777_100318846	3300024343	Estuarine	MAYTIAMNTTDKVIVKFRFRNPRMVYSVYFNGMLLTSGYDAQQLGEDYAKKYGVEWLLQDGDKFYSQKGLVK
Ga0244775_100514832	3300024346	Estuarine	MNTTDKVIVKFRFRTPRMVYSVYFNGVLLASGYDAQQLGEDYARKYGAEWLLQDGDKFYSQKGLVK
Ga0244775_102524261	3300024346	Estuarine	MNTTDKIIVKFRFRNPRMVYSVYFNGMLLTSGYDAQQLGEEYAHKYGAEWLLQDGDKFYSQKGLVK
Ga0244775_102776662	3300024346	Estuarine	MAYTIAMNTTDKVIVKFRFRTPRMVYSVYFNGMLLASGYDAQQLGEDYARKYGAEWLLQDGDKFYSQKGLVK
Ga0244775_104420982	3300024346	Estuarine	MNTTDKVIVKFRFRTPHMVYSVYFNGMLLASGYDAQQLGEDYARKYGVEWLLQDGDKFYSQKGLVK
Ga0244775_105524581	3300024346	Estuarine	MNTTDKVIVKFRSRSPRLLFSAYYNGVLLASGSNAQELGEDYARKYGVEWLLQDGEKFYSQKGLVK
Ga0244775_111927763	3300024346	Estuarine	MAYTIAMNTTDIVIVKFRRRSPRLLFSAYYNGMLLASGGNMLELGERFARKYGKEWLLQDGDKFYSQKGLVK
Ga0244776_101165524	3300024348	Estuarine	MNTTDKVIVKFRFRTPRMVYSVYFNGMLLTSGYDAQQLGEDYAKKYGVEWLLQDGDKFYSKKGLVK
Ga0244776_101919672	3300024348	Estuarine	MKFYYINICCKAVPRXYTIAMNTTDKIIVKFRFRNPRMVYSVYFNGMLLTSGYDAQQLGEEYAHKYGAEWLLQDGDKFYSQKGLVK
Ga0208784_11330953	3300025732	Aqueous	MNTTDKVIVKFRFRTPRMVYSVYFNGMLLTSGYDAQQLGEDYSRKYGVEWLLQDGDKFYSQKGLVK
Ga0255253_10787571	3300026429	Freshwater	VIVKFRFRTPRMVYSVYFNGMLLASGYDAQQLGEDYARKYGAEWLLQYGDKFYSQKGLVK
Ga0255066_10466533	3300027131	Freshwater	MNTTDKVIVKFRFRTPRMVYSVYFNGMLLASGYDAQQLGEDYARKYGAEWLLQYGDKFYSQKGLVK
Ga0255114_10293754	3300027145	Freshwater	MNTTDKVIVKFRFRTPRMVYSVYFNGMLLASGYDAQQLGEEYARKYGAEWLLQDGDKFYSQKGLVK
Ga0255104_10344984	3300027146	Freshwater	YTIAMNTTDKVIVKFRFRTPRMVYSVYFNGMLLTSGYDAQQLGEDYARKYGVEWLLQDGDKFYSQKGLVK
Ga0255108_10499223	3300027149	Freshwater	TDKVIVKFRFRTPRMVYSVYFNGMLLASGYDAQQLGEDYARKYGAEWLLQYGDKFYSQKGLVK
Ga0255132_10688541	3300027293	Freshwater	VYTGXYTIAMNTTDKVIVKFRFRTPRMVYSVYFNGMLLTSGYDAQQLGEDYARKYGVEWLLQDGDKFYSQKGLVK
Ga0208923_10101014	3300027320	Estuarine	MNTKDIVIVKFRRRSPRMLFSAYYNGMLLASGGNMLELGEGYARKYGTEWLLQDGKKFYSREGLVK
Ga0255138_10343901	3300027333	Freshwater	AYTIAMNTTDKVIVKFRSRTPRMVYSVYFNGMLLTSGYDAQQLGEDYAKKYGVEWLLQDGDKFYSQKGLVK
Ga0255128_10466121	3300027336	Freshwater	TDKVIVKFRFRTPRMVYSVYFNGMLLASGYDAQQLGEDYARKYGAEWLLQDGDKFYSQKGLVK
Ga0255125_10481633	3300027534	Freshwater	TIAMNTTDKVIVKFRFRTPRMVYSVYFNGMLLASGYDAQQLGEDYARKYGAEWLLQDGDKFYSQKGLVK
Ga0255125_10847661	3300027534	Freshwater	YTIAMNTTDKVIVKFRFRTPRMVYSVYFNGMLLASGYDAQQLGEEYARKYGAEWLLQDGDKFYSQKGLVK
Ga0208966_10338093	3300027586	Freshwater Lentic	MNTTDKVIVKFRFRTPRMVYSVYFNGMLLTSGYDAQQLGEGYARKYGTEWLLQDGKKFYSREGLVK
Ga0255118_10753992	3300027593	Freshwater	GXYTIAMNTTDKVIVKFRFRTPRMVYSVYFNGMLLASGYDAQQLGEDYARKYGAEWLLQDGDKFYSQKGLVK
Ga0255118_10857251	3300027593	Freshwater	VYTRXYTIAMNTTDKVIVKFRFRNPRMVYSVYFNGMLLTSGYDAQQLGEDYAKKYGVEWLLQDGDKFYSQKGLVK
Ga0208975_10484664	3300027659	Freshwater Lentic	MAYTIAMNTTDKVIVKFRSRSPRLLFSAYYNGTLLASSSNAQDLGEEYARKYGTEWVLQDGSKFYTQGGVK
Ga0209599_100178184	3300027710	Deep Subsurface	MNTTDKVIVKFRFRTPRMVYSVYFNGMLLASGYDAQQLGEDYARKYGVEWLLQDGDKFYSQKGLVK
Ga0209358_103095773	3300027804	Freshwater Lake	MPYYIAMNTTDKVIVKFRSRSPRLLFSAYYNGVLLASGSNAQDLGEDYARKYGTEWILQDGNKYYTQGGVK
Ga0209990_100971673	3300027816	Freshwater Lake	MPYYIAMNTTDKVIVKFRSRSPRLLFSAYYNGVLLASGSNAQDLGEDYARKYDTEWILQDGNKYYTQGGVK
Ga0315899_106295092	3300031784	Freshwater	MSYTIAMNTTDIIIVKFRSRSPRLLFSAYYNGVLLASGSNAQDLGEDYARKYGTEWILQDGNKYYTQGGVK
Ga0315909_105801402	3300031857	Freshwater	MSYTIAMNTTDIVIVKFRSRSPRLLFSAYYNGVLLASSSNAQDLGEDYARKYGTEWVLQDGNKFYTQGGVK
Ga0315294_108957631	3300031952	Sediment	MNTKDIEIVKFRRRSPRMLFSAYYNGMLLASGGNMLELGEGYARKYGTEWLLQDGKKFYSREGLVK
Ga0315901_103953322	3300031963	Freshwater	MNTTDKVIVKFRSRSPRLLFSAYYNGVLLASGSNAQDLGEDYARKYGTEWILQDGNKYYTQGGVK
Ga0315905_1003283311	3300032092	Freshwater	MSYTIAMNTTDIVIVKFRSRSPRLLFSAYYNGVLLASGSNAQDLGEDYARKYGTEWVLQDGNKFYTQGGVK
Ga0334992_0012399_4243_4443	3300033992	Freshwater	MNTTDKVIVKFRFRNPRMVYSVYFNGMLLTSGYDAQQLGEDYARKYGVEWLLQDGDKFYSQKGLVK
Ga0334994_0516880_333_533	3300033993	Freshwater	MNTTGKVIVKFRFRTPRMVYSVYFNCKYLASGYDAQQLGEYYARKYGAEWLLQDGDKFYSQKGLVK
Ga0335019_0594482_3_194	3300034066	Freshwater	TDKVIVKFRFRTPRMVYSVYFNGMLLTSGYDAQQLGEDYAKKYGVEWLLQDGDKFYSQKGLVK
Ga0335063_0564226_2_226	3300034111	Freshwater	YYRWYTIAMNTTDKVIVKFRFRTPRMVYSVYFNGMLLTSGYDAQQLGEEYAHKYGVEWLLQDGDKFYSQKGLVK
Ga0335068_0501816_3_176	3300034116	Freshwater	KFRFRTPRMVYSVYFNGMLLASGYDAQQLGEDYAHKYGVEWFLQDGDKFYSQKGLVK
Ga0335033_0249228_3_215	3300034117	Freshwater	MAYTIAMNTTDKVIVKFRFRTPRMVYSVYFNGMLLTSGYDAQQLGEDYAKKYGVEWLLQDGDKFYSQKGLV
Ga0335013_0745258_3_182	3300034284	Freshwater	IVKFRSRSPRLLFSAYYNGVLLASGSNAQELGEDYARKYGVEWLLQDCDKFYSQKGLVK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F074878

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences