NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F074851

Metagenome / Metatranscriptome Family F074851

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F074851
Family Type Metagenome / Metatranscriptome
Number of Sequences 119
Average Sequence Length 50 residues
Representative Sequence TAQPCPPALDPGVDFFGAPVQVCSGGSGNNNFYGKGLVNALAASH
Number of Associated Samples 105
Number of Associated Scaffolds 119

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 0.00 %
% of genes from short scaffolds (< 2000 bps) 0.00 %
Associated GOLD sequencing projects 101
AlphaFold2 3D model prediction Yes
3D model pTM-score0.45

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (100.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil
(15.126 % of family members)
Environment Ontology (ENVO) Unclassified
(39.496 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(49.580 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Fibrous Signal Peptide: No Secondary Structure distribution: α-helix: 12.33%    β-sheet: 9.59%    Coil/Unstructured: 78.08%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.45
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 119 Family Scaffolds
PF00923TAL_FSA 21.85
PF01177Asp_Glu_race 11.76
PF00144Beta-lactamase 4.20
PF01904DUF72 4.20
PF00535Glycos_transf_2 4.20
PF12811BaxI_1 2.52
PF02576RimP_N 2.52
PF03481Sua5_C 1.68
PF00753Lactamase_B 1.68
PF02577BFN_dom 1.68
PF12706Lactamase_B_2 0.84
PF14748P5CR_dimer 0.84
PF00082Peptidase_S8 0.84
PF00679EFG_C 0.84
PF08529NusA_N 0.84
PF01548DEDD_Tnp_IS110 0.84
PF12697Abhydrolase_6 0.84
PF03682UPF0158 0.84
PF02773S-AdoMet_synt_C 0.84
PF05962HutD 0.84
PF03734YkuD 0.84
PF00211Guanylate_cyc 0.84
PF028262-Hacid_dh_C 0.84
PF03018Dirigent 0.84
PF09722Xre_MbcA_ParS_C 0.84
PF04226Transgly_assoc 0.84
PF02080TrkA_C 0.84
PF04075F420H2_quin_red 0.84
PF00583Acetyltransf_1 0.84
PF01979Amidohydro_1 0.84
PF00496SBP_bac_5 0.84
PF00106adh_short 0.84

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 119 Family Scaffolds
COG0176Transaldolase/fructose-6-phosphate aldolaseCarbohydrate transport and metabolism [G] 21.85
COG1680CubicO group peptidase, beta-lactamase class C familyDefense mechanisms [V] 4.20
COG1686D-alanyl-D-alanine carboxypeptidaseCell wall/membrane/envelope biogenesis [M] 4.20
COG1801Sugar isomerase-related protein YecE, UPF0759/DUF72 familyGeneral function prediction only [R] 4.20
COG2367Beta-lactamase class ADefense mechanisms [V] 4.20
COG0779Ribosome maturation factor RimPTranslation, ribosomal structure and biogenesis [J] 2.52
COG1259Bifunctional DNase/RNaseGeneral function prediction only [R] 1.68
COG0192S-adenosylmethionine synthetaseCoenzyme transport and metabolism [H] 0.84
COG1376Lipoprotein-anchoring transpeptidase ErfK/SrfKCell wall/membrane/envelope biogenesis [M] 0.84
COG2114Adenylate cyclase, class 3Signal transduction mechanisms [T] 0.84
COG2261Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein familyGeneral function prediction only [R] 0.84
COG3034Murein L,D-transpeptidase YafKCell wall/membrane/envelope biogenesis [M] 0.84
COG3547TransposaseMobilome: prophages, transposons [X] 0.84
COG3758Various environmental stresses-induced protein Ves (function unknown)Function unknown [S] 0.84


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Phylogeny

NCBI Taxonomy

NameRankTaxonomyDistribution
UnclassifiedrootN/A100.00 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil15.13%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil5.04%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere5.04%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil4.20%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere4.20%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil3.36%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil3.36%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere3.36%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere3.36%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere3.36%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere3.36%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere3.36%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil2.52%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil2.52%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil2.52%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere2.52%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere2.52%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil1.68%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil1.68%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere1.68%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere1.68%
Avena Fatua RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere1.68%
Switchgrass RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere1.68%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere1.68%
SedimentEnvironmental → Aquatic → Freshwater → Lake → Sediment → Sediment0.84%
Wetland SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Wetland Sediment0.84%
Natural And Restored WetlandsEnvironmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands0.84%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment0.84%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil0.84%
Serpentine SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil0.84%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil0.84%
Grass SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil0.84%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil0.84%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil0.84%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil0.84%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil0.84%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil0.84%
Natural And Restored WetlandsEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands0.84%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland0.84%
SoilEnvironmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil0.84%
Tabebuia Heterophylla RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere0.84%
Arabidopsis Thaliana RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere0.84%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere0.84%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere0.84%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere0.84%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere0.84%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
2067725000Soil microbial communities from Great Prairies - Wisconsin Restored Prairie soilEnvironmentalOpen in IMG/M
2170459022Grass soil microbial communities from Rothamsted Park, UK - FA2 (control condition)EnvironmentalOpen in IMG/M
3300002562Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cmEnvironmentalOpen in IMG/M
3300004058Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqB_D1EnvironmentalOpen in IMG/M
3300004463Combined assembly of Arabidopsis thaliana microbial communitiesHost-AssociatedOpen in IMG/M
3300004480Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4EnvironmentalOpen in IMG/M
3300005329Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaGEnvironmentalOpen in IMG/M
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005335Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaGHost-AssociatedOpen in IMG/M
3300005440Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaGEnvironmentalOpen in IMG/M
3300005444Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaGEnvironmentalOpen in IMG/M
3300005526Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1EnvironmentalOpen in IMG/M
3300005543Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaGHost-AssociatedOpen in IMG/M
3300005544Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaGEnvironmentalOpen in IMG/M
3300005549Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaGEnvironmentalOpen in IMG/M
3300005578Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2Host-AssociatedOpen in IMG/M
3300005616Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2Host-AssociatedOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300005834Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2Host-AssociatedOpen in IMG/M
3300005842Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2Host-AssociatedOpen in IMG/M
3300005844Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2Host-AssociatedOpen in IMG/M
3300005985Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2Host-AssociatedOpen in IMG/M
3300006574Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAA (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300006577Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHPA (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300006604Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLMB (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300006755Agricultural soil microbial communities from Georgia to study Nitrogen management - GA PlitterEnvironmentalOpen in IMG/M
3300006797Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108EnvironmentalOpen in IMG/M
3300006845Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5Host-AssociatedOpen in IMG/M
3300006904Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3Host-AssociatedOpen in IMG/M
3300006953Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMB (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300007076Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4Host-AssociatedOpen in IMG/M
3300009012Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159EnvironmentalOpen in IMG/M
3300009090Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaGEnvironmentalOpen in IMG/M
3300009137Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158EnvironmentalOpen in IMG/M
3300009147Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)Host-AssociatedOpen in IMG/M
3300009176Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaGHost-AssociatedOpen in IMG/M
3300009177Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaGHost-AssociatedOpen in IMG/M
3300009553Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaGHost-AssociatedOpen in IMG/M
3300010039Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56EnvironmentalOpen in IMG/M
3300010301Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09082015EnvironmentalOpen in IMG/M
3300010362Tropical forest soil microbial communities from Panama - MetaG Plot_22EnvironmentalOpen in IMG/M
3300010375Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaGHost-AssociatedOpen in IMG/M
3300010397Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4EnvironmentalOpen in IMG/M
3300010400Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2EnvironmentalOpen in IMG/M
3300011000Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t6i015EnvironmentalOpen in IMG/M
3300012201Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaGEnvironmentalOpen in IMG/M
3300012211Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaGEnvironmentalOpen in IMG/M
3300012212Combined assembly of Hopland grassland soilHost-AssociatedOpen in IMG/M
3300012349Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaGEnvironmentalOpen in IMG/M
3300012532Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaGEnvironmentalOpen in IMG/M
3300012900Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S179-409R-1EnvironmentalOpen in IMG/M
3300012913Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S043-104R-2EnvironmentalOpen in IMG/M
3300012951Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MGEnvironmentalOpen in IMG/M
3300012961Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MGEnvironmentalOpen in IMG/M
3300012986Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MGEnvironmentalOpen in IMG/M
3300012988Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MGEnvironmentalOpen in IMG/M
3300013297Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaGHost-AssociatedOpen in IMG/M
3300013308Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaGHost-AssociatedOpen in IMG/M
3300014299Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleC_D1EnvironmentalOpen in IMG/M
3300014325Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaGHost-AssociatedOpen in IMG/M
3300014969Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaGHost-AssociatedOpen in IMG/M
3300015372Soil combined assemblyHost-AssociatedOpen in IMG/M
3300015373Combined assembly of cpr5 rhizosphereHost-AssociatedOpen in IMG/M
3300015374Col-0 rhizosphere combined assemblyHost-AssociatedOpen in IMG/M
3300016387Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176EnvironmentalOpen in IMG/M
3300018028Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coexEnvironmentalOpen in IMG/M
3300018032Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_BV01_MP10_20_MGEnvironmentalOpen in IMG/M
3300020000Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3a1EnvironmentalOpen in IMG/M
3300023069Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S049-202B-5EnvironmentalOpen in IMG/M
3300025885Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025911Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025927Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025931Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025934Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025936Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025941Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025942Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025945Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025972Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026035Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026078Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026118Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026142Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026536Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147 (SPAdes)EnvironmentalOpen in IMG/M
3300027843Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare3Fresh (SPAdes)EnvironmentalOpen in IMG/M
3300028379Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300028592Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Cellulose_Day30EnvironmentalOpen in IMG/M
3300028715Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_203EnvironmentalOpen in IMG/M
3300028716Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_198EnvironmentalOpen in IMG/M
3300028718Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_194EnvironmentalOpen in IMG/M
3300028722Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_368EnvironmentalOpen in IMG/M
3300028791Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_144EnvironmentalOpen in IMG/M
3300028796Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_141EnvironmentalOpen in IMG/M
3300028807Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186EnvironmentalOpen in IMG/M
3300028819Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153EnvironmentalOpen in IMG/M
3300028885Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_185EnvironmentalOpen in IMG/M
3300031668Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23EnvironmentalOpen in IMG/M
3300031740Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05EnvironmentalOpen in IMG/M
3300031747Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22EnvironmentalOpen in IMG/M
3300031908Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1EnvironmentalOpen in IMG/M
3300031910Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)EnvironmentalOpen in IMG/M
3300031938Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1EnvironmentalOpen in IMG/M
3300031996Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2EnvironmentalOpen in IMG/M
3300032261Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)EnvironmentalOpen in IMG/M
3300032397Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_0EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
GPWRP_039203002067725000SoilVAALLRSTATGQGCPAALDPGVEFFGAPVQFCKGGVGSNNFYGKGLVNALAAASR
FA2_051355802170459022Grass SoilQGAVVAMLRNTASGMGCPAALDPGVVFFGAPVQVCSGGVGTNNFYGAGLVNALAAIS
JGI25382J37095_1007329123300002562Grasslands SoilATKLPCPATHDPGVEFFGVPLQICTGGTGSNSYYGAGLVNALAAARD*
Ga0055498_1001319113300004058Natural And Restored WetlandsACPTALDPGVEFFGAPEQFCSGDPGSNNFYGKGLINALLAGTS*
Ga0063356_10179281213300004463Arabidopsis Thaliana RhizosphereGSVAALVRRTATPLGCPAEPDPGGEIFGTPPQFCSGGSGSNNFYGKGLINALLAGSS*
Ga0062592_10070947823300004480SoilQTATPLPCPTALDPGVAFFGAPVQVCQGGSGHNNFYGKGLLNALAATNK*
Ga0070683_10196771423300005329Corn RhizosphereMLRSTATGQACPTELDPGVDFFDAPVQYCSGGVGSNNFYGKGLVNALAASQ*
Ga0070683_10242777013300005329Corn RhizosphereQPCPPALDPGVDFFGAPVQVCSGGSGNNNFYGKGLVNALAASH*
Ga0066388_10610805113300005332Tropical Forest SoilALDPGVVFFGAPVQVCSGDPDSNNFYGSGLVNALAAANR*
Ga0070666_1144827023300005335Switchgrass RhizosphereALIRAAHPKMSVGAVVALLRKTATAQGCPAELDPGVEAFGAPVQHCKGGVGSNNFYGKGLVDANTAARG*
Ga0070705_10020801713300005440Corn, Switchgrass And Miscanthus RhizosphereGCPSALDPGVVFFGAPVQFCSGGVGSNNFYGKGLVNALAAAG*
Ga0070694_10153568813300005444Corn, Switchgrass And Miscanthus RhizosphereLACPSALDPGVAFFGAPVQVCKGGTGSNNFYGKGLVNALAASR*
Ga0073909_1029339813300005526Surface SoilAQHPNMSVGAVVSVIRGTATAQGCPAALDPGVVFFGAPEQFCKGGAGSNNFYGKGLLNALAAASR*
Ga0070672_10029909613300005543Miscanthus RhizospherePALDPGVDFFGAPVQVCSGGSGNNNFYGKGLVNALAASH*
Ga0070686_10157566313300005544Switchgrass RhizospherePAALDPGVEFFGAPVQTCTGGSSRNSFYGHGLVNALAASH*
Ga0070704_10109659213300005549Corn, Switchgrass And Miscanthus RhizosphereVVALLRSTATGQACPTELDPGVAFFGAPVQYCSGGVGSNNFYGKGLVNALAASQ*
Ga0068854_10199417023300005578Corn RhizosphereVAALRNTATKMPCPAALDPGVDFFGAPVQVCKGGPGNNNFYGAGLVNAAAAAH*
Ga0068852_10164436013300005616Corn RhizosphereACPTELDPGVAFFGAPVQYCSGGVGSNNFYGKGLVNAVAASQ*
Ga0066903_10147594833300005764Tropical Forest SoilDPGVDFFGAPVQICNGGVGSNNFYGKGLVNALAASQ*
Ga0066903_10385632713300005764Tropical Forest SoilPDMSVGSVVALLRKTATGQGCPAALDPGVEFFGAPVQYCKGGVGSNNFYGKGLVDALAAGTP*
Ga0068851_1091969223300005834Corn RhizospherePGVEFFGAPVQYCSGGSGSNNFYGKGLVNALAASH*
Ga0068858_10039792913300005842Switchgrass RhizosphereRKTTTSLACPKALDPGVAFFGAPVQVCSGGKGSNSFFGAGLVNALAAAQ*
Ga0068862_10114512513300005844Switchgrass RhizosphereVALLRSTATGQACPTELDPGVAFFGAPVQYCSGGVGSNNFYGKGLVNALAASQ*
Ga0081539_1011961323300005985Tabebuia Heterophylla RhizosphereLAPGVEFFGAPVQVCSGGSGSNNFYGAGLVNALAAASR*
Ga0074056_1173478013300006574SoilPALDPGVEFFGAPVQVCRGGSGSNNFYGKGLVNALAASH*
Ga0074050_1156550913300006577SoilGMSQGAVVALLRSTATGQGCPAALDPGVAFFGAPVQFCKGGAGNNNFYGKGLLNALAAASR*
Ga0074050_1192711023300006577SoilIRAAHPGMSVGAVVAMLRSTATGLACPSALDPGVDFFGAPVQHCSGGVGSNNFYGKGLVNALAASR*
Ga0074060_1195481013300006604SoilHPGMSRGAVVALLRSTATGQACPTALDPGVDFFGAPVQHCSGGVGSNNFYGKGLVNALAASR*
Ga0079222_1199388623300006755Agricultural SoilRRTATPQGCPAALDPGVAFFGAPVQVCSGGVGNNNFYGKGLVNALAAATS*
Ga0066659_1125574113300006797SoilLRRTATKLPCPATHDPGVEFVGVPLQICTGGTGSNSFYGAGLVNALAAARD*
Ga0075421_10150447513300006845Populus RhizosphereVAKLRKSATSLTCPAALDPGVAFFGAPVQFCSGGKGSNSFYGAGLVNALAAAR*
Ga0075424_10122349723300006904Populus RhizospherePGMPVGAVVATLRGTATPLPCPTALDPGVVFFGAPEQFCSGDTASNNFYGKGLVNALAAASR*
Ga0074063_1312814723300006953SoilAIDPGVAFFGAPLQTCTGGKGSNSFFGSGLVNAQAAATR*
Ga0075435_10038045733300007076Populus RhizosphereTATGMGCPAALDPGVAFFGAPVQHCAGGTGSNNFYGAGLVNALAASQ*
Ga0066710_10186731313300009012Grasslands SoilLDPGVVFFDAPVQICAGGIGGNNFFGAGLINALDAAKK
Ga0099827_1142405823300009090Vadose Zone SoilVVSALRRTATAQPCPTALDPGVAFFGAPVQFCSGGIGSNNFYGAGLVNAQAAASN*
Ga0066709_10111638013300009137Grasslands SoilTAPPLACPTALDPGVAFFGAPVQVCSGEPSSNNFYGAGLVNALAAANR*
Ga0066709_10414965613300009137Grasslands SoilGSVVALLKQVATKMPCPGVLDPGVAFFEAPVQTCSGGVGSNNFFGTGLVNALGAATK*
Ga0114129_1034102553300009147Populus RhizospherePGVEFFGAPLQVCVGGIGTNNFFGAGLVNALAAARS*
Ga0105242_1163719323300009176Miscanthus RhizosphereGRGGCPGGRPCPAALDPGVVFFGAPVQVCSGGSGNNNFYGKGLVNALAASH*
Ga0105248_1212697113300009177Switchgrass RhizosphereLIRAAHPGMSVGAVVAMLRSTATGQACPTELDPGVDFFDAPVQYCSGGVGSNNFYGKGLVNAVAASQ*
Ga0105249_1196105023300009553Switchgrass RhizosphereMLQITATGQACPAALDPGVEFFGAPVQTCTGGSSRNSFYGHGLVNALAASH*
Ga0126309_1011608423300010039Serpentine SoilMPGGAVAAFLRKTATKMPCPTQHDPGVEFFEVPLQVCKGGLGSNSYFGAGLVNALSDVTS
Ga0134070_1034903613300010301Grasslands SoilMSVGAVVATLKSTATPLACPTALDPGVAFFGAPEQFCSGDPDSNNFYGAGLVNALAAANR
Ga0126377_1035722633300010362Tropical Forest SoilQHPNMSVGAVVNVIRGTATAQGCPAALDPGVVFFAAPEQFCKGGAGSNNFYGKGLLNALAAASR*
Ga0105239_1042758633300010375Corn RhizosphereAVVSMLQITATGQACPAALDPGVEFFGAPVQTCTGGSSRNSFYGHGLVNALAASH*
Ga0134124_1022956833300010397Terrestrial SoilRRGATSQPCPTALDAGVEFFGAPVQVCAGGTGSNNFYGAGLVNAVAAGS*
Ga0134122_1294609913300010400Terrestrial SoilALRNTATKMPCPAALDPGVDFFGAPVQVCKGGPGNNNFYGAGLVNAAAAAH*
Ga0138513_10007297413300011000SoilRNTATGMPCPTEHDPGVEFFGAPEQFCSGGIGSNNFYGAGLVNALAASQ*
Ga0137365_1047309913300012201Vadose Zone SoilPGVLDPGVAFFEAPVQVCTGGIGGNSFFGSGLINALDGAKK*
Ga0137365_1136253513300012201Vadose Zone SoilCPSTHDPGVEFFGAPLQVCTGGPGSNSFFGSGLVNALAAAS*
Ga0137377_1032797023300012211Vadose Zone SoilATKLPCPTTHDPGIEFFEVPLQVCTGGAGSNSYYGAGLVNALEAARK*
Ga0150985_10963293913300012212Avena Fatua RhizospherePLPCPTALDPGVEFFGAPVQVCRGGTGNNNFYGAGLVNALAASR*
Ga0150985_12012869713300012212Avena Fatua RhizospherePNMPASAVVAALRSGATHQPCPTALDPGVEFFGAPVQVCRGGIGSNNFYGAGLVNAVAASS*
Ga0137387_1084577323300012349Vadose Zone SoilGAVVAILKQTATKMACPGVLDPGVEFFAAPVQVCSGGIGGNSFFGSGLINALDGAKK*
Ga0137373_1058644413300012532Vadose Zone SoilELDPGVEFFGAPEQFCVGGPGNNNFYGKGLVNALAASQ*
Ga0157292_1014840723300012900SoilGMSVGAVVALLRSTETGQACPTELDPGVAFFGAPVQYCSGGVGSNNFYGKGLVNALAASQ
Ga0157298_1017443023300012913SoilALDPGVDFFGAPVQHCSGGVGNNNFYGKGLVDALAASH*
Ga0164300_1070099623300012951SoilGAVISVIRGTATAQGCPAALDPGVVFFGAPEQFCKGGTGSNNFYGKGLLNALAAASR*
Ga0164302_1151566213300012961SoilAQPCPPALDPGVDFFGAPVQVCSGGSGNNNFYGKGLVNALAASH*
Ga0164304_1163759133300012986SoilVAPDPATHQPCPTALDPGVEFFGAPVQVCRGGIGSNNFYGAGLVNAVAASS*
Ga0164306_1042325333300012988SoilGAAMTPASAVVAALRSGATHQPCPTALDPGVEFFGAPVQVCRGGIGSNNFYGAGLVNAVAASS*
Ga0164306_1068046523300012988SoilDPGVDFFGAPVQVCSGGSGNNNFYGKGLVNALAASH*
Ga0164306_1112786523300012988SoilSRNAVVAMLRSTATGQPCPTAPDPGVAFFGAPEQFCSGGSGNNNFYGKGLVNALAAGH*
Ga0157378_1261311013300013297Miscanthus RhizospherePTAPDPGVAFFGAPEQFCSGGSGNNNFYGKGLVNALAASH*
Ga0157378_1302350513300013297Miscanthus RhizosphereMSWGAVVAELRNTATNQACPTALDPGVEFFGAPVQVCKGGAGSNNFYGTGLVNAAAAAG*
Ga0157375_1320037313300013308Miscanthus RhizosphereLRQGAHHLSCPAELDPGVEFFEAPVQVCKGGIGSNNFYGAGLVDAVAASR*
Ga0075303_105479013300014299Natural And Restored WetlandsTPLPCPAELDPGVEIFGFSPPRCSGGAGNNSFYGKGLINALLAGKA*
Ga0163163_1055562913300014325Switchgrass RhizosphereTGQPCPAALDPGVVFFGAPVQVCSGGSGNNNFYGKGLVNALAAASR*
Ga0163163_1139431413300014325Switchgrass RhizosphereSTATGQACPTELDPGVAFFGAPVQYCSGGVGSNNFYGKGLVNAVAASQ*
Ga0157376_1257158123300014969Miscanthus RhizosphereGAVVAALRNTATKMPCPAALDPGVDFFGAPVQVCKGGPGNNNFYGAGLVNAAAAAH*
Ga0132256_10202792613300015372Arabidopsis RhizosphereRSQPCPTSLDPGVEFFGAPVQVCAGGTGSNNFYGAGLVNAVAAGN*
Ga0132257_10268131013300015373Arabidopsis RhizosphereNTATPQPCPSALDPGVEFFGAPVQVCSGGTGSNNFYGAGLVNALAASR*
Ga0132255_10216401223300015374Arabidopsis RhizosphereSRGAVIAMLRSTATGQACPAALDPGVEFFEAPVQTCSGGTGSNNFYGKGLVNALAASH*
Ga0132255_10279868113300015374Arabidopsis RhizosphereMSRNAVVAMLRSTASGQPCPTALDPGVDFFGAPVQHCSGGSGNNNFYGKGLVNAWAASH*
Ga0182040_1064129513300016387SoilMPCPPALDPGVDFFGAPVQVCQGGIGSNNFYGAGLVNAVAASR
Ga0184608_1038595813300018028Groundwater SedimentPGMSRGAVVALLRSTATGQACPTALDPGVDFFGAPVQYCSGGAGSNNFYGKGLVNALAAS
Ga0187788_1010759913300018032Tropical PeatlandRAQHPKMSAGAVVATLRNSATPQGCPAALDPGVAFFGAPVQVCSGGTGSNNFYGKGLLNALAAANR
Ga0193692_111120713300020000SoilMGLACPAALDPGVEFFEAPVQTCAGGTGSNNFYGKGLVNALAASR
Ga0247751_102294313300023069SoilACPTALDPGVDFFDAPVQYCSGGVGSNNFYGKGLVNALAASQ
Ga0207653_1028993723300025885Corn, Switchgrass And Miscanthus RhizosphereTAQPCPPALDPGVDFFGAPVQVCSGGSGNNNFYGKGLVNALAASH
Ga0207654_1008041443300025911Corn RhizosphereCPPALDPGVDFFGAPVQVCSGGSGNNNFYGKGLVNALAASH
Ga0207687_1046857223300025927Miscanthus RhizosphereVVALLRSTATGQACPTELDPGVAFFGAPVQYCSGGVGSNNFYGKGLVNAVAASQ
Ga0207644_1067696513300025931Switchgrass RhizosphereALDPGVDFFDAPVQYCSGGVGSNNFYGKGLVNALAASQ
Ga0207686_1033919223300025934Miscanthus RhizospherePQGAVAALLRNTASAQPCPPALDPGVDFFGAPVQVCSGGSGNNNFYGKGLVNALAASH
Ga0207686_1082048013300025934Miscanthus RhizosphereLRNTATKMPCPAALDPGVDFFGAPVQVCKGGPGNNNFYGAGLVNAAAAAH
Ga0207670_1020788013300025936Switchgrass RhizospherePQGAVAALLRNTATAQPCPPALDPGVDFFGAPVQVCSGGSGNNNFYGKGLVNALAASH
Ga0207711_1178621923300025941Switchgrass RhizospherePQGAVAALLRNTATAQPCPPALDPGVDFFGAPVQVCSGGSGNNNVYGKGLVNALAASH
Ga0207689_1013032223300025942Miscanthus RhizosphereMPQGAVAALLRNTASAQPCPPALDPGVDFFGAPVQVCSGGSGNNNFYGKGLVNALAASH
Ga0207679_1100910223300025945Corn RhizosphereQGCPAALDPGVVFFGAPVQVCKGGTGNNNFYGKGLVNALAAASR
Ga0207668_1092070223300025972Switchgrass RhizosphereMLQITATGQACPAALDPGVEFFGAPVQTCTGGSSRNSFYGHGLVNALAASH
Ga0207703_1203320813300026035Switchgrass RhizosphereAKLRKTTTSLACPKALDPGVAFFGAPVQVCSGGKGSNSFFGAGLVNALAAAQ
Ga0207702_1164947613300026078Corn RhizosphereRNTATAQPCPPALDPGVDFFGAPVQVCSGGSGNNNFYGKGLVNALAASH
Ga0207702_1203804513300026078Corn RhizosphereMSQGAVAALLRSTATGLPCPPALDPGVAFFDAPVQVCSGGPGSNNFYGKGLVNALAAASR
Ga0207675_10260161923300026118Switchgrass RhizosphereATALPCPTALDPGVEFFGAPEQFCVGGPGNNNFYGKGLVNALAASQ
Ga0207698_1032389513300026142Corn RhizosphereACPTELDPGVAFFGAPVQYCSGGVGSNNFYGKGLVNAVAASQ
Ga0209058_112080413300026536SoilPGVEFFGAPLQICTGGPGSNSYYGAGLVNALAAARD
Ga0209798_1026553823300027843Wetland SedimentALDPGVAFFEAPVQVCTGGSGSNNFYGAGMVNAAAAGR
Ga0268266_1125539613300028379Switchgrass RhizospherePGMPQGAVAALLRNTGTAQPCPPALDPGVDFFGAPVQVCSGGSGNNNFYGKGLVNALAAS
Ga0268266_1228782713300028379Switchgrass RhizosphereDPGVDFFGAPVQVCKGGPGNNNFYGAGLVNAAAAAH
Ga0247822_1034982713300028592SoilDPGVEFFGAPVQFCSGGSGNNNFYGKGLVNALAAASS
Ga0307313_1014034223300028715SoilAALLRRTATAQPCPAALDPGVVFFGAPVQFCRGGAGNNNFYGKGLVNALAASQ
Ga0307311_1006068113300028716SoilACPGVLDPGVEFFGAPVQFCSGGIGGNNFFGAGLVNALSAANR
Ga0307307_1017797223300028718SoilPGVLDPGVEFFGAPVQFCSGGIGGNSFFGAGLVNALSAANR
Ga0307319_1018695723300028722SoilPCPGVLDPGVAFFGAPVQVCSGGLGSNSFFGAGLVNAFAAASR
Ga0307290_1037250823300028791SoilATKLPCPTTHDPGVEFFEVPLQVCTGGAGSNSYYGAGLVNALEAARN
Ga0307287_1012157623300028796SoilPMGSVVALLRQTATKLPCPTELDPGVAFFGAPVQVCKGGVGSNSFYGSGLVNALNAVTKK
Ga0307305_1029614313300028807SoilACPGVLDPGVEFFGAPVQVCSGGIGGNSFFGAGLVNALSAANR
Ga0307296_1077426323300028819SoilATGQPCPAALDPGVEFFGAPVQFCSGGSGNNNFYGKGLVNALTASR
Ga0307304_1035362113300028885SoilPGVLDPGVEFFGAPVQFCSGGIGGNNFFGAGLVNALSAANR
Ga0318542_1053870223300031668SoilTATGQPCPVALDPGVAFFGAPVQVCKGGSGSNNFYGAGLVNALAASR
Ga0307468_10210790623300031740Hardwood Forest SoilPGVDFFGAPVQHCKGGSGSNNFYGKGLVNALAASN
Ga0318502_1059707323300031747SoilLLRSTATGQPCPVALDPGVAFFGAPVQVCKGGSGSNNFYGAGLVNALAASR
Ga0310900_1035518313300031908SoilGAVAALLRNTATAQPCPPALDPGVDFFGAPVQVCSGGSGNNNFYGKGLVNALAASH
Ga0306923_1063915413300031910SoilAVVAALRSGATHMPCPPALDPGVDFFGAPVQVCQGGIGSNNFYGAGLVNAVAASR
Ga0308175_10263656423300031938SoilTALDPGVEFFGAPVQVCRGGTGNNNFYGAGLVNALAASR
Ga0308176_1118535013300031996SoilHLSCPNALDPGVEFFAAPVQVCRGGTGSNNFYGAGLVNAMAASQ
Ga0306920_10218129213300032261SoilAALLRNTATAQPCPPALDPGVDFFGAPMQFCSGGPGNNNFYGKGLVNALAAASQ
Ga0315287_1050913033300032397SedimentGAVVAALRNTATKQPCPAALDPGVAFFGAPVQVCTGGLGSNSFYGSGLVDAFAAATR


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