Metagenome / Metatranscriptome Family F074696

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F074696
Family Type	Metagenome / Metatranscriptome
Number of Sequences	119
Average Sequence Length	54 residues
Representative Sequence	FSYQGTRVHGSAEASGQDAVFVAANFSATYGGHGLSITSVRITGVMRSD
Number of Associated Samples	97
Number of Associated Scaffolds	119

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	100.00 %
% of genes from short scaffolds (< 2000 bps)	93.28 %
Associated GOLD sequencing projects	88
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.35

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (96.639 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (30.252 % of family members)
Environment Ontology (ENVO)	Unclassified (43.697 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (63.866 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 33.77% Coil/Unstructured: 66.23%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.35
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.35
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 119 Family Scaffolds
PF13884	Peptidase_S74	5.04
PF03544	TonB_C	3.36
PF10996	Beta-Casp	1.68
PF08002	DUF1697	1.68
PF12680	SnoaL_2	1.68
PF02965	Met_synt_B12	1.68
PF01575	MaoC_dehydratas	0.84
PF08734	GYD	0.84
PF11737	DUF3300	0.84
PF03631	Virul_fac_BrkB	0.84
PF01177	Asp_Glu_race	0.84
PF02520	ANIS5_cation-bd	0.84
PF04430	DUF498	0.84
PF00155	Aminotran_1_2	0.84
PF02010	REJ	0.84

COG ID	Name	Functional Category	% Frequency in 119 Family Scaffolds
COG0810	Periplasmic protein TonB, links inner and outer membranes	Cell wall/membrane/envelope biogenesis [M]	3.36
COG1410	Methionine synthase I, cobalamin-binding domain	Amino acid transport and metabolism [E]	1.68
COG3797	Uncharacterized conserved protein, DUF1697 family	Function unknown [S]	1.68
COG1295	Uncharacterized membrane protein, BrkB/YihY/UPF0761 family (not an RNase)	Function unknown [S]	0.84
COG1504	Uncharacterized conserved protein, DUF498 domain	Function unknown [S]	0.84
COG3737	Uncharacterized protein, contains Mth938-like domain	Function unknown [S]	0.84
COG4274	Uncharacterized conserved protein, contains GYD domain	Function unknown [S]	0.84

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	96.64 %
Unclassified	root	N/A	3.36 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	96.64 %
Unclassified	root	N/A	3.36 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	96.64 %
Unclassified	root	N/A	3.36 %

Name	Rank	Taxonomy	Distribution
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	52.10 %
Unclassified	root	N/A	3.36 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.84 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	50.42 %
Unclassified	root	N/A	3.36 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	1.68 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.84 %

Name	Rank	Taxonomy	Distribution
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	42.02 %
Unclassified	root	N/A	3.36 %
Spartobacteria	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria	1.68 %
Phycisphaerae	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae	1.68 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.84 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	42.02 %
Unclassified	root	N/A	3.36 %
Phycisphaerales	order	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → Phycisphaerales	1.68 %
Chthoniobacterales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales	1.68 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.84 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	42.02 %
Unclassified	root	N/A	3.36 %
unclassified Phycisphaerales	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → Phycisphaerales → unclassified Phycisphaerales	1.68 %
Chthoniobacteraceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae	1.68 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.84 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	42.02 %
Unclassified	root	N/A	3.36 %
Candidatus Udaeobacter	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter	1.68 %
Phycisphaerales bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → Phycisphaerales → unclassified Phycisphaerales → Phycisphaerales bacterium	1.68 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.84 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	42.02 %
Unclassified	root	N/A	3.36 %
Candidatus Udaeobacter copiosus	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	1.68 %
Phycisphaerales bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → Phycisphaerales → unclassified Phycisphaerales → Phycisphaerales bacterium	1.68 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.84 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2166559005\|cont_contig08284	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1693	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_100593467	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	568	Open in IMG/M
3300002128\|JGI24036J26619_10045352	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	851	Open in IMG/M
3300004114\|Ga0062593_101393622	All Organisms → cellular organisms → Bacteria	749	Open in IMG/M
3300004157\|Ga0062590_102153240	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	583	Open in IMG/M
3300005166\|Ga0066674_10089692	All Organisms → cellular organisms → Bacteria	1421	Open in IMG/M
3300005172\|Ga0066683_10053003	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2396	Open in IMG/M
3300005178\|Ga0066688_10963421	All Organisms → cellular organisms → Bacteria	522	Open in IMG/M
3300005293\|Ga0065715_10562068	All Organisms → cellular organisms → Bacteria	733	Open in IMG/M
3300005332\|Ga0066388_102828361	Not Available	887	Open in IMG/M
3300005332\|Ga0066388_104520230	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	708	Open in IMG/M
3300005354\|Ga0070675_101436135	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	636	Open in IMG/M
3300005435\|Ga0070714_100306123	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1482	Open in IMG/M
3300005445\|Ga0070708_101786347	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	571	Open in IMG/M
3300005446\|Ga0066686_10749774	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	654	Open in IMG/M
3300005450\|Ga0066682_10616371	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	679	Open in IMG/M
3300005451\|Ga0066681_10699172	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	617	Open in IMG/M
3300005540\|Ga0066697_10306649	All Organisms → cellular organisms → Bacteria	932	Open in IMG/M
3300005553\|Ga0066695_10561811	All Organisms → cellular organisms → Bacteria	691	Open in IMG/M
3300005555\|Ga0066692_10550223	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	730	Open in IMG/M
3300005556\|Ga0066707_10668557	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	655	Open in IMG/M
3300005558\|Ga0066698_10121266	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1743	Open in IMG/M
3300005558\|Ga0066698_10227953	All Organisms → cellular organisms → Bacteria	1280	Open in IMG/M
3300005564\|Ga0070664_101700817	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	598	Open in IMG/M
3300005566\|Ga0066693_10311771	All Organisms → cellular organisms → Bacteria	630	Open in IMG/M
3300005574\|Ga0066694_10065558	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1667	Open in IMG/M
3300005586\|Ga0066691_10366580	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	853	Open in IMG/M
3300005587\|Ga0066654_10452246	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	702	Open in IMG/M
3300005616\|Ga0068852_101112372	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	810	Open in IMG/M
3300005764\|Ga0066903_105411973	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	674	Open in IMG/M
3300005764\|Ga0066903_107792386	All Organisms → cellular organisms → Bacteria	551	Open in IMG/M
3300005764\|Ga0066903_107983051	All Organisms → cellular organisms → Bacteria	543	Open in IMG/M
3300005764\|Ga0066903_108854734	All Organisms → cellular organisms → Bacteria	511	Open in IMG/M
3300005844\|Ga0068862_101846473	All Organisms → cellular organisms → Bacteria	614	Open in IMG/M
3300006031\|Ga0066651_10238112	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	965	Open in IMG/M
3300006031\|Ga0066651_10332480	All Organisms → cellular organisms → Bacteria	816	Open in IMG/M
3300006034\|Ga0066656_10215481	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → Phycisphaerales → unclassified Phycisphaerales → Phycisphaerales bacterium	1226	Open in IMG/M
3300006034\|Ga0066656_10907807	All Organisms → cellular organisms → Bacteria	564	Open in IMG/M
3300006791\|Ga0066653_10316586	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	786	Open in IMG/M
3300006791\|Ga0066653_10634732	All Organisms → cellular organisms → Bacteria	545	Open in IMG/M
3300006794\|Ga0066658_10433569	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	715	Open in IMG/M
3300006796\|Ga0066665_11389374	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	543	Open in IMG/M
3300006797\|Ga0066659_11022035	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	691	Open in IMG/M
3300006797\|Ga0066659_11320563	All Organisms → cellular organisms → Bacteria	602	Open in IMG/M
3300006881\|Ga0068865_102194797	All Organisms → cellular organisms → Bacteria	503	Open in IMG/M
3300006954\|Ga0079219_12340997	All Organisms → cellular organisms → Bacteria	517	Open in IMG/M
3300009012\|Ga0066710_100366371	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2136	Open in IMG/M
3300009137\|Ga0066709_101526448	All Organisms → cellular organisms → Bacteria	962	Open in IMG/M
3300009137\|Ga0066709_101954247	All Organisms → cellular organisms → Bacteria	814	Open in IMG/M
3300010040\|Ga0126308_10489194	All Organisms → cellular organisms → Bacteria	830	Open in IMG/M
3300010047\|Ga0126382_12433614	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	509	Open in IMG/M
3300010303\|Ga0134082_10187716	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	844	Open in IMG/M
3300010320\|Ga0134109_10064215	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1234	Open in IMG/M
3300010329\|Ga0134111_10560975	All Organisms → cellular organisms → Bacteria	507	Open in IMG/M
3300010335\|Ga0134063_10211684	All Organisms → cellular organisms → Bacteria	915	Open in IMG/M
3300010366\|Ga0126379_11299402	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	834	Open in IMG/M
3300010366\|Ga0126379_12627514	All Organisms → cellular organisms → Bacteria	601	Open in IMG/M
3300010376\|Ga0126381_101234546	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1080	Open in IMG/M
3300012198\|Ga0137364_10154919	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → Phycisphaerales → unclassified Phycisphaerales → Phycisphaerales bacterium	1659	Open in IMG/M
3300012198\|Ga0137364_11165117	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	578	Open in IMG/M
3300012201\|Ga0137365_11024436	All Organisms → cellular organisms → Bacteria	598	Open in IMG/M
3300012205\|Ga0137362_11225685	All Organisms → cellular organisms → Bacteria	635	Open in IMG/M
3300012205\|Ga0137362_11254485	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	626	Open in IMG/M
3300012211\|Ga0137377_11086400	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	730	Open in IMG/M
3300012211\|Ga0137377_11757480	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	540	Open in IMG/M
3300012354\|Ga0137366_11229352	All Organisms → cellular organisms → Bacteria	508	Open in IMG/M
3300012357\|Ga0137384_11130764	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	626	Open in IMG/M
3300012362\|Ga0137361_10142497	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2135	Open in IMG/M
3300012362\|Ga0137361_10183714	All Organisms → cellular organisms → Bacteria	1885	Open in IMG/M
3300012582\|Ga0137358_10885487	All Organisms → cellular organisms → Bacteria	586	Open in IMG/M
3300012908\|Ga0157286_10142181	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	755	Open in IMG/M
3300012923\|Ga0137359_10139624	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2157	Open in IMG/M
3300012923\|Ga0137359_10498323	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1075	Open in IMG/M
3300012972\|Ga0134077_10413210	All Organisms → cellular organisms → Bacteria	585	Open in IMG/M
3300013296\|Ga0157374_10703432	All Organisms → cellular organisms → Bacteria	1024	Open in IMG/M
3300014150\|Ga0134081_10070694	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1066	Open in IMG/M
3300014157\|Ga0134078_10157361	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	898	Open in IMG/M
3300015077\|Ga0173483_10090611	All Organisms → cellular organisms → Bacteria	1254	Open in IMG/M
3300015357\|Ga0134072_10190470	All Organisms → cellular organisms → Bacteria	703	Open in IMG/M
3300015357\|Ga0134072_10481801	All Organisms → cellular organisms → Bacteria	507	Open in IMG/M
3300015372\|Ga0132256_100557280	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1259	Open in IMG/M
3300015372\|Ga0132256_101225182	All Organisms → cellular organisms → Bacteria	864	Open in IMG/M
3300015373\|Ga0132257_100126009	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	2980	Open in IMG/M
3300016270\|Ga0182036_11058805	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	670	Open in IMG/M
3300016422\|Ga0182039_10866571	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	805	Open in IMG/M
3300018431\|Ga0066655_10331791	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	995	Open in IMG/M
3300018433\|Ga0066667_10422188	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1083	Open in IMG/M
3300018482\|Ga0066669_10512177	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1040	Open in IMG/M
3300018482\|Ga0066669_12120453	All Organisms → cellular organisms → Bacteria	531	Open in IMG/M
3300019789\|Ga0137408_1022880	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	740	Open in IMG/M
3300019868\|Ga0193720_1026603	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	824	Open in IMG/M
3300019875\|Ga0193701_1090867	All Organisms → cellular organisms → Bacteria	579	Open in IMG/M
3300019887\|Ga0193729_1014135	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	3548	Open in IMG/M
3300020004\|Ga0193755_1223302	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	522	Open in IMG/M
3300021478\|Ga0210402_11514893	Not Available	598	Open in IMG/M
3300024186\|Ga0247688_1073268	All Organisms → cellular organisms → Bacteria	573	Open in IMG/M
3300025315\|Ga0207697_10042130	All Organisms → cellular organisms → Bacteria	1875	Open in IMG/M
3300025926\|Ga0207659_11204219	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	651	Open in IMG/M
3300025930\|Ga0207701_10212368	All Organisms → cellular organisms → Bacteria	1697	Open in IMG/M
3300025939\|Ga0207665_10119941	All Organisms → cellular organisms → Bacteria	1857	Open in IMG/M
3300026307\|Ga0209469_1040527	All Organisms → cellular organisms → Bacteria	1511	Open in IMG/M
3300026307\|Ga0209469_1056757	All Organisms → cellular organisms → Bacteria	1218	Open in IMG/M
3300026312\|Ga0209153_1198326	Not Available	708	Open in IMG/M
3300026324\|Ga0209470_1024984	All Organisms → cellular organisms → Bacteria	3154	Open in IMG/M
3300026324\|Ga0209470_1075874	All Organisms → cellular organisms → Bacteria	1551	Open in IMG/M
3300026325\|Ga0209152_10227708	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	696	Open in IMG/M
3300026334\|Ga0209377_1291148	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	542	Open in IMG/M
3300026342\|Ga0209057_1179845	All Organisms → cellular organisms → Bacteria	610	Open in IMG/M
3300026524\|Ga0209690_1054314	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1776	Open in IMG/M
3300028878\|Ga0307278_10539826	All Organisms → cellular organisms → Bacteria	508	Open in IMG/M
3300030844\|Ga0075377_11630096	All Organisms → cellular organisms → Bacteria	537	Open in IMG/M
3300031231\|Ga0170824_107127389	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	866	Open in IMG/M
3300031231\|Ga0170824_128375642	All Organisms → cellular organisms → Bacteria	516	Open in IMG/M
3300031446\|Ga0170820_10104515	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1021	Open in IMG/M
3300031474\|Ga0170818_101880670	All Organisms → cellular organisms → Bacteria	4613	Open in IMG/M
3300031879\|Ga0306919_10999009	All Organisms → cellular organisms → Bacteria	640	Open in IMG/M
3300031912\|Ga0306921_12066882	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	605	Open in IMG/M
3300032001\|Ga0306922_11062845	All Organisms → cellular organisms → Bacteria	832	Open in IMG/M
3300032828\|Ga0335080_10940291	Not Available	884	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	89.08%
Host-Associated	Host-Associated	10.08%
Engineered	Engineered	0.84%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	89.08%
Plants	Host-Associated → Plants	10.08%
Modeled	Engineered → Modeled	0.84%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	89.08%
Rhizoplane	Host-Associated → Plants → Rhizoplane	5.04%
Rhizosphere	Host-Associated → Plants → Rhizosphere	5.04%
Simulated Communities (Sequence Read Mixture)	Engineered → Modeled → Simulated Communities (Sequence Read Mixture)	0.84%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	80.67%
Loam	Environmental → Terrestrial → Soil → Loam	7.56%
Soil	Host-Associated → Plants → Rhizosphere → Soil	4.20%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.36%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.68%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.84%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.84%
Unclassified	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified	0.84%

Habitat	Taxonomy	Distribution
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	37.82%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	30.25%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	10.08%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	5.04%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	4.20%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.36%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.52%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.52%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.68%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.84%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.84%
Unclassified	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified → Unclassified	0.84%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	30.25%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	12.61%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	7.56%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.88%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	5.88%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	5.04%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.20%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.36%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	3.36%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.52%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.68%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	1.68%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.68%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.68%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	1.68%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.84%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.84%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.84%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.84%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.84%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.84%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.84%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.84%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.84%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.84%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.84%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.84%
Simulated	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified → Unclassified → Simulated	0.84%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2166559005	Simulated microbial communities from Lyon, France	Engineered	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300002128	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300005166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005293	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental	Open in IMG/M
3300005450	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131	Environmental	Open in IMG/M
3300005451	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130	Environmental	Open in IMG/M
3300005540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146	Environmental	Open in IMG/M
3300005553	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144	Environmental	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental	Open in IMG/M
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005566	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_142	Environmental	Open in IMG/M
3300005574	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143	Environmental	Open in IMG/M
3300005586	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140	Environmental	Open in IMG/M
3300005587	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103	Environmental	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006031	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100	Environmental	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006791	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102	Environmental	Open in IMG/M
3300006794	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010303	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09182015	Environmental	Open in IMG/M
3300010320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_11112015	Environmental	Open in IMG/M
3300010329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_11112015	Environmental	Open in IMG/M
3300010335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012908	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S089-202R-1	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012972	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300014150	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300014157	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental	Open in IMG/M
3300015357	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_0_1 metaG	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300019789	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300019868	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2s1	Environmental	Open in IMG/M
3300019875	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3s2	Environmental	Open in IMG/M
3300019887	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c2	Environmental	Open in IMG/M
3300020004	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1a2	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300024186	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK29	Environmental	Open in IMG/M
3300025315	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026307	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123 (SPAdes)	Environmental	Open in IMG/M
3300026312	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120 (SPAdes)	Environmental	Open in IMG/M
3300026324	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125 (SPAdes)	Environmental	Open in IMG/M
3300026325	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107 (SPAdes)	Environmental	Open in IMG/M
3300026334	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141 (SPAdes)	Environmental	Open in IMG/M
3300026342	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146 (SPAdes)	Environmental	Open in IMG/M
3300026524	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150 (SPAdes)	Environmental	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300030844	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA11 EcM (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
cont_0284.00001220	2166559005	Simulated	RFTNSNSFHVRVEFSYNGTKVHGSAEASGKDAVFVPANYSATYGGHGTSITSVRIIGVMRSD
INPhiseqgaiiFebDRAFT_1005934671	3300000364	Soil	VRVEFSYQGTRARGSGEASGEDAVFVAAKFSATYSRPGISITSVRITGVMRSD*
JGI24036J26619_100453522	3300002128	Corn, Switchgrass And Miscanthus Rhizosphere	FISGTRSRGSGEASGEDAVFVGANFFATYGAGGLSITSARIKSVMRSD*
Ga0062593_1013936222	3300004114	Soil	FSYTGTRVHGSAEASGKDAVIVAANFSSTYGGNGLSITSARITGVMRSD*
Ga0062590_1021532402	3300004157	Soil	YHVRVEFSYSGTKVHGSAEASGQEAVFVPANYSATYGGHGTSITSVRINRVIRSD*
Ga0066674_100896921	3300005166	Soil	RVEFSYQGTRARGSGEASGNDAVFVAAKFSSTYGGHGISITSVRITGVMRSD*
Ga0066683_100530035	3300005172	Soil	SFPVRVEFSYHGTKMRGSGEASGEDAVFVAANYFATYGGHGISITSVQITGVMRSD*
Ga0066688_109634212	3300005178	Soil	PVRVEFSYQGTKARGSGEASGKDAVFVGANFFATFGGRGISITSVRITGVMQSD*
Ga0065715_105620681	3300005293	Miscanthus Rhizosphere	NSYHVRVEFSYSGTKVHGSAEASGQDAVFVPANYSATYGGRGISITSVRITGVTRSD*
Ga0066388_1028283611	3300005332	Tropical Forest Soil	RIARFTNSNSYPVRVEFSYQGTKARGSGEASGQDAVFVGANFFATYGARGLSITSVRITGVMRSD*
Ga0066388_1045202302	3300005332	Tropical Forest Soil	EFSYQGTKTRGSGEASGQDAVLVPGNFSATYGAQGLSITSVRITRVMRMD*
Ga0070675_1014361352	3300005354	Miscanthus Rhizosphere	SGTRSRGSGEASGEDAVFVGANFFATYGAGGLSITSARIKSVMRSD*
Ga0070714_1003061231	3300005435	Agricultural Soil	KNSNSFHVRVEFSYNGTRVHGSAEASGKDAVFVPANYSATYGGHGISITSVRITGVMRSD
Ga0070708_1017863472	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	RVARFTNSNSFPVRVEFSYQGTRVHGSGEASGEDAVFVAANFLATYGGHGLSITSVRITGVMRSD*
Ga0066686_107497742	3300005446	Soil	SAEASGQDAVFVAANFSATYGGHGLSITSVKITGVMRSD*
Ga0066682_106163712	3300005450	Soil	TKVHGSSEASGQDAVFVGANFAATYGGHGLSITSVRITGVMRSD*
Ga0066681_106991721	3300005451	Soil	RFTNSNSFPVRVEFSYNGTRLRGSGEASGEDAVFVAANYSATYGGHGISIMSVRITGVMRSD*
Ga0066697_103066492	3300005540	Soil	SGEDAVFVAANYSATYGGHGISIMSVRITGVMRSD*
Ga0066695_105618112	3300005553	Soil	EFSYNGTRVRGSGEASGEDAVFVAANYSATYGGHGISITSVRITGVMRSD*
Ga0066692_105502231	3300005555	Soil	ARGSGEASGKDAVFVGANFFATYGGRGISITSVRITGVMQSD*
Ga0066707_106685572	3300005556	Soil	QGTRARGSGEASGNDAVFVAAKFSSTYGGHGISITSVRINGVMRSD*
Ga0066698_101212663	3300005558	Soil	SGQDAVFVAGNFSATYGGHGLSITSVKITGVMRSD*
Ga0066698_102279532	3300005558	Soil	FKNSNSFPVRVEFSYNGTRVHGSAEASGKDAVIVPGNYSSTYGGNGLSITSARIIGVMRSD*
Ga0070664_1017008171	3300005564	Corn Rhizosphere	KVHGSAEASGQDAVFVPANYSATYGGHGISITSVRITRVMRSD*
Ga0066693_103117711	3300005566	Soil	ASGQDAVFVPANYSATYAGHGISITSVRITGVMRSD*
Ga0066694_100655585	3300005574	Soil	GSSRVARFTNSNSFPVRVEFSYHGTKMRGSGEASGEDAVFVAANYFATYGGHGISITSVQITGVMRSD*
Ga0066691_103665801	3300005586	Soil	FSYQGTRVHGSAEASGQDAVFVAANFSATYGGHGLSITSVRITGVMRSD*
Ga0066654_104522462	3300005587	Soil	SKVHGSGETSGNDAVFVAANFFATYGGKGLSVTSLRITGVMRSD*
Ga0068852_1011123722	3300005616	Corn Rhizosphere	AEASGQDAVFVPANYSATYGGHGVSITSVRITGVMRSD*
Ga0066903_1054119732	3300005764	Tropical Forest Soil	ARFTNSNSFPVRVEFSYQGTRVHGSGEASGADAVFVAANFFTTYGGHGLSITSVRITSVMRSD*
Ga0066903_1077923862	3300005764	Tropical Forest Soil	EFSYQGTKARGSGEASGHDAVLVPANYFATYGAQGLSITSVQITKVMRSD*
Ga0066903_1079830511	3300005764	Tropical Forest Soil	NSFPVRVEFSYQGTRARGSGEASGEGAVFVGAKFFATYGAHGLSITSVRITGVMRSD*
Ga0066903_1088547342	3300005764	Tropical Forest Soil	NSNSYPVRVEFSYQGTRARGSGEASGEDAVFVGANFFATYGARGLSITSVRIKGVMRSD*
Ga0068862_1018464731	3300005844	Switchgrass Rhizosphere	YESSGSSRVARFKNSNAYHVRVEFSYNGTKVHGSAEASGQDAVFVPANYSATYGGHGISFTSARITRVMRSD*
Ga0066651_102381123	3300006031	Soil	EASGQDAVFVAANFSATYGGHGLSITSVKITGVMRSD*
Ga0066651_103324802	3300006031	Soil	FKNSNSFHVRVEFSYNGTRVHGSAEASGHDAVFVPANYSATYDGHGISVTSVRITGVMRSD*
Ga0066656_102154813	3300006034	Soil	SGEASGEDAVFVAANYSATYGGHGISIMSVRITGVMRSD*
Ga0066656_109078072	3300006034	Soil	VRVEFSYSGTKVHGSAEASGQDAVFVPANYSATYDGHGISVTSVRITGVMRSD*
Ga0066653_103165861	3300006791	Soil	IAHFTNSNTFPVRVVFSYQGTRVHGAAEASGQDAVFVAANFSATYGGHGLSITSVKITGVMRSD*
Ga0066653_106347322	3300006791	Soil	RVARFKNSNPYHVRVEFSYNGTRVHGSAEASGHDAVFVPANYSATYDGHGISVTSVRITGVMRSD*
Ga0066658_104335692	3300006794	Soil	VHGSAEASGQDAVSVAANFSATYGGNGLSITSVRITGVMRSD*
Ga0066665_113893741	3300006796	Soil	ASGEDAVFVAANYSATYGGHGISIMSVRITGVMRSD*
Ga0066659_110220351	3300006797	Soil	GSSRVARFTNSNSFPVRVEFSYNGTRLRGSGEASGEDAVFVAANYSATYGGHGISIMSVRITGVMRSD*
Ga0066659_113205632	3300006797	Soil	GTRVHGSGEASGEDAVFVAANYSATYGGHGISIMSVRITGVMRSD*
Ga0068865_1021947971	3300006881	Miscanthus Rhizosphere	RVEFSYNGTKVHGSAETSGQDAVFVPANYSATYGGHGISITSVRITRVMRSD*
Ga0079219_123409972	3300006954	Agricultural Soil	FKNSNAYHVRVEFSYSGTKVHGSAEASGQDAVFVPANYSATYGGHGTSLTSVQINRVIRSD*
Ga0066710_1003663711	3300009012	Grasslands Soil	ARGSGEASGNDAVFVAAKFSSTYGGHGISITSVRINGVMRSD
Ga0066709_1015264481	3300009137	Grasslands Soil	GNDAVFIAAKFSSTYGGHGLSITSIRITGVMRSD*
Ga0066709_1019542471	3300009137	Grasslands Soil	SSRIARFTNSNTFPVRVEFSYQGTRVHGSAEASGQDAVFVAANFSATYGGHGLSITSVKITGVMRSD*
Ga0126308_104891941	3300010040	Serpentine Soil	VEFSYHGTKVRGSGEASGEDAVFVAANYFATYARNGLSITSVKITGVMRSD*
Ga0126382_124336141	3300010047	Tropical Forest Soil	IHIPSGWEFSYQGTRSRGSGEASGEDAVFVGANFFATYGAGGLSITSVRIKSVMRSD*
Ga0134082_101877162	3300010303	Grasslands Soil	HFTNSNSFHVRVEFSYQGTRVHGLSEASGEDAVFVPANYSATYGGRGLSITSVRIMGVMRSD*
Ga0134109_100642152	3300010320	Grasslands Soil	GSGEASGNDAVFIAAKFSSTYGGHGLSITSIRITGVMRSD*
Ga0134111_105609751	3300010329	Grasslands Soil	ESLGSSRVARFTNSNSFPVRVEFSYNGTKVHGSAEASGQDAVIVAANFFATYGGHGLSITSARIIGVMRSD*
Ga0134063_102116841	3300010335	Grasslands Soil	SRVARFTNSNSFPVRVEFSYKGTKLRGSGEASGEDAVFVAANYSATYGGHGISIMSVRITGVMRSD*
Ga0126379_112994021	3300010366	Tropical Forest Soil	ASGHDAVFVAANFFATYGAQGLSITSVQIKTVMRSD*
Ga0126379_126275142	3300010366	Tropical Forest Soil	TSRIARFTNSNSFPVRVEFSYQGTKVRGSGEASGQDAVFVAANFFATYGARGLSITSVQIKSVMHSD*
Ga0126381_1012345462	3300010376	Tropical Forest Soil	KVHGSAEASGEDAVFVGANFAATYGGHGLSITSVRITGVMRSD*
Ga0137364_101549193	3300012198	Vadose Zone Soil	SNSFPVRVEFSYNGTRLRGSGEASGEDAVFVAANYSATYGGHGISIMSVRITGVMRSD*
Ga0137364_111651171	3300012198	Vadose Zone Soil	NSFPVRVEFSYNGTRLRGSGEASGEDAVFVAANYSATYGDHGISIMSVRITGVMRSD*
Ga0137365_110244361	3300012201	Vadose Zone Soil	SYESSGSSRIARFTNSNSFPVRVEFSYQGTKARGSGEASGQDAVFVAANFFATYGARGLSITSVRITGVMRSD*
Ga0137362_112256851	3300012205	Vadose Zone Soil	YESLGSSRVARFTNSNSFPVRVEFSYNGTRVHGSAEASGEDAVFVAANFFATDGGHGLCITSARITGVMRSD*
Ga0137362_112544852	3300012205	Vadose Zone Soil	FTNSNSFPVRVEFSYQGTKARGSGEASSEDAVFVGANFFATYGARGISITSVRITGVMRSD*
Ga0137377_110864002	3300012211	Vadose Zone Soil	RARGSGDASAEDAVFVAGNFSATYGRPGISITSVRIKGVMRSD*
Ga0137377_117574801	3300012211	Vadose Zone Soil	GEASGEDAVFVAANYFATYGGSGISITSVRITGVMRSD*
Ga0137366_112293521	3300012354	Vadose Zone Soil	QGTRTRGSGEASGKDAVFVAANFFATYGALGLSITSVRITGVMRSD*
Ga0137384_111307641	3300012357	Vadose Zone Soil	RMRGSGEASGEDAVFVAANYFATYGGSGISITSVRITGVMRSD*
Ga0137361_101424973	3300012362	Vadose Zone Soil	SFPVRVEFSYNGTRVHGSGEASGEDAVFVAADYSATYGGHGISIMSVRITGVMRSD*
Ga0137361_101837141	3300012362	Vadose Zone Soil	YQGTKARGSGEASGKDAVFVGANFFATYGGRGISITSVRITGVMRSD*
Ga0137358_108854871	3300012582	Vadose Zone Soil	IARFTNSNSYPVRVEFSYQGTRARGSGDASGEDAVFVAGNFSATYGRPGISITSVRIKGVMRSD*
Ga0157286_101421811	3300012908	Soil	RSRGSGEASGEDAVFVGANFFAIYGAGGLSITSVRIKSVMRSD*
Ga0137359_101396244	3300012923	Vadose Zone Soil	ARFTNSNSFPVRVEFSYNGTRVHGSGEASGEDAVFVAADYSATYGGHGISIMSVRITGVMRSD*
Ga0137359_104983231	3300012923	Vadose Zone Soil	RVHGSAEASGQDAVFVAANFSATYGGHGLSITSVKITGVMRSD*
Ga0134077_104132101	3300012972	Grasslands Soil	PVRVEFSYHGTKMNGSGEASGEDAVFVAANYFATYGGHGISVTSVRISGVMRSD*
Ga0157374_107034321	3300013296	Miscanthus Rhizosphere	NSYHVRVEFSYSGTKVHGSAEASGQDAVFVPANYSATYGGHGISITSVRITGVTRSD*
Ga0134081_100706942	3300014150	Grasslands Soil	SFPVRVEFSYNGTRLRGSGEASGEDAVFVAANYSATYGGHGISIMSVRITGGMRSD*
Ga0134078_101573613	3300014157	Grasslands Soil	EASGEDAVFVAANYFATYGGHGVSITSVRITGIMLSD*
Ga0173483_100906112	3300015077	Soil	ESLGSSRVARFTNSNSFHVRVEFSYSGTRVHGSAEASGQDAVFVPANYSATYGGHGISIMSVRITGVMRSD*
Ga0134072_101904701	3300015357	Grasslands Soil	VSYESLGSSRIARFTNSNTYPVRVEFSYQGTRVHGSAEASGQDAVFVAANFSATYGGHGLSITSVKITGVMRSD*
Ga0134072_104818011	3300015357	Grasslands Soil	ESLGSSRIARFTNSNTYPVRVEFSYQGTRVHGSAETSGQDAVSVAANFSATYGGNGLSITSVRITGVMRSD*
Ga0132256_1005572801	3300015372	Arabidopsis Rhizosphere	GEASGHDAVFVPANFFATYGAQGLSVTSVQIKSVMRSD*
Ga0132256_1012251821	3300015372	Arabidopsis Rhizosphere	KVHGSAEASGQDAVFVPANYSATYGGHGISITSARITRVMRSD*
Ga0132257_1001260093	3300015373	Arabidopsis Rhizosphere	RVEFSYNGTKVHGSAEASGQDAVFVPANYSATYGGHGTSITSVRITRVMRSD*
Ga0182036_110588052	3300016270	Soil	YQGTRVHGSAEVSGQDAVNVAGNFSATYGGHGLSITSARITGVMRSD
Ga0182039_108665711	3300016422	Soil	ARFTNSNSFPVRVEFSYQGTRVHGSAEVSGQDAVNVAGNFSATYGGHGLSITSARITGVMRSD
Ga0066655_103317911	3300018431	Grasslands Soil	ARGTGEASGNDAVFVAAKFSSTYGGHGISITSVRINGVMRSD
Ga0066667_104221881	3300018433	Grasslands Soil	TKVRGSGEASGQDAVFVAANFFATYGARGLSITSVQIKSVMRSD
Ga0066669_105121773	3300018482	Grasslands Soil	NSYPVRVQFSYQGTKVHGSGETSGKDAVFVAANFFATYGGKGLSVTSVRITGVMRSV
Ga0066669_121204531	3300018482	Grasslands Soil	ESSGSSRVARFTNSNSFPVRVEFSYQGTKARGSGEASGEDAVFVGANFFATYGGRGISITSVRITGVMRSD
Ga0137408_10228803	3300019789	Vadose Zone Soil	SSRIARFTNSNTFPVRVEFSYQGTRVHGSAEASGQDAVFVAGNFSATYGGHGLSITSVKITGVMRSD
Ga0193720_10266032	3300019868	Soil	PVRVQFSYHGTKVHGSGETSGNDAVFVAANFFATYGGKGLSVTSVGITGVMRSD
Ga0193701_10908672	3300019875	Soil	VEFSYHGTKMHGSGEASGEDAVFVGANYSATYGGHGISITSVRIAGVMRSD
Ga0193729_10141355	3300019887	Soil	TVSYESMGSSRVARFKNSNSFPVRVEFSYNGTRVHGSAEASGKDAVIVPGNYSATYGGNGLSITSARIIGIMRSD
Ga0193755_12233021	3300020004	Soil	RFRNANSFPVRVEFSYQGTKARGSGEASGQDAVFVAANFFATYGARGLSITSVRITGVMRSD
Ga0210402_115148932	3300021478	Soil	FSYQGTKVHGSSEASGRDAVFVGANFSATYGGNGLSITSARIIGVMKSD
Ga0247688_10732682	3300024186	Soil	MSGTSRIARFTNSNSYHVRVEFSYQGTKARGSGEASGQDAVFVAANFFATYGAQGLSITSVQIKNVMRSD
Ga0207697_100421301	3300025315	Corn, Switchgrass And Miscanthus Rhizosphere	ESSGSSRVARFKNSNAYHVRVEFSYNGTKVHGSAEASGQDAVFVPANYSATYGGHGISITSVRITRVMRSD
Ga0207659_112042192	3300025926	Miscanthus Rhizosphere	EFISGTRSRGSGEASGEDAVFVGANFFATYGAGGLSITSARIKSVMRSD
Ga0207701_102123681	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	RIARFKNSNAYHVRVEFSYNGTRVHGSAEASGQDAVFVPANYSATYGGHGISITSVRITRVMRSD
Ga0207665_101199415	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	SYQGTKARGSGEASGQDAVFVGANFFATYGARGLSITSVRITGVMRSD
Ga0209469_10405274	3300026307	Soil	EASGEDAVFVAANYSATYGGHGISIMSVRITGVMRSD
Ga0209469_10567571	3300026307	Soil	FPVRVEFSYNGTKVHGSAEASGQDAVIVAANFFATYGGHGLSITSARIIGVMRSD
Ga0209153_11983261	3300026312	Soil	HVRVEFSYSGTKVHGSAETSGQDAVFVPANFSATYGGHGNSITAARITRVMRSD
Ga0209470_10249841	3300026324	Soil	GEASGEDAVFVAANYSATYGGHGISIMSVRITGVMRSD
Ga0209470_10758743	3300026324	Soil	FTNANSFPVRVEFSYHGTKMHGSGEASGEDAVFVAANYFATYGGHGVSITSVRISGVMRS
Ga0209152_102277081	3300026325	Soil	VHGSAEASGQDAVSVAANFSATYGGNGLSITSVRITGVMRSD
Ga0209377_12911481	3300026334	Soil	VHGSGEASGNDAVFIAAKFSSTYGGHGLSITSIRITGVMRSD
Ga0209057_11798451	3300026342	Soil	RFTNSNSFPVRVEFSYQGTKARGSGEASGEDAVFVGANFFATYGGRGISITSVRITGVMRSD
Ga0209690_10543144	3300026524	Soil	SYESGFGSSRVARFTNANSFPVRVEFSYHGTKMHGSGEASGKDAVFVAANYFATYGGHGVSITSVRISGVMRSD
Ga0307278_105398262	3300028878	Soil	TRVHGSAEASGKDAVIVAANFFATYGGHGLSITSARITGVMRSD
Ga0075377_116300961	3300030844	Soil	SSRVARFTNSNSFHVRVEFSYNGTRVHGSAEASGEDAVIVAGKFFATYGGNGLSITSARITGVMRSD
Ga0170824_1071273892	3300031231	Forest Soil	VHGSADASGQDAVFVPANYSATYGGQGISITSVRITNVIRSD
Ga0170824_1283756421	3300031231	Forest Soil	FTNSNSFHVRVEFSYNGTRVHGSAEASGQDAVFVPANYSATYGGHGLSITSVQITGVMRS
Ga0170820_101045151	3300031446	Forest Soil	TGTRVHGSAEASGKDAVFVPANYSATYGGQGLSITSVRITGVMRSD
Ga0170818_1018806709	3300031474	Forest Soil	VRVEFSYKGTRVHGSAEASGEDAVFVPANYSATYGGHGISIMSVRITGVMRSD
Ga0306919_109990092	3300031879	Soil	TNSNSFPVRVEFSYQGTRVHGSAEVSGQDAVNVAGNFSATYGGHGLSITSARITGVMRSD
Ga0306921_120668821	3300031912	Soil	QGTRVHGSAEASGQDAVLVAAEFSATYGGNGLSITSVRITGVMRAD
Ga0306922_110628452	3300032001	Soil	VEFSYQGTRARGSGEVSGEDAVFVGANFFATYGARELSITSVRIKGVMR
Ga0335080_109402912	3300032828	Soil	FSYQGTKVHGSSEASGQDAVFVGANFAATYGGNGLSITSVRITGVMRSD

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F074696

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences