Metagenome / Metatranscriptome Family F074676

Basic Information
Family ID	F074676
Family Type	Metagenome / Metatranscriptome
Number of Sequences	119
Average Sequence Length	49 residues
Representative Sequence	VRFLGLLALPGIWETASLLHGSLAVTALFTLGAALLGAWAIAVLREE
Number of Associated Samples	97
Number of Associated Scaffolds	119

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	48.74 %
% of genes near scaffold ends (potentially truncated)	18.49 %
% of genes from short scaffolds (< 2000 bps)	82.35 %
Associated GOLD sequencing projects	91
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.68

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (74.790 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (19.328 % of family members)
Environment Ontology (ENVO)	Unclassified (28.571 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (52.101 % of family members)

Multiple Sequence Alignments

Select alignment to view:

Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64. 1E4A_12190620 2Ga0066674_104274222 3Ga0066672_100797422 4Ga0066672_101586282 5Ga0066683_101573082 6Ga0066673_103415583 7Ga0066679_101491471 8Ga0066684_100569154 9Ga0066684_101077752 10Ga0066684_104987671 11Ga0066678_106944511 12Ga0066675_104975391 13Ga0070680_1013216373 14Ga0070709_107390823 15Ga0070708_1007598163 16Ga0070708_1017568242 17Ga0066689_109690791 18Ga0066682_107249101 19Ga0070681_106176372 20Ga0070707_1013488482 21Ga0070698_1001871253 22Ga0070698_1002106992 23Ga0070698_1009059352 24Ga0070699_1003116043 25Ga0070699_1007248453 26Ga0070730_100516743 27Ga0070731_105245482 28Ga0068853_1004597672 29Ga0066697_107342351 30Ga0066691_101184432 31Ga0066706_103682391 32Ga0075278_10046192 33Ga0070717_101506944 34Ga0070717_108451711 35Ga0066658_101950522 36Ga0066665_116086102 37Ga0066659_108436132 38Ga0066659_114944882 39Ga0066660_105228722 40Ga0099827_108666192 41Ga0099827_113243922 42Ga0066709_1001631012 43Ga0066709_1031173901 44Ga0066709_1036915322 45Ga0116128_10176392 46Ga0116137_10328802 47Ga0134063_105605482 48Ga0134128_127712421 49Ga0120152_10318463 50Ga0120152_10727443 51Ga0137364_103776642 52Ga0137382_101500962 53Ga0137382_102336292 54Ga0137377_111531703 55Ga0137359_101096353 56Ga0164298_100882943 57Ga0164301_115222332 58Ga0134087_103883141 59Ga0164309_106337582 60Ga0164306_115049162 61Ga0157373_109195623 62Ga0120150_10437773 63Ga0187849_100005844 64Ga0187779_1000013549 65Ga0187778_101559562 66Ga0187778_102261661 67Ga0187776_102314832 68Ga0187780_100205983 69Ga0187815_101538422 70Ga0187885_100050762 71Ga0187765_103520112 72Ga0187765_111668281 73Ga0187773_103954202 74Ga0066667_112759952 75Ga0066667_123460392 76Ga0066662_130216342 77Ga0066669_122222841 78Ga0206356_111234722 79Ga0210382_102615303 80Ga0210402_115754252 81Ga0207932_10361993 82Ga0208849_100065727 83Ga0207699_110577923 84Ga0207693_104162022 85Ga0207660_110293873 86Ga0207646_114604002 87Ga0207664_117457201 88Ga0209238_11292952 89Ga0209055_12912902 90Ga0209807_11949302 91Ga0209156_100331335 92Ga0179593_10272553 93Ga0209421_11172662 94Ga0209166_100907413 95Ga0209579_103225042 96Ga0209415_107756242 97Ga0137415_107109551 98Ga0265326_102504222 99Ga0265319_10094581 100Ga0265319_11396772 101Ga0265322_100070052 102Ga0265338_109488042 103Ga0307305_101112811 104Ga0307310_106174051 105Ga0307501_102096962 106Ga0307469_108145402 107Ga0308175_1000230731 108Ga0307479_102532163 109Ga0307479_109980332 110Ga0307479_116624662 111Ga0308173_104926853 112Ga0335070_100003642 113Ga0335081_102123434 114Ga0335081_116266822 115Ga0335081_118579952 116Ga0334722_100817423 117Ga0310810_102195841 118Ga0310811_100631685 119Ga0314865_207938_394_522
Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64. 1E4A_12190620 2Ga0066674_104274222 3Ga0066683_101573082 4Ga0066675_104975391 5Ga0070680_1013216373 6Ga0070709_107390823 7Ga0070681_106176372 8Ga0070731_105245482 9Ga0066697_107342351 10Ga0070717_108451711 11Ga0134128_127712421 12Ga0207932_10361993 13Ga0209421_11172662 14Ga0265326_102504222 15Ga0307469_108145402 16Ga0307479_116624662 17Ga0335081_118579952
Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46. 1Ga0187815_101538422 2E4A_12190620 3Ga0066674_104274222 4Ga0066672_100797422 5Ga0066672_101586282 6Ga0066678_106944511 7Ga0070708_1017568242 8Ga0070698_1001871253 9Ga0070698_1002106992 10Ga0070731_105245482 11Ga0068853_1004597672 12Ga0066697_107342351 13Ga0066706_103682391 14Ga0075278_10046192 15Ga0099827_108666192 16Ga0099827_113243922 17Ga0137377_111531703 18Ga0164309_106337582 19Ga0164306_115049162 20Ga0187849_100005844 21Ga0187765_103520112 22Ga0187773_103954202 23Ga0066667_112759952 24Ga0210402_115754252 25Ga0208849_100065727 26Ga0265319_10094581 27Ga0265322_100070052 28Ga0307469_108145402 29Ga0307479_109980332 30Ga0335081_118579952 31Ga0334722_100817423 32Ga0310811_100631685
Powered by MSAViewer

Neighboring Clusters of Orthologous Genes (COGs)

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 52.00% β-sheet: 0.00% Coil/Unstructured: 48.00%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
Powered by Feature Viewer

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.68
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.68
Powered by PDBe Molstar

Pfam ID	Name	% Frequency in 119 Family Scaffolds
PF08543	Phos_pyr_kin	40.34
PF00270	DEAD	17.65
PF00085	Thioredoxin	7.56
PF02110	HK	5.04
PF00271	Helicase_C	4.20
PF00586	AIRS	1.68
PF03795	YCII	1.68
PF00698	Acyl_transf_1	0.84
PF07992	Pyr_redox_2	0.84
PF09369	MZB	0.84

COG ID	Name	Functional Category	% Frequency in 119 Family Scaffolds
COG0351	Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase	Coenzyme transport and metabolism [H]	40.34
COG0524	Sugar or nucleoside kinase, ribokinase family	Carbohydrate transport and metabolism [G]	40.34
COG2240	Pyridoxal/pyridoxine/pyridoxamine kinase	Coenzyme transport and metabolism [H]	40.34
COG2870	ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase	Cell wall/membrane/envelope biogenesis [M]	40.34
COG0063	NAD(P)H-hydrate repair enzyme Nnr, NAD(P)H-hydrate dehydratase domain	Nucleotide transport and metabolism [F]	5.04
COG2145	Hydroxyethylthiazole kinase, sugar kinase family	Coenzyme transport and metabolism [H]	5.04
COG2350	YciI superfamily enzyme, includes 5-CHQ dehydrochlorinase, contains active-site pHis	Secondary metabolites biosynthesis, transport and catabolism [Q]	1.68
COG2154	Pterin-4a-carbinolamine dehydratase	Coenzyme transport and metabolism [H]	0.84

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	74.79 %
Unclassified	root	N/A	25.21 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	74.79 %
Unclassified	root	N/A	25.21 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	74.79 %
Unclassified	root	N/A	25.21 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	50.42 %
Unclassified	root	N/A	25.21 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	49.58 %
Unclassified	root	N/A	25.21 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	34.45 %
Unclassified	root	N/A	25.21 %

Name	Rank	Taxonomy	Distribution
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	5.04 %
Unclassified	root	N/A	25.21 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	27.73 %

Name	Rank	Taxonomy	Distribution
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	5.04 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	27.73 %
Unclassified	root	N/A	25.21 %

Scaffold	Taxonomy	Length	IMG/M Link
2170459003\|FZ032L002JV8ID	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	504	Open in IMG/M
3300005166\|Ga0066674_10427422	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	609	Open in IMG/M
3300005167\|Ga0066672_10079742	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1956	Open in IMG/M
3300005167\|Ga0066672_10158628	Not Available	1423	Open in IMG/M
3300005172\|Ga0066683_10157308	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1397	Open in IMG/M
3300005175\|Ga0066673_10341558	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	874	Open in IMG/M
3300005176\|Ga0066679_10149147	All Organisms → cellular organisms → Bacteria	1463	Open in IMG/M
3300005179\|Ga0066684_10056915	All Organisms → cellular organisms → Bacteria	2265	Open in IMG/M
3300005179\|Ga0066684_10107775	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1717	Open in IMG/M
3300005179\|Ga0066684_10498767	All Organisms → cellular organisms → Bacteria	817	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	94.12%
Host-Associated	Host-Associated	5.88%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	5.88%
Plants	Host-Associated → Plants	5.88%
Terrestrial	Environmental → Terrestrial	88.24%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	5.88%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.84%
Rhizosphere	Host-Associated → Plants → Rhizosphere	5.04%
Soil	Environmental → Terrestrial → Soil	88.24%

Habitat	Taxonomy	Distribution
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.84%
Lake	Environmental → Aquatic → Freshwater → Lake	0.84%
Loam	Environmental → Terrestrial → Soil → Loam	16.81%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.84%
Soil	Host-Associated → Plants → Rhizosphere → Soil	4.20%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	59.66%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.84%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	11.76%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	4.20%

Habitat	Taxonomy	Distribution
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.68%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	15.13%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	1.68%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	4.20%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.84%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	26.89%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.84%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	4.20%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	0.84%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.84%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	22.69%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	11.76%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	4.20%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	1.68%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.84%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.84%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.84%

Habitat	Taxonomy	Distribution
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.84%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	1.68%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	2.52%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.84%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.84%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	11.76%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.84%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.84%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.84%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.84%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	6.72%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.68%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.84%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.36%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	1.68%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	1.68%
Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland	0.84%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.84%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	2.52%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	4.20%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	0.84%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	0.84%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	19.33%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	7.56%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	3.36%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.68%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.84%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.84%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	3.36%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.84%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	6.72%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	7.56%

Visualization
Download SVG Download PNG Download CSV
Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459003	Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect MP BIO 1O1 lysis 0-21cm	Environmental	Open in IMG/M
3300005166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005175	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122	Environmental	Open in IMG/M
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M

Showing 1 to 10 of 97 entries

Previous1 2 3 4 5…10Next

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
E4A_12190620	2170459003	Grass Soil	VRVFGLLALPGIWQTASLLRGSPAVTAVFTLGAALLGVWAIAVLREE
Ga0066674_104274222	3300005166	Soil	MVQVRILMLLALLGIWKAASSVLEASLAVTALITLGAAVLGAWAIAVLREG*
Ga0066672_100797422	3300005167	Soil	MGEVRILMLLALVGIWQATSSILEAPLAVTALVTLGAAALGAWAIAVLREG*
Ga0066672_101586282	3300005167	Soil	MGQVRILMLLALLGIWETASSVLRAPLAVTALVTLGAAVLGAWAIAVLREE*
Ga0066683_101573082	3300005172	Soil	VRLLASLGLVGIWHAAAVLGGPLAVTAAFTLGAAALGAWAIAVLRET*
Ga0066673_103415583	3300005175	Soil	QVRVFGLLALPGIWQTASLLHGSPAVTAAFTLGAALLGVWAIAVIREE*
Ga0066679_101491471	3300005176	Soil	MLLALLGIWETASSVLRASLAVTALVTLGAAVLGAWAIAVLREE*
Ga0066684_100569154	3300005179	Soil	MGQVRILMLLAALGIWETASSVLQAPLAVTALVTLGAAALGAWAIAVLREG*
Ga0066684_101077752	3300005179	Soil	VSSGRLSIIRQVRVFGLLALPGIWQTASLLHGSPAVTAAFTLGAALLGVWAIAVIREE*
Ga0066684_104987671	3300005179	Soil	SPSWGEVRILMLLALVGIWQATSSILEAPLAVTALVTLGAAALGAWAIAVLREG*
Ga0066678_106944511	3300005181	Soil	MGRMRILMLLALLGIWETASTVLEAPLAVTALITLGAAVLGAWAIAVLREG*
Ga0066675_104975391	3300005187	Soil	MLLALVGIWQATSSILEAPLAVTALVTLGAAALGAWAIAVLREG*
Ga0070680_1013216373	3300005336	Corn Rhizosphere	DRGSPVPSGSRPMMGQVRIVMLLALLGIWKAAASLLGAPLAVTALVTLGAAALGAWALAVLREG*
Ga0070709_107390823	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	VRIVVLLGLLGIWQAASSLLAAPLVVTALVTVGAAALGAWAIAVLRTG*
Ga0070708_1007598163	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	VWVRALGLLALPGIWQTASLLHGSPAVTAVFTLGATLLGVWAIVVLGEG*
Ga0070708_1017568242	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MIRQVRALGLLALPGIWQTASLLHGSPAVTAAFTLGATLLGIWAIAVLREQ*
Ga0066689_109690791	3300005447	Soil	VRILALLALLGIWETASSLLRAPLAVTALLTLGAAVLGAWAIAVLREE*
Ga0066682_107249101	3300005450	Soil	EVRILMLLALVGIWQATSSILEAPLAVTALVTLGAAALGAWAIAVLREG*
Ga0070681_106176372	3300005458	Corn Rhizosphere	MRLLGLLGLVGIWQAAGALFPASVAAAALFTLGAALLGAWAIAVLRE*
Ga0070707_1013488482	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	LGLLALPGIWQTASLLHGSPAVTAAFTLGAALLGIWAIAVLRED*
Ga0070698_1001871253	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	VRVLGLLALPGIWETASLLHGSLVVTALFTLGAAALGVWAFAALREQ*
Ga0070698_1002106992	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	VWVRALGLLALPGIWQTASLLHGSPAVTAVFTLGAALLGVWAIVVLREG*
Ga0070698_1009059352	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	VRALGLLALPGIWETASLLHGSLVVTALFTLGAAALGVWAFAALREQ*
Ga0070699_1003116043	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	LGLLALPGIWQTASRLRGSPAVTAAFTLGAALLGIWAIAVLRED*
Ga0070699_1007248453	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MWQVRILMLLALLGIWEAASSVLQASVAVTALVTLGAAALGAWAIAVLREG*
Ga0070730_100516743	3300005537	Surface Soil	VRTLGLLALPGIWQTATLLHGSPAVTAVFTLGAALLGVWAIAVLREG*
Ga0070731_105245482	3300005538	Surface Soil	VRLLGLLALPGIWEAAALLRGSTLVTALCTLGAAALGLWALAVLRELQ*
Ga0068853_1004597672	3300005539	Corn Rhizosphere	MRLLGLLGLVGIWQAAGALFPASVAAAAFFTLGAALLGAWAIAVLRE*
Ga0066697_107342351	3300005540	Soil	MGRVRILMLLALLGIWETTSSIFEAPLAVTALVPLGAAALGAWAIAVLR
Ga0066691_101184432	3300005586	Soil	MLLALLGIWETASSVLRAPLAVTALVTLGAAVLGAWAIAVLREE*
Ga0066706_103682391	3300005598	Soil	LTGVRLLASLGLVGIWHAAAGLGGPLAVTAAFTLGAAALGAWAIAVLRET*
Ga0075278_10046192	3300005893	Rice Paddy Soil	VRLLGLVGLVGIWQATDALLRSSVLVTALLTLGAALLGAWAIAVLRE*
Ga0070717_101506944	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	VRALGLLALPGIWQTASLLHGSPAVTAAFTLGATLLGIWAIAVLREQ*
Ga0070717_108451711	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	PGIWETASLLHGSLVVTALFTLGAAALGVWAFAALREQ*
Ga0066658_101950522	3300006794	Soil	MEQVRILMLLALLGIWETASSVLRAPLAVTALVTLGAAVLGAWAIAVLREE*
Ga0066665_116086102	3300006796	Soil	MGRVRILMLLALLGIWETASSVLEAPLAVTALITLGAAALGAWAIAVLREG*
Ga0066659_108436132	3300006797	Soil	MGQVRILMLLALLGIWETASSVLRAPLAVTALVTLGAAALGAWAIAVLREG*
Ga0066659_114944882	3300006797	Soil	MVQVRILMLLALLGISKAASSVLEASLAVTALITLGAAALGAWAIAVLREG*
Ga0066660_105228722	3300006800	Soil	MGEVRILMLLALLGIWETASSVLRAPLAVTALVTLGAAVLGAWAIAVLREE*
Ga0099827_108666192	3300009090	Vadose Zone Soil	VRILALLALLGIWEAASSLLRAPLVVTALFTLGAALLGAWAIAVLREE*
Ga0099827_113243922	3300009090	Vadose Zone Soil	VRVFGLLALPGIWQTATLLHGSPAVTAAFTLGAAVLGVWAIAVLREQ*
Ga0066709_1001631012	3300009137	Grasslands Soil	VRLLASLGLVGIWHAAAGLGGPLAVTAAFTLGAAALGAWAIAVLRET*
Ga0066709_1031173901	3300009137	Grasslands Soil	MGQMRILMLLALLGIWETASTVLEAPLAVTALITLGAAVLGAWAIAVLREG*
Ga0066709_1036915322	3300009137	Grasslands Soil	VSSGRLSIIYQVRVFGLLALPGIWQTASLLHGSPAVTAAFTLGAALLGVWAIAVIREE*
Ga0116128_10176392	3300009518	Peatland	VRALALLALPGIWQTASLLHGSTVVTALFTLGVALLGLWAIAVLREE*
Ga0116137_10328802	3300009549	Peatland	ALLALPGIWQTASLLHGSTVVTALFTLGVALLGLWAIAVLREE*
Ga0134063_105605482	3300010335	Grasslands Soil	MGEVRILMLLALLGIWEAASSVLRAPLAVTALVTLGAAALGAWAIAVLREG*
Ga0134128_127712421	3300010373	Terrestrial Soil	MGQVRILMLLALLGIWEAASSVLKASVAVTALITLGAAAL
Ga0120152_10318463	3300012011	Permafrost	MGQVRILMLLALLGIWEAASSVLNASLTVTALITLGAAALGAWAIAVLREG*
Ga0120152_10727443	3300012011	Permafrost	VRILALLALLGIWETASSVLRAPLVVTALFTLGAALLGAWAIAVLREE*
Ga0137364_103776642	3300012198	Vadose Zone Soil	MVQVRILMLLALLGIWKAASSVLEASLAVTALITLGAAALGAWAIAVLREG*
Ga0137382_101500962	3300012200	Vadose Zone Soil	MERVRILMLLALLGIWETASSVLEAPLAVTALITLGAAVLGAWAIAVLREG*
Ga0137382_102336292	3300012200	Vadose Zone Soil	MGRVRIVMLLALMGIWQATSSILEAPLAVTALVTLGAAALGAWAIAVLREG*
Ga0137377_111531703	3300012211	Vadose Zone Soil	MGQVRILILLALLGIWEATSSVLEAPLAVTALITLGAAALGAWAIAVLREG*
Ga0137359_101096353	3300012923	Vadose Zone Soil	VSSDYPPIIGQVRVFGLLALPGIWQTASLLHGSPAVTAVFTLGAALLGVWAIAVLREQ*
Ga0164298_100882943	3300012955	Soil	VRIVVLLGLLGIWQAASSLLAAPLVVTALVTIGAAALGAWAIAVFRTG*
Ga0164301_115222332	3300012960	Soil	MGQVRILMLLALLGIWEAASSVLKGSLAVTALITLGAAALGAWAIAVLREG*
Ga0134087_103883141	3300012977	Grasslands Soil	MLLALVGIWQATSSILEAPLAVTALVTLGAAALAAWAIAVLREG*
Ga0164309_106337582	3300012984	Soil	MWQVRILMLLALLGIWEAASSVLKASVAVTALVTLGAAALGAWAIAVLREG*
Ga0164306_115049162	3300012988	Soil	VRIVVLLGLLGIWQAASSLLAAPLVVTALVTIGAAALGAWAIAVLRTG*
Ga0157373_109195623	3300013100	Corn Rhizosphere	LGLLGLVGIWQAAGALFPASVAAAALFTLGAALLGAWAIAVLRE*
Ga0120150_10437773	3300013294	Permafrost	MGQVRILILLALLGIWEAASSVLKASLAVTALITLGAAALGAWAIAVLREG*
Ga0187849_100005844	3300017929	Peatland	VRALALLALPGIWQTASLLHGSTVVTALFTLGVALLGLWAIAVLREE
Ga0187779_1000013549	3300017959	Tropical Peatland	VRFLGLLALPGLWETASLLHGSLVVTALFTLGAALLGAWAIAVLREE
Ga0187778_101559562	3300017961	Tropical Peatland	VRFLGLLALPGIWETASLLHRSPAVTALFTLGAALLGAWAIAVLREG
Ga0187778_102261661	3300017961	Tropical Peatland	VLLALPGIWETASLLHGSVAVTAVFTLGAALLGAWAIAVLREG
Ga0187776_102314832	3300017966	Tropical Peatland	VRFFGLLALPGIWETASLLHGSVAVTALFTLGAALLGAWAIAVLREE
Ga0187780_100205983	3300017973	Tropical Peatland	VRFLGLLALPGIWETASLLHGSPAVTALFTLGAALLGAWAIAVLREG
Ga0187815_101538422	3300018001	Freshwater Sediment	VRFLGLLALPGIWETASLLHGSLAVTALFTLGAALLGAWAIAVLREE
Ga0187885_100050762	3300018025	Peatland	VRALALLGLPGIWQTASLLHGSTVVTALFTLGATLLGLWAIAVLREE
Ga0187765_103520112	3300018060	Tropical Peatland	VRFLALLALPGIWQAASLLHGSVAVTAVFTLGAALLGAWAIAVLREE
Ga0187765_111668281	3300018060	Tropical Peatland	VRFLALLALPGIWQAASLLHGSVAVTALFTLGAALLGAWAIAVLREE
Ga0187773_103954202	3300018064	Tropical Peatland	VQVRFLSLLALPGIWQTASLLRGSVAVTALFTLGAALLGMWALAVLRER
Ga0066667_112759952	3300018433	Grasslands Soil	MGEVRILMLLALVGIWQAASSLLEAPLAITALVTLAAAVLGAWAIAVLREG
Ga0066667_123460392	3300018433	Grasslands Soil	MLLALLGIWETASSVLRAPLAVTALVTLGAAVLGAWAIAVLREE
Ga0066662_130216342	3300018468	Grasslands Soil	MGEVRILMLLALVGIWQATSSILEAPLAVTALVTLGAAALGAWAIAVQREG
Ga0066669_122222841	3300018482	Grasslands Soil	MLLALVGIWQATSSILEAPLAVTALVTLGAAALGAWAIAVLREG
Ga0206356_111234722	3300020070	Corn, Switchgrass And Miscanthus Rhizosphere	MRLLGLLGLVGIWQAAGALFPASVAAAALFTLGAALLGAWAIAVLRE
Ga0210382_102615303	3300021080	Groundwater Sediment	MVQVRILMLLALLGIWKAASSVLEASLAVTALITLGAAALGAWAIAVLREG
Ga0210402_115754252	3300021478	Soil	VRLLASLGLVGIWQTASLLHGPPLVTAALTLGAAALAAWAIAVLRDE
Ga0207932_10361993	3300025495	Arctic Peat Soil	VRLLALLALPGIWQTASLLRGSVAVTAAFTGGAALLGAWALAV
Ga0208849_100065727	3300025664	Arctic Peat Soil	VRLLGLLALPGIWQTATLLRGSVAVTALFTLGAALLGAWALAVLREE
Ga0207699_110577923	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	VRIVVLLGLLGIWQAASSLLAAPLVVTALVTIGAAALGAWAIAVLRTG
Ga0207693_104162022	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	VRIVVLLGLLGIWQAASSLLAAPLVVTALVTIGAAALGAWAIAVLREG
Ga0207660_110293873	3300025917	Corn Rhizosphere	MMGQVRIVMLLALLGIWKAAASLLGAPLAVTALVTLGAAALGAWALAVLREG
Ga0207646_114604002	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	VWVRALGLLALPGIWQTASLLHGSPAVTAVFTLGATLLGVWAIVVLREG
Ga0207664_117457201	3300025929	Agricultural Soil	VLLGLLGIWQAASSLLAAPLVVTALVTVGAAALGAWAIAVLRTG
Ga0209238_11292952	3300026301	Grasslands Soil	VRILMLLALLGIWETASSVLRAPLAVTALVTLGAAVLGAWAIAVLREE
Ga0209055_12912902	3300026309	Soil	MGEVRILMLLALVGIWQATSSILEAPLAVTALVTLGAAALGAWAIAVLREG
Ga0209807_11949302	3300026530	Soil	MGEVRILMLLALVGIWQATSSILEAPLAVTALVTLGAAVLGAWAIAVLREE
Ga0209156_100331335	3300026547	Soil	MGQVRILMLLALLGIWETASSVLRAPLAVTALVTLGAAVLGA
Ga0179593_10272553	3300026555	Vadose Zone Soil	MGQVRILMLLALLGIWEAASSVLKASPAVTALITLGAAALGAWAIAVLREG
Ga0209421_11172662	3300027432	Forest Soil	MIEEVRFVGLATLPGIWETASLLRGSFAVTGTLTICAALLGV
Ga0209166_100907413	3300027857	Surface Soil	VRTLGLLALPGIWQTATLLHGSPAVTAVFTLGAALLGVWAIAVLREG
Ga0209579_103225042	3300027869	Surface Soil	VRLLGLLALPGIWEAAALLRGSTLVTALCTLGAAALGLWALAVLRELQ
Ga0209415_107756242	3300027905	Peatlands Soil	VRFLGLLALPGIWETASLLHGSLAVTALFTLGAALLGVWAIAVLREE
Ga0137415_107109551	3300028536	Vadose Zone Soil	MGQVRILMLLALLGIWEAASSVLKASPAVTALITLGAAALGAW
Ga0265326_102504222	3300028558	Rhizosphere	VRFAGLATLPGIWETASLLRGSFVVTGTLTLCAALLGVWALAVLR
Ga0265319_10094581	3300028563	Rhizosphere	MIGQVRFAGLATLPGIWETASLLRGSFAVTGTLTLCAALLGVWAIAVLREG
Ga0265319_11396772	3300028563	Rhizosphere	VRFAGLATLPGIWETASLLRGSFVVTGTLTLCAALLGVWALAVLREG
Ga0265322_100070052	3300028654	Rhizosphere	MIGEVRLLALLALPGIWETASLLRGSVAVTAAFTLGAALLGVWAIAVLREE
Ga0265338_109488042	3300028800	Rhizosphere	EVRLLALLALPGIWQTASLLRGSISVTAAFTLGAALLGVWAIAVLREG
Ga0307305_101112811	3300028807	Soil	VRILTLLALLGIWKAASSVLEASLAVTALITLGAAALGAWAIAVLREG
Ga0307310_106174051	3300028824	Soil	MGQVRILMFLALLGIWEAASSVLEASLAVTALITLGAAALGAWAIAVLREG
Ga0307501_102096962	3300031152	Soil	MGRVRILMLLALLGIWETASSVLEAPLAVTALITLGAAALGAWAIAVLREG
Ga0307469_108145402	3300031720	Hardwood Forest Soil	VLLVALVGLVGIWQTASLLHGSLLVTAVFTLGAAALGLWAVTVLRDE
Ga0308175_1000230731	3300031938	Soil	GSRPIMGQVRIVMLLALLGIWKAAASLLGAPLAVTALVTLGAAALGAWALAVLREG
Ga0307479_102532163	3300031962	Hardwood Forest Soil	VRALGLLALPGIWETASLLHGSLVVTALFTLGAAALGVWAFAALREQ
Ga0307479_109980332	3300031962	Hardwood Forest Soil	VRVLGLLALPGIWQTASLLHGPVVVTVLFTLGAAALGGWAFAVLREE
Ga0307479_116624662	3300031962	Hardwood Forest Soil	VSSDYPPIIRQVRALGLVALPGIWQTASLLHGSPAVTAVFTLGAALLGVWALAVIRE
Ga0308173_104926853	3300032074	Soil	MIGQVRVVMLLGLLGIWEAASSLLAAPLAVTALVTLGAAALGAWALAVLREG
Ga0335070_100003642	3300032829	Soil	VRFLGLLALPGIWQTASLLHGSVAVTALFTLGAALLGAWAIAVLREE
Ga0335081_102123434	3300032892	Soil	VEVRLLGLLALPGIWQTASLLQGSVAVTALFTLGAALLGAWAIAVLREQ
Ga0335081_116266822	3300032892	Soil	VRFLGLLALPGIWETASLLHGSVAVTALFTLGAALLGAWAIAVLREE
Ga0335081_118579952	3300032892	Soil	ALPALAGIWETASLLHGSVAVTAAFTLGAALLGAWAIAVLREQ
Ga0334722_100817423	3300033233	Sediment	MFGLIALPGIWQTASLLHGSPAVTAVFTLGAAALGVWAIAVLHEQ
Ga0310810_102195841	3300033412	Soil	DRGGPVPSGSRPIMGQVRIVMLLALLGIWKAAASLLGAPLAVTALVTLGAAALGAWALAVLREG
Ga0310811_100631685	3300033475	Soil	MGQVRIVMLLALLGIWKAAASLLGAPLAVTALVTLGAAALGAWALAVLREG
Ga0314865_207938_394_522	3300033806	Peatland	LLALPGIWESASLLRGSIAVTALFTLGAALLGAWAIAVLREG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F074676

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences