Metagenome / Metatranscriptome Family F074623

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F074623
Family Type	Metagenome / Metatranscriptome
Number of Sequences	119
Average Sequence Length	84 residues
Representative Sequence	LVDRGADLAVKDKGEDYGFGVSSVRMTPLNWAEGVPIGMSSAIYHDETVVLMTRLMKERGIPVVYNTFQGQKQGDAPIIETPK
Number of Associated Samples	100
Number of Associated Scaffolds	119

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	2.52 %
% of genes near scaffold ends (potentially truncated)	98.32 %
% of genes from short scaffolds (< 2000 bps)	93.28 %
Associated GOLD sequencing projects	95
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.34

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (96.639 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (11.765 % of family members)
Environment Ontology (ENVO)	Unclassified (31.092 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (49.580 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 14.41% β-sheet: 0.00% Coil/Unstructured: 85.59%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.34
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.34
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 119 Family Scaffolds
PF04909	Amidohydro_2	5.88
PF13519	VWA_2	5.88
PF00106	adh_short	2.52
PF13620	CarboxypepD_reg	2.52
PF00144	Beta-lactamase	2.52
PF13637	Ank_4	1.68
PF13531	SBP_bac_11	1.68
PF02558	ApbA	0.84
PF07637	PSD5	0.84
PF03162	Y_phosphatase2	0.84
PF01176	eIF-1a	0.84
PF01799	Fer2_2	0.84
PF02452	PemK_toxin	0.84
PF10099	RskA	0.84
PF02776	TPP_enzyme_N	0.84
PF02730	AFOR_N	0.84
PF01011	PQQ	0.84
PF01850	PIN	0.84
PF13360	PQQ_2	0.84
PF01636	APH	0.84
PF12680	SnoaL_2	0.84
PF03551	PadR	0.84
PF00023	Ank	0.84
PF07631	PSD4	0.84
PF13616	Rotamase_3	0.84
PF03743	TrbI	0.84

COG ID	Name	Functional Category	% Frequency in 119 Family Scaffolds
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	2.52
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	2.52
COG2367	Beta-lactamase class A	Defense mechanisms [V]	2.52
COG0361	Translation initiation factor IF-1	Translation, ribosomal structure and biogenesis [J]	0.84
COG1695	DNA-binding transcriptional regulator, PadR family	Transcription [K]	0.84
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	0.84
COG1846	DNA-binding transcriptional regulator, MarR family	Transcription [K]	0.84
COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	Defense mechanisms [V]	0.84
COG2365	Protein tyrosine/serine phosphatase Oca4	Signal transduction mechanisms [T]	0.84
COG2414	Aldehyde:ferredoxin oxidoreductase	Energy production and conversion [C]	0.84
COG2948	Type IV secretory pathway, VirB10 component	Intracellular trafficking, secretion, and vesicular transport [U]	0.84

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	96.64 %
Unclassified	root	N/A	3.36 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	96.64 %
Unclassified	root	N/A	3.36 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	96.64 %
Unclassified	root	N/A	3.36 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	72.27 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	3.36 %
Unclassified	root	N/A	3.36 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	12.61 %
Unclassified	root	N/A	3.36 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	1.68 %
Blastocatellia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia	0.84 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.84 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	12.61 %
Unclassified	root	N/A	3.36 %
unclassified Terriglobia	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia	0.84 %
Blastocatellales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales	0.84 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	0.84 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.84 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	12.61 %
Unclassified	root	N/A	3.36 %
Acidobacteriia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium	0.84 %
Pyrinomonadaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae	0.84 %
Solibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	0.84 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.84 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	12.61 %
Unclassified	root	N/A	3.36 %
unclassified Pyrinomonadaceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae	0.84 %
Candidatus Sulfopaludibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter	0.84 %
Acidobacteriia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium	0.84 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.84 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	12.61 %
Unclassified	root	N/A	3.36 %
unclassified Candidatus Sulfopaludibacter	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter	0.84 %
Pyrinomonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	0.84 %
Acidobacteriia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium	0.84 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.84 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	12.61 %
Unclassified	root	N/A	3.36 %
Candidatus Sulfopaludibacter sp. SbA4	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4	0.84 %
Pyrinomonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	0.84 %
Acidobacteriia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium	0.84 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.84 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000559\|F14TC_100948200	All Organisms → cellular organisms → Bacteria	1112	Open in IMG/M
3300000559\|F14TC_108274219	All Organisms → cellular organisms → Bacteria → Acidobacteria	628	Open in IMG/M
3300000789\|JGI1027J11758_11305798	All Organisms → cellular organisms → Bacteria → Acidobacteria	554	Open in IMG/M
3300000789\|JGI1027J11758_11984827	All Organisms → cellular organisms → Bacteria → Acidobacteria	561	Open in IMG/M
3300000789\|JGI1027J11758_12304895	All Organisms → cellular organisms → Bacteria → Acidobacteria	595	Open in IMG/M
3300000793\|AF_2010_repII_A001DRAFT_10067133	All Organisms → cellular organisms → Bacteria → Acidobacteria	779	Open in IMG/M
3300000955\|JGI1027J12803_104117788	All Organisms → cellular organisms → Bacteria → Acidobacteria	672	Open in IMG/M
3300000955\|JGI1027J12803_108920205	All Organisms → cellular organisms → Bacteria	729	Open in IMG/M
3300002245\|JGIcombinedJ26739_101363618	All Organisms → cellular organisms → Bacteria → Acidobacteria	601	Open in IMG/M
3300003324\|soilH2_10174189	All Organisms → cellular organisms → Bacteria	1387	Open in IMG/M
3300004799\|Ga0058863_11518055	All Organisms → cellular organisms → Bacteria	826	Open in IMG/M
3300005172\|Ga0066683_10353118	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	912	Open in IMG/M
3300005181\|Ga0066678_10318910	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1021	Open in IMG/M
3300005332\|Ga0066388_107764018	All Organisms → cellular organisms → Bacteria → Acidobacteria	537	Open in IMG/M
3300005339\|Ga0070660_100651978	All Organisms → cellular organisms → Bacteria	882	Open in IMG/M
3300005340\|Ga0070689_101960333	Not Available	535	Open in IMG/M
3300005440\|Ga0070705_101850494	All Organisms → cellular organisms → Bacteria → Acidobacteria	513	Open in IMG/M
3300005446\|Ga0066686_10435775	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	895	Open in IMG/M
3300005446\|Ga0066686_10785666	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	635	Open in IMG/M
3300005535\|Ga0070684_101009957	All Organisms → cellular organisms → Bacteria → Acidobacteria	781	Open in IMG/M
3300005538\|Ga0070731_10083117	All Organisms → cellular organisms → Bacteria → Proteobacteria	2123	Open in IMG/M
3300005538\|Ga0070731_11022596	All Organisms → cellular organisms → Bacteria → Acidobacteria	547	Open in IMG/M
3300005564\|Ga0070664_101050885	All Organisms → cellular organisms → Bacteria → Acidobacteria	766	Open in IMG/M
3300005614\|Ga0068856_100290248	Not Available	1652	Open in IMG/M
3300005618\|Ga0068864_100540025	All Organisms → cellular organisms → Bacteria	1126	Open in IMG/M
3300005719\|Ga0068861_102440307	All Organisms → cellular organisms → Bacteria	526	Open in IMG/M
3300005764\|Ga0066903_100383531	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2299	Open in IMG/M
3300005764\|Ga0066903_105247640	Not Available	685	Open in IMG/M
3300005840\|Ga0068870_11248770	All Organisms → cellular organisms → Bacteria → Acidobacteria	539	Open in IMG/M
3300005937\|Ga0081455_11045461	All Organisms → cellular organisms → Bacteria → Acidobacteria	505	Open in IMG/M
3300006796\|Ga0066665_11512619	All Organisms → cellular organisms → Bacteria → Acidobacteria	524	Open in IMG/M
3300006797\|Ga0066659_10374575	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1112	Open in IMG/M
3300006797\|Ga0066659_10640329	All Organisms → cellular organisms → Bacteria → Acidobacteria	865	Open in IMG/M
3300006845\|Ga0075421_101337120	All Organisms → cellular organisms → Bacteria → Acidobacteria	792	Open in IMG/M
3300006845\|Ga0075421_101538450	All Organisms → cellular organisms → Bacteria	726	Open in IMG/M
3300006847\|Ga0075431_101348474	All Organisms → cellular organisms → Bacteria → Acidobacteria	674	Open in IMG/M
3300006852\|Ga0075433_11900184	All Organisms → cellular organisms → Bacteria	511	Open in IMG/M
3300006904\|Ga0075424_102439445	All Organisms → cellular organisms → Bacteria → Acidobacteria	548	Open in IMG/M
3300007076\|Ga0075435_101304495	All Organisms → cellular organisms → Bacteria → Acidobacteria	636	Open in IMG/M
3300007076\|Ga0075435_101364619	All Organisms → cellular organisms → Bacteria → Acidobacteria	621	Open in IMG/M
3300009100\|Ga0075418_12469569	All Organisms → cellular organisms → Bacteria → Acidobacteria	567	Open in IMG/M
3300009147\|Ga0114129_11765421	All Organisms → cellular organisms → Bacteria → Acidobacteria	753	Open in IMG/M
3300009147\|Ga0114129_12092410	All Organisms → cellular organisms → Bacteria → Acidobacteria	683	Open in IMG/M
3300009156\|Ga0111538_13439696	All Organisms → cellular organisms → Bacteria → Acidobacteria	550	Open in IMG/M
3300009156\|Ga0111538_13613755	All Organisms → cellular organisms → Bacteria	536	Open in IMG/M
3300009162\|Ga0075423_11895801	All Organisms → cellular organisms → Bacteria → Acidobacteria	644	Open in IMG/M
3300009545\|Ga0105237_10619960	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1089	Open in IMG/M
3300009553\|Ga0105249_12676721	All Organisms → cellular organisms → Bacteria → Acidobacteria	571	Open in IMG/M
3300009792\|Ga0126374_10272864	All Organisms → cellular organisms → Bacteria	1118	Open in IMG/M
3300010320\|Ga0134109_10309283	All Organisms → cellular organisms → Bacteria → Acidobacteria	610	Open in IMG/M
3300010358\|Ga0126370_12486539	All Organisms → cellular organisms → Bacteria → Acidobacteria	516	Open in IMG/M
3300010362\|Ga0126377_10590795	All Organisms → cellular organisms → Bacteria	1154	Open in IMG/M
3300010362\|Ga0126377_11175603	All Organisms → cellular organisms → Bacteria	837	Open in IMG/M
3300010362\|Ga0126377_12285659	All Organisms → cellular organisms → Bacteria → Acidobacteria	617	Open in IMG/M
3300010366\|Ga0126379_10047485	All Organisms → cellular organisms → Bacteria	3510	Open in IMG/M
3300010397\|Ga0134124_10091670	All Organisms → cellular organisms → Bacteria	2629	Open in IMG/M
3300010398\|Ga0126383_11272084	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4	826	Open in IMG/M
3300010400\|Ga0134122_12017284	All Organisms → cellular organisms → Bacteria → Acidobacteria	616	Open in IMG/M
3300010866\|Ga0126344_1102998	All Organisms → cellular organisms → Bacteria → Acidobacteria	795	Open in IMG/M
3300011120\|Ga0150983_13020151	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	579	Open in IMG/M
3300011271\|Ga0137393_10862374	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	773	Open in IMG/M
3300011409\|Ga0137323_1027445	All Organisms → cellular organisms → Bacteria → Acidobacteria	1263	Open in IMG/M
3300011441\|Ga0137452_1237524	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	616	Open in IMG/M
3300012205\|Ga0137362_11041454	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium	696	Open in IMG/M
3300012210\|Ga0137378_10428939	All Organisms → cellular organisms → Bacteria → Acidobacteria	1225	Open in IMG/M
3300012212\|Ga0150985_114634796	Not Available	658	Open in IMG/M
3300012357\|Ga0137384_10900667	All Organisms → cellular organisms → Bacteria → Acidobacteria	713	Open in IMG/M
3300012392\|Ga0134043_1202045	All Organisms → cellular organisms → Bacteria → Acidobacteria	511	Open in IMG/M
3300012905\|Ga0157296_10318181	All Organisms → cellular organisms → Bacteria	551	Open in IMG/M
3300012948\|Ga0126375_10622430	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	828	Open in IMG/M
3300012971\|Ga0126369_10900907	All Organisms → cellular organisms → Bacteria	970	Open in IMG/M
3300012971\|Ga0126369_12750800	All Organisms → cellular organisms → Bacteria → Acidobacteria	576	Open in IMG/M
3300013100\|Ga0157373_11337826	All Organisms → cellular organisms → Bacteria → Acidobacteria	543	Open in IMG/M
3300013306\|Ga0163162_10517666	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1323	Open in IMG/M
3300013306\|Ga0163162_12262223	All Organisms → cellular organisms → Bacteria → Acidobacteria	624	Open in IMG/M
3300014169\|Ga0181531_10622311	All Organisms → cellular organisms → Bacteria → Acidobacteria	670	Open in IMG/M
3300014326\|Ga0157380_10681424	All Organisms → cellular organisms → Bacteria → Acidobacteria	1030	Open in IMG/M
3300014326\|Ga0157380_13423959	All Organisms → cellular organisms → Bacteria → Acidobacteria	508	Open in IMG/M
3300014968\|Ga0157379_11819934	All Organisms → cellular organisms → Bacteria → Acidobacteria	599	Open in IMG/M
3300014969\|Ga0157376_11290932	All Organisms → cellular organisms → Bacteria → Acidobacteria	760	Open in IMG/M
3300015359\|Ga0134085_10058644	All Organisms → cellular organisms → Bacteria	1550	Open in IMG/M
3300015359\|Ga0134085_10192996	All Organisms → cellular organisms → Bacteria → Acidobacteria	875	Open in IMG/M
3300015371\|Ga0132258_10943408	All Organisms → cellular organisms → Bacteria → Acidobacteria	2179	Open in IMG/M
3300015373\|Ga0132257_101064807	All Organisms → cellular organisms → Bacteria → Acidobacteria	1019	Open in IMG/M
3300017659\|Ga0134083_10504636	All Organisms → cellular organisms → Bacteria → Acidobacteria	542	Open in IMG/M
3300017961\|Ga0187778_10836480	All Organisms → cellular organisms → Bacteria → Acidobacteria	629	Open in IMG/M
3300018026\|Ga0187857_10217844	All Organisms → cellular organisms → Bacteria	886	Open in IMG/M
3300018047\|Ga0187859_10903100	All Organisms → cellular organisms → Bacteria → Acidobacteria	509	Open in IMG/M
3300018089\|Ga0187774_11270368	All Organisms → cellular organisms → Bacteria → Acidobacteria	532	Open in IMG/M
3300021170\|Ga0210400_10219221	All Organisms → cellular organisms → Bacteria → Proteobacteria	1550	Open in IMG/M
3300021181\|Ga0210388_10922757	All Organisms → cellular organisms → Bacteria	752	Open in IMG/M
3300021432\|Ga0210384_11398970	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	605	Open in IMG/M
3300021475\|Ga0210392_11298183	All Organisms → cellular organisms → Bacteria → Acidobacteria	545	Open in IMG/M
3300021559\|Ga0210409_11529173	All Organisms → cellular organisms → Bacteria → Acidobacteria	543	Open in IMG/M
3300021560\|Ga0126371_10700528	All Organisms → cellular organisms → Bacteria → Acidobacteria	1161	Open in IMG/M
3300025906\|Ga0207699_10381691	All Organisms → cellular organisms → Bacteria → Acidobacteria	1000	Open in IMG/M
3300025930\|Ga0207701_10122724	All Organisms → cellular organisms → Bacteria	2313	Open in IMG/M
3300025941\|Ga0207711_10203539	All Organisms → cellular organisms → Bacteria	1807	Open in IMG/M
3300025941\|Ga0207711_11567366	All Organisms → cellular organisms → Bacteria → Acidobacteria	602	Open in IMG/M
3300025949\|Ga0207667_10335599	All Organisms → cellular organisms → Bacteria	1543	Open in IMG/M
3300025961\|Ga0207712_11348994	All Organisms → cellular organisms → Bacteria → Acidobacteria	638	Open in IMG/M
3300025986\|Ga0207658_11380336	All Organisms → cellular organisms → Bacteria → Acidobacteria	644	Open in IMG/M
3300026078\|Ga0207702_10821853	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	919	Open in IMG/M
3300026089\|Ga0207648_12033345	All Organisms → cellular organisms → Bacteria → Acidobacteria	536	Open in IMG/M
3300026095\|Ga0207676_10557685	All Organisms → cellular organisms → Bacteria → Acidobacteria	1095	Open in IMG/M
3300026329\|Ga0209375_1218861	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	688	Open in IMG/M
3300026537\|Ga0209157_1026202	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3468	Open in IMG/M
3300027604\|Ga0208324_1140041	All Organisms → cellular organisms → Bacteria → Acidobacteria	662	Open in IMG/M
3300027905\|Ga0209415_10504664	All Organisms → cellular organisms → Bacteria	930	Open in IMG/M
3300028138\|Ga0247684_1064107	All Organisms → cellular organisms → Bacteria → Acidobacteria	600	Open in IMG/M
3300030707\|Ga0310038_10029055	All Organisms → cellular organisms → Bacteria → Proteobacteria	3320	Open in IMG/M
3300031231\|Ga0170824_116018382	All Organisms → cellular organisms → Bacteria → Acidobacteria	630	Open in IMG/M
3300031708\|Ga0310686_119118831	All Organisms → cellular organisms → Bacteria → Acidobacteria	662	Open in IMG/M
3300031712\|Ga0265342_10638702	All Organisms → cellular organisms → Bacteria → Acidobacteria	535	Open in IMG/M
3300031720\|Ga0307469_11574136	All Organisms → cellular organisms → Bacteria → Acidobacteria	631	Open in IMG/M
3300032160\|Ga0311301_12714997	All Organisms → cellular organisms → Bacteria → Acidobacteria	545	Open in IMG/M
3300032174\|Ga0307470_11646473	All Organisms → cellular organisms → Bacteria	538	Open in IMG/M
3300032205\|Ga0307472_100958123	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	798	Open in IMG/M
3300032515\|Ga0348332_13959084	All Organisms → cellular organisms → Bacteria → Acidobacteria	576	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	64.71%
Host-Associated	Host-Associated	35.29%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	60.50%
Plants	Host-Associated → Plants	34.45%
Aquatic	Environmental → Aquatic	4.20%
Human	Host-Associated → Human	0.84%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	59.66%
Rhizosphere	Host-Associated → Plants → Rhizosphere	22.69%
Rhizoplane	Host-Associated → Plants → Rhizoplane	11.76%
Freshwater	Environmental → Aquatic → Freshwater	2.52%
Sediment	Environmental → Aquatic → Sediment	1.68%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.84%
Digestive System	Host-Associated → Human → Digestive System	0.84%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	48.74%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	19.33%
Loam	Environmental → Terrestrial → Soil → Loam	9.24%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	9.24%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.36%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	2.52%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.52%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.68%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.68%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.84%
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	0.84%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	26.05%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	19.33%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	12.61%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	9.24%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	9.24%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.20%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.36%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.36%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	2.52%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.52%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.68%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.68%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.68%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.84%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.84%
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	0.84%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	11.76%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	10.92%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	9.24%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.04%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	4.20%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	3.36%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	3.36%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	3.36%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.52%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.52%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	2.52%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.52%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.52%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	1.68%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	1.68%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.68%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.68%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.68%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.68%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.68%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.68%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.68%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.68%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.68%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.68%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.68%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.68%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.84%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	0.84%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.84%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.84%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.84%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.84%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	0.84%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.84%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.84%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.84%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.84%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.84%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.84%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.84%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.84%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300000789	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000793	Forest soil microbial communities from Amazon forest - 2010 replicate II A001	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300003324	Sugarcane bulk soil Sample H2	Environmental	Open in IMG/M
3300004799	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-3 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005840	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2	Host-Associated	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_11112015	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010866	Boreal forest soil eukaryotic communities from Alaska, USA - C1-3 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300011409	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT423_2	Environmental	Open in IMG/M
3300011441	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT513_2	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012392	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_4_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012905	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S013-104B-2	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300013100	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300014169	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaG	Environmental	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015359	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09182015	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300017659	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300017961	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG	Environmental	Open in IMG/M
3300018026	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_100	Environmental	Open in IMG/M
3300018047	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10	Environmental	Open in IMG/M
3300018089	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_20_MG	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025949	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025986	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131 (SPAdes)	Environmental	Open in IMG/M
3300026537	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135 (SPAdes)	Environmental	Open in IMG/M
3300027604	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG (SPAdes)	Environmental	Open in IMG/M
3300027905	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)	Environmental	Open in IMG/M
3300028138	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK25	Environmental	Open in IMG/M
3300030707	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG (v2)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031712	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG	Host-Associated	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032515	FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
F14TC_1009482001	3300000559	Soil	KDKGQDYGFGVSTVRMTPLNWAEGVPIGMSSAIYHDETVALLARLMKDRGIPVVYNSFQGRVQGDAPIIETPK*
F14TC_1082742193	3300000559	Soil	VQLRVERGADLAAKDKGQDYGFGVSSVRMTPLNWAEGVPIGMSSAIYHDDTVALIARLMRERGIPVVYNSFQGQKAGDAPIIETPK*
JGI1027J11758_113057982	3300000789	Soil	LVDRGADLAVKDKGEDYGFGVSSVRMTPLNWAEGVPIGMSSAIYHDETVVLMTRLMKERGIPVVYNTFQGQKQGDAPIIETPK*
JGI1027J11758_119848271	3300000789	Soil	RGADLAAKDKGEDYGFGVSSVRMTPLNWAEGVPIGMSSPIYHDETVALISRLMKERGIPVVYNTFQGRKQGDAPIIETPR*
JGI1027J11758_123048952	3300000789	Soil	GADLAAKDKGEDYGFGVSTVRMTPLNWAEGVPIGMSSPIYHDETVALLSRLMQERQIPIVYNTFQGKKQGTAPVIAEPK*
AF_2010_repII_A001DRAFT_100671331	3300000793	Forest Soil	VELLVGRGADLAAKDKGXDYGFGVSTVRMTPLNWAEGVPIGMSSPIYHDETVALLSRLMQERQIPIVYNTFQGKKQGTAPVIPEPK*
JGI1027J12803_1041177882	3300000955	Soil	LVDRGADLAAKDKGEDYGFGVSTVRMTPLNWAEGVPIGMSSPIYHDETVALLSRLMQERQIPIVYNTFQGKKQGTAPVIAEPK*
JGI1027J12803_1089202051	3300000955	Soil	RGADLAAKDKGEDYGFGVSSVRMTPLNWAEGVPIGMSSPIYHDETVALISRLMKERGIPVVYNTFQGR
JGIcombinedJ26739_1013636182	3300002245	Forest Soil	DKGEDYGFGVSSVRMTPLNWAEGVPIGMSSAIFHNETVALMARLMKERGIPVVYNSFHGEKGAGYNFGGTEAPK*
soilH2_101741892	3300003324	Sugarcane Root And Bulk Soil	ADLAAKDKGEDYGFGASTVPMTPLNWAEGVPIGMSSAIYHPTTVALLTRLMQDRGIPVVNNKFSGQKRTP*
Ga0058863_115180553	3300004799	Host-Associated	LVDRGADLSAKDKGEDFGFGTSSVKMTPLNWAEGVPIGMSSAIFHDDTVTLITRLMKERGIPVVYNTFSGVKQNEPEILTWPERKPSKLKV*
Ga0066683_103531182	3300005172	Soil	VVELLVSRGADLTARDKGKDYGFGVTSFRMTPLNWAEGVPIGMSSAIRHDETVKLIARLMEERGIPVEYHGTFTGRKFTDAPVIEEPR*
Ga0066678_103189102	3300005181	Soil	RDKGKDYGFGATSVRMTPLNWAEGVPIGMSSAIYHDDTVALIARLMQERGIPVEYHVFQGKKYTNTPLIEEPR*
Ga0066388_1077640181	3300005332	Tropical Forest Soil	IVQWLVDHGADLAAKDKGSDYGFGVSTVRMTPLNWAEGVPIGMSSAIYHEETVKLIARLMKERGISVVYNSFQGRKEGDAPVIETPK*
Ga0070660_1006519781	3300005339	Corn Rhizosphere	AAQDKGEDFGFGASSTHMTPLNWAEGVPIGMSSAIYHDDTVALMTRLMKERGIPVVSNVFKGKKDGNYNFGGAEPAPAPTTQAPVTK*
Ga0070689_1019603332	3300005340	Switchgrass Rhizosphere	VDHGADLAAKDKGQDYGFGVSTVRMTPLNWAEGVPIGMSSAIYHDETVALIARLMRERGIPVVYNSFQ
Ga0070705_1018504942	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	DLAAKDKGEDYGFGASTVRMTPLNWAEGVPIGMSSAIYHDETVALLARLMRERGIPVVYNVFQGQKQ*
Ga0066686_104357751	3300005446	Soil	ELLVSRGADLTARDKGKDYGFGVTSFRMTPLNWAEGVPIGMSSAIRHDETVKLIARLMEERGIPVEYHGAFTGRKFSDAPIIEEPR*
Ga0066686_107856661	3300005446	Soil	ADLTARDKGKDYGFGVTSFRMTPLNWAEGVPIGMSSGISHDDTVALLARLMQERGISVEYHHTFTGRKFTDAPLIDEPR*
Ga0070684_1010099572	3300005535	Corn Rhizosphere	STHMTPLNWAEGVPIGMSSAIYHDDTVALMTRLMKERGIPVVSNVFKGKKDGNYNFGGAEPAPAPTTQAPVTK*
Ga0070731_100831174	3300005538	Surface Soil	VDRGADLAAKDMGKDYGFGQDSIRMTPLNWAEGVPIGMSSGIYRADTVELISRLMRERGIPVESHAFVGKKSQSPDTPLIGTPR*
Ga0070731_110225962	3300005538	Surface Soil	AKDNGADYGFGASSVPMTPLNWAEGVPIGMSSAIYHNDTVALMSRLMQERGIPVVSNVFHGQKPPGTPVFGQQ*
Ga0070664_1010508852	3300005564	Corn Rhizosphere	LLVDRGADLAAKDKGQDYGFGVSSVRMTPLNWAEGVPIGMSSAIYHGDTVALLVGLMKDRGIPIAYNSFQGRKQDSEPLIDQK*
Ga0068856_1002902483	3300005614	Corn Rhizosphere	AKDNGEDYGFGASSVRMTPLNWAEGVPIGGASGIYHTTTVALLTRLMTERGIPVVSNSFHAKKPDNYNFGGIGDSTK*
Ga0068864_1005400252	3300005618	Switchgrass Rhizosphere	GAAYKGANKVVQWLVDHGADLAAKDKGSDYGFGVSTVRMTPLNWAEGVPIGMSSAIYHDETVALIARLMKQRGIPVVYNSFQGRKEGDAPIIETPK*
Ga0068861_1024403071	3300005719	Switchgrass Rhizosphere	DRGADLAAKDKGQDYGFGVSSVRMTPLNWAEGVPIGMSSAIYHGDTVALLVGLMKDRGIPIAYNSFQGRKQDSEPLIDQK*
Ga0066903_1003835311	3300005764	Tropical Forest Soil	VQLLVDRGADLAAKDNGEDFGFGVSSVKMTPLNWAEGVPIGMSSAIYHDDTVALIARLMQERGIPVVYNTFHVLKQ*
Ga0066903_1052476402	3300005764	Tropical Forest Soil	KAANKVVQLLVDRGAKLDALDNGEDYGFGKRSAKMTPLNWAEGVPIGMSSAIYHADTVALLTRLMNERGIAVVTNVLAAQ*
Ga0068870_112487702	3300005840	Miscanthus Rhizosphere	TRCGRNLKCFLKVSSARLVDHGADLAAKDKGQDYGFGVSTVRMTPLNWAEGVPIGMSSAIYHDETVALIARLMRERGIPVVYNSFQGRVGGDAPVIGTPK*
Ga0081455_110454612	3300005937	Tabebuia Heterophylla Rhizosphere	VVQFLADRGGDLAAKDKGEDYGFGASTVPMTPLNWAEGVPIGMSSAIYHPATVDLITRLMQERKIPVVRNTFQGQKAGDPR*
Ga0066665_115126191	3300006796	Soil	HGADLSIKDKGRDYGFGVDSVRMTPLNWAEGVPIGMSSAIYHDDTVALITRLMRERGLQIEFHTFQGQKSGDTPLIGEPR*
Ga0066659_103745751	3300006797	Soil	VDHGADLSIKDKGRDYGFGVDSVRMTPLNWAEGVPIGMSSAIYHDDTVALITLLMRERGLQIEFHTFQGQKSGDTPLIGEPR*
Ga0066659_106403292	3300006797	Soil	VDHGADLSIKDKGRDYGFGVDSVRMTPLNWAEGVPIGMSSAIYHDDTVALITRLMRERGLPIEYHTFQGQKSGDTPLIGEPR*
Ga0075421_1013371202	3300006845	Populus Rhizosphere	ANKVVELLVDRGADLAAKDKGEDYGFGVSTVRMTPLNWAEGVPIGMSSPIYHDETVALLSRLMQERQIPIVYNTFQGKKQGTAPVIAEPK*
Ga0075421_1015384502	3300006845	Populus Rhizosphere	FLVDRGADLAAKDKGEDYGFGASTVPMTPLNWAEGVPIGMSSAIYHPTTVTLLTRLMQERGIPVVSNTFHGQKR*
Ga0075431_1013484741	3300006847	Populus Rhizosphere	AAKDKGEDYGFGVSTVRMTPLNWAEGVPIGMSSPIYHDETVALLSRLMQERKIPIVYNTFQGKKQGTAPVIPEPK*
Ga0075433_119001842	3300006852	Populus Rhizosphere	VAQFLVDRGADLAAKDKGEDYGFGVSTVRMTPLNWAEGVPIGMSSPIYHDDTVALLGRLMRERGIPIVYNTFQGQKQGNAPVIPEPPR*
Ga0075424_1024394451	3300006904	Populus Rhizosphere	AVVQLLVDRGADLAAKDKGEDYGFGASTVRMTPLNWAEGVPIGMSSAIYHDDTVALIARLMQDRGIPVVYNSFQGRKRGDAPVIPEPR*
Ga0075435_1013044952	3300007076	Populus Rhizosphere	LLVDRGADLAAKDKGEDYGFGVSTVRMTPLNWAEGVPIGMSSPIYHDETVALLSRLMQERQIPIVYNTFQGKKQGTAPVIPEPK*
Ga0075435_1013646192	3300007076	Populus Rhizosphere	QLLVERGADLAAKDKGEDFGFGTSSVKMTPLNWAEGVPIGMSSAIYHDDTVALMARLMQERGIPVVYNTFHGVKQ*
Ga0075418_124695692	3300009100	Populus Rhizosphere	AAKDKGEDYGFGASTVRMTPLNWAEGVPIGMSSAIYHDDTVALLARLMQERGIPVVRNSFQGQKQGDAPVIPEPPR*
Ga0114129_117654211	3300009147	Populus Rhizosphere	ADLAAKDKGEDYGFGVSTVRMTPLNWAEGVPIGMSSPIYHDETVALLSRLMQERKIPIVYNTFQGKKQGTAPVIPEPK*
Ga0114129_120924102	3300009147	Populus Rhizosphere	ADLAAKDKGEDYGFGASTVRMTPLNWAEGVPIGMSSAIYHDDTVALLARLMQERGIPVVRNSFQGQKQGDAPVIPEPPR*
Ga0111538_134396961	3300009156	Populus Rhizosphere	LAAKDKGEDYGFGASTVPMTPLNWAEGVPIGMSSAIYHPATVDLLSRLMQERGIPVVRNTFHGQKAQ*
Ga0111538_136137551	3300009156	Populus Rhizosphere	DKGQDYGFGVSSVRMTPLNWAEGVPIGMSSAIYHGDTVALLVGLMKDRGIPIVYNSFQGRKQDSEPLIDQK*
Ga0075423_118958011	3300009162	Populus Rhizosphere	TLLHGAAEKGADKVIQFLVDRGADLAAKDKGEDYGFGASTVSMTPLNWAEGVPIGMSSAIYHPSTVTLLTRLMQERGIPVVNNTFRGQKRTP*
Ga0105237_106199602	3300009545	Corn Rhizosphere	DRGADLAAQDKGEDFGFGASSTHMTPLNWAEGVPIGMSSAIYHDDTVALMTRLMKERGIPVVSNVFKGQKDGNYNFGGAEPPPAPTTQAPVTK*
Ga0105249_126767212	3300009553	Switchgrass Rhizosphere	YKGANKVVQLLVDRGADLAAQDKGEDFGFGASSTHMTPLNWAEGVPIGMSSAIFHDDTVALMTRLMKERGIPVVSNVFKGQKDGNYNFGGAEPPPAPTTQAPVTK*
Ga0126374_102728642	3300009792	Tropical Forest Soil	LVDRGADLAAKDKGEDYGFGASTVPMTPLNWAEGVPIGMSSAIYHPTTVTLLTRLMQERGIPVVSNTFHGQKR*
Ga0134109_103092832	3300010320	Grasslands Soil	KVVQLLVDRGADLAAQDKGEDFGFGVSSVRMTPLNWAEGVPVGMSSAIYHDDTVALITRLMQERGIPIVYNTFHGKKRGDTPVIEEPK*
Ga0126370_124865391	3300010358	Tropical Forest Soil	IVQLLVDRGADLAAKDKGEDFGFGASSVKMTPLNWAEGVPIGMSSAIYHDDTVALIARLMQERGIPVVYNTFHGLKQN*
Ga0126377_105907951	3300010362	Tropical Forest Soil	KVVQFLVDRGADLAAKDKGEDYGFGASTVPMTPLNWAEGVPIGMSSAIYHPTTVTLLTRLMQERGIPVVSNTFHGQKR*
Ga0126377_111756032	3300010362	Tropical Forest Soil	GADLSAKDKGEDYGFGVSTVRMTPLNWAEGVPIGMSSAIYRAETVALMARLMQERGIPVEYHSFHGQKQ*
Ga0126377_122856591	3300010362	Tropical Forest Soil	VVQLLVDRGADLSAKDKGEDYGFGVSSFRMTPLNWAEGVPIGMSSAIYHEDTVALIARLMKERGIPVEYHTFHPQAPGEVPGTAAPK*
Ga0126379_100474855	3300010366	Tropical Forest Soil	AKDKGEDYGFGVSTVRMTPLNWAEGVPIGMSSPIYHDETVALLSRLMQERQIPIAYNTFQGKKQGTAPVIPEPK*
Ga0134124_100916701	3300010397	Terrestrial Soil	AAQDKGEDYGFGVSSVRMTPLNWAEGVPIGMSSPIYHDETVALISRLMKERGLPVVYNTFQGRKQGNAPIIETPR*
Ga0126383_112720842	3300010398	Tropical Forest Soil	FLVDRGGDLSAKDKGEDYGFGVSTVRMTPLNWAEGVPIGMSSAIYRAETVALMARLMQERGIPVEYHSFHGQKQ*
Ga0134122_120172842	3300010400	Terrestrial Soil	LHGAGYKGANKVVQFLVDRGADLSAKDKGEDYGFGVSTVRMTPLNWAEGVPIGMSSPIYHDDTVALMAQLMKDRGLPVVYNTFQGQKQGNAPIIETPK*
Ga0126344_11029981	3300010866	Boreal Forest Soil	AGFKGANKAVELLVDHGARLDALDKGEDYGFGVSSVRMTPLNWAEGVPIGMSSAIYHTETVALMARLMKEKGIPVVYNSFHGQKSPAYQFGAPEAPK*
Ga0150983_130201511	3300011120	Forest Soil	KGEDYGFGVSSVRMTPLNWAEGVPIGMSSAIYHTETVALMARLMKEKGIPVVYNSFHGEKGSGYNFGSPEAAKP*
Ga0137393_108623741	3300011271	Vadose Zone Soil	VVQLLVDRGADLAATDKGEDFGFGVSSVHMTPLNWAEGVPIGMSSAIAHNDTVALMARLMRERGIPVVSNTFHGNKGPNYQFGGGALDPGFGNGPSEPATK*
Ga0137323_10274451	3300011409	Soil	KVVQFLVDRGADLSAKDLGKDYGFGTSSVRMTPLNWAEGVPIGMSSAIYHDDTVALLVRLMQERGVPVIYNSFQGRKGEAQAR*
Ga0137452_12375241	3300011441	Soil	LAAKDKGEDYGFGASTVPMTPLNWAEGVPIGMSSAIYHPITVDLLERLMQERGIPVIKNSFQGQKAADR*
Ga0137362_110414542	3300012205	Vadose Zone Soil	QDKGEDFGFGASSARMTPLNWAEGVPIGMSSAIYQKDTVALLTRLMNERGIPIVSATFRGRKSDDYVFGGNPDSSK*
Ga0137378_104289391	3300012210	Vadose Zone Soil	LVDRGADLAAQDKGEDFGFGTSSAHMTPLNWAEGVPIGMSSAIFHKDTVALMTRLMQERGIPVVSNVFRGQKAPTYVFGGANAEPAQ*
Ga0150985_1146347961	3300012212	Avena Fatua Rhizosphere	LDALDKGEDYGFGVSSVRMTPLNWAEGVPIGMSSAIYHTETVALMSRLMQERGIPVVSNAFHGRKGADYNFNIPDASK*
Ga0137384_109006671	3300012357	Vadose Zone Soil	QVVQLLVDRGADLAAQDKGEDFGFGTSSAHMTPLNWAEGVPIGMSSAIFHKDTVALMTRLMQERGIPVVSNVFRGQKAPTYVFGGANAEPAQ*
Ga0134043_12020451	3300012392	Grasslands Soil	EMLVSRGADLTARDKGKDYGFGVTSFRMTPLNWAEGVPIGMSSAIRHDETVKLIARLMEERGIPVEYHGTFAGRKFSDAPVIEEPR*
Ga0157296_103181811	3300012905	Soil	AKDKGQDYGFGVSSVRMTPLNWAEGVPIGMSSAIYHGDTVALLVGLMKNRGIPIAYNSFQGRKQDSEPLIDQK*
Ga0126375_106224301	3300012948	Tropical Forest Soil	FLVDRGADLAAKDKGEDYGFGVSTVRMTPLNWAEGVPIGMSSPIYHDDTVALMSRLMRERGIPVVYNTFQGQKQGNAPVIPEPEQSK*
Ga0126369_109009071	3300012971	Tropical Forest Soil	KDKGEDYGFGVSSVRMTPLNWAEGVPIGMSSPIYHDETVALISRLMKERGIPVVYNTFQGRKQGDAPIIETPR*
Ga0126369_127508001	3300012971	Tropical Forest Soil	GANKVVQLLVDRGADLAAKDKGQDYGFGVSTVRMTPLNWAEGVPIGMSSAIYHDDTVALIARLMRERGIPVVYNSFQGRVQGDAPIIETPR*
Ga0157373_113378261	3300013100	Corn Rhizosphere	EDFGFGASSTHMTPLNWAEGVPIGMSSAIYHDDTVALMTRLMKERGIPVVSNVFKGQKDGNYNFGGAEPPPAPTTQAPVTK*
Ga0163162_105176661	3300013306	Switchgrass Rhizosphere	KGEDFGFGASSTHMTPLNWAEGVPIGMSSAIFHDDTVALMTRLMKERGIPVVSNVFKGQKDGNYNFGGAEPPPAPTTQAPVTK*
Ga0163162_122622231	3300013306	Switchgrass Rhizosphere	KVVQLLVDRGADLAVKDKGEDYGFGVSSVRMTPLNWAEGVPIGMSSPIYHDDTVALMTRLMKDRGIPVVYNTFQGQKQGDAPIIETPK*
Ga0181531_106223111	3300014169	Bog	KGEDYGFGVSSVRMTPLNWAEGVPIGMSSAIYHTETVALMARLMQEKGIPVVYNSFHGEKGSGYNFGSPEAAKP*
Ga0157380_106814241	3300014326	Switchgrass Rhizosphere	AYKGANRVVQWLVDHGADLAARDKGQDYGFGVSTVRMTPWNWAEGVPIGMSSAIYHDETVALIARLMRERGIPVVYNSFQGRVGGDAPVIETPK*
Ga0157380_134239591	3300014326	Switchgrass Rhizosphere	YKGANKVVQFLVDRGADLSAKDKGEDYGFGVSTVRMTPLNWAEGVPIGISSPIYHDDTVALMAQLMKDRGLPVVYNTFQVQKQ*
Ga0157379_118199341	3300014968	Switchgrass Rhizosphere	AYKGANKVVQWLVDHGADLAAKDKGSDYGFGVSTVRMTPLNWAEGVPIGMSSAIYHDETVALIARLMKERGIPVVYNSFQGRKEGDAPIIETPK*
Ga0157376_112909321	3300014969	Miscanthus Rhizosphere	RGADLAAQDKGEDFGFGASSTHMTPLNWAEGVPIGMSSAIFHDDTVALMTRLMKERGIPVVSNSFKGQKPTYNFGALENDPEAAPPAKK*
Ga0134085_100586441	3300015359	Grasslands Soil	TARDKGKDYGFGVTSFRMTPLNWAEGVPIGMSSAIRHDETVKLIARLMEERGIPVEYHGTFAGRKFSDAPVIEEPR*
Ga0134085_101929963	3300015359	Grasslands Soil	DLAAKDKGEDYGFGVSTVRMTPLNWAEGVPIGMASAIYHDETVTLLTRLMQERGIPVVYNTFHGQKPTTPGQ*
Ga0132258_109434081	3300015371	Arabidopsis Rhizosphere	AAYKGANTIVQWLADHNADLAAKDKGSDYGFGVSTVRMTPLNWAEGVPIGMSSAIYHEETVALIVRLMKQRGIPVVYNSFQGRKEGDAPVIETPK*
Ga0132257_1010648071	3300015373	Arabidopsis Rhizosphere	GANKVVQFLVDRGADLSAKDKGEDYGFGVSTVRMTPLNWAEGVPIGMSSAIYHAETVALMARLMQERGIPVEYHSFHGQKQ*
Ga0134083_105046361	3300017659	Grasslands Soil	LLVDRGADLAAKDKGEDYGFGVSTVRMTPLNWAEGVPIGMSSAIYHGDTVALLTRLMQERGIPVVYNTFHGQKPPDAELPIDRK
Ga0187778_108364802	3300017961	Tropical Peatland	YKGANKAVQLLVDRGANLAAIDKGADFGFGASSTQMTPLNWAEGVPIGMSSAIYHDETVALLSRLMQERGIPVVHHVFHGQKAEQQ
Ga0187857_102178442	3300018026	Peatland	QVLVDHGAKLDALDKGEDYGFGVSSTRMTPLNWAEGVPIGMSSAIFHTDTVALMAKLMKEKGIPVVYNSFHGEKGAGYNFGGAEAPK
Ga0187859_109031001	3300018047	Peatland	AVQLLVDRGAKLDVLDKGEDYGFGVSTVRMTPLNWAEGVPIGMSSAIYHTDTVELMSRLMTERGIPVVKNSFHGQKSGDYNFGAPPAQ
Ga0187774_112703681	3300018089	Tropical Peatland	KGANKAVQLLVDRGAKLDAKDNGEDYGFGVRTIHMTPLNWAEGVPIGMSSAIYHTDTVALLARLMEQRGIPIITNAQAKK
Ga0210400_102192213	3300021170	Soil	GARLDALDKGEDYGFGVSTVRMTPLNWAEGVPIGMSSPIYHAETVALMARLMKERGIPVVYNSFKGQKPPTYGFPDPASAK
Ga0210388_109227572	3300021181	Soil	LVDRGAKLDVLDKGEDYGFGVSSVRMTPLNWAEGVPIGMSSAIYHTDTVELMSRLMTERGIPVVKNSFHGQKSGDYNFGAPPPPESSK
Ga0210384_113989702	3300021432	Soil	ALDKGEDYGFGVSSARMTPLNWAEGVPIGMSSAIYHRDTVALMARLMKEKGIPVVYNSFSGQKSPDYRFNAPEAPK
Ga0210392_112981832	3300021475	Soil	LDALDKGEDYGFGVSSTRMTPLNWAEGVPIGMSSAIYHTETVALMARLMKEKGIPVVYNSFHGQKPPEYHFGGSEAPQ
Ga0210409_115291732	3300021559	Soil	KGANKVVQFLVDHGADLAAKDKGEDFGFGVSSVHMTPLNWAEGVPIGMSSAIFHNDTVVLMTRLMQERGIPVVSNTFHGNKGENYQFGGGALDPGFGNAPPESATK
Ga0126371_107005281	3300021560	Tropical Forest Soil	LVGRGADLAAKDKGEDYGFGVSTVRMTPLNWAEGVPIGMSSPIYHDDTVALLSRLMQERQIPIVYNTFQGKKQGTAPVIPEPK
Ga0207699_103816912	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	YKGANKVVQFLVDHGADLAAKDKGEDFGFGVSSVHMTPLNWAEGVPIGMSSAIFHNDTVALMTRLMQERGIPVVSNTFHGNKGENYQFGGGATDPGFGNGPAPPAK
Ga0207701_101227241	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	VDHGADLAAKDKGQDYGFGVSTVRMTPLNWAEGVPIGMSSAIYHDETVALIARLMRERGIPVVYNSFQGRVGGDAPVIETPK
Ga0207711_102035393	3300025941	Switchgrass Rhizosphere	AGYKGANKVVQLLDDRGADLAAQDKGEDFGFGASSTHMTPLNWAEGVPIGMSSAIFHDDTVALMTRLMKERGIPVVSNVFKGQKDGNYNFGGAEPPPAPTTQAPVTK
Ga0207711_115673661	3300025941	Switchgrass Rhizosphere	WLVDHGADLAAKDKGSDYGFGVSTVRMTPLNWAEGVPIGMSSAIYHDETVALIARLMKERGIPVVYNSFQGRKEGDAPIIETPK
Ga0207667_103355993	3300025949	Corn Rhizosphere	NKVVQLLVDRGADLAAQDKGEDFGFGASSTHMTPLNWAEGVPIGMSSAIYHDDTVALMTRLMKERGIPVVSNVFKGKKDGNYNFGGAEPAPAPTTQAPVTK
Ga0207712_113489942	3300025961	Switchgrass Rhizosphere	GSICARCKARHRKGPSIRTSMTTSVTRCGRNLKCFLKVSSARLVDHGADLAATDKGQDYGFGVSTVRMTPLNWAEGVPIGMSSAIYHDETVALIARLMRERGIPVVYNSFQGRVGGDAPVIETPK
Ga0207658_113803363	3300025986	Switchgrass Rhizosphere	VVQWLVDHGADLAAKDKGSDYGFGVSTVRMTPLNWAEGVPIGMSSAIYHDETVALIARLMKERGIPVVYNSFQGRKEGDAPIIETPK
Ga0207702_108218531	3300026078	Corn Rhizosphere	GFGASSTHMTPLNWAEGVPIGMSSAIYHDDTVALMTRLMKERGIPVVSNVFKGKKDGNYNFGGAEPAPAPTTQAPVTK
Ga0207648_120333451	3300026089	Miscanthus Rhizosphere	DKGEDYGFGASTVRMTPLNWAEGVPIGMSSAIYHDETVALLARLMRERGIPVVYNVFQGQKQ
Ga0207676_105576852	3300026095	Switchgrass Rhizosphere	GAAYKGANKVVQWLVDHGADLAAKDKGSDYGFGVSTVRMTPLNWAEGVPIGMSSAIYHDETVALIARLMKQRGIPVVYNSFQGRKEGDAPIIETPK
Ga0209375_12188611	3300026329	Soil	ALHGAAYKGANKVVELLVSRGADLTARDKGKDYGFGVTSFRMTPLNWAEGVPIGMSSAIRHDETVKLIAHLMEERGIPVEYHGTFTGRKFTDTPVIEEPR
Ga0209157_10262021	3300026537	Soil	ELLVSRGADLTARDKGKDYGFGVTSFRMTPLNWAEGVPIGMSSAIRHDETVKLIARLMEERGIPVEYHGAFTGRKFSDAPIIEEPR
Ga0208324_11400412	3300027604	Peatlands Soil	GYKGANKVVQFLVDRGANLAAQDNGEDFGFGKSSVRMTPLNWAEGVPIGMSSAIYHTDTVALLTRLMTERGIPVVSNTFHGRKPDSYPVIGEP
Ga0209415_105046643	3300027905	Peatlands Soil	ALDKGEDYGFGVSSVRMTPLNWAEGVPIGMSSAIYHTDTVELMSRLMTERGIPVVKNSFHGQKAGDYNFGPPTPQQ
Ga0247684_10641071	3300028138	Soil	DRGADLSAKDKGEDYGFGVSTIRMTPLNWAEGVPIGMSSAIYHADTVALMARLMQERGLAVEYHTFHGEKQ
Ga0310038_100290551	3300030707	Peatlands Soil	GAGYKGANKVVQFLVDRGANLAAQDNGEDFGFGKSSVRMTPLNWAEGVPIGMSSAIYHTDTVALLTRLMTERGIPVVSNTFHGRKPDSYPVIGEP
Ga0170824_1160183821	3300031231	Forest Soil	LLVDRGAKLDALDKGEDYGFGVSSVRMTPLNWAEGVPIGMSSAIYHSDTVALMSKLMTARGIPVVLNSFHGQKQGDYNFGAVVPEK
Ga0310686_1191188311	3300031708	Soil	KAVQLLVDRGAKLDVLDKGEDYGFGVSSVRMTPLNWAEGVPIGMSSAIYHTDTVELMSRLMTERGIPVVKNSFHGQKSGDYNFGAPPPQQQ
Ga0265342_106387022	3300031712	Rhizosphere	AQDKGEDFGFGASSTHMTPLNWAEGVPIGMSSAIYHDDTVALMTRLMKERNIPVVSNVFKGQKDGNYNFGGAEPGAAPTTQAPVTK
Ga0307469_115741362	3300031720	Hardwood Forest Soil	KVVQLLVDRGADLAATDKGEDFGFGVSSVHMTPLNWAEGVPIGMSSAIAHNDTVALMARLMRERGIPVVSNTFHGNKGPNYQFGGGATDPGFGNSPAPAAK
Ga0311301_127149971	3300032160	Peatlands Soil	MRARTKPFGFWWTVAPKLDVLDEGEDYGFGVSTVRMPPLNWVEGVPIGMSSAIYHTDTVELMNRLMTERGIHVVKNSFHGQKSGNYNFGVAPSAQ
Ga0307470_116464731	3300032174	Hardwood Forest Soil	KGEDYGFGVSSVRMTPLNWAEGVPIGMSSAIYHTDTVALMARLMKEKGIPIVYNSFRGQKSPEYRFGGADAPK
Ga0307472_1009581232	3300032205	Hardwood Forest Soil	VELLVSRGADLTARDKGKDYGFGVTSFRMTPLNWAEGVPIGMSSAIRHDETVKLIARLMEERGIPVEYHGTFTGRKFTDTPVIEEPR
Ga0348332_139590842	3300032515	Plant Litter	ANKAVQLLVDRGAKLDALDKGEDYGFGVSSVRMTPLNWAEGVPIGMSSAIYHTDTVDLMSRLMQERGIPVVKNSFHGQKGGDYSFGGPPPPDSSK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F074623

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences