Basic Information | |
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Family ID | F074605 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 119 |
Average Sequence Length | 45 residues |
Representative Sequence | MWRPNEPVEEDVSNLPGIDPHSKRRRSRRRAWRDGLADQTVVK |
Number of Associated Samples | 84 |
Number of Associated Scaffolds | 119 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 98.32 % |
% of genes near scaffold ends (potentially truncated) | 99.16 % |
% of genes from short scaffolds (< 2000 bps) | 92.44 % |
Associated GOLD sequencing projects | 78 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.14 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (94.118 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (52.941 % of family members) |
Environment Ontology (ENVO) | Unclassified (68.908 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Unclassified (52.101 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68. |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 4.23% β-sheet: 0.00% Coil/Unstructured: 95.77% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.14 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Vadose Zone Soil Tropical Forest Soil Bulk Soil Soil Grasslands Soil Soil Soil Tropical Forest Soil Corn, Switchgrass And Miscanthus Rhizosphere Populus Rhizosphere Miscanthus Rhizosphere Tropical Rainforest Soil |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
Ga0066388_1018231892 | 3300005332 | Tropical Forest Soil | MMWRPNDPVEEDISTPLGIEPQGKHRRSHRRAWRDGLADQTVVLG |
Ga0066388_1019584811 | 3300005332 | Tropical Forest Soil | MWRPNELVDDDVSNIDQQGKRRRSGRRAWRDGLADQTVVQ |
Ga0066388_1022083542 | 3300005332 | Tropical Forest Soil | MWRPNEPVEEGVSDFPGIDRQSKRRRSRRSWRDGLAAQTVVRNL |
Ga0008090_100301094 | 3300005363 | Tropical Rainforest Soil | MWRPNEPVVEDISDLLGNSLQNKRRRSRRHAWRDGLADQTVVK |
Ga0070706_1017417072 | 3300005467 | Corn, Switchgrass And Miscanthus Rhizosphere | MTAWRPIESVEDDVSALPDADPQNKRRPSRRRAWRDGLAAQ |
Ga0066701_109206621 | 3300005552 | Soil | MWRPNDPTREEISNVPGMDPQSKRRRSRRRAWRDGLADQTVVT |
Ga0066695_104431381 | 3300005553 | Soil | MTMWRSNEPVEDDISDLPGIDFQNKCRRARRRAWRDGLS |
Ga0066905_1011006022 | 3300005713 | Tropical Forest Soil | MWRPNERVVEDISDLPGNGPQNKRRRSRRRAWRDGLADQTVVKTLE |
Ga0066903_1025877372 | 3300005764 | Tropical Forest Soil | MTMWRPTEPAEEDVSDLPGIDPQSGRRRSRRRAWRD |
Ga0066903_1027264401 | 3300005764 | Tropical Forest Soil | MWRPNEPVEEDVSDLPGIDPHSKRCRSGRRAWRDGLADQTVVK |
Ga0066903_1031309142 | 3300005764 | Tropical Forest Soil | MWKPNEPIEEDISHVLGNDMQSKRRRSRRRAWRDGLADQTVVRNLED |
Ga0066903_1038921602 | 3300005764 | Tropical Forest Soil | MLEGVTTMWRPSEVVEEDVSNLSGIDPQGKRRQSRRRAWRDGLADQTVVKS |
Ga0066903_1072509293 | 3300005764 | Tropical Forest Soil | MWGPNEPLEEDVLDLPGPDPQNKRRRSRRRAWRDG |
Ga0066903_1074106932 | 3300005764 | Tropical Forest Soil | MWRPNEPAEEDVSNPSGIDPGSKRRRSQRQASRDGLAD |
Ga0066903_1074607851 | 3300005764 | Tropical Forest Soil | MTMWRPNEPVEDVSEPPGIDLQNKRRRSRRRAWRDGLADETVVGTLEHVRSYRAF |
Ga0066659_114045972 | 3300006797 | Soil | MWGPNDPTREEISNVPGMDPQSKRRRSRRRAWRDGLAD |
Ga0075421_1011440612 | 3300006845 | Populus Rhizosphere | MTMWRPTEPVEEDVSDLPGIDPQSKRRRSRRHRWRDGLADQTVV |
Ga0075431_1003437791 | 3300006847 | Populus Rhizosphere | MTMWRSNEPVEGDISDLPGIDFQNKCRRARRRAWRDGLSDQTVIKALES |
Ga0075434_1006534782 | 3300006871 | Populus Rhizosphere | MWSDPVEEDVSVPLDIGPQGKRRRSRRRAWRDGLADQTVVQGLE |
Ga0075424_1004779551 | 3300006904 | Populus Rhizosphere | MWSDPVEEDVSVPLDIGPQGKRRRSRRRAWRDGLADQTVVQGLEDVRSY |
Ga0105245_128243302 | 3300009098 | Miscanthus Rhizosphere | MWRPNEPVEEDVSDLPGIDPHSNRRRSRCRAWRDGLADQTVVKTLEDARSYRAF |
Ga0126373_110066191 | 3300010048 | Tropical Forest Soil | MTMWRPTEPAEEDVSDRPGIDPQSKRRRSRRRAWRDGLADQTVVTNLEDV |
Ga0126379_127589502 | 3300010366 | Tropical Forest Soil | MDARIVATWSPNEAVEEDVSDLPGIDPQSKRRRSRRRAWRDGLAD |
Ga0126383_122374062 | 3300010398 | Tropical Forest Soil | MWRPNEPVEEDVSGPLGIDPRGRRRRSAWRDGLADQTVVK |
Ga0124850_11342831 | 3300010863 | Tropical Forest Soil | MLEDAMWRPNEPSEEDVSDLPDPQSKRRRSRRRAWRDGL |
Ga0137364_114576862 | 3300012198 | Vadose Zone Soil | MAMWRPNEPGEENVSNRAGIDSQNKRRRSRRRAWRDGLRDQTVIQNP |
Ga0137365_104278692 | 3300012201 | Vadose Zone Soil | MWRPNESVEEGVSGLPGNDLQNKRRRSRRRAWRDGLADQTVVKALE |
Ga0137379_110602012 | 3300012209 | Vadose Zone Soil | MWRPNEAVEEDVSNLLGIDPQSNRRRSRRRAWRDGLADQTVVNSL |
Ga0137369_102415212 | 3300012355 | Vadose Zone Soil | MTMWRSNEPVEDNMSDLPGIDFQNECRRSRRRAWRDGLADQTVVKNFE |
Ga0137361_110021302 | 3300012362 | Vadose Zone Soil | MTMWRLNEPVEEDVSDLPGIDPHSKRRRSRCRAWRD |
Ga0137359_107777751 | 3300012923 | Vadose Zone Soil | MWRPNEPVEEDVSDLPGIDPHSKRHRSRRHAWRDGLAN |
Ga0182041_120891041 | 3300016294 | Soil | MWRPTEPAKEDVARLPGIDPRGKRRRPRRRAWRDGLADQTVVQTLED |
Ga0182033_104644751 | 3300016319 | Soil | MTMWRPNELAEEDVSDLPGIDPHSKRRRSRRRAWR |
Ga0182035_111653631 | 3300016341 | Soil | MTTWRPNEPVEENMLNLAGIDPQNNRRSRRRAWRVGLADQTVVGTLE |
Ga0182032_105061702 | 3300016357 | Soil | MTTWRPNEPVEENMLNLAGIDPQNNRRSRRRAWRV |
Ga0182034_102792861 | 3300016371 | Soil | MWRPAEPAEEDVSNLPGIDPHGKRHRSRRRAWRDGLADQTVVKTLEDV |
Ga0182034_109943102 | 3300016371 | Soil | MTMWRPTEPAEEDVSDLPGIDPRGKRRRSRRRAWRDRLAD |
Ga0182034_118492702 | 3300016371 | Soil | MWKPNEPVVEDISDLASNDMQSKRRRSRRRAWRDGLADETVVGTLE |
Ga0182040_113631682 | 3300016387 | Soil | MWRPTEPVEEDVSDLPGIDPHGKRRRSRRRAWRDGLADQTVVQNLEHVRSYRAYE |
Ga0182037_103516932 | 3300016404 | Soil | MTVWRPTEPVEEDLSDLPGIGPQSKRRRSRRRAWRDGLADQTVVKTL |
Ga0182039_102384991 | 3300016422 | Soil | MTMWRPAEPAEEDVSNLPGIDPHGKRHRSRRRAWRDGLA |
Ga0182039_105124252 | 3300016422 | Soil | MTMWRPTEPVEEDISDLPGIDPHGKRRRSRRRAWRDGL |
Ga0182039_117923162 | 3300016422 | Soil | MWRPNEPVEEDVSAPLGIDPQGKRRRSHRRAWRDGLAD |
Ga0182038_101649833 | 3300016445 | Soil | MTMWRPTEPAKEDVARLPGIDPRGKRRRPRRRAWRDGLADQTVVQTL |
Ga0066667_103759402 | 3300018433 | Grasslands Soil | MWRPNDPTREEISNVPGMDPQSKRRRSRRRAWRDGLADQTVVTTLE |
Ga0210406_109698772 | 3300021168 | Soil | MWKSNDPVEEDVSAPLGIDPQGKRSRSRRRAWRDGLADETVVQGVEDVR |
Ga0213877_100977741 | 3300021372 | Bulk Soil | MTMWRPNEPAEEDGSDLPGIGPHSKRRRSRRRAWRDGLADQTVVSSLED |
Ga0126371_125403882 | 3300021560 | Tropical Forest Soil | MVELPHHRPMTMWRLTEPAKEDVSDLPPIDPQSKRRRSRRRAWRDGLAD |
Ga0207684_108971082 | 3300025910 | Corn, Switchgrass And Miscanthus Rhizosphere | MTAWRPIESVEDDVSALPDADPQNKRRSSRRRAWRDGLAAQTV |
Ga0209465_106141301 | 3300027874 | Tropical Forest Soil | MWKPNEPLEEDVLDLPGPDPQNKRRRSRRRAWRDGL |
Ga0318516_100469074 | 3300031543 | Soil | MWRPNEPVVEDISDLAGNDMQSKRRRSRRRAWRDGLADQT |
Ga0318516_102763501 | 3300031543 | Soil | MTMWRPTEPDEDDVSDLPGIDPQSKRRRSRRARCG |
Ga0318516_106480591 | 3300031543 | Soil | MWRPNEPAEEDISDLPGIDPQSKRRRSRHRDWRNGLADQTVVITLE |
Ga0318541_102553391 | 3300031545 | Soil | MWRPNEPVEEDGSNLGGIDPLGKRRRSRRGAWRDG |
Ga0318541_106834421 | 3300031545 | Soil | MWPNEPVEEDISHLPGNDMQSKRHRSRRAWRHGLADQTVIQVLE |
Ga0318515_104601381 | 3300031572 | Soil | MWRPNEPAEEDISDLPGIDPQSKRRRSRHRDWRNGLADQTV |
Ga0318515_105401242 | 3300031572 | Soil | MWPNEPVEEDISDVPDIGPENKRRRSRRRAWRDGLADQTVVRTLEEVRSY |
Ga0310915_105889251 | 3300031573 | Soil | MTMWRPNEAVEEDVSNLSSIDPQSERRRSRRRAWRDGLADQTVVR |
Ga0318542_107425282 | 3300031668 | Soil | MWRPTEPAEEDVSDLPGIDPHGKRRRSRRRAWRDGLADQTVVKTLENVRSYRAFE |
Ga0318561_108557472 | 3300031679 | Soil | MWRPAEPAEEDVSNLPGIDPHGKRHRSRRRAWRDGLADQTVVKTLE |
Ga0318572_105759032 | 3300031681 | Soil | MWRPNDPIVEDASAPLGIDPQGKRRRSRRRAWRDGLADQTVVQG |
Ga0318493_101807371 | 3300031723 | Soil | MWRPNEPVVEDISDLRGNDLQNKRRRSRRRAWRDGLADQTVVKVV |
Ga0318500_105666021 | 3300031724 | Soil | MWKPNEPVVEDISDLASNDMQSKRRRSRRRAWRDGLADQTVVKALEDVRSYR |
Ga0318501_101618532 | 3300031736 | Soil | MLEDAMWRPNERVEEDASDPPGIDPHSKRRRPRRRAWRDGLADQTVV |
Ga0318492_101849672 | 3300031748 | Soil | MWRPNEPVVEDISDLRGNDLQNKRRRSRRRAWRDGLADQTVVKV |
Ga0318494_101292902 | 3300031751 | Soil | MWRPNEAVEEDVSNLSSIDPQSERRRSRRRAWRDGLADQTVVRILEDVRSY |
Ga0318494_107985081 | 3300031751 | Soil | MWRPAEPAEEDVSNLPGIDPHGKRHRSRRRAWRDGLADQTVVKTLEDVR |
Ga0318494_108320951 | 3300031751 | Soil | MTMWRPNELAEEDVSDLPGIDPHSKRRRSRRRAWRDGLADQ |
Ga0318521_101434891 | 3300031770 | Soil | MWRPNEPVEEDVPHHAGIDLQNKRRRSRRRAWRDGLADETVV |
Ga0318521_102772201 | 3300031770 | Soil | MWRPNEPVVEDISDLRGNDLQNKRRRSRRRAWRDGLADQTVVKVVEDVRSY |
Ga0318521_106778531 | 3300031770 | Soil | MWPNEPVEEGVSEPPGIDPQSKRRRSRRRAWRGGLADQTVVQNFE |
Ga0318543_102419391 | 3300031777 | Soil | MWRPAEPAEEDVSNLPGIDPHGKRHRSRRRAWRDGLADQTVVKTLEDVRS |
Ga0318566_104492303 | 3300031779 | Soil | MWRPNEPAVEDISDLPGNGIQSKRRSRRRAWRDGLADQTVVQGLEDVR |
Ga0318529_100453881 | 3300031792 | Soil | MWRPNEPLEEDVSDLPGIDPHSKRCRSRRRPWRDGLADQTVVKTLEDARAY |
Ga0318529_100999961 | 3300031792 | Soil | MWRPNEAVEEDVSNLSSIDPQSERRRSRRRAWRDGLADQTVVRILEDVRSYR |
Ga0318503_100470581 | 3300031794 | Soil | MWRPNEPVVEDISDLRGNDLQNKRRRSRRRAWRDGLADQTVVKVVEDVRSYRAFE |
Ga0318550_103423311 | 3300031797 | Soil | MTIWRSNDPVEDDVSDLPGIDFQNTRRRSRRRGWRDGIADQTVVRTLEDAR |
Ga0318523_101229482 | 3300031798 | Soil | MTVWRPTEPVEEDLSDLPGIGPQSKRRRSRRRAWRDGLADQTVVTTLEHARSY |
Ga0318568_108141762 | 3300031819 | Soil | MWPNEPVEEDISDVPDIGPENKRRRSRRRAWRDGLADQTVVRTLE |
Ga0318568_109159692 | 3300031819 | Soil | MWRPNEPVVEDISDLRGNDLQNKRRRSRRRAWRDGLADETVVG |
Ga0310917_1000405313 | 3300031833 | Soil | MWRPNEPLEEDVSDLPGIDPHSKRCRSRRRPWRDGLADQTVVKTLEDARAYRAF |
Ga0310917_100302421 | 3300031833 | Soil | MWKPNEPVVEDISDLASNDMQSKRRRSRRRAWRDGLADQTVV |
Ga0318517_100410481 | 3300031835 | Soil | MWRPAKPTEEDVWNLPGIDPHGKRHRSRRRAWRDGLA |
Ga0318511_100918652 | 3300031845 | Soil | MTMWRPNEPVEDVSDPPGIDLQNKRRRSRRRAWREG |
Ga0318511_101380212 | 3300031845 | Soil | MWRPNEPVVEDASAPLGIDPQCKRRRSRRRAWRYGLADQTVVQNHE |
Ga0318511_102050232 | 3300031845 | Soil | MWRPNERVEEDASDPPGIDPHSKRRRPRRRAWRDGLADQTVVQGLEDVQSYRAFE |
Ga0318511_102342752 | 3300031845 | Soil | MMMWRPNEPVVEDISDLAGNDMQSKRYRSRRRAWRDGLA |
Ga0318511_103889522 | 3300031845 | Soil | MWRPTEPVEEDVSDLPGIDPHGKRRRSRRRAWRDGLAD |
Ga0318512_101650992 | 3300031846 | Soil | MWRPTEPAEDVSDPAGIDLQNKRRRSRRRAWRDGLADQTVVTTLEHVRS |
Ga0318527_100627051 | 3300031859 | Soil | MWRPAKPTEEDVWNLPGIDPHGKRHRSRRRAWRDGLADQTVVKTLEDVRSYRA |
Ga0306925_105840181 | 3300031890 | Soil | MTMWRPNEPVEEDVSNLPGIDPHSKRRRSRRRAWRDGLA |
Ga0318551_109608181 | 3300031896 | Soil | MLEDAMLRPNEPVEEDVSDLPGIDPHSKRRRSRRRAWRGLADQTVVKTLEDVRSYR |
Ga0318520_106563441 | 3300031897 | Soil | MDARIVAMWSPNEAVEEDVSDLPGIDPQSKRRRSRRRAWRDGL |
Ga0318520_109339062 | 3300031897 | Soil | MWPNEPVEEDISDVPDISPQSKRRRSRRRAWRDGLADQTVVRNVED |
Ga0318520_109690302 | 3300031897 | Soil | MWPNEPVEEDISDVSDIGPQSNRRRSRRRAWRDGLADQTVVRNVEEV |
Ga0318520_109920841 | 3300031897 | Soil | MMWRPNEPVEEDGSNLVGIHPQSTRSRSRRRAWRDGLADQTVVKTLEDVRSYRA |
Ga0306923_108729822 | 3300031910 | Soil | MWGPNEPIGENVSDVPGIDPQKRRRSRHRAWPDGLADQTVVKTLENIRSYRSFERTL |
Ga0306921_107001472 | 3300031912 | Soil | MTMWRPTEPAEEEVSDLPGIDPQGKRRRSRRRIWRDGLADQTVVTTLEHARSY |
Ga0310910_102082262 | 3300031946 | Soil | MWRPTEPAEEDVLNLPGIDPLSKRRQSRRRAWRDGLADQTV |
Ga0310910_105508002 | 3300031946 | Soil | MTMWRPTEPVEADVSDLPDIDPHSKRGRSRRRAWRDGLADQTVVKTL |
Ga0310910_111725392 | 3300031946 | Soil | MWPNEPVEEDISHLPGNDMQSKRHRSRRAWRHGLADQTVIQVLEDAR |
Ga0310910_112017462 | 3300031946 | Soil | MWRPNETVEGDVSDLLGIDPPNKRRRSRRRAWRDGLADQTVVRNVEEVRP |
Ga0306926_100840951 | 3300031954 | Soil | MTMWRPNELAEEDVSDLPGIDPYSKRRRSRRRAWRDGLA |
Ga0306926_108592421 | 3300031954 | Soil | MTMWRPNEPAEEDISDLPGIDPQSKRRRSRHRDWRNGLADQTVVITLEHVRS |
Ga0318569_102521181 | 3300032010 | Soil | MWRPNEPVEEDVPHHAGIDLQNKRRRSRRRAWRDGLADETVVSNLE |
Ga0318507_104677442 | 3300032025 | Soil | MWPNEPVEEDISDVPDIGPENKRRRSRRRAWRDGLADQTVVRTLEEVRS |
Ga0318559_102035942 | 3300032039 | Soil | MTVWRPTEPVEEDLSDLPGIGPQSKRRRSRRRAWRDGLADQTVVTTLEHA |
Ga0318545_100416033 | 3300032042 | Soil | MWRPNEPVVEDISDLRGNDLQNKRRRSRRRAWRDGLADQTVVKVVEDVRSYRA |
Ga0318558_101100312 | 3300032044 | Soil | MTMWRPNEAVEEDVSNLSSIDPQSERRRSRRRAWRDGLADQTVVRILEDVRSYR |
Ga0318532_100634762 | 3300032051 | Soil | MWRPNEPVEEDVSAPLGIDPQGKRRRSHRRAWRDGLADQTVVQNLEDVRAY |
Ga0318506_101942822 | 3300032052 | Soil | MTMWRPTEPAEDDVSDLPPIDPQSKRRRSRRRAWGDG |
Ga0318575_100299093 | 3300032055 | Soil | MWRPTEPAEDVSDPAGIDLQNKRRRSRRRAWRDGLADQTVVTTL |
Ga0318533_100996901 | 3300032059 | Soil | MWPNEPVEEGVSEPPGIDPQSKRRRSRRRAWRGGLADQTVVQNFEDARAYR |
Ga0318514_102598522 | 3300032066 | Soil | MWRPNEPVVEDISDLRGNDLQNKRRRSRRRAWRDGLADETVVGTLEHVR |
Ga0306924_100906062 | 3300032076 | Soil | MWRPNEPVEEDVSDLPGIDPHSKRRRSRRGAWRDGLADQTVVRTLAGC |
Ga0306924_100985804 | 3300032076 | Soil | MWRPNEPVEEDVSNLPGIDPHSKRRRSRRRAWRDGLADQTVVK |
Ga0318518_102540872 | 3300032090 | Soil | MTMWRPAKPTEEDVWNLPGIDPHGKRHRSRRRAWRDGLADQTVV |
Ga0318577_100992271 | 3300032091 | Soil | MTMWRPTEPAKEDVARLPGIDPRGKRRRPRRRAWRDGLADQTVVQT |
Ga0318519_106439381 | 3300033290 | Soil | MWRPNEPIGENVSDVPGIDPQSKRRRSRHRAWRDGLADQTVVKTLENVRSYRS |
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