Metagenome / Metatranscriptome Family F074564

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F074564
Family Type	Metagenome / Metatranscriptome
Number of Sequences	119
Average Sequence Length	45 residues
Representative Sequence	NLGQVAFVNSVIQPIATSWSNWSHDPNALEGARLQLGQQLHQLSPP
Number of Associated Samples	86
Number of Associated Scaffolds	119

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	97.48 %
% of genes from short scaffolds (< 2000 bps)	79.83 %
Associated GOLD sequencing projects	77
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.53

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (93.277 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (57.143 % of family members)
Environment Ontology (ENVO)	Unclassified (50.420 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (57.983 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 48.65% β-sheet: 0.00% Coil/Unstructured: 51.35%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.53
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.53
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 119 Family Scaffolds
PF13738	Pyr_redox_3	11.76
PF07992	Pyr_redox_2	8.40
PF01261	AP_endonuc_2	1.68
PF03575	Peptidase_S51	1.68
PF13313	DUF4082	1.68
PF02481	DNA_processg_A	0.84
PF02786	CPSase_L_D2	0.84
PF13927	Ig_3	0.84
PF02357	NusG	0.84
PF00990	GGDEF	0.84
PF10944	DUF2630	0.84
PF04542	Sigma70_r2	0.84
PF16657	Malt_amylase_C	0.84
PF07238	PilZ	0.84
PF00535	Glycos_transf_2	0.84
PF12729	4HB_MCP_1	0.84
PF13320	DUF4091	0.84
PF01522	Polysacc_deac_1	0.84

COG ID	Name	Functional Category	% Frequency in 119 Family Scaffolds
COG0758	Predicted Rossmann fold nucleotide-binding protein DprA/Smf involved in DNA uptake	Replication, recombination and repair [L]	1.68
COG0250	Transcription termination/antitermination protein NusG	Transcription [K]	0.84
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	0.84
COG0726	Peptidoglycan/xylan/chitin deacetylase, PgdA/NodB/CDA1 family	Cell wall/membrane/envelope biogenesis [M]	0.84
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	0.84
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	0.84
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	0.84

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	93.28 %
Unclassified	root	N/A	6.72 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	93.28 %
Unclassified	root	N/A	6.72 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	93.28 %
Unclassified	root	N/A	6.72 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	21.85 %
Unclassified	root	N/A	6.72 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	7.56 %
Unclassified	root	N/A	6.72 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.84 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7.56 %
Unclassified	root	N/A	6.72 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	0.84 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7.56 %
Unclassified	root	N/A	6.72 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.84 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7.56 %
Unclassified	root	N/A	6.72 %
unclassified Acidobacteriaceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae	0.84 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7.56 %
Unclassified	root	N/A	6.72 %
Acidobacteriaceae bacterium KBS 89	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium KBS 89	0.84 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001593\|JGI12635J15846_10220903	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1237	Open in IMG/M
3300001661\|JGI12053J15887_10614008	All Organisms → cellular organisms → Bacteria → Acidobacteria	517	Open in IMG/M
3300002245\|JGIcombinedJ26739_101763506	All Organisms → cellular organisms → Bacteria	519	Open in IMG/M
3300002907\|JGI25613J43889_10071553	All Organisms → cellular organisms → Bacteria → Acidobacteria	939	Open in IMG/M
3300005437\|Ga0070710_11301790	All Organisms → cellular organisms → Bacteria → Acidobacteria	540	Open in IMG/M
3300005541\|Ga0070733_10849633	All Organisms → cellular organisms → Bacteria	613	Open in IMG/M
3300005542\|Ga0070732_10991983	All Organisms → cellular organisms → Bacteria	514	Open in IMG/M
3300005586\|Ga0066691_10431828	All Organisms → cellular organisms → Bacteria	785	Open in IMG/M
3300005587\|Ga0066654_10206629	All Organisms → cellular organisms → Bacteria	1022	Open in IMG/M
3300006162\|Ga0075030_100203119	All Organisms → cellular organisms → Bacteria	1595	Open in IMG/M
3300006804\|Ga0079221_10032323	All Organisms → cellular organisms → Bacteria	2228	Open in IMG/M
3300006806\|Ga0079220_10160028	All Organisms → cellular organisms → Bacteria	1254	Open in IMG/M
3300007255\|Ga0099791_10030495	All Organisms → cellular organisms → Bacteria	2366	Open in IMG/M
3300007255\|Ga0099791_10480495	All Organisms → cellular organisms → Bacteria	602	Open in IMG/M
3300007258\|Ga0099793_10023214	All Organisms → cellular organisms → Bacteria	2567	Open in IMG/M
3300007258\|Ga0099793_10236847	All Organisms → cellular organisms → Bacteria	879	Open in IMG/M
3300007265\|Ga0099794_10339148	All Organisms → cellular organisms → Bacteria	781	Open in IMG/M
3300007265\|Ga0099794_10489411	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	647	Open in IMG/M
3300007265\|Ga0099794_10561468	All Organisms → cellular organisms → Bacteria	603	Open in IMG/M
3300007788\|Ga0099795_10659018	All Organisms → cellular organisms → Bacteria	501	Open in IMG/M
3300009088\|Ga0099830_10577749	All Organisms → cellular organisms → Bacteria	921	Open in IMG/M
3300009090\|Ga0099827_11849106	All Organisms → cellular organisms → Bacteria	526	Open in IMG/M
3300010159\|Ga0099796_10399480	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	602	Open in IMG/M
3300010360\|Ga0126372_12773249	All Organisms → cellular organisms → Bacteria	542	Open in IMG/M
3300010362\|Ga0126377_12623267	All Organisms → cellular organisms → Bacteria → Acidobacteria	579	Open in IMG/M
3300010376\|Ga0126381_100402772	All Organisms → cellular organisms → Bacteria	1906	Open in IMG/M
3300010398\|Ga0126383_12535056	All Organisms → cellular organisms → Bacteria	597	Open in IMG/M
3300011269\|Ga0137392_11272376	All Organisms → cellular organisms → Bacteria	594	Open in IMG/M
3300012096\|Ga0137389_10426210	All Organisms → cellular organisms → Bacteria	1134	Open in IMG/M
3300012096\|Ga0137389_10855123	All Organisms → cellular organisms → Bacteria	781	Open in IMG/M
3300012189\|Ga0137388_11285049	All Organisms → cellular organisms → Bacteria	670	Open in IMG/M
3300012189\|Ga0137388_11302124	All Organisms → cellular organisms → Bacteria	665	Open in IMG/M
3300012199\|Ga0137383_10583088	All Organisms → cellular organisms → Bacteria → Acidobacteria	818	Open in IMG/M
3300012200\|Ga0137382_10960420	All Organisms → cellular organisms → Bacteria → Acidobacteria	614	Open in IMG/M
3300012202\|Ga0137363_10027047	All Organisms → cellular organisms → Bacteria	3921	Open in IMG/M
3300012202\|Ga0137363_10209001	All Organisms → cellular organisms → Bacteria → Acidobacteria	1569	Open in IMG/M
3300012202\|Ga0137363_10435747	All Organisms → cellular organisms → Bacteria	1095	Open in IMG/M
3300012202\|Ga0137363_10980112	All Organisms → cellular organisms → Bacteria	718	Open in IMG/M
3300012205\|Ga0137362_10894627	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	758	Open in IMG/M
3300012208\|Ga0137376_10423685	All Organisms → cellular organisms → Bacteria	1156	Open in IMG/M
3300012209\|Ga0137379_11147856	All Organisms → cellular organisms → Bacteria	683	Open in IMG/M
3300012351\|Ga0137386_10159634	All Organisms → cellular organisms → Bacteria → Acidobacteria	1614	Open in IMG/M
3300012357\|Ga0137384_11286247	All Organisms → cellular organisms → Bacteria	578	Open in IMG/M
3300012359\|Ga0137385_10540464	All Organisms → cellular organisms → Bacteria	984	Open in IMG/M
3300012363\|Ga0137390_11265734	All Organisms → cellular organisms → Bacteria	684	Open in IMG/M
3300012582\|Ga0137358_10031840	All Organisms → cellular organisms → Bacteria	3463	Open in IMG/M
3300012683\|Ga0137398_10019895	All Organisms → cellular organisms → Bacteria	3626	Open in IMG/M
3300012683\|Ga0137398_10604119	All Organisms → cellular organisms → Bacteria	759	Open in IMG/M
3300012685\|Ga0137397_10025441	All Organisms → cellular organisms → Bacteria	4191	Open in IMG/M
3300012685\|Ga0137397_10233360	All Organisms → cellular organisms → Bacteria	1370	Open in IMG/M
3300012923\|Ga0137359_10004781	All Organisms → cellular organisms → Bacteria	11131	Open in IMG/M
3300012923\|Ga0137359_10697494	All Organisms → cellular organisms → Bacteria	885	Open in IMG/M
3300012923\|Ga0137359_11333961	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	605	Open in IMG/M
3300012924\|Ga0137413_10124533	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1647	Open in IMG/M
3300012924\|Ga0137413_11635198	Not Available	527	Open in IMG/M
3300012925\|Ga0137419_10672593	All Organisms → cellular organisms → Bacteria	837	Open in IMG/M
3300012925\|Ga0137419_10895631	All Organisms → cellular organisms → Bacteria → Acidobacteria	730	Open in IMG/M
3300012925\|Ga0137419_11261292	All Organisms → cellular organisms → Bacteria → Acidobacteria	620	Open in IMG/M
3300012929\|Ga0137404_10000560	All Organisms → cellular organisms → Bacteria	24327	Open in IMG/M
3300012929\|Ga0137404_11550811	Not Available	614	Open in IMG/M
3300012929\|Ga0137404_11571372	All Organisms → cellular organisms → Bacteria	610	Open in IMG/M
3300012930\|Ga0137407_12033764	All Organisms → cellular organisms → Bacteria	548	Open in IMG/M
3300012944\|Ga0137410_10324601	All Organisms → cellular organisms → Bacteria	1224	Open in IMG/M
3300012944\|Ga0137410_10700624	All Organisms → cellular organisms → Bacteria	844	Open in IMG/M
3300015052\|Ga0137411_1296755	All Organisms → cellular organisms → Bacteria	2163	Open in IMG/M
3300015054\|Ga0137420_1124881	All Organisms → cellular organisms → Bacteria → Acidobacteria	1350	Open in IMG/M
3300015054\|Ga0137420_1132952	All Organisms → cellular organisms → Bacteria → Acidobacteria	1324	Open in IMG/M
3300015054\|Ga0137420_1178028	All Organisms → cellular organisms → Bacteria	1176	Open in IMG/M
3300015241\|Ga0137418_10000643	All Organisms → cellular organisms → Bacteria → Acidobacteria	31434	Open in IMG/M
3300015241\|Ga0137418_10003198	All Organisms → cellular organisms → Bacteria	15066	Open in IMG/M
3300015242\|Ga0137412_10039511	All Organisms → cellular organisms → Bacteria	3854	Open in IMG/M
3300015242\|Ga0137412_10228949	All Organisms → cellular organisms → Bacteria	1476	Open in IMG/M
3300015264\|Ga0137403_10992338	All Organisms → cellular organisms → Bacteria	687	Open in IMG/M
3300020170\|Ga0179594_10161274	All Organisms → cellular organisms → Bacteria	832	Open in IMG/M
3300020199\|Ga0179592_10053717	All Organisms → cellular organisms → Bacteria	1833	Open in IMG/M
3300020579\|Ga0210407_10411912	All Organisms → cellular organisms → Bacteria	1057	Open in IMG/M
3300021046\|Ga0215015_10512822	All Organisms → cellular organisms → Bacteria	3523	Open in IMG/M
3300021086\|Ga0179596_10096154	All Organisms → cellular organisms → Bacteria → Acidobacteria	1337	Open in IMG/M
3300021170\|Ga0210400_10028737	All Organisms → cellular organisms → Bacteria	4316	Open in IMG/M
3300021170\|Ga0210400_10218550	All Organisms → cellular organisms → Bacteria	1552	Open in IMG/M
3300021170\|Ga0210400_10302870	All Organisms → cellular organisms → Bacteria	1312	Open in IMG/M
3300021180\|Ga0210396_10654289	All Organisms → cellular organisms → Bacteria	910	Open in IMG/M
3300021432\|Ga0210384_10499910	All Organisms → cellular organisms → Bacteria	1094	Open in IMG/M
3300021475\|Ga0210392_10396049	All Organisms → cellular organisms → Bacteria	1005	Open in IMG/M
3300022528\|Ga0242669_1085284	All Organisms → cellular organisms → Bacteria	592	Open in IMG/M
3300024251\|Ga0247679_1001879	All Organisms → cellular organisms → Bacteria	3712	Open in IMG/M
3300024288\|Ga0179589_10415834	All Organisms → cellular organisms → Bacteria → Acidobacteria	617	Open in IMG/M
3300024330\|Ga0137417_1001412	All Organisms → cellular organisms → Bacteria	979	Open in IMG/M
3300024330\|Ga0137417_1141054	Not Available	1156	Open in IMG/M
3300024330\|Ga0137417_1240691	All Organisms → cellular organisms → Bacteria	876	Open in IMG/M
3300024330\|Ga0137417_1451919	All Organisms → cellular organisms → Bacteria	1719	Open in IMG/M
3300024331\|Ga0247668_1031793	All Organisms → cellular organisms → Bacteria	1082	Open in IMG/M
3300026285\|Ga0209438_1006671	All Organisms → cellular organisms → Bacteria	3903	Open in IMG/M
3300026285\|Ga0209438_1094776	All Organisms → cellular organisms → Bacteria	922	Open in IMG/M
3300026328\|Ga0209802_1321966	All Organisms → cellular organisms → Bacteria	511	Open in IMG/M
3300026355\|Ga0257149_1063839	All Organisms → cellular organisms → Bacteria	537	Open in IMG/M
3300026515\|Ga0257158_1033914	All Organisms → cellular organisms → Bacteria	906	Open in IMG/M
3300026515\|Ga0257158_1048994	Not Available	777	Open in IMG/M
3300026538\|Ga0209056_10090300	All Organisms → cellular organisms → Bacteria	2541	Open in IMG/M
3300026557\|Ga0179587_10795483	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	623	Open in IMG/M
3300027603\|Ga0209331_1066147	All Organisms → cellular organisms → Bacteria	904	Open in IMG/M
3300027616\|Ga0209106_1030454	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1190	Open in IMG/M
3300027645\|Ga0209117_1190538	All Organisms → cellular organisms → Bacteria	520	Open in IMG/M
3300027669\|Ga0208981_1005015	All Organisms → cellular organisms → Bacteria	3273	Open in IMG/M
3300027674\|Ga0209118_1029430	All Organisms → cellular organisms → Bacteria	1692	Open in IMG/M
3300027678\|Ga0209011_1011851	All Organisms → cellular organisms → Bacteria	2907	Open in IMG/M
3300027857\|Ga0209166_10528764	All Organisms → cellular organisms → Bacteria → Acidobacteria	604	Open in IMG/M
3300027911\|Ga0209698_10249956	All Organisms → cellular organisms → Bacteria	1417	Open in IMG/M
3300028536\|Ga0137415_10032492	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium KBS 89	5131	Open in IMG/M
3300030991\|Ga0073994_10076246	Not Available	736	Open in IMG/M
3300031715\|Ga0307476_10402196	All Organisms → cellular organisms → Bacteria	1011	Open in IMG/M
3300031720\|Ga0307469_11004946	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	779	Open in IMG/M
3300031740\|Ga0307468_102251186	All Organisms → cellular organisms → Bacteria	528	Open in IMG/M
3300031754\|Ga0307475_11227885	All Organisms → cellular organisms → Bacteria	583	Open in IMG/M
3300031823\|Ga0307478_11809700	All Organisms → cellular organisms → Bacteria	502	Open in IMG/M
3300031962\|Ga0307479_12003766	All Organisms → cellular organisms → Bacteria	528	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	98.32%
Aquatic	Environmental → Aquatic	1.68%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	98.32%
Sediment	Environmental → Aquatic → Sediment	1.68%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	89.92%
Loam	Environmental → Terrestrial → Soil → Loam	8.40%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.68%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	65.55%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	16.81%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	7.56%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.88%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.68%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.68%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.84%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	57.14%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	11.76%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	7.56%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	5.04%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	5.04%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.36%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	2.52%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.52%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.68%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.68%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.84%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.84%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300002907	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005586	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140	Environmental	Open in IMG/M
3300005587	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103	Environmental	Open in IMG/M
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300010159	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300015052	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015054	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300020170	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300021046	Soil microbial communities from Shale Hills CZO, Pennsylvania, United States - 90cm depth	Environmental	Open in IMG/M
3300021086	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300022528	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300024251	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK20	Environmental	Open in IMG/M
3300024288	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal	Environmental	Open in IMG/M
3300024330	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300024331	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK09	Environmental	Open in IMG/M
3300026285	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cm (SPAdes)	Environmental	Open in IMG/M
3300026328	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129 (SPAdes)	Environmental	Open in IMG/M
3300026355	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-02-A	Environmental	Open in IMG/M
3300026515	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-03-A	Environmental	Open in IMG/M
3300026538	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027603	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027616	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_M3 (SPAdes)	Environmental	Open in IMG/M
3300027645	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2 (SPAdes)	Environmental	Open in IMG/M
3300027669	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_M1 (SPAdes)	Environmental	Open in IMG/M
3300027674	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M1 (SPAdes)	Environmental	Open in IMG/M
3300027678	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M3 (SPAdes)	Environmental	Open in IMG/M
3300027857	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300030991	Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Soil GP-1A (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12635J15846_102209032	3300001593	Forest Soil	ISVVDTTLLPIATSWSNWNHSPKALENARTQLGQLLHQLAPSGL*
JGI12053J15887_106140081	3300001661	Forest Soil	ANSAIQPIAASWSNWSHDPNALESARLQLGQQLNLLSPP*
JGIcombinedJ26739_1017635061	3300002245	Forest Soil	FANSTLQPIARNWSNWSHDQNALEGARLQLGRKLNQLCPP*
JGI25613J43889_100715532	3300002907	Grasslands Soil	KNLGQAAFANSVIQPIATSWTHWTHDPNALTAARMQLGQKLNQLSLHM*
Ga0070710_113017902	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	AQILHNLGQDSFVNSTILPLATSWTKWKNDAAALENARLQLGQMLNQLSPP*
Ga0070733_108496332	3300005541	Surface Soil	EYAQMLKNLGQLGVVDSTLLPIATSWSNWSHDPNALQNARTALGQLLHQLAP*
Ga0070732_109919831	3300005542	Surface Soil	KNLGQVPLVNSILQPIGVSWSNWSHDPNALEGARQQLGQQLHLLAP*
Ga0066691_104318281	3300005586	Soil	FVNSTILPIAASWNNWSHDPNALEAARLQLGQKLNQLSPP*
Ga0066654_102066291	3300005587	Soil	GQSNFLNAVIQPIATSWTNWSQNPSALENARLQLGQQLNKLSPP*
Ga0075030_1002031193	3300006162	Watersheds	VVDSTLLPIATSWSNWNHDPNALQNARTQLGQLLHQLAP*
Ga0079221_100323231	3300006804	Agricultural Soil	DFVNSVIQPIATSWINWSHDPAALEDARLQLGQQLNRLSPP*
Ga0079220_101600281	3300006806	Agricultural Soil	QDYEYAHKLNSLGQPSLLNSAVAPIATSWTSWTHDPNALENARQQLGQLLHQLAP*
Ga0099791_100304951	3300007255	Vadose Zone Soil	IIVPIATSWSNWNHNPNALEAARLQLGQQLHLLAP*
Ga0099791_104804952	3300007255	Vadose Zone Soil	IIVPIATSWSNWSHDPNALEAARLHLGQQLHLLAP*
Ga0099793_100232144	3300007258	Vadose Zone Soil	GQLSVVDSTVLPIAGSWSNWKRDPNALQNARATLGQLLHQLAP*
Ga0099793_102368471	3300007258	Vadose Zone Soil	VNSTVLPIAASWNNWSRDPNALEAVRLQLGQLLHQLAP*
Ga0099794_103391481	3300007265	Vadose Zone Soil	YVQILKNLGQVSFVDPIIVPIATSFTNWTHNPSALENARQQLGQQLHLLHP*
Ga0099794_104894112	3300007265	Vadose Zone Soil	YAQILKNLGQVPFVNSAILPIATSWSNWSHDPNALEGARLQLGQQLNQLSPP*
Ga0099794_105614682	3300007265	Vadose Zone Soil	SIIVPIATSWSNWNHDPNALEAARLQLGQRLHQLSPP*
Ga0099795_106590182	3300007788	Vadose Zone Soil	KNVGQVPFVNSTILPIATSWSNWSHDPNALEAARLQLGQKLNQLSPP*
Ga0099830_105777492	3300009088	Vadose Zone Soil	DYEYAKILTNLGQVAFTYSIIMPIATSWTNWSNDPNVLERARLQLGQQLHQLSPP*
Ga0099827_118491062	3300009090	Vadose Zone Soil	QILKNVGQVPFVNSTILPIATSWSNWSHDPNALEAARQQLGQKLNQLSPP*
Ga0099796_103994802	3300010159	Vadose Zone Soil	EYAHMLKNLAQLPVLDAAILPIATSWTNWSHDPTALQNVRAQLGQLLHHLAP*
Ga0126372_127732491	3300010360	Tropical Forest Soil	YVNSVIVPIATSWTNWSHDPTSLENGRQQLGQQLHQLSPP*
Ga0126377_126232671	3300010362	Tropical Forest Soil	ILENLGQGAFLNSVFSPIATSWTNWTHDTSALENARLQLGQQLNNLSPP*
Ga0126381_1004027721	3300010376	Tropical Forest Soil	ILKNQGQLTFLNLIVVPIATSWTNWTHSTTTLENVRQQLGQQLHLLAPPGF*
Ga0126381_1022250672	3300010376	Tropical Forest Soil	LPIAGNWTNWTHDPKALEDARMQLGQELNQLSAP*
Ga0126381_1027977381	3300010376	Tropical Forest Soil	LPIAGNWTNWTHDPKALEDARMQLGQELNQLSHP*
Ga0126383_125350561	3300010398	Tropical Forest Soil	QSNFLNSVIQPIATSWINWSQDPGALENARLQLGQQLHKLSPP*
Ga0137392_112723761	3300011269	Vadose Zone Soil	VPIAASWSNWSHNPTALEAARLQLGQQLHQLAPPGL*
Ga0137389_104262101	3300012096	Vadose Zone Soil	LGQVPFVNSIIVPIASSWSNWSQDPNALEGARLQLGQQLHQLAPPGL*
Ga0137389_108551231	3300012096	Vadose Zone Soil	GQVPFVNSIVQPIATSWSNWSHDPNALEGARLKLGQQLHQLSTP*
Ga0137388_112850492	3300012189	Vadose Zone Soil	AQILKNLAQVPFVNSVLQTIAASWSNWSHDPNALEAARLQLGQLLHQLAP*
Ga0137388_113021241	3300012189	Vadose Zone Soil	NLGQIPFVNSVLQSIATSWTNWSHDPNALEGARLQLGQLLHQLSPP*
Ga0137383_105830881	3300012199	Vadose Zone Soil	DYEYAQILKNLGQIPFLNIAILPIATSWSNWSHDLNALESVRLQLGQLLSQLSPP*
Ga0137382_109604201	3300012200	Vadose Zone Soil	LGQVAFANSTIQPIATSWSNWSHDPNALENARLQLGQQLNLLSPP*
Ga0137363_100270471	3300012202	Vadose Zone Soil	NLGQVAFVNSVIQPIATSWSNWSHDPNALEGARLQLGQQLHQLSPP*
Ga0137363_102090014	3300012202	Vadose Zone Soil	YEYAQILRNLGQDAFVNSTIQPLATSWTNWKNDPNAMESARIQLGQMLNQLSPP*
Ga0137363_104357471	3300012202	Vadose Zone Soil	PLVNSIIVPIATSWSNWNHNPNALEAARLQLGQQLHLLAP*
Ga0137363_109801121	3300012202	Vadose Zone Soil	ILKNLGQVGLVNSILQPIATSWSNWSHDPSALENARLQLGRQLSQLSPQ*
Ga0137362_108946271	3300012205	Vadose Zone Soil	LPVLDAAILPIATSWTNWSHDPNALQNARKQLGQLLHQLAP*
Ga0137376_104236851	3300012208	Vadose Zone Soil	VPSLNIAILPIATSWSNWSHDPNALEGARQQLGQLLHQLSPP*
Ga0137379_111478562	3300012209	Vadose Zone Soil	VNSVLQPIAASWSNWSHDPNALEGARLQLGQLLHQLAP*
Ga0137386_101596341	3300012351	Vadose Zone Soil	YAQILKNLGQISLVNSIVPPIATNWANWSHDPDALESARLQLGQLLNQLSPP*
Ga0137384_112862472	3300012357	Vadose Zone Soil	LGQTSFTSSVIQTIATSWNNWTHYPSALQTARDQLGQLLNQLSPP*
Ga0137385_105404641	3300012359	Vadose Zone Soil	LKNLGQLTFLDPIILPIATNWTNWSHSPTTLEGARLQLGQQLNLLAPPGF*
Ga0137390_112657341	3300012363	Vadose Zone Soil	AFVNPIIQPIAASWSNWNHNPNALEGARLQLGQQLHQLGP*
Ga0137358_100318404	3300012582	Vadose Zone Soil	IVPIATSWSNWNHNPNALEAARLQLGQQLHLLAP*
Ga0137398_100198954	3300012683	Vadose Zone Soil	LSPVPIVNSILQPVATSWSNWSHDPNALEAARLQLGQRLNVLFNH*
Ga0137398_106041191	3300012683	Vadose Zone Soil	NLGQAAFVNSVIQPIATSWSNWTHDPNTLEGARLQLGQQLHQLSPP*
Ga0137397_100254415	3300012685	Vadose Zone Soil	KNLGQLNVVNTHLLPIAASWSNWSRDPNTLENARLQLGQLLHQLAP*
Ga0137397_102333602	3300012685	Vadose Zone Soil	AQILKNLGRISTVDTALLPIAGSWSNWSHDPNALQNARTQLGQLLHQLAP*
Ga0137359_1000478110	3300012923	Vadose Zone Soil	LSILNTAITPVAGSWTSWTKDPNALESARQQLGQLLHQLAP*
Ga0137359_106974941	3300012923	Vadose Zone Soil	LNVVNTNLLPIAGSWSNWSHDPNALESARQQLGQLLHQLAP*
Ga0137359_113339612	3300012923	Vadose Zone Soil	FVNSAILPIATSWSNWSHDPNALEGARLQLGQQLNQLSPP*
Ga0137413_101245331	3300012924	Vadose Zone Soil	AILPIATSWSNWSHDPNALEAARLKLGQLLNQLSPP*
Ga0137413_116351981	3300012924	Vadose Zone Soil	YAHMLKNLGQLSVVDSTVLPIAGSWSNWSHDPNLLQNVRTQLGQLLHQLAP*
Ga0137419_106725931	3300012925	Vadose Zone Soil	SLNIAILPIATSWSNWSHDPNALEGARQQLGQLLHQLSLP*
Ga0137419_108956312	3300012925	Vadose Zone Soil	GIQDYEYAQILRNLGQDAFVNSTIQPLATSWTNWKNDPNAVESARIQLGQMLNQLSPP*
Ga0137419_112612922	3300012925	Vadose Zone Soil	DYVQILKNLGQVGFANSAIQPIATSWSNWSHDPNALEAARLQLGQQLNLLSPP*
Ga0137404_1000056021	3300012929	Vadose Zone Soil	NQLSILNTAITPVAGSWTSWTKDPNALESARQQLGQLLHQLAP*
Ga0137404_115508111	3300012929	Vadose Zone Soil	NLGQIPFLNIAILPIATSWSNWSHDLNALESVRLQLGQLLSQLSPP*
Ga0137404_115713721	3300012929	Vadose Zone Soil	ILKNVGQVPFVNSTVLPIAASWNNWSRDPNPLEAVRLQLGQLLHQLAP*
Ga0137407_120337642	3300012930	Vadose Zone Soil	LNGLGQTAFVNSVIQPIASGWGNWTHDPNALEAARLQLGQKLSLLGP*
Ga0137410_103246011	3300012944	Vadose Zone Soil	LVNSIIVPIATSWSNWNHNPNALEAARLQLGQQLHLLAP*
Ga0137410_107006241	3300012944	Vadose Zone Soil	THLLPIAASWSNWSHDPNALESARLQLGQLLHQLAP*
Ga0137411_12967554	3300015052	Vadose Zone Soil	QILKNLGQVPFLDPILLPIAASWSNWNHSPITLEGARLQLGQQLNLLAPPGF*
Ga0137420_11248811	3300015054	Vadose Zone Soil	PFVNSAIQPIATSWSNWSHDPNALEGARVQLGQQLNQQLGQQLNQLSPP*
Ga0137420_11329523	3300015054	Vadose Zone Soil	VNSAILPIATSWSNWSHDPNALEGARVQLGQQLNQLSPP*
Ga0137420_11780282	3300015054	Vadose Zone Soil	QDYEYAQMLKKLGQLGVVDSTLLPVATSWSNWSHDPNALENARTQLGQLLHQLAP*
Ga0137418_1000064323	3300015241	Vadose Zone Soil	MLKNLGQLSVVDSTVLPIAGSWSNWNRDPNALQNARATLGQLLHQLAP*
Ga0137418_1000319813	3300015241	Vadose Zone Soil	MLKNLGQLSVVDSTVLPIAGSWSNWSHDPNLLQNVRTQLGQLLHQLAP*
Ga0137412_100395115	3300015242	Vadose Zone Soil	AQILKNVGQVPFVNSTIVPIAASWSNWSHDPNALEAARLQLGQLLHQLAP*
Ga0137412_102289492	3300015242	Vadose Zone Soil	AQILKNVGQVPFVNSTIVPIAASWSNWSHDPNALEAARLQLGQKLNQLSPP*
Ga0137403_109923381	3300015264	Vadose Zone Soil	NVGQVPFVNSTVLPIAASWNNWSRDPNPLEAVRLQLGQLLHQLAP*
Ga0179594_101612742	3300020170	Vadose Zone Soil	QTTFLNSVILPIATSWTDWTHDVNALESARLQLGQQLNQLAPP
Ga0179592_100537171	3300020199	Vadose Zone Soil	DYEYAQILKNVGQVPFVNSTILPIATSWNNWSHDPNALEAARLQLGQLLHQLAP
Ga0210407_104119122	3300020579	Soil	LKSLGQLGVVDTTLLPIATSWSNWNHDPNALENARTQLGQLLHQLAP
Ga0215015_105128221	3300021046	Soil	IQPIAASWSNWNHNPNTLEAARLHMGQQLHQLSPQ
Ga0179596_100961544	3300021086	Vadose Zone Soil	GFANSAIQPIATSWSNWSHDPNALENARLQLGQQLNLLSPP
Ga0210400_100287375	3300021170	Soil	LKNLGQVSFVNSIIQPIATSWSNWNHDPNALEGARLKLGQQLHQLSTP
Ga0210400_102185503	3300021170	Soil	YEYAQILKNLGQVPFLNSIIVPIATSWTNWSHDPTALDNARQQLGQELHLLAP
Ga0210400_103028701	3300021170	Soil	KSLGQVAFANSTLQPIAKNWSNWSHDQNALEGARLQLGRKLNQLCPP
Ga0210396_106542891	3300021180	Soil	VQMLKNLGQLGTVDTTLLPIATSWSNWSHDPNALLNARTQLGQLLHQLAP
Ga0210384_104999101	3300021432	Soil	YEYAQILKNLGQLGLVDTTLLPIATSWSNWNHDPNALENARTQLGQLLHQLAP
Ga0210392_103960492	3300021475	Soil	NLGQLGVVDSTLLPIATSWSNWSHDPNALQNARTALGQLLHQLAP
Ga0242669_10852841	3300022528	Soil	QLSVVDNALLPIATSWSNWSHDPNALQNARTQLGQLLHQLAP
Ga0247679_10018791	3300024251	Soil	AQILKSLGQSAFTNSVVQPIATSWTNWTHDPSAVEAARQQLGQRLDQLSPP
Ga0179589_104158343	3300024288	Vadose Zone Soil	QDYEYAQILRNLGQDAFVNSTIQPLATSWTNWKNDPNAMESARIQLGQMLNQLSPP
Ga0137417_10014122	3300024330	Vadose Zone Soil	ILKNLGQVPFVNSIIVPIATSWSNWSHDPNALENARLQLGQQLHLLAP
Ga0137417_11410541	3300024330	Vadose Zone Soil	LKNLGQVPFVVNSIIVPIATSWSNWSHDPNALENARLQLGQQLHLLAP
Ga0137417_12406912	3300024330	Vadose Zone Soil	QILKNLGQVAFANSTIQPIATSWSNWSHDPNALESARLKLGQLLNQLSPP
Ga0137417_14519191	3300024330	Vadose Zone Soil	FAFVNSVIQPIATSWSNWSHDPNALEGARLQLGQQLHQLSPP
Ga0247668_10317932	3300024331	Soil	LNVVNTNLLPIAASWSNWSHDPNTLENARLQLGQLLHQLAP
Ga0209438_10066711	3300026285	Grasslands Soil	NSVIQPIATSWSNWSHDPNALEGARLQLGQQLHQLSPP
Ga0209438_10947762	3300026285	Grasslands Soil	VGQVPFVNSTILPIAASWNNWSHDPNALEAARLQLGQLLHQLAP
Ga0209802_13219661	3300026328	Soil	LKNLGQAPLVNSIIVPVATSWSNWNHNPNALEAARLQLGQQLHLLAP
Ga0257149_10638392	3300026355	Soil	IIVPIATSWSNWSHDPNALEAARLQLGQQLHLLSPPGL
Ga0257158_10339141	3300026515	Soil	AQILKNLGQVPFVNSAILPIATSWSNWSHDPNALENARVQLGQLLNQLSPP
Ga0257158_10489942	3300026515	Soil	NTLLPIATSWSNWNHDPNALENARTQLGQLLHQLAP
Ga0209056_100903003	3300026538	Soil	QILKNLGQEDFTNSIIVPIATSWTNWSHDPNALETARLQLGQQLHQLSTP
Ga0179587_100435631	3300026557	Vadose Zone Soil	SSVIQPIAASWTNWTHDPNALEGARLQLGQKLNQLAP
Ga0179587_107954831	3300026557	Vadose Zone Soil	VNSAILPIATSWSNWSHDPNALEGARLQLGQQLNQLSPP
Ga0209331_10661471	3300027603	Forest Soil	FVNSIIQPIATSWTNWNHDPNALEGARLKLGQQLHQLSTP
Ga0209106_10304541	3300027616	Forest Soil	KNLGQVPSLNIAILPIATSWSNWSHDPNALEAARLKLGQLLNQLSPP
Ga0209117_11905382	3300027645	Forest Soil	KNLGQVAFVNSVIQPIATSWSNWTHDPNALEGARLQLGQQLHQLSPP
Ga0208981_10050154	3300027669	Forest Soil	QILKNLGQVAFANSTIQPIATSWSNWSHDPNALENARLQLGQLLNQLSPP
Ga0209118_10294301	3300027674	Forest Soil	LKNLGQVPLANSIVVPIATSWSNWTQNPITLEGARLQLGQQLHLLAPPGF
Ga0209011_10118511	3300027678	Forest Soil	GAFASSVIQPIAASWSNWTHDPNALEGARLQLGQKLNQLAP
Ga0209166_105287641	3300027857	Surface Soil	SLGQLSFVNSIVLPVATSWTNWTHDPNALVNVRQQLGQQLHLLAP
Ga0209698_102499561	3300027911	Watersheds	VVDSTLLPIATSWSNWNHDPNALQNARTQLGQLLHQLAP
Ga0137415_100324925	3300028536	Vadose Zone Soil	DYEYAQILKNLGQVPLVNSIIVPIATSWSNWSHDPNALEAARLQLGQQLHLLAP
Ga0073994_100762461	3300030991	Soil	GQGAFASSVIQPIAASWSNWTHDPNALEGARLQLGQKLNQLAP
Ga0307476_104021961	3300031715	Hardwood Forest Soil	FLNPIILPIAASWTNWTHSAAALEGARLQLGQQLHLLAPPGF
Ga0307469_110049462	3300031720	Hardwood Forest Soil	TTFLNSVIVPIATSWTNWTHDVNALESARLQLGQQLHQIAPP
Ga0307468_1022511862	3300031740	Hardwood Forest Soil	VDTTLLPIATSWSNWSHDPNALQNARTQLGQLLQQLAP
Ga0307475_112278851	3300031754	Hardwood Forest Soil	DSTLLPIATSWSNWSHDPNALQNARTQLGQLLHQLAP
Ga0307478_118097001	3300031823	Hardwood Forest Soil	AQILKNFGQVPFVTSVIQPIATSWTNWSHDPSDLDAARLQLGQKIHQVSTP
Ga0307479_120037661	3300031962	Hardwood Forest Soil	FVSSVIRPIATSWTNWSYDPNALQAARQQLGQRLNQLAPP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F074564

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences