Metagenome / Metatranscriptome Family F074499

Basic Information
Family ID	F074499
Family Type	Metagenome / Metatranscriptome
Number of Sequences	119
Average Sequence Length	43 residues
Representative Sequence	QVLFDAQKGYTYDEVSVPPRVSDIRGVIQQLDDSIGAVLGS
Number of Associated Samples	79
Number of Associated Scaffolds	119

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	50.00 %
% of genes near scaffold ends (potentially truncated)	1.68 %
% of genes from short scaffolds (< 2000 bps)	3.36 %
Associated GOLD sequencing projects	71
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.51

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Unclassified (98.319 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous (24.370 % of family members)
Environment Ontology (ENVO)	Unclassified (42.017 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (59.664 % of family members)

Multiple Sequence Alignments

Select alignment to view:

Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62. 1JGIcombinedJ13530_1100555342 2WOR8_1003153014 3GOS2236_10627241 4B570J29579_1005616 5Ga0065166_103165432 6Ga0068876_102252581 7Ga0068872_101300291 8Ga0066377_102588601 9Ga0075479_104059822 10Ga0075472_100923131 11Ga0099851_11534862 12Ga0099851_11541731 13Ga0099851_12428682 14Ga0099851_12596571 15Ga0099849_10504181 16Ga0099849_10987824 17Ga0099849_11793982 18Ga0099849_12646552 19Ga0099849_13121451 20Ga0099848_10223521 21Ga0099848_10352564 22Ga0099848_10642474 23Ga0099848_11413181 24Ga0099848_13028252 25Ga0099848_13166651 26Ga0099848_13332863 27Ga0099846_10534041 28Ga0102920_12352121 29Ga0102896_11993313 30Ga0102871_100227611 31Ga0102895_10934793 32Ga0102902_11642353 33Ga0099850_10707541 34Ga0099850_12131881 35Ga0114350_10221054 36Ga0102831_12937973 37Ga0102864_11519061 38Ga0102830_11317621 39Ga0102830_11525991 40Ga0129348_10495701 41Ga0129348_13199272 42Ga0129345_12586171 43Ga0129342_11074212 44Ga0129342_12856541 45Ga0129351_10497151 46Ga0129351_11929873 47Ga0136656_13051172 48Ga0129333_100083431 49Ga0129333_100654581 50Ga0129333_102406031 51Ga0129333_103511042 52Ga0129333_103920251 53Ga0129333_105495541 54Ga0129333_116665573 55Ga0129333_116848662 56Ga0129333_116959472 57Ga0129336_103532183 58Ga0129336_105912812 59Ga0136549_100679924 60Ga0136549_103828962 61Ga0151620_11864201 62Ga0151620_12238222 63Ga0129353_15165512 64Ga0180120_103671173 65Ga0181581_102372232 66Ga0180437_101765003 67Ga0181591_103880521 68Ga0181591_111420261 69Ga0181359_11470464 70Ga0194112_108794082 71Ga0211736_107229772 72Ga0211736_110016383 73Ga0211733_105573934 74Ga0211733_108362493 75Ga0211726_102602681 76Ga0211726_106049601 77Ga0211726_108525481 78Ga0211729_107387071 79Ga0211729_109577083 80Ga0211729_109592559 81Ga0194131_100857221 82Ga0194120_101933201 83Ga0208234_10386822 84Ga0208224_10309752 85Ga0194129_105191351 86Ga0194123_100479866 87Ga0222716_107459771 88Ga0222714_101279081 89Ga0222713_104312192 90Ga0222719_104362842 91Ga0222719_104692992 92Ga0196901_10861121 93Ga0181351_10565071 94Ga0244775_103401953 95Ga0255183_11148131 96Ga0208546_10232801 97Ga0208161_11070821 98Ga0208795_11794592 99Ga0208898_10302861 100Ga0208162_10202771 101Ga0208019_10409571 102Ga0208927_10505801 103Ga0208975_10236414 104Ga0209990_103539471 105Ga0209536_1008253903 106Ga0247723_10578012 107Ga0265593_11179063 108Ga0119945_10120301 109Ga0119945_10215341 110Ga0315901_102667595 111Ga0315901_105569853 112Ga0315901_105668461 113Ga0315906_103226235 114Ga0315276_114284253 115Ga0334980_0266808_3_113 116Ga0334995_0339721_809_964 117Ga0335014_0388067_499_609 118Ga0335031_0312400_1_144 119Ga0335053_0436483_665_784
Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62. 1JGIcombinedJ13530_1100555342 2WOR8_1003153014 3GOS2236_10627241 4Ga0065166_103165432 5Ga0068876_102252581 6Ga0068872_101300291 7Ga0075472_100923131 8Ga0099851_11534862 9Ga0099851_12428682 10Ga0099851_12596571 11Ga0099849_13121451 12Ga0099848_11413181 13Ga0102902_11642353 14Ga0102864_11519061 15Ga0129351_11929873 16Ga0129333_102406031 17Ga0129333_103511042 18Ga0129333_116665573 19Ga0129333_116848662 20Ga0129336_103532183 21Ga0136549_100679924 22Ga0151620_11864201 23Ga0180437_101765003 24Ga0181591_111420261 25Ga0181359_11470464 26Ga0211736_107229772 27Ga0194129_105191351 28Ga0265593_11179063 29Ga0315276_114284253 30Ga0335053_0436483_665_784
Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40. 1Ga0099850_12131881 2WOR8_1003153014 3GOS2236_10627241 4B570J29579_1005616 5Ga0068872_101300291 6Ga0066377_102588601 7Ga0075472_100923131 8Ga0099851_11534862 9Ga0099851_12428682 10Ga0099851_12596571 11Ga0099849_12646552 12Ga0099848_10223521 13Ga0099848_10352564 14Ga0099848_13166651 15Ga0102895_10934793 16Ga0102902_11642353 17Ga0102864_11519061 18Ga0102830_11317621 19Ga0102830_11525991 20Ga0129345_12586171 21Ga0129351_11929873 22Ga0129333_102406031 23Ga0129333_103920251 24Ga0129333_116665573 25Ga0129333_116848662 26Ga0129333_116959472 27Ga0129336_103532183 28Ga0129336_105912812 29Ga0136549_100679924 30Ga0136549_103828962 31Ga0151620_11864201 32Ga0181591_103880521 33Ga0181591_111420261 34Ga0181359_11470464 35Ga0194112_108794082 36Ga0211736_107229772 37Ga0211736_110016383 38Ga0211733_105573934 39Ga0211733_108362493 40Ga0211726_106049601 41Ga0211729_109577083 42Ga0194131_100857221 43Ga0194120_101933201 44Ga0208234_10386822 45Ga0222714_101279081 46Ga0222719_104692992 47Ga0181351_10565071 48Ga0255183_11148131 49Ga0208546_10232801 50Ga0208019_10409571 51Ga0209990_103539471 52Ga0209536_1008253903 53Ga0265593_11179063 54Ga0119945_10120301 55Ga0315901_102667595 56Ga0315901_105668461 57Ga0335053_0436483_665_784
Powered by MSAViewer

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 40.58% β-sheet: 0.00% Coil/Unstructured: 59.42%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
Powered by Feature Viewer

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.51
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.51
Powered by PDBe Molstar

Pfam ID	Name	% Frequency in 119 Family Scaffolds
PF03819	MazG	2.52
PF03477	ATP-cone	1.68
PF01467	CTP_transf_like	1.68
PF11450	DUF3008	0.84
PF00440	TetR_N	0.84
PF13759	2OG-FeII_Oxy_5	0.84

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	1.68 %
Unclassified	root	N/A	98.32 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.32 %
Viruses	superkingdom	All Organisms → Viruses	1.68 %

Name	Rank	Taxonomy	Distribution
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	0.84 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.84 %
Unclassified	root	N/A	98.32 %

Name	Rank	Taxonomy	Distribution
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	0.84 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.84 %
Unclassified	root	N/A	98.32 %

Name	Rank	Taxonomy	Distribution
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.84 %
Unclassified	root	N/A	98.32 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	0.84 %

Name	Rank	Taxonomy	Distribution
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	0.84 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.84 %
Unclassified	root	N/A	98.32 %

Name	Rank	Taxonomy	Distribution
Caudovirales	order	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	0.84 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.84 %
Unclassified	root	N/A	98.32 %

Name	Rank	Taxonomy	Distribution
Myoviridae	family	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae	0.84 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.84 %
Unclassified	root	N/A	98.32 %

Name	Rank	Taxonomy	Distribution
Bellamyvirus	genus	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Bellamyvirus	0.84 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.84 %
Unclassified	root	N/A	98.32 %

Name	Rank	Taxonomy	Distribution
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.84 %
Unclassified	root	N/A	98.32 %
unclassified Bellamyvirus	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Bellamyvirus → unclassified Bellamyvirus	0.84 %

Name	Rank	Taxonomy	Distribution
Bellamyvirus sp.	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Bellamyvirus → unclassified Bellamyvirus → Bellamyvirus sp.	0.84 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.84 %
Unclassified	root	N/A	98.32 %

Scaffold	Taxonomy	Length	IMG/M Link
3300007541\|Ga0099848_1333286	Not Available	515	Open in IMG/M
3300009059\|Ga0102830_1131762	Not Available	736	Open in IMG/M
3300010389\|Ga0136549_10067992	All Organisms → Viruses → Predicted Viral	1767	Open in IMG/M
3300028178\|Ga0265593_1117906	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Bellamyvirus → unclassified Bellamyvirus → Bellamyvirus sp.	698	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	99.16%
Terrestrial	Environmental → Terrestrial	0.84%

Habitat	Taxonomy	Distribution
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	0.84%
Freshwater	Environmental → Aquatic → Freshwater	34.45%
Marine	Environmental → Aquatic → Marine	61.34%
Non-Marine Saline And Alkaline	Environmental → Aquatic → Non-Marine Saline And Alkaline	1.68%
Sediment	Environmental → Aquatic → Sediment	1.68%

Habitat	Taxonomy	Distribution
Coastal	Environmental → Aquatic → Marine → Coastal	41.18%
Drinking Water	Environmental → Aquatic → Freshwater → Drinking Water	1.68%
Hypersaline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline	0.84%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	11.76%
Lake	Environmental → Aquatic → Freshwater → Lake	18.49%
Lentic	Environmental → Aquatic → Freshwater → Lentic	8.40%
Lotic	Environmental → Aquatic → Freshwater → Lotic	1.68%
Oceanic	Environmental → Aquatic → Marine → Oceanic	2.52%
River	Environmental → Aquatic → Freshwater → River	0.84%
Saline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline	0.84%
Unclassified	Environmental → Aquatic → Marine → Unclassified	5.04%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	3.36%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.68%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified	0.84%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.84%

Habitat	Taxonomy	Distribution
Epilimnion	Environmental → Aquatic → Freshwater → Lentic → Epilimnion	2.52%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	8.40%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	2.52%
Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment	1.68%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	0.84%
Sediment	Environmental → Aquatic → Marine → Wetlands → Sediment	0.84%
Sediment	Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment	0.84%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	41.18%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	17.65%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	5.88%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	5.04%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	3.36%
Unclassified	Environmental → Aquatic → Freshwater → Lotic → Unclassified	1.68%
Unclassified	Environmental → Aquatic → Freshwater → Drinking Water → Unclassified	1.68%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.68%
Unclassified	Environmental → Aquatic → Freshwater → River → Unclassified	0.84%
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	0.84%
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	0.84%
Unclassified	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified	0.84%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified	0.84%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic → Freshwater → Drinking Water → Unclassified → Aquatic	1.68%
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	24.37%
Deep Subsurface Sediment	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment	0.84%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	8.40%
Estuarine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine	0.84%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	4.20%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	8.40%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	4.20%
Freshwater	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater	3.36%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater	2.52%
Freshwater	Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater	1.68%
Freshwater	Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater	0.84%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	5.04%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	4.20%
Freshwater Lentic	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic	0.84%
Freshwater To Marine Saline Gradient	Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient	16.81%
Freshwater, Plankton	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton	0.84%
Hypersaline Lake Sediment	Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment	0.84%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	0.84%
Marine	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine	0.84%
Marine Methane Seep Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Marine Methane Seep Sediment	1.68%
Marine Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment	1.68%
Saline Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water	0.84%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	2.52%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	0.84%
Wetland	Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland	0.84%

Visualization
Download SVG Download PNG Download CSV
Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001213	Combined assembly of wetland microbial communities from Twitchell Island in the Sacramento Delta (Jan 2013 JGI Velvet Assembly)	Environmental	Open in IMG/M
3300001687	Deep Marine Sediments WOR-3-8_10	Environmental	Open in IMG/M
3300001968	Marine microbial communities from Lake Gatun, Panama - GS020	Environmental	Open in IMG/M
3300002272	Freshwater microbial communities from Lake Mendota, WI - 27JUL2010 deep hole epilimnion ns	Environmental	Open in IMG/M
3300004112	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 2)	Environmental	Open in IMG/M
3300005527	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG	Environmental	Open in IMG/M
3300005528	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG	Environmental	Open in IMG/M
3300005934	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S23_td_SurfaceB_ad_5m_LV_B	Environmental	Open in IMG/M
3300006870	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_>0.8_DNA	Environmental	Open in IMG/M
3300006917	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_N_<0.8_DNA	Environmental	Open in IMG/M

Showing 1 to 10 of 79 entries

Previous1 2 3 4 5…8Next

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGIcombinedJ13530_1100555342	3300001213	Wetland	QVLFDAQKGYTYDEVSVPPRVIDIREVIQQLDDNIGAVLGI*
WOR8_1003153014	3300001687	Marine Sediment	QVLFESQKGYTYDPTSVPARVADIRDVIRDIDDNLGAVLGVNE*
GOS2236_10627241	3300001968	Marine	PRVAAAVRQVLFEAQKGYTYDEVSVPPRIADIRSVVQSIDDNLGTVLGV*
B570J29579_1005616	3300002272	Freshwater	RAAAAIRQVLFEAQQGYTYDELSVPPRISDIRAVIQDIDDNIGAVIGV*
Ga0065166_103165432	3300004112	Freshwater Lake	VRQILFENQKGYTYDEVSVPPRISDIRSVIKDLDEKIGAIVG*
Ga0068876_102252581	3300005527	Freshwater Lake	QKGYTYNEMSVPPRVSDIRGVIQDLDNNIGAVLGV*
Ga0068872_101300291	3300005528	Freshwater Lake	ARTAAAVRQVLFDAQKGYTYDEMSVPPRVSDIRGVIRDLDDNIGAVLGV*
Ga0066377_102588601	3300005934	Marine	SAAAVRQVLFDSQKGYTYDEVSVPPRVTDIRGVIQQLDDSIGAVVEV*
Ga0075479_104059822	3300006870	Aqueous	ESQKGYTYDPTSVPARVADIRDVIRDIDDNLGAVLGVNE*
Ga0075472_100923131	3300006917	Aqueous	AAAVRQVLFDSQKGYTYDEVSIPPRIADIRGVIQQLDDSIGAALGI*
Ga0099851_11534862	3300007538	Aqueous	RQVLFDAQKGYTYDEVSIPPRIVDIRSTIQKLDDSIGAVIDA*
Ga0099851_11541731	3300007538	Aqueous	IDARTAAAVRQVLFDAQKGYTYDEVSVPPRVTDIRGVIQQLDDNIGAVLSA*
Ga0099851_12428682	3300007538	Aqueous	VRQVLFDSQKGYTYDEVSVPLRISDIRTVIQSIDDNIGTILGA*
Ga0099851_12596571	3300007538	Aqueous	KGYTYDEVSVPPRIVDIRSAIQQLDDSIGAVLGA*
Ga0099849_10504181	3300007539	Aqueous	AAAAVRQVLFDAQKGYTYDEVSIPPRIVDIRSTIQQLDDSIGAVIGA*
Ga0099849_10987824	3300007539	Aqueous	AAAAVRQVLFDAQKGYTYDEVSIPPRIVDIRSTIQQLDDSISAVIGA*
Ga0099849_11793982	3300007539	Aqueous	MPVRAAAAVRQVLFDAQKGYTYDEVSVPPRVSDIRGVIQQLDDNIGAVLGA*
Ga0099849_12646552	3300007539	Aqueous	QKGYTYDEVSIPLRIVDIRSAIQQLDDNIGAVIGV*
Ga0099849_13121451	3300007539	Aqueous	QKGYTYDPTCVPERVVDIRTVIRDIDDNIGAVLGVNE*
Ga0099848_10223521	3300007541	Aqueous	QVLFDAQKGYTYDEVSVPPRVVDIRNVIQQLDDNISDVLGV*
Ga0099848_10352564	3300007541	Aqueous	AVRQVLFDAQKGYTYDEVSVPPRIIDIRSTIQQLDDSIGAVIGV*
Ga0099848_10642474	3300007541	Aqueous	QVLFDAQKGYTYDEVSVPPRVVDIRNVIQQLDDNISDVLGA*
Ga0099848_11413181	3300007541	Aqueous	KMDARCAAAVRQILFESQKGYTYDEVSVPPRITDIRTVIQNLDDNIGAVLNAN*
Ga0099848_13028252	3300007541	Aqueous	AAAVRQVLFDAQKGYTYDEVSVPPRVTDIRGVIQQLDDSISAVLGA*
Ga0099848_13166651	3300007541	Aqueous	KMDARCAAAVRQILFESQKGYTYDEVSVPPRITDIRNVIQDIDDNIGAVLNAN*
Ga0099848_13332863	3300007541	Aqueous	QKGYTYDEVSVPPRVIDIRGVIQQLDDSIGAVLGA*
Ga0099846_10534041	3300007542	Aqueous	RTAAAVRQVLFESQVGYTYDEGSVPPRVSDIRGVIQQLDDSIGAVLGA*
Ga0102920_12352121	3300007600	Estuarine	KGYTYDEVSVPPRISDIRRVIQQLDDNIGAVLGA*
Ga0102896_11993313	3300007618	Estuarine	VTIKMDARTAAAVRQVLFDAQKGYTYNEVSVPPRVSDIRGVIQQLDEGIGAVLGV*
Ga0102871_100227611	3300007620	Estuarine	QILFENQKGYTYDELSVPPRISDIRAVILDLDEKIGAVVGE*
Ga0102895_10934793	3300007629	Estuarine	QKGYTYNEVSVPPRVSDIRGVIQQLDEGIGAVLGV*
Ga0102902_11642353	3300007644	Estuarine	FDSQKGYTYDALSVPPRVVDIRNVIQQLDENLESLLGD*
Ga0099850_10707541	3300007960	Aqueous	AQKGYTYDEVSVPPRVVDIREVIQQLDDNIGAVFSA*
Ga0099850_12131881	3300007960	Aqueous	QVLFDAQKGYTYDEVSVPPRVSDIRGVIQQLDDSIGAVLGS*
Ga0114350_10221054	3300008116	Freshwater, Plankton	QKGYTYDEFSVPPRVSDIRKVIQQLDDNIDKVLGEE*
Ga0102831_12937973	3300008996	Estuarine	VLFESQKGYTYDEVSVPPRVTDIRLVIQDLDDSISAVLGV*
Ga0102864_11519061	3300009051	Estuarine	MTKTVSVKMDVRTAAAVRQILSENQNGYTYDELSVPPRISDIRAVILDLDEKIGAVVGE*
Ga0102830_11317621	3300009059	Estuarine	SQKGYTYDEVSVPPRVTDIREVIQQLDDNIGAVVGS*
Ga0102830_11525991	3300009059	Estuarine	QVLFDAQRGYTYDEVSVPPRVTDIRNVIQDLDDNIGAVLGV*
Ga0129348_10495701	3300010296	Freshwater To Marine Saline Gradient	KGYTYDEVSVPPRITDIRTVIQDLDDNIGAVLNVN*
Ga0129348_13199272	3300010296	Freshwater To Marine Saline Gradient	KGYTYDPTCVPERVVDIRTVIRDIDDNIGAVLGVNE*
Ga0129345_12586171	3300010297	Freshwater To Marine Saline Gradient	SQKGYTYDPTCVPERVVDIRTVIRDIDDNIGAVLGVNE*
Ga0129342_11074212	3300010299	Freshwater To Marine Saline Gradient	RQVLFDAQKGYTYDEVSIPPRIVDIRSTIQQLDDSIGAVIGD*
Ga0129342_12856541	3300010299	Freshwater To Marine Saline Gradient	VLFDAQKGYTYDEVSIPPRIVDIRSTIQQLDDSIGAVIGV*
Ga0129351_10497151	3300010300	Freshwater To Marine Saline Gradient	VLFDAQKGYTYDEVSIPPRIVDIRSTIQQLDDSIGAVIGA*
Ga0129351_11929873	3300010300	Freshwater To Marine Saline Gradient	FDAQKGYTYDEASVPPRILDIRSVIQDLDADLGAVLGV*
Ga0136656_13051172	3300010318	Freshwater To Marine Saline Gradient	QVLFDAQKGYTYDEVSVPPRVTDIRGVIQQLDDSIGDVLGV*
Ga0129333_100083431	3300010354	Freshwater To Marine Saline Gradient	VTIKMDARSAAAVRQVLFDSQKGYTYNEVSVPPRIADIRGVIQQLDDSIGAVLGV*
Ga0129333_100654581	3300010354	Freshwater To Marine Saline Gradient	VRQVLFDAQKGYTYNEASVPPRVTNIRGVIQDLDDNIGAVLGV*
Ga0129333_102406031	3300010354	Freshwater To Marine Saline Gradient	MDARQAAAVRQVLFDAQKGYTYNEVSVPPRITDIRSVVQQLDDSIGSVVGEQ*
Ga0129333_103511042	3300010354	Freshwater To Marine Saline Gradient	VTEEKLVTIKMNARTAAAVRQVLFDAQKGYTYNEASVPPRVTNIRGVIRDLDNNIGAVLGV*
Ga0129333_103920251	3300010354	Freshwater To Marine Saline Gradient	AAVRQVLFESQVGYTYDEASVPPRITDIRSVIQDLDDSIGAVIGV*
Ga0129333_105495541	3300010354	Freshwater To Marine Saline Gradient	RAAAAVRQVLFDAQKGYTYDEVSVPPRIADIRSVVQSIDDSIGAVLGV*
Ga0129333_116665573	3300010354	Freshwater To Marine Saline Gradient	AAAVRQVLFEAQRGYTYDEVSVPPRIADIRKVIQDIDDSITAVVE*
Ga0129333_116848662	3300010354	Freshwater To Marine Saline Gradient	VLFDAQKGYTYDEVSVPPRVTDIRSVVQQLDAGIEEVIVG*
Ga0129333_116959472	3300010354	Freshwater To Marine Saline Gradient	AAAVRQVLFDAQKGYTYDEVSVPPRVTDIREVIGQLDDNIGAVLGA*
Ga0129336_103532183	3300010370	Freshwater To Marine Saline Gradient	QILFDAQKGYTYDEMSVPPRITDIRNIIQDIDNSISEALGV*
Ga0129336_105912812	3300010370	Freshwater To Marine Saline Gradient	IKMNARTAAAVRQVLFDAQKGYTYNEASVPPRVTNIRGVIQDLDDNIGAVLGV*
Ga0136549_100679924	3300010389	Marine Methane Seep Sediment	VIKEKQVTLKLDARTAAVVRQVLFESQLEYTYNEGSVPPRVSDIRDVIQQLDDSIGAVLGA*
Ga0136549_103828962	3300010389	Marine Methane Seep Sediment	AAAVRQVLFDAQRGYTYDEVSIPPRIVDIRSVIQQLDDSIGAVIGD*
Ga0151620_11864201	3300011268	Freshwater	KGYTYDEVSVPPRISDIRNVIRDIDDNLGAVLGV*
Ga0151620_12238222	3300011268	Freshwater	KGYTYDEVSVPPRISDIRNVIRDIDDSIGAVLGV*
Ga0129353_15165512	3300012525	Aqueous	GYTYDPTCVPERVVDIRTVIRDIDDNIGAVLGVNE*
Ga0180120_103671173	3300017697	Freshwater To Marine Saline Gradient	AAAAVRQVLFDAQKGYTYDEVSVPPRVSDIRGVIQQLDDNIGAVLGV
Ga0181581_102372232	3300017962	Salt Marsh	QKGYTYDPTCVPERVVDIRTVIRDIDDNIGAVLGVNE
Ga0180437_101765003	3300017963	Hypersaline Lake Sediment	FESQRGYTYDEVSVPPRIADIRSVIQSIDDNIGAVLGA
Ga0181591_103880521	3300018424	Salt Marsh	ATKGFTYDPICVPPRVVDIREVIRDLDDNIGAVLGVNE
Ga0181591_111420261	3300018424	Salt Marsh	KQVIISIDARAAAAVRQVLFESQLGYTYNEGSVPPRIIDIREVIQQIDDSIGAVLGV
Ga0181359_11470464	3300019784	Freshwater Lake	HQKGYTYNEDSVPPRVVDIRSVIMDLDEKIGAIVGRE
Ga0194112_108794082	3300020109	Freshwater Lake	VRQVLFDAQKGYTYDEVSVPPRISDIRSIIQSIDENLDAILGD
Ga0211736_107229772	3300020151	Freshwater	QKGYTYDEVSVPPRVADIRRVIQQLDDSIDSILSV
Ga0211736_110016383	3300020151	Freshwater	AAAVRQILFENQKGYTYDEVSVPPRISDIRAVIADLDEKIGTIVGE
Ga0211733_105573934	3300020160	Freshwater	DVRAAAAVRQVLFEAQRGYTYDEVSVPPRISDIRSVIQGIDDNIGAVLGA
Ga0211733_108362493	3300020160	Freshwater	RQVLFDAQKGYTYDEVSVPPRVSDIRGVIQQLDENIESALGAE
Ga0211726_102602681	3300020161	Freshwater	VLFDAQKGYTYDEVSIPPRVADIRGVIQQLDDNISFILDAE
Ga0211726_106049601	3300020161	Freshwater	AVRQVLFDSQKGYTYDEASVPPRVVDIRSVIQDLDDNIVAVLGA
Ga0211726_108525481	3300020161	Freshwater	VLFDAQKGYTYDEVSIPPRVADIRGVIQQLDDSIGAALGA
Ga0211729_107387071	3300020172	Freshwater	ARTAAAVRQVLFDAQKGYTYDEVSVPPRVSDIRGVIQQLDDNIGTVLGV
Ga0211729_109577083	3300020172	Freshwater	RAAAAVRQVLFDAQKGYTYDEVSIPPRVADIRGVIQQLDDNISFILDAE
Ga0211729_109592559	3300020172	Freshwater	RAAAAVRQVLFDAQKGYTYDEVSIPPRVADIRGVIQQLDDSIGAALGA
Ga0194131_100857221	3300020193	Freshwater Lake	TAAAVRQVLFDAQKGYTYDEVSVPPRVSDIRDVIRQLDDNISDIVVM
Ga0194120_101933201	3300020198	Freshwater Lake	KMDARTAAAVRQVLFDSQKGYTYNEISVPPRISDIRAVIQQLDDNIGAVLGV
Ga0208234_10386822	3300020515	Freshwater	KLDARAAAAVRQVLFEAQRGYTYDKVSVPPRIVDIRSVIQSIDDNLGAALGV
Ga0208224_10309752	3300020528	Freshwater	TAAAVRQVLFDAQKGYTYDEVSVPPRVTDIREVIGQLDDNIGAVFGA
Ga0194129_105191351	3300020578	Freshwater Lake	VLFDAQKGYTYDEVSVPPRISDIRSIIQSIDENLDAILGD
Ga0194123_100479866	3300021093	Freshwater Lake	QKGYTYDEVSVPPRISDIRSIIQSIDENLDAILGD
Ga0222716_107459771	3300021959	Estuarine Water	GYTYDPASVPARVADIREVIRDIDDNLGAVLGVNE
Ga0222714_101279081	3300021961	Estuarine Water	AQKGYTYDEGSVPPRITDIRSVIVDLDEKIGAIVGNE
Ga0222713_104312192	3300021962	Estuarine Water	VRQVLFDSQKGYTYDELSVPPRVTDIRNVIQQLDDNIGAVLGV
Ga0222719_104362842	3300021964	Estuarine Water	VIKEKQVTLKLDARTAAVVRQVLFESQLEYTYNEGSVPPRVSDIRDVIQQLDDSIGAVLG
Ga0222719_104692992	3300021964	Estuarine Water	AAVRQVLFESQKGYTYDEVSVPPRVTDIRVVIQDLDDSISAILGV
Ga0196901_10861121	3300022200	Aqueous	VLFDAQKGYTYDEVSIPPRIVDIRSTIQQLDDSIGAVIGA
Ga0181351_10565071	3300022407	Freshwater Lake	FDAQKGYTYDEFSVPPRVSDIRKVIQQLDDNIDKVLGEE
Ga0244775_103401953	3300024346	Estuarine	AQRGYTYDEVSVPPRVTDIRNVIQDLDDNIGAVLGV
Ga0255183_11148131	3300024515	Freshwater	VRQVLFDAQKGYTYNQTSVPPRVIDIRNVIQQLDDNIGAVIGV
Ga0208546_10232801	3300025585	Aqueous	QVLFDSQKGYTYDEVSVPPRIADIRTVIQDLDDNIGAVLGV
Ga0208161_11070821	3300025646	Aqueous	AAAVRQVLFDAQKGYTYDEVSVPPRVTDIRGVIQQLDDSISAVLGA
Ga0208795_11794592	3300025655	Aqueous	VLFESQKGYTYDPISVPARVADIRDVIRDIDDNLGAVLGVNE
Ga0208898_10302861	3300025671	Aqueous	SAAAVRQVLFDAQKGYTYDEVSVPPRVTDIREVIQQLDDNIGAVLGV
Ga0208162_10202771	3300025674	Aqueous	RAAAAVRQVLFDAQKGYTYDEVSIPPRIVDIRSTIQQLDDSISAVIGA
Ga0208019_10409571	3300025687	Aqueous	DAQKGYTYDEVSVPPRVVDIREVIQQLDDNIGAVFSA
Ga0208927_10505801	3300027220	Estuarine	RQILFENQKGYTYDELSVPPRISDIRAVILDLDEKIGAVVGE
Ga0208975_10236414	3300027659	Freshwater Lentic	DARTAAAVRQVLFEAQKGYTYDEVSVPPRVADIRSVIQSIDDNLGAVLGA
Ga0209990_103539471	3300027816	Freshwater Lake	LFEAQKGYTYNEMSVPPRVSDIRGVIQDLDNNIGAVLGV
Ga0209536_1008253903	3300027917	Marine Sediment	AQKGYTYDEVSIPPRVTDIREVIQQLDDSIGDVLGA
Ga0247723_10578012	3300028025	Deep Subsurface Sediment	QRGYTYDEVSVPPRIADIRSVIQSIDDNIGAVLGV
Ga0265593_11179063	3300028178	Saline Water	VTKSVSIEMEVRAAAAVRQILFESQKGYTYTEGSVPPRIVEIRSVILSIDEKIGEALE
Ga0119945_10120301	3300029933	Aquatic	QKGYTYDEVSVPPRIADIRSVVQQLDDSIGAVLGV
Ga0119945_10215341	3300029933	Aquatic	RQVLFDSQKGYTYDEVSVPPRISDIRGVIQQLDDNIGAVLGI
Ga0315901_102667595	3300031963	Freshwater	HFEAQQGYTYDELSVPPRISDIRAVIQNLDDNIGAVLGVS
Ga0315901_105569853	3300031963	Freshwater	QKGYTYDEFSVPPRVSDIRKVIQQLDENIESALGVE
Ga0315901_105668461	3300031963	Freshwater	RQVLFEAQKGYTYDEVSVPPRISDIRGVVQQLDDNIGAVLGA
Ga0315906_103226235	3300032050	Freshwater	QQGYTYDELSVPPRISDIRAVIQDIDDNIGAVIGV
Ga0315276_114284253	3300032177	Sediment	KGYTYDEGSVPPRITDIRTVISDLDEKIGVIVGNE
Ga0334980_0266808_3_113	3300033816	Freshwater	QKGYTYDEVSVPPRVSDIRKVIQQLDDNIDKVLGEE
Ga0334995_0339721_809_964	3300034062	Freshwater	MDARCAAAVRQVLFEAQKGYTYNEVSVPPRVADIRSVIQSIDDNLGAVLGV
Ga0335014_0388067_499_609	3300034094	Freshwater	AQKGYTYDEVSVPPRVTDIREVIGQLDDNIGAVFGA
Ga0335031_0312400_1_144	3300034104	Freshwater	TAAAVRQVLFDAQKGYTYDEVSVPPRVSDIRGVIQQLDDNIGAVLGV
Ga0335053_0436483_665_784	3300034118	Freshwater	VLFDAQKGYTYNELSVPPRVVDIRNVIADLDEKIGSVVE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F074499

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences