Metagenome / Metatranscriptome Family F074482

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F074482
Family Type	Metagenome / Metatranscriptome
Number of Sequences	119
Average Sequence Length	74 residues
Representative Sequence	MQHFDHILESLATRTQRVFDTALGAERHQLLTRRLYQLYGALELARLLEYGRLARRIETQVDACRRNIEADSGCAS
Number of Associated Samples	69
Number of Associated Scaffolds	119

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	93.28 %
% of genes near scaffold ends (potentially truncated)	13.45 %
% of genes from short scaffolds (< 2000 bps)	68.91 %
Associated GOLD sequencing projects	64
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.73

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (53.782 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated (23.529 % of family members)
Environment Ontology (ENVO)	Unclassified (36.134 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (29.412 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 61.54% β-sheet: 0.00% Coil/Unstructured: 38.46%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.73
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.73
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Structural matches with SCOPe domains

SCOP family	SCOP domain	Representative PDB	TM-score
a.25.1.0: automated matches	d4cyba_	4cyb	0.8401
a.25.1.1: Ferritin	d4cvra_	4cvr	0.83258
a.25.1.0: automated matches	d2c41a_	2c41	0.8283
a.25.1.1: Ferritin	d1moja_	1moj	0.8267
a.25.1.0: automated matches	d3b3ha_	3b3h	0.82649

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 119 Family Scaffolds
PF13495	Phage_int_SAM_4	15.13
PF00589	Phage_integrase	10.08
PF13155	Toprim_2	4.20
PF10543	ORF6N	3.36
PF01627	Hpt	2.52
PF13470	PIN_3	0.84
PF13662	Toprim_4	0.84
PF07690	MFS_1	0.84
PF12844	HTH_19	0.84
PF01070	FMN_dh	0.84
PF13699	DUF4157	0.84
PF08335	GlnD_UR_UTase	0.84
PF00141	peroxidase	0.84

COG ID	Name	Functional Category	% Frequency in 119 Family Scaffolds
COG0069	Glutamate synthase domain 2	Amino acid transport and metabolism [E]	0.84
COG0376	Catalase (peroxidase I)	Inorganic ion transport and metabolism [P]	0.84
COG1304	FMN-dependent dehydrogenase, includes L-lactate dehydrogenase and type II isopentenyl diphosphate isomerase	Energy production and conversion [C]	0.84
COG2844	UTP:GlnB (protein PII) uridylyltransferase	Signal transduction mechanisms [T]	0.84

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.78 %
All Organisms	root	All Organisms	46.22 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.78 %
cellular organisms	root	All Organisms → cellular organisms	46.22 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.78 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	46.22 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.78 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	39.50 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.84 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.78 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	11.76 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	5.04 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.68 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.84 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.78 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	10.92 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.84 %
Neisseriales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales	0.84 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	0.84 %
Oceanospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales	0.84 %
Methylococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales	0.84 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.78 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	4.20 %
Oxalobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae	3.36 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.84 %
Pleioneaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Pleioneaceae	0.84 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.84 %
Chromobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Chromobacteriaceae	0.84 %
Methylococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	0.84 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.78 %
Ralstonia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Ralstonia	4.20 %
Massilia group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Massilia group	0.84 %
Pleionea	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Pleioneaceae → Pleionea	0.84 %
Andreprevotia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Chromobacteriaceae → Andreprevotia	0.84 %
Methylomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylomonas	0.84 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.84 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.84 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.78 %
Ralstonia syzygii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Ralstonia → Ralstonia syzygii	3.36 %
Pleionea sediminis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Pleioneaceae → Pleionea → Pleionea sediminis	0.84 %
Duganella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Massilia group → Duganella	0.84 %
Ralstonia solanacearum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Ralstonia → Ralstonia solanacearum	0.84 %
Andreprevotia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Chromobacteriaceae → Andreprevotia	0.84 %
Methylomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylomonas	0.84 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.84 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.84 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.78 %
Ralstonia syzygii R24	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Ralstonia → Ralstonia syzygii → Ralstonia syzygii R24	3.36 %
unclassified Duganella	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Massilia group → Duganella → unclassified Duganella	0.84 %
Pleionea sediminis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Pleioneaceae → Pleionea → Pleionea sediminis	0.84 %
Ralstonia solanacearum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Ralstonia → Ralstonia solanacearum	0.84 %
Andreprevotia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Chromobacteriaceae → Andreprevotia	0.84 %
Methylomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylomonas	0.84 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.84 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.84 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.78 %
Ralstonia syzygii R24	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Ralstonia → Ralstonia syzygii → Ralstonia syzygii R24	3.36 %
Duganella sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Massilia group → Duganella → unclassified Duganella → Duganella sp.	0.84 %
Pleionea sediminis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Pleioneaceae → Pleionea → Pleionea sediminis	0.84 %
Ralstonia solanacearum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Ralstonia → Ralstonia solanacearum	0.84 %
Andreprevotia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Chromobacteriaceae → Andreprevotia	0.84 %
Methylomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylomonas	0.84 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.84 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.84 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.84 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000546\|LJNas_1001291	All Organisms → cellular organisms → Bacteria → Proteobacteria	3706	Open in IMG/M
3300004091\|Ga0062387_100001096	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Ralstonia → Ralstonia solanacearum	6735	Open in IMG/M
3300004091\|Ga0062387_100372598	Not Available	951	Open in IMG/M
3300004091\|Ga0062387_100574532	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	803	Open in IMG/M
3300005591\|Ga0070761_10004501	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	8229	Open in IMG/M
3300005602\|Ga0070762_10344950	Not Available	948	Open in IMG/M
3300006893\|Ga0073928_11059451	Not Available	550	Open in IMG/M
3300009088\|Ga0099830_10538554	Not Available	955	Open in IMG/M
3300009500\|Ga0116229_10115518	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylomonas	2395	Open in IMG/M
3300009500\|Ga0116229_10167878	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Massilia group → Duganella → unclassified Duganella → Duganella sp.	1908	Open in IMG/M
3300009500\|Ga0116229_10212275	All Organisms → cellular organisms → Bacteria → Proteobacteria	1661	Open in IMG/M
3300009500\|Ga0116229_10428782	Not Available	1101	Open in IMG/M
3300009500\|Ga0116229_10527090	Not Available	976	Open in IMG/M
3300009500\|Ga0116229_10610916	Not Available	896	Open in IMG/M
3300009500\|Ga0116229_10677569	Not Available	843	Open in IMG/M
3300009500\|Ga0116229_10727151	Not Available	809	Open in IMG/M
3300009510\|Ga0116230_10091485	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Pleioneaceae → Pleionea → Pleionea sediminis	2633	Open in IMG/M
3300009510\|Ga0116230_10114444	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Ralstonia → Ralstonia syzygii → Ralstonia syzygii R24	2287	Open in IMG/M
3300009510\|Ga0116230_10216047	All Organisms → cellular organisms → Bacteria → Proteobacteria	1553	Open in IMG/M
3300009510\|Ga0116230_10368786	Not Available	1123	Open in IMG/M
3300009510\|Ga0116230_10643093	Not Available	800	Open in IMG/M
3300009633\|Ga0116129_1007627	Not Available	4460	Open in IMG/M
3300009633\|Ga0116129_1010264	All Organisms → cellular organisms → Bacteria → Proteobacteria	3677	Open in IMG/M
3300009633\|Ga0116129_1014235	All Organisms → cellular organisms → Bacteria	2955	Open in IMG/M
3300009633\|Ga0116129_1045365	All Organisms → cellular organisms → Bacteria → Proteobacteria	1382	Open in IMG/M
3300009633\|Ga0116129_1057027	Not Available	1193	Open in IMG/M
3300009633\|Ga0116129_1061009	Not Available	1142	Open in IMG/M
3300009633\|Ga0116129_1082567	Not Available	943	Open in IMG/M
3300009701\|Ga0116228_10579203	Not Available	763	Open in IMG/M
3300009709\|Ga0116227_10029411	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	6029	Open in IMG/M
3300009709\|Ga0116227_10114490	Not Available	2168	Open in IMG/M
3300009709\|Ga0116227_10161407	Not Available	1761	Open in IMG/M
3300009709\|Ga0116227_10732598	All Organisms → cellular organisms → Bacteria → Proteobacteria	746	Open in IMG/M
3300009787\|Ga0116226_10185477	Not Available	2165	Open in IMG/M
3300009787\|Ga0116226_10871294	All Organisms → cellular organisms → Bacteria → Proteobacteria	877	Open in IMG/M
3300009787\|Ga0116226_11310811	Not Available	680	Open in IMG/M
3300011271\|Ga0137393_10390390	Not Available	1191	Open in IMG/M
3300012582\|Ga0137358_10359986	Not Available	985	Open in IMG/M
3300012923\|Ga0137359_10161222	Not Available	2001	Open in IMG/M
3300012929\|Ga0137404_10009583	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae	6669	Open in IMG/M
3300012929\|Ga0137404_10355172	Not Available	1284	Open in IMG/M
3300012929\|Ga0137404_10642700	All Organisms → cellular organisms → Bacteria	956	Open in IMG/M
3300014156\|Ga0181518_10326886	Not Available	757	Open in IMG/M
3300014164\|Ga0181532_10043568	All Organisms → cellular organisms → Bacteria → Proteobacteria	3006	Open in IMG/M
3300014168\|Ga0181534_10163733	Not Available	1146	Open in IMG/M
3300014168\|Ga0181534_10255256	Not Available	932	Open in IMG/M
3300014168\|Ga0181534_10446774	Not Available	723	Open in IMG/M
3300014169\|Ga0181531_10295467	Not Available	991	Open in IMG/M
3300014200\|Ga0181526_10549363	Not Available	730	Open in IMG/M
3300014201\|Ga0181537_10002597	All Organisms → cellular organisms → Bacteria → Proteobacteria	15866	Open in IMG/M
3300014201\|Ga0181537_10009352	All Organisms → cellular organisms → Bacteria → Proteobacteria	7400	Open in IMG/M
3300014501\|Ga0182024_10969573	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1017	Open in IMG/M
3300014838\|Ga0182030_10144512	Not Available	3049	Open in IMG/M
3300015160\|Ga0167642_1003347	All Organisms → cellular organisms → Bacteria → Proteobacteria	3077	Open in IMG/M
3300015206\|Ga0167644_1018296	All Organisms → cellular organisms → Bacteria → Proteobacteria	3152	Open in IMG/M
3300018044\|Ga0187890_10519515	Not Available	670	Open in IMG/M
3300019789\|Ga0137408_1252266	All Organisms → cellular organisms → Bacteria → Proteobacteria	7763	Open in IMG/M
3300019789\|Ga0137408_1276971	All Organisms → cellular organisms → Bacteria → Proteobacteria	2058	Open in IMG/M
3300020061\|Ga0193716_1002429	All Organisms → cellular organisms → Bacteria → Proteobacteria	10490	Open in IMG/M
3300020580\|Ga0210403_10009226	All Organisms → cellular organisms → Bacteria	8084	Open in IMG/M
3300021433\|Ga0210391_10151348	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Ralstonia → Ralstonia syzygii → Ralstonia syzygii R24	1827	Open in IMG/M
3300021475\|Ga0210392_10094506	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1953	Open in IMG/M
3300021478\|Ga0210402_10961764	All Organisms → cellular organisms → Bacteria → Proteobacteria	781	Open in IMG/M
3300021479\|Ga0210410_10656526	All Organisms → cellular organisms → Bacteria → Proteobacteria	928	Open in IMG/M
3300021479\|Ga0210410_11206212	Not Available	648	Open in IMG/M
3300022881\|Ga0224545_1050557	Not Available	587	Open in IMG/M
3300024176\|Ga0224565_1000857	All Organisms → cellular organisms → Bacteria → Proteobacteria	3593	Open in IMG/M
3300025463\|Ga0208193_1001515	All Organisms → cellular organisms → Bacteria → Proteobacteria	10139	Open in IMG/M
3300025463\|Ga0208193_1002084	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	8300	Open in IMG/M
3300025463\|Ga0208193_1006093	Not Available	4151	Open in IMG/M
3300025463\|Ga0208193_1011683	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Ralstonia → Ralstonia syzygii → Ralstonia syzygii R24	2665	Open in IMG/M
3300025463\|Ga0208193_1032927	Not Available	1257	Open in IMG/M
3300025463\|Ga0208193_1050215	Not Available	919	Open in IMG/M
3300025634\|Ga0208589_1077005	Not Available	805	Open in IMG/M
3300025634\|Ga0208589_1122567	Not Available	603	Open in IMG/M
3300026557\|Ga0179587_10586726	All Organisms → cellular organisms → Bacteria	733	Open in IMG/M
3300027609\|Ga0209221_1102483	Not Available	735	Open in IMG/M
3300027783\|Ga0209448_10280557	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	547	Open in IMG/M
3300027795\|Ga0209139_10119227	All Organisms → cellular organisms → Bacteria → Proteobacteria	931	Open in IMG/M
3300027795\|Ga0209139_10141240	All Organisms → cellular organisms → Bacteria → Proteobacteria	851	Open in IMG/M
3300027807\|Ga0209208_10014412	All Organisms → cellular organisms → Bacteria	9737	Open in IMG/M
3300027807\|Ga0209208_10092424	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	2114	Open in IMG/M
3300027807\|Ga0209208_10188761	Not Available	1165	Open in IMG/M
3300027807\|Ga0209208_10250455	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Chromobacteriaceae → Andreprevotia	938	Open in IMG/M
3300027829\|Ga0209773_10446530	Not Available	534	Open in IMG/M
3300027853\|Ga0209274_10000017	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	187427	Open in IMG/M
3300027860\|Ga0209611_10107893	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1852	Open in IMG/M
3300027860\|Ga0209611_10339807	Not Available	873	Open in IMG/M
3300027860\|Ga0209611_10374550	Not Available	820	Open in IMG/M
3300028562\|Ga0302151_10033810	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae	1866	Open in IMG/M
3300028748\|Ga0302156_10034859	All Organisms → cellular organisms → Bacteria → Proteobacteria	2828	Open in IMG/M
3300028773\|Ga0302234_10150401	Not Available	1014	Open in IMG/M
3300028808\|Ga0302228_10180793	Not Available	965	Open in IMG/M
3300028882\|Ga0302154_10306800	Not Available	779	Open in IMG/M
3300029908\|Ga0311341_10194387	Not Available	1267	Open in IMG/M
3300029911\|Ga0311361_10676280	Not Available	955	Open in IMG/M
3300029918\|Ga0302143_1028584	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1270	Open in IMG/M
3300029945\|Ga0311330_10313587	Not Available	1345	Open in IMG/M
3300029951\|Ga0311371_10415366	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae	1821	Open in IMG/M
3300030044\|Ga0302281_10389086	Not Available	540	Open in IMG/M
3300030399\|Ga0311353_11380769	Not Available	575	Open in IMG/M
3300030520\|Ga0311372_12102987	Not Available	655	Open in IMG/M
3300030973\|Ga0075395_11087130	Not Available	586	Open in IMG/M
3300031236\|Ga0302324_100678531	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Ralstonia → Ralstonia syzygii → Ralstonia syzygii R24	1459	Open in IMG/M
3300031236\|Ga0302324_101157186	Not Available	1035	Open in IMG/M
3300031236\|Ga0302324_101510402	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	872	Open in IMG/M
3300031474\|Ga0170818_109964576	Not Available	766	Open in IMG/M
3300031708\|Ga0310686_100218810	Not Available	505	Open in IMG/M
3300031708\|Ga0310686_106004588	Not Available	1183	Open in IMG/M
3300031708\|Ga0310686_108974008	Not Available	615	Open in IMG/M
3300031708\|Ga0310686_111255312	Not Available	642	Open in IMG/M
3300031708\|Ga0310686_117464634	All Organisms → cellular organisms → Bacteria → Proteobacteria	2016	Open in IMG/M
3300031715\|Ga0307476_10003403	All Organisms → cellular organisms → Bacteria → Proteobacteria	9490	Open in IMG/M
3300031715\|Ga0307476_10741193	Not Available	727	Open in IMG/M
3300031718\|Ga0307474_10007283	All Organisms → cellular organisms → Bacteria	7977	Open in IMG/M
3300032895\|Ga0335074_10024969	All Organisms → cellular organisms → Bacteria → Proteobacteria	8427	Open in IMG/M
3300033402\|Ga0326728_10471077	Not Available	1034	Open in IMG/M
3300034124\|Ga0370483_0270118	Not Available	584	Open in IMG/M
3300034199\|Ga0370514_091022	Not Available	777	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	75.63%
Host-Associated	Host-Associated	24.37%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	49.58%
Aquatic	Environmental → Aquatic	26.05%
Plants	Host-Associated → Plants	24.37%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	33.61%
Freshwater	Environmental → Aquatic → Freshwater	25.21%
Peat Moss	Host-Associated → Plants → Peat Moss	23.53%
Peat	Environmental → Terrestrial → Peat	15.13%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.84%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.84%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.84%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	26.05%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	25.21%
Unclassified	Host-Associated → Plants → Peat Moss → Unclassified	23.53%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	15.13%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	4.20%
Loam	Environmental → Terrestrial → Soil → Loam	3.36%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.84%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.84%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.84%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Peat Moss → Unclassified → Unclassified	23.53%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	15.13%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	15.13%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	14.29%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	10.92%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	9.24%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.36%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.52%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	1.68%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	1.68%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.84%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.84%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.84%

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated	23.53%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	10.92%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	8.40%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	7.56%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	6.72%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	5.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.88%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	5.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.04%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.52%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	2.52%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	1.68%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	1.68%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	1.68%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.84%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.84%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.84%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.84%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	0.84%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.84%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.84%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.84%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	0.84%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.84%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.84%
Quercus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Quercus Rhizosphere	0.84%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000546	Quercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain - LJN_Illumina_Assembled	Host-Associated	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009500	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fc - Sphagnum magellanicum MG	Host-Associated	Open in IMG/M
3300009510	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fd - Sphagnum fallax MG	Host-Associated	Open in IMG/M
3300009633	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_10	Environmental	Open in IMG/M
3300009701	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fc - Sphagnum fallax MG	Host-Associated	Open in IMG/M
3300009709	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fb - Sphagnum magellanicum MG	Host-Associated	Open in IMG/M
3300009787	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fa - Sphagnum fallax MG	Host-Associated	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300014156	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_60_metaG	Environmental	Open in IMG/M
3300014164	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaG	Environmental	Open in IMG/M
3300014168	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_10_metaG	Environmental	Open in IMG/M
3300014169	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaG	Environmental	Open in IMG/M
3300014200	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_30_metaG	Environmental	Open in IMG/M
3300014201	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014838	Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300015160	Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G7C, Adjacent to main proglacial river, mid transect (Watson river))	Environmental	Open in IMG/M
3300015206	Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G8B, Adjacent to main proglacial river, end of transect (Watson river))	Environmental	Open in IMG/M
3300018044	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_10	Environmental	Open in IMG/M
3300019789	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300020061	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2c1	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300022881	Peat soil microbial communities from Stordalen Mire, Sweden - 717 P1 20-24	Environmental	Open in IMG/M
3300024176	Spruce litter microbial communities from Bohemian Forest, Czech Republic ? CLU1	Environmental	Open in IMG/M
3300025463	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_10 (SPAdes)	Environmental	Open in IMG/M
3300025634	Arctic peat soil from Barrow, Alaska - NGEE Surface sample F53-2 shallow-092012 (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027609	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300027783	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027795	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027807	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fd - Sphagnum fallax MG (SPAdes)	Host-Associated	Open in IMG/M
3300027829	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027853	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 (SPAdes)	Environmental	Open in IMG/M
3300027860	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fc - Sphagnum magellanicum MG (SPAdes)	Host-Associated	Open in IMG/M
3300028562	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N1_3	Environmental	Open in IMG/M
3300028748	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N3_2	Environmental	Open in IMG/M
3300028773	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N3_2	Environmental	Open in IMG/M
3300028808	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N1_2	Environmental	Open in IMG/M
3300028882	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N2_3	Environmental	Open in IMG/M
3300029908	II_Bog_E1 coassembly	Environmental	Open in IMG/M
3300029911	III_Bog_N2 coassembly	Environmental	Open in IMG/M
3300029918	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E2_1	Environmental	Open in IMG/M
3300029945	I_Bog_N2 coassembly	Environmental	Open in IMG/M
3300029951	III_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300030044	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_E1_2	Environmental	Open in IMG/M
3300030399	II_Palsa_E2 coassembly	Environmental	Open in IMG/M
3300030520	III_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300030973	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FB6 Emin (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300032895	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3	Environmental	Open in IMG/M
3300033402	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN	Environmental	Open in IMG/M
3300034124	Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_06D_14	Environmental	Open in IMG/M
3300034199	Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_01D_14	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
LJNas_10012911	3300000546	Quercus Rhizosphere	LQHIEHILESLATKTQRVFDTAEGAERHQLLTRRLQQLYGALELARLFEYSRLARRIETQVDAC
Ga0062387_1000010962	3300004091	Bog Forest Soil	MQHFDHILEALATRTQRVFDTALGAERHQLLTRRLHQLYGALELARLFEFGRLARRIETQVDACRRDIEADSGGTS*
Ga0062387_1003725981	3300004091	Bog Forest Soil	MQHFDHILESLATRTQRVFDTARGAERHQLLTRRLYLLYGALELARLLEYGRLARRIETQVDACRRNIEADSGCAP*
Ga0062387_1005745321	3300004091	Bog Forest Soil	MQHFDHILESLATRTQRVFDTALGAERHQLLTRRLYQLYGALELARLFEYGRLARRIETQVDACRRDIEADSGDAS*
Ga0070761_100045018	3300005591	Soil	MQHFDHILDALATRTQRVFDTAQGAERHQLLTRRLYQLYGALELARLLHHSRLARRIETQVDACRRNIETDSGCAS*
Ga0070762_103449501	3300005602	Soil	MQHFDHILESLATRTQRAFDTASGAERHQLLTRRLYQLYGALELARLLEYSRLARRIETQVDACRRNIEADSGCAS*
Ga0073928_110594511	3300006893	Iron-Sulfur Acid Spring	MQHFDHILEALATRTQRVFDTALGEDRHQLLTRRLQQLYGALELARLFEYSRLARRIETQVDAC
Ga0099830_105385541	3300009088	Vadose Zone Soil	HFDHILEALATRTQRVFDTALGADRNQLLPRRLHQLYGALELARLFEYGRLARRIETQVDACRRNIEAD*
Ga0116229_101155184	3300009500	Host-Associated	MQHFDHILAALATKTQRVFDTAQGAERHQLLTRRLYQLYGALELARLLEYGRLARRIETQVDACRRDIEAGSGGAS*
Ga0116229_101678782	3300009500	Host-Associated	MQHFDHILEALATKTQRVFDTALGADRHQLLTRRLHQLYGALELARLFEFGRLARRIETQVDACRRDIEADSGGAS*
Ga0116229_102122752	3300009500	Host-Associated	MQHFDHILEALATRTQRVFDTALGADRHQLLTRRLHQLYGALELARLFEYGRLARCIETQVDACRRDIEADSGGAS*
Ga0116229_104287822	3300009500	Host-Associated	MQHFDYILAVLATRTQRVFDTALGAERHQLLTRRLYQLYGALELARLFEYSRLARRIETQVDACRRDIEADSGGAS*
Ga0116229_105270903	3300009500	Host-Associated	MQHLDHILEALATRTQRVFDTALGTERHQLLTGRLHQLYGALELARLLEHSRLAWRIETQLDACRRNIEAD*
Ga0116229_106109162	3300009500	Host-Associated	MQNFDHILDALATKTQRVFDTALGAERHQLLTRRLYQLYGALELARLLEHSRIARRIETQVDACRRNIEADSGCAS*
Ga0116229_106775691	3300009500	Host-Associated	MQHFDHILESLATRTQRVFDTALDEDRHQLLTRRLYQLYGALLARLLEHSRLARRIETQVDACRRNIEADSGRCES*
Ga0116229_107271512	3300009500	Host-Associated	MQHFDHILEALARRTQRVFDTALGAERHQLLTRRLYQLYGALELARLLEHSRLARRIETQVDACRRNIETDSGCAS*
Ga0116230_100914852	3300009510	Host-Associated	MQNLDHILAELAARTQRVFDTALGPERHELLNRRHQQLAGALELARLLQLGRLARRIETQIDACRRNIDAE*
Ga0116230_101144442	3300009510	Host-Associated	MQHFDHILESLATRTQRVFDTALGAERHQLLNRRLYQLYGALELARLLEHSRLARRIETQVDACRRNIEIDSGCAS*
Ga0116230_102160472	3300009510	Host-Associated	MQHFDHILEALATRTQRVFDTALGADRHQLLTRRLHQLYGALELARLFEFGRLARRIETQVDACRRDIEADSGRAS*
Ga0116230_103687862	3300009510	Host-Associated	MHNLDHILEALATRTQRLFDTALGAERHQLLTRRLYQLYGALELARLLEHSRLVRRIETQVDACRRNIEADSGTAAS*
Ga0116230_106430932	3300009510	Host-Associated	MHNFDHILEALATRTQRVFDAALGAERHQLLTRRLYQLYGALELARLLEHSRLARRIETQVDACRRNIEAD*
Ga0116129_10076275	3300009633	Peatland	MQHFDHILEALATRTQRVFDTARGADRHQLLTRRLYQLYGALELARLFEYGRLARRIETQVDACRRNIEADSGRCES*
Ga0116129_10102644	3300009633	Peatland	MQHFDHIFEALATRTQRVFDTALGAERHQLLTRRLYQLYGALELARLLEHGRLARRIETQVDACRRNIEADSGCAS*
Ga0116129_10142352	3300009633	Peatland	MQHLDHILEALATRTQRVFDTALGAERHQLLNRRLYQLYGALELARLLEHSRLARRIETQVDACRRNIEAD*
Ga0116129_10453652	3300009633	Peatland	MHNVDHILESLATRTQRVFDTALGAERHQLLTRRLYQLYGALELARLLEHSRLARRIETQVDACRRNIEADSGASAS*
Ga0116129_10570272	3300009633	Peatland	MQHFDHILESLATRTQRVFDTALGAERHQLLTRRLYQLYGALELARLLEYGRLARRIETQLDACRRNIEAE*
Ga0116129_10610091	3300009633	Peatland	MLHFDHILESLATKTQRVFDTALGADRHQLLMRRLYQLYGALEMARLLHHSRLARRIETQIDACRRDIEADSGCTP*
Ga0116129_10825672	3300009633	Peatland	MQHFDHILEALATRTQRVFDTALGEDRHQLLTRRLYQLYGALELARLLEHSRLARRIETQVDACRRNIEADSGCAS*
Ga0116228_105792032	3300009701	Host-Associated	MPNLDQILDALATRTQRVFDTAIGEDRHQLLTRRLQQLYGALELARLFEYGRLARRIEAQVDACRRNIDAE*
Ga0116227_100294112	3300009709	Host-Associated	MQHFDHILAALATKTQRVFDTAQGAERHQLLTRRLYQLYGALELARLLEYGRLARRIETQVDACRRDIEADSGGAS*
Ga0116227_101144901	3300009709	Host-Associated	MQHFDHILEALATRTQRVFDTALGADRHQLLTRRLHQLYGALELARLFEYGRLARRIETQVDACRREIEADSGGAS*
Ga0116227_101614071	3300009709	Host-Associated	MQHFDHILEALATRTQRVFDTALGEDRHQLLTRRLYQLYGALELARLLEHSRLVRRIETQVDACRRNIEAD
Ga0116227_107325981	3300009709	Host-Associated	HILEALATRTQRVFDTALGADRHQLLTRRLHQLYGALELARLFEFGRLARRIETQVDACRRDIEADSGGAS*
Ga0116226_101854771	3300009787	Host-Associated	MHNLDHILEALATRTQRLFDTALGAERHQLLTRRLYQLYGALELARLLEHSRLVRRIETQVDACRRNIEADSGT
Ga0116226_108712941	3300009787	Host-Associated	MQHFDHILKALATRTQGVFDTALGAERHQLLTRRLYQLYGALELARLFEYRRLARRIETQVDACRRDIEADSGGAS*
Ga0116226_113108111	3300009787	Host-Associated	RTQRVFDTALGEDRHQLLTRRLYQLYGALELARLLEHSRLARRIETQVDACRRNIEADSGCAS*
Ga0137393_103903903	3300011271	Vadose Zone Soil	MQHFDHILEALATRTQRVFDTALGADRHQLLTRRLHQLYGALELARLFEYGRLARRIETQVDACRRNIEAD*
Ga0137358_103599861	3300012582	Vadose Zone Soil	MQHFDHILESLATRTQLVFDTAPGAERHQLLTRRLYQLYGALELARLFEYGHLVRRIEAQVDACRRDIEADSGSCAS*
Ga0137359_101612222	3300012923	Vadose Zone Soil	MQHFDHILESLATRTQRVFDTAPGAERHQLLTRRLYQLYGALELARLFEYGHLVRRIEAQVDACRRDIEADSGSCAS*
Ga0137404_100095832	3300012929	Vadose Zone Soil	MQHFDHILDALATKTQRVFDTAHGAERHQLLTRRLYQLYGALELARLFEYSRLARRIETQVDACRRDIEADSGGAS*
Ga0137404_103551721	3300012929	Vadose Zone Soil	MQHFDHILDALATKTQRVFDTALGAERHQLLTRRLYQLYGALELARLFEYGRLARRIETQVDACRRDIEADSGTRAS*
Ga0137404_106427002	3300012929	Vadose Zone Soil	MQNFDHILESLAARTQRVFDTAHGAERHQLLTRRLHQLYGALELARLLEYGRLVRRIETQVDACRRNIEVDSGTCAS*
Ga0181518_103268861	3300014156	Bog	MHNVDHILEALATRTQRVLDTALGAERHQLLTRRLYQLYGALELARLLEHSRLARRIEKQVDACRRNIETDSGCAS*
Ga0181532_100435682	3300014164	Bog	MEHFDHILESLATRTQRVFDTALGADRHQLLTRRLYQLYGALELARLLEHSRLARRIETQVDACRRNIEADSGRAS*
Ga0181534_101637331	3300014168	Bog	MQHFDHILEALATRTQRVFDTALGEDRHQLLTRRLYQLYGALELARLLEHSRLARRIETQVDACRRNIEADSGTAAS*
Ga0181534_102552562	3300014168	Bog	MQHFDHILEALATRTQRVFDTALGADRHQLLTRRLHQLYGALELARLFEYGRLARRIETQVDACRRDIEADSGGAS*
Ga0181534_104467741	3300014168	Bog	MQHFDHILEALATKTQRVFDTALGAERHQLLTRRLYQLYGALELARLLEFGRLARRIETQVDACRRNIEADSGSAS*
Ga0181531_102954673	3300014169	Bog	MHNVDHILETLATRTQRVFDTALGEDRHQLLTRRLYQLYGALELARLLEHSRLARRIETQVDACRRNIEADSGTAAS*
Ga0181526_105493632	3300014200	Bog	MQHLDHILEALATRTQRVFDTALGTERHQLLTRRLHQLYGVLELARLLEYSRLARRIETQLDACRRNIEAD*
Ga0181537_1000259721	3300014201	Bog	MQHFDHILEALATRTQRVFDTALGEDRHQLLTRRLYQLYGALELARLLEHSRLARRIETHVDACRRNIEADSGCAS*
Ga0181537_100093528	3300014201	Bog	MQHFDHIVEALATRTQRIFDTALGAERHQLLTRRLYQLYGALELARLLEHSRLARRIETQVDACRRNIEADSGTAAS*
Ga0182024_109695732	3300014501	Permafrost	MQHFDHILESLATKTQRVFDTALGAERHQLLTRRLYQLYGALELARLFEYGRLARRIETQVDACRRDIEAD*
Ga0182030_101445123	3300014838	Bog	MQHFDHILEALATRTQRVFDTALGAERHQLLTRRLYQLYGALELARLLEYGRLARRIETQVDACRRNIEADSGTSAS*
Ga0167642_10033472	3300015160	Glacier Forefield Soil	MQHFDHILESLATRTQRVFDTAHGAERHQLLTRRLYQLYGALELARLIEYGRLARRIETQVDACRRNIEAESGRCDS*
Ga0167644_10182963	3300015206	Glacier Forefield Soil	MQHFDHILDALATRTQRVFDTALGAERHQLLTRRLHQLYGALELARLIEHSRLARRIETQVDACRRNIEADSGTSAS*
Ga0187890_105195151	3300018044	Peatland	LATRTQRVFDTAIGAERHQLLMRRLYELYGALELARLLHHGTLARRIETQVDACRRDIEA
Ga0137408_12522667	3300019789	Vadose Zone Soil	MQHFDHILDALATKTQRVFDTALGAERHQLLTRRLYQLYGALELARLFEYGRLARRIETQVDACRRDIEADSGTRAS
Ga0137408_12769712	3300019789	Vadose Zone Soil	MQHFDHILDALATKTQRVFDTAHGAERHQLLTRRLYQLYGALELARLFEYSRLARRIETQVDACRRDIEADSGGAS
Ga0193716_10024297	3300020061	Soil	MQHFDHILDALATKTQRVFDTALGAERHQLLTRRLYQLYGALELARLFEYGRLARRIETQVDACRRDIEADSGCAS
Ga0210403_100092267	3300020580	Soil	MHNVNHTLEALAARTQRVFDTALGAERHQLLTRRLYQLYGALELARLLEHSRLARRIETQVDACRRNIEADSGTSAS
Ga0210391_101513481	3300021433	Soil	MQHFDHILESLATRTQRAFDTASGAERHQLLTRRLYQLYGALELARLLEYSRLARRIETQVDACRRNIEADSGCAS
Ga0210392_100945064	3300021475	Soil	MQHFDHILDALATKTQRVFDTALGAERHQLLTRRLYQLYGALELARLFEYGRLARHIETQVDACRRDIEAD
Ga0210402_109617641	3300021478	Soil	MQHFDHILESLATRTQRVFDTALGAERHQLLTRRLYQLYGALELARLLEYGRLARRIETQVDACRRNIEADSGCAS
Ga0210410_106565263	3300021479	Soil	MQNFDHILDALATRTQRVFDTALGAERHQLLTRRLYQLYGALELARLFEYGRLARRIETQVDACRRNIDAE
Ga0210410_112062122	3300021479	Soil	MQHFDHILESLATRTQRVFDTALGAERHQLLTRRLYQLYGALELARLFEYGRLARRIETQVDACRRDIEADSGGAS
Ga0224545_10505572	3300022881	Soil	MQHFDHILESLATRTQRVFDTALGAERHQLLTRRLYQLYGALELARLFEYGRLARRIETQVDACRRDIEADSGRAS
Ga0224565_10008572	3300024176	Plant Litter	MQHFDNILEALATRTQRAFDTALGEDRHQLLTRRLHQLYGALELARLFECGRLARRIETQVDACRRNIEADSGRCES
Ga0208193_10015159	3300025463	Peatland	MHNVDHILESLATRTQRVFDTALGAERHQLLTRRLYQLYGALELARLLEHSRLARRIETQVDACRRNIEADSGASAS
Ga0208193_10020849	3300025463	Peatland	MQHFDHIFEALATRTQRVFDTALGAERHQLLTRRLYQLYGALELARLLEHGRLARRIETQVDACRRNIEADSGCAS
Ga0208193_10060932	3300025463	Peatland	MQHFDHILEALATRTQRVFDTARGADRHQLLTRRLYQLYGALELARLFEYGRLARRIETQVDACRRNIEADSGRCES
Ga0208193_10116832	3300025463	Peatland	MQHLDHILEALATRTQRVFDTALGAERHQLLNRRLYQLYGALELARLLEHSRLARRIETQVDACRRNIEAD
Ga0208193_10329271	3300025463	Peatland	MQHFDHILESLATRTQRVFDTALGAERHQLLTRRLYQLYGALELARLLEYGRLARRIETQLDACRRNIEAE
Ga0208193_10502151	3300025463	Peatland	MQHFDHILEALATRTQRVFDTALGEDRHQLLTRRLYQLYGALELARLLEHSRLARRIETQVDACRRNIEADSGCAS
Ga0208589_10770052	3300025634	Arctic Peat Soil	MEHFDHILESLTTKTQRVFDTALGAERHQLLTRRLYQLYGALELARLIEYGRLARRIETQVDACRCNIEADSGRCES
Ga0208589_11225671	3300025634	Arctic Peat Soil	MQHFDHILETLATKTQRVFDTAIGAERHQLLTRRLYQLYGALELARLLEYSRLARRIETQVDACRRNIEADSGCAP
Ga0179587_105867261	3300026557	Vadose Zone Soil	MQHFDHILDALATKTQRVFDTALGAERHQLLTRRLYQLYGALELARLLEYSRLARRIETQVDACRRNIEAE
Ga0209221_11024831	3300027609	Forest Soil	MQHFDHILEALARRTQRVFDTALGADRHQLLTRRLYQLYGALELARLLEHSRLARRIETQVDACRRNIEADSGTASS
Ga0209448_102805572	3300027783	Bog Forest Soil	MQHFDHILESLATRTQRVFDTALGAERHQLLTRRLYQLYGALELARLFEYGRLARRIETQVDACRRDIEADSGDAS
Ga0209139_101192271	3300027795	Bog Forest Soil	MQHFDHILESLATRTQRVFDTARGAERHQLLTRRLYLLYGALELARLLEYGRLARRIETQVDACRRNIEADSGCAP
Ga0209139_101412402	3300027795	Bog Forest Soil	MQHFDHILEALATRTQRVFDTALGAERHQLLTRRLHQLYGALELARLFEFGRLARRIETQVDACRRDIEADSGGTS
Ga0209208_100144127	3300027807	Host-Associated	MHNLDHILEALATRTQRLFDTALGAERHQLLTRRLYQLYGALELARLLEHSRLVRRIETQVDACRRNIEADSGTAAS
Ga0209208_100924242	3300027807	Host-Associated	MQNLDHILAELAARTQRVFDTALGPERHELLNRRHQQLAGALELARLLQLGRLARRIETQIDACRRNIDAE
Ga0209208_101887612	3300027807	Host-Associated	MQHFDHILESLATRTQRVFDTALGAERHQLLNRRLYQLYGALELARLLEHSRLARRIETQVDACRRNIEIDSGCAS
Ga0209208_102504552	3300027807	Host-Associated	MQHFDHILEALATRTQRVFDTALGADRHQLLTRRLHQLYGALELARLFEFGRLARRIETQVDACRRDIEADSGRAS
Ga0209773_104465301	3300027829	Bog Forest Soil	MQHFDHILESLATRTQRVFDTALGAERHQLLTRRLYQLYGALELARLLEHSRLARCIETQVDACRRNIEADSGCES
Ga0209274_10000017173	3300027853	Soil	MQHFDHILDALATRTQRVFDTAQGAERHQLLTRRLYQLYGALELARLLHHSRLARRIETQVDACRRNIETDSGCAS
Ga0209611_101078934	3300027860	Host-Associated	MQHFDHILEALATKTQRVFDTALGADRHQLLTRRLHQLYGALELARLFEFGRLARRIETQVDACRRDIEADSGGAS
Ga0209611_103398073	3300027860	Host-Associated	MQHFDHILEALATRTQRVFDTALGAERHPLLTRRLYQLYGALELARLLEHSRLARRIETQVDACRRNIEAE
Ga0209611_103745501	3300027860	Host-Associated	MQHFDYILAVLATRTQRVFDTALGAERHQLLTRRLYQLYGALELARLFEYSRLARRIETQVDACRRDIEADSGGAS
Ga0302151_100338102	3300028562	Bog	MQHFDHILEALATRTQRVFDTALGAERHQLLTRRLYQLYGALELARLLEHSRLARRIETQVDACRRNIETDSGCAS
Ga0302156_100348596	3300028748	Bog	MQHFDHILEALATRTQRVFDTALGADRHQLLTRRLHQLYGALELARLFECGRLARRIETQVDACRRDIEADSGGAS
Ga0302234_101504011	3300028773	Palsa	MQHFDHILEALATRTQCVFDTAVGAERHQLLTRRLYQLYGALELARLFEYGRLARRIETQVDACRRNIEADSGRCES
Ga0302228_101807933	3300028808	Palsa	ILEALATRTQCVFDTAVGAERHQLLTRRLYQLYGALELARLFEYGRLARRIETQVDACRRNIEADSGRCES
Ga0302154_103068002	3300028882	Bog	MQNFDHILESLATRTQRVFDTALGEDRHQLLTRRLYQLYGALELARLFEFGRLARRIETQVDACRRN
Ga0311341_101943872	3300029908	Bog	MQHFDHILEALATRTQRVFDTALGAERHQLLTRRLYQLYGALELARLLEHSRLARRIETQVDACRRNIETESGCAS
Ga0311361_106762802	3300029911	Bog	MQHFDQILESLATRTQRVFDTALGAERHQLLTRRLYQLYGALELARLLEHSRLARRIETQVDACRRNIETDSGCAS
Ga0302143_10285843	3300029918	Bog	MQHFDHILEALATRTQRVFDTALSEDRHQLLTRRLYQLYGALELARLLEHSRLARRIETQVDACRRNIETDSGCAS
Ga0311330_103135872	3300029945	Bog	MQNFDHILESLATRTQRVFDTALGEDRHQLLTRRLYQLYGALELARLFEFGRLARRIETQVDACRRNIEAE
Ga0311371_104153662	3300029951	Palsa	MQHFDHILDALATKTQRVFDTALGEDRHQLLTRRLYQLYGALELARLFEYGRLARRIETQVDACRRNIEAE
Ga0302281_103890862	3300030044	Fen	MQHLDHILEALATRTQRVFDTALGAERHQLLTRRLYQLYGALELARLLEHSRLARRIETQVDACRRNIETDSGCAS
Ga0311353_113807691	3300030399	Palsa	MQHFDHILDALATKTQRVFDTALGADRHQLLTRRLHQLYGALELARLFEYGRLARRIETQVDACRRNIEADSGR
Ga0311372_121029872	3300030520	Palsa	MQHFDHILETLATKTQRVFDTAIGAERHQLLTRRLYQLYGALELARLLEYSRLARRIETQVDACRRNIEAD
Ga0075395_110871301	3300030973	Soil	MQHLDHILDALATKTQRVFDTAHGADRHQLLTRRLYQLYGALELARLFEYGRLARRIETQVD
Ga0302324_1006785312	3300031236	Palsa	MQHVDYILEALATRTQRVFDTALGAERHQLLTRRLHQLYGALELARLLEYSRLARRIETQVDAC
Ga0302324_1011571862	3300031236	Palsa	MQNFDHILDALATRTQRVFDTALGEDRHQLLTRRLYQLYGALELARLFEYGRLARRIETQVDACRRNIEADSGTSAS
Ga0302324_1015104023	3300031236	Palsa	MQHFDHILESIATRTQRVFDTAIGEDRHQLLTRRLYQLYGALELARLLEYGRLARRIETQVDACRRNIEADSGCAP
Ga0170818_1099645762	3300031474	Forest Soil	MQHLDHILDALATKTQRVFDTAHGADRHQLLTRRLYQLYGALELARLFEYGRLARRIETQVDACRRNIEAE
Ga0310686_1002188101	3300031708	Soil	KSPMQHFDHILETLATKTQRVFDTAIGAERHQLLTRRLYQLYGALELARLLEYSRLARRIETQVDACRRNIEAD
Ga0310686_1060045882	3300031708	Soil	MQHFDHILESLATRTQRVFDTALGAERHQLLTRRLYQLYGALELARLLEYSRLARRIETQVDACRRDIEADSGTCAS
Ga0310686_1089740082	3300031708	Soil	MQHVDHILEALATRTQRVFDTALGAERHQLLTRRLYQLYGALELSRLLEYSRLARRIETQVDACRRNIEAD
Ga0310686_1112553122	3300031708	Soil	MQHVDHILESLATRTQRVFDTALGAERHQLLTRRLYQLYGALELARLLEYSRLARRIETQVDACRRNIEAD
Ga0310686_1174646341	3300031708	Soil	MQHFDHILESLATRTQRVFDTALGAQRHQLLTRRLYQLYGALELARLFEYSRLARRIETQIDACRRDIEADS
Ga0307476_100034037	3300031715	Hardwood Forest Soil	MQHFDHILEALATRTQRVFDTALGAERHQLLTRRLYQLYGALELARLFEYSRLARRIETQVDACRRNIEADGGISS
Ga0307476_107411931	3300031715	Hardwood Forest Soil	MQHFDHILESFATRTQRVFDTALGAERHQLLTRRLYQLYGALELARLLEYGRLARRIETQLDACRRNIEAE
Ga0307474_100072839	3300031718	Hardwood Forest Soil	MQHFDHILESFATRTQRVFDTALGAERHQLLTRRLYQLYGALELARLLEYGRLARRIETQLDACRRKIEAE
Ga0335074_100249693	3300032895	Soil	MQHFDHILEALATRTQHVFDTALGSERHQLLTRRLYQLYGALELARLLEYSRLARRIETQVDACRRNIEADSGCAP
Ga0326728_104710772	3300033402	Peat Soil	MQHFDHILESLATRTQRVFDTALGAERHQLLTRRLYQLYGALELARLFEYGRLARRIETQVDACRRDIEADSGCSS
Ga0370483_0270118_73_312	3300034124	Untreated Peat Soil	MQNFDHILDALATKTQRAFDTALGAERHQLLTRRLYQLYGALELARLLKLNYGALTRHIETQIDACRRDIEADSGCAPR
Ga0370514_091022_274_513	3300034199	Untreated Peat Soil	MQHFDHILDALATRTQRVFDTALGAERHQLLTRRLYQLYGALELARLLKLNYGALTRHIETQIDACRRDIEADSGCAPR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F074482

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences