Metagenome / Metatranscriptome Family F074468

Basic Information
Family ID	F074468
Family Type	Metagenome / Metatranscriptome
Number of Sequences	119
Average Sequence Length	50 residues
Representative Sequence	MAVDIVKLAPESFRTIYLRKEDRIILRTEQGRKIIIKRIIPDEWKP
Number of Associated Samples	103
Number of Associated Scaffolds	119

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	100.00 %
% of genes near scaffold ends (potentially truncated)	93.28 %
% of genes from short scaffolds (< 2000 bps)	89.92 %
Associated GOLD sequencing projects	97
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.35

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (81.513 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh (19.328 % of family members)
Environment Ontology (ENVO)	Unclassified (41.176 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (87.395 % of family members)

Multiple Sequence Alignments

Select alignment to view:

Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76. 1QL_na_5023360 22226245197 3none_1703582 4OpTDRAFT_100370844 5OpTDRAFT_101596243 6OpTDRAFT_102024433 7OpTDRAFT_102060853 8NpDRAFT_104794884 9BpDRAFT_100974591 10BpDRAFT_101095439 11ACM18_10970781 12Ga0070748_11170413 13Ga0070752_11225771 14Ga0070752_14015482 15Ga0099849_13391142 16Ga0099847_11467571 17Ga0099847_12534531 18Ga0102820_10217011 19Ga0102821_11206781 20Ga0102821_11419771 21Ga0102902_12567292 22Ga0102910_10190603 23Ga0102910_10597711 24Ga0102867_10602623 25Ga0099850_11447711 26Ga0102907_11592471 27Ga0114841_12631222 28Ga0102813_11189113 29Ga0102813_11335383 30Ga0102905_11433622 31Ga0102812_104823981 32Ga0114994_101498433 33Ga0115008_105384813 34Ga0115570_101279491 35Ga0115003_104285661 36Ga0115000_103541731 37Ga0098056_11517033 38Ga0129351_13840921 39Ga0181390_10700363 40Ga0181381_10742593 41Ga0181392_11353203 42Ga0181422_12009252 43Ga0181422_12318811 44Ga0181565_1000225125 45Ga0181571_105975281 46Ga0181582_109047702 47Ga0181581_108384082 48Ga0181590_105976301 49Ga0181569_101399483 50Ga0181601_103523983 51Ga0181606_107184891 52Ga0181572_101656761 53Ga0181572_105496771 54Ga0181561_105502222 55Ga0181592_107187523 56Ga0181591_111492451 57Ga0194024_11609342 58Ga0181575_104997741 59Ga0181573_102307391 60Ga0181573_104400341 61Ga0181578_101417433 62Ga0181604_102827361 63Ga0181570_103153491 64Ga0206682_101072391 65Ga0206682_101715163 66Ga0213867_10222581 67Ga0210307_10218613 68Ga0213859_102140541 69Ga0213860_101513041 70Ga0213865_102679021 71Ga0213866_105686802 72Ga0212030_10292513 73Ga0212021_10696881 74Ga0196905_11207181 75Ga0222646_1018428 76Ga0255771_10208859 77Ga0255781_100006101 78Ga0255770_104915781 79Ga0255754_100646001 80Ga0228682_10240311 81Ga0233438_100632031 82Ga0233438_103951921 83Ga0233439_101000031 84Ga0233439_103754771 85Ga0228610_10204884 86Ga0228664_11000581 87Ga0233398_10795453 88Ga0228631_10405291 89Ga0228659_10342083 90Ga0244776_101674351 91Ga0244776_105994321 92Ga0233393_11098652 93Ga0209138_11274623 94Ga0209659_12292902 95Ga0208162_11812722 96Ga0209771_12046422 97Ga0208427_11570831 98Ga0209534_104479521 99Ga0209309_103399473 100Ga0209630_103543462 101Ga0247578_11130152 102Ga0247605_10218623 103Ga0208921_10258111 104Ga0208927_10657063 105Ga0208172_10501613 106Ga0208678_10925692 107Ga0208897_11623072 108Ga0208304_102608682 109Ga0209192_100177786 110Ga0209502_103409623 111Ga0228674_12057742 112Ga0228634_10177061 113Ga0247601_10287262 114Ga0302126_101305353 115Ga0307997_102932041 116Ga0315320_108968981 117Ga0315321_107100092 118Ga0316204_106731971 119Ga0334982_0449980_1_171
Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76. 1QL_na_5023360 22226245197 3none_1703582 4OpTDRAFT_100370844 5OpTDRAFT_101596243 6OpTDRAFT_102024433 7ACM18_10970781 8Ga0070748_11170413 9Ga0070752_11225771 10Ga0099847_11467571 11Ga0099847_12534531 12Ga0102821_11419771 13Ga0102910_10597711 14Ga0102907_11592471 15Ga0114841_12631222 16Ga0115570_101279491 17Ga0181581_108384082 18Ga0181606_107184891 19Ga0181572_101656761 20Ga0181592_107187523 21Ga0194024_11609342 22Ga0213867_10222581 23Ga0212030_10292513 24Ga0334982_0449980_1_171
Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46 1Ga0181392_11353203 2QL_na_5023360 3none_1703582 4Ga0070748_11170413 5Ga0070752_14015482 6Ga0099847_11467571 7Ga0099847_12534531 8Ga0102821_11206781 9Ga0099850_11447711 10Ga0114841_12631222 11Ga0115003_104285661 12Ga0181381_10742593 13Ga0181572_105496771 14Ga0181561_105502222 15Ga0194024_11609342 16Ga0181573_102307391 17Ga0181573_104400341 18Ga0213859_102140541 19Ga0213860_101513041 20Ga0213865_102679021 21Ga0213866_105686802 22Ga0212021_10696881 23Ga0222646_1018428 24Ga0209659_12292902 25Ga0208427_11570831 26Ga0209309_103399473 27Ga0209630_103543462 28Ga0307997_102932041 29Ga0316204_106731971 30Ga0334982_0449980_1_171
Powered by MSAViewer

Neighboring Clusters of Orthologous Genes (COGs)

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 4.05% β-sheet: 13.51% Coil/Unstructured: 82.43%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
Powered by Feature Viewer

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.35
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.35
Powered by PDBe Molstar

Pfam ID	Name	% Frequency in 119 Family Scaffolds
PF11246	Phage_gp53	84.87
PF12322	T4_baseplate	1.68
PF08722	Tn7_TnsA-like_N	1.68
PF05496	RuvB_N	0.84
PF11056	UvsY	0.84

COG ID	Name	Functional Category	% Frequency in 119 Family Scaffolds
COG2255	Holliday junction resolvasome RuvABC, ATP-dependent DNA helicase subunit RuvB	Replication, recombination and repair [L]	0.84

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	97.48 %
Unclassified	root	N/A	2.52 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	81.51 %
Unclassified	root	N/A	2.52 %
Viruses	superkingdom	All Organisms → Viruses	15.97 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	81.51 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	6.72 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	6.72 %
Unclassified	root	N/A	2.52 %

Name	Rank	Taxonomy	Distribution
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	6.72 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	6.72 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	79.83 %
Unclassified	root	N/A	2.52 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	79.83 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	6.72 %
Unclassified	root	N/A	2.52 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	6.72 %

Name	Rank	Taxonomy	Distribution
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	6.72 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	6.72 %
Unclassified	root	N/A	2.52 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	79.83 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium TMED194	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium TMED194	79.83 %
Caudovirales	order	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	6.72 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	6.72 %
Unclassified	root	N/A	2.52 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium TMED194	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium TMED194	79.83 %
Myoviridae	family	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae	5.88 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	6.72 %
Unclassified	root	N/A	2.52 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium TMED194	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium TMED194	79.83 %
Emdodecavirus	genus	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Emdodecavirus	1.68 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	6.72 %
Unclassified	root	N/A	2.52 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium TMED194	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium TMED194	79.83 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	6.72 %
Sinorhizobium virus N3	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Emdodecavirus → Sinorhizobium virus N3	1.68 %
Unclassified	root	N/A	2.52 %

Visualization
Download SVG Download PNG Download CSV
Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
(restricted) 3300024255\|Ga0233438_10063203	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium TMED194	1817	Open in IMG/M
(restricted) 3300024255\|Ga0233438_10395192	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium TMED194	505	Open in IMG/M
(restricted) 3300024261\|Ga0233439_10100003	All Organisms → Viruses → Predicted Viral	1487	Open in IMG/M
(restricted) 3300024261\|Ga0233439_10375477	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium TMED194	589	Open in IMG/M
2022920000\|QLn_FQAYR3Y01EWHL9	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium TMED194	517	Open in IMG/M
2225789001\|2226150600	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium TMED194	522	Open in IMG/M
2236876005\|none_p170358	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium TMED194	519	Open in IMG/M
3300000928\|OpTDRAFT_10037084	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium TMED194	1700	Open in IMG/M
3300000928\|OpTDRAFT_10159624	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium TMED194	1293	Open in IMG/M
3300000928\|OpTDRAFT_10202443	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium TMED194	1170	Open in IMG/M

Showing 1 to 10 of 117 entries

Previous1 2 3 4 5…12Next

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	2.52%
Marine	Environmental → Aquatic → Marine	94.96%
Non-Marine Saline And Alkaline	Environmental → Aquatic → Non-Marine Saline And Alkaline	2.52%

Habitat	Taxonomy	Distribution
Coastal	Environmental → Aquatic → Marine → Coastal	26.05%
Inlet	Environmental → Aquatic → Marine → Inlet	3.36%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	42.86%
Lake	Environmental → Aquatic → Freshwater → Lake	1.68%
Neritic Zone	Environmental → Aquatic → Marine → Neritic Zone	7.56%
Oceanic	Environmental → Aquatic → Marine → Oceanic	7.56%
Pelagic	Environmental → Aquatic → Marine → Pelagic	1.68%
River	Environmental → Aquatic → Freshwater → River	0.84%
Saline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline	2.52%
Strait	Environmental → Aquatic → Marine → Strait	4.20%
Unclassified	Environmental → Aquatic → Marine → Unclassified	1.68%

Habitat	Taxonomy	Distribution
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	17.65%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	19.33%
Sediment	Environmental → Aquatic → Marine → Coastal → Sediment	0.84%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	25.21%
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	7.56%
Unclassified	Environmental → Aquatic → Marine → Neritic Zone → Unclassified	7.56%
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	5.88%
Unclassified	Environmental → Aquatic → Marine → Strait → Unclassified	4.20%
Unclassified	Environmental → Aquatic → Marine → Inlet → Unclassified	3.36%
Unclassified	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified	2.52%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	1.68%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	1.68%
Unclassified	Environmental → Aquatic → Marine → Pelagic → Unclassified	1.68%
Unclassified	Environmental → Aquatic → Freshwater → River → Unclassified	0.84%

Habitat	Taxonomy	Distribution
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	10.08%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	16.81%
Estuarine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine	0.84%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	0.84%
Freshwater	Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater	0.84%
Freshwater And Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Freshwater And Marine	5.88%
Freshwater To Marine Saline Gradient	Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient	0.84%
Freshwater, Plankton	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton	0.84%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	6.72%
Marine	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine	2.52%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	0.84%
Marine Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Marine Estuarine	0.84%
Marine Plankton	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Plankton	0.84%
Microbial Mat	Environmental → Aquatic → Marine → Coastal → Sediment → Microbial Mat	0.84%
Pelagic Marine	Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine	1.68%
Pelagic Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine	1.68%
Saline Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water	1.68%
Saline Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water	0.84%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	19.33%
Seawater	Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater	14.29%
Seawater	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater	4.20%
Seawater	Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater	3.36%
Seawater	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater	3.36%

Visualization
Download SVG Download PNG Download CSV
Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2022920000	Saline water microbial communities from Qinghai Lake, Tibetan Plateau - High mountain lake (unassembled)	Environmental	Open in IMG/M
2225789001	Saline water microbial communities from Qinghai Lake, Tibetan Plateau -Sample 11638	Environmental	Open in IMG/M
2236876005	Estuarine microbial communities from Columbia River, sample from South Channel ETM site, GS313-3LG-ETM-15m	Environmental	Open in IMG/M
3300000928	Marine plume microbial communities from the Columbia River - 25 PSU	Environmental	Open in IMG/M
3300000929	Marine plume microbial communities from the Columbia River - 15 PSU	Environmental	Open in IMG/M
3300000930	Marine microbial communities from the coastal margin of the Columbia River, USA - 33 PSU, 16m	Environmental	Open in IMG/M
3300001778	Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - ACM18, ROCA_DNA027_0.2um_3g	Environmental	Open in IMG/M
3300006920	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12	Environmental	Open in IMG/M
3300007345	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30	Environmental	Open in IMG/M
3300007539	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG	Environmental	Open in IMG/M

Showing 1 to 10 of 103 entries

Previous1 2 3 4 5…11Next

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
QL_na_5023360	2022920000	Saline Water	MAAVDEIILAPESFRTIYLRREDRVILRTENGRKIIVKRIIPEEWEAYRIYDYENTNKRK
2226245197	2225789001	Saline Water	MAAVDEIILAPESFRTIYLRREDRVILRTENGRKNY
none_1703582	2236876005	Marine Estuarine	MAAVDDIILALESFRTIYLRREDRVILRTEQGRKIIVKRIIPEEWQPYRMYDYEYDLNENKKEYSCLTVNSLGLVN
OpTDRAFT_100370844	3300000928	Freshwater And Marine	MAAIDDIILAPESFQTIYLRREDRVIMRTERGAKIIIKRIIP
OpTDRAFT_101596243	3300000928	Freshwater And Marine	MAVDIVKLAPESFQTIYLRKEDRIVLRTEQGRKIIIKR
OpTDRAFT_102024433	3300000928	Freshwater And Marine	MAVDIVKLAPESFQTIYLRKEDRIILRTEQGRKIIIKRIIPSEWRPWKVYDQELAENENKKEIFLI
OpTDRAFT_102060853	3300000928	Freshwater And Marine	MAVDIVKLAPESFRTIYLRKEDRIILRTEQGRKIIIKRIIPDEWKPWKLYDQELADNNNKKEIFL
NpDRAFT_104794884	3300000929	Freshwater And Marine	MAAVDDIILAPESFRTIYLRREDRVILRTEQGRKIIVKRIIPEEWQPYRMYDYEYD
BpDRAFT_100974591	3300000930	Freshwater And Marine	MAVDIVKLAPESFRTIYLRKEDRVILRTEQGRKIIIKRI
BpDRAFT_101095439	3300000930	Freshwater And Marine	MAVDIVKLAPESFRTIYLRKEDRIILRTEQGRKIIIKRI
ACM18_10970781	3300001778	Marine Plankton	MAVEIVKLAPESFRTIYLRKEDRVILRTETGRKIIIKRIIPDEWKPWKIY
Ga0070748_11170413	3300006920	Aqueous	MAVDILKLSPESFRTLFLRKEDKIILRTEAGKRIVIKRIIPEEWIPYR
Ga0070752_11225771	3300007345	Aqueous	MAAVDEILLAPESFRTIYLRREDRVIMRTEQGAKIIIKRIIPEEWEPYRIYEYEETLNNNKKEIYLF
Ga0070752_14015482	3300007345	Aqueous	MAVNDIILAPESFRTIYLRREDRVILRTERGEKIIIKRIIPDDWVAYRIYEYEETINNNKKEIFLF
Ga0099849_13391142	3300007539	Aqueous	MAVEEIILAPESFQTIYLRREDRVILRTESGRKIIVKRIIPDE*
Ga0099847_11467571	3300007540	Aqueous	MAVDNIVLAPESFRTIYLRREDRVIMRTERGEKIIVKRVIPEDWIPVRI
Ga0099847_12534531	3300007540	Aqueous	MNMAVDIIKLSPDSFRTIFLRKEDRIILRTEAGKRIIIKRIIPEEWIPYRIYDYERALNDNKKNIFL
Ga0102820_10217011	3300007554	Estuarine	MAAVDDIILAPESFRTIYLRREDRVILRTEQGRKIIVKRIIPEEWQPYRMYD
Ga0102821_11206781	3300007557	Estuarine	MAVDNIILAPESFRTIYLRKEDRVIMRTERGQKIIIKRIIPEDWVPYR
Ga0102821_11419771	3300007557	Estuarine	MAVDIIKLTPDSFLTIYLRREDRVILRTEQGRKIVIKRIIP
Ga0102902_12567292	3300007644	Estuarine	MAVDIVKLAPESFRTIYLRKEDRVILRTEQGRKIIIKRIIPEEWKPYRIYDYEIALNE
Ga0102910_10190603	3300007667	Estuarine	MAVDIIKLAPESFQTIYLRKEDRIILRTEQGRKIIIKRIIPSEWKPWKIYD
Ga0102910_10597711	3300007667	Estuarine	MAVDIIKLTPDSFLTIYLRREDRVILRTEQGRKIVIKRIIPEEWKAWRIYDNENAIN
Ga0102867_10602623	3300007716	Estuarine	MAAVDEILLAPESFRTIYLRREDRVIMRTEQGQKIIIR
Ga0099850_11447711	3300007960	Aqueous	MAVEEIILAPESFRTIYLRREDRVILRTETGRKIIIKRIIPEEWEPYRIYDY
Ga0102907_11592471	3300007962	Estuarine	MAAGDEILLAPESFRTIYLRREDRVIMRTEQGQKIIIRRIIPEEWKPY
Ga0114841_12631222	3300008259	Freshwater, Plankton	MATDIIKIAPNSFKTIFLRKEDRLILRTEAGRRIVLQRIVPEQWKAYRIYEY
Ga0102813_11189113	3300009003	Estuarine	MAVDIIKLTPDSFLTIYLRREDRVILRTEQGRKIVIKRIIPEEWKAWR
Ga0102813_11335383	3300009003	Estuarine	MAAVDDIILAPESFRTIYLRREDRVILRTEQGRKIIVKRIIPEEWQPYRMYDYEYDLNE
Ga0102905_11433622	3300009055	Estuarine	MAVDIIKLTPDSFLTIYLRREDRVILRTEQGRKIVIKRIIPEE
Ga0102812_104823981	3300009086	Estuarine	MAVDIIKLAPESFQTIYLRKEDRIILRTEQGRKIIIKR
Ga0114994_101498433	3300009420	Marine	MAVDNLILAPESFRTIYLRKEDRVIMRTERGQKIIIKRIIPEDWVPYRIFEYEE
Ga0115008_105384813	3300009436	Marine	MAVDIVKLAPESFQTIYLRKEDRIILRTEQGRKIIIKRIIPAEWREWKVYDQELAE
Ga0115570_101279491	3300009496	Pelagic Marine	MAVDNIILAPESFRTIYLRKEDRVIMRTERGQKIIIKRIVPEDWVPYRIFEYEEQ
Ga0115003_104285661	3300009512	Marine	MAAIDDIILAPESFQTIYLRREDRVIMRTERGAKIIIKRIIPEEWKPYRIYDYEIALNEKKKEIFL
Ga0115000_103541731	3300009705	Marine	MAVDNLILAPESFRTIYLRKEDRVIMRTERGQKIIIKRIIPEDWVP
Ga0098056_11517033	3300010150	Marine	MAVDNIILAPESFRTIYLRREDRVILRTERGQKIIVKRIIPDDWVPYRIF
Ga0129351_13840921	3300010300	Freshwater To Marine Saline Gradient	MAVDQVILAPESFRTIYLRREDRVILLTEQGRKIIIKR
Ga0181390_10700363	3300017719	Seawater	MAVDQVILAPESFRTIYLRKEDRVILRTERGRKIIIKRIIPDEWKEYRIY
Ga0181381_10742593	3300017726	Seawater	MAAVDEILLAPESFRTIYLRREDRVILRTEQGAKIIIKRIIPDEWEPYRIYEYEQALNDNKK
Ga0181392_11353203	3300017749	Seawater	MAVDIVKLAPESFRTIYLRKEDRIILRTEQGRKIIIKRIIPDEWKP
Ga0181422_12009252	3300017762	Seawater	MAVDIVKLAPESFRTIYLRKEDRIILRTEQGRKIIIKRIIPNEWKPWRVYDQELADNNNKKEIFLV
Ga0181422_12318811	3300017762	Seawater	MAVNDIILAPESFRTIYLRREDRVILRTERGQKIIVKRIIPDDWVPYR
Ga0181565_1000225125	3300017818	Salt Marsh	MAVDEIILAPESFQTIYLRREDRVILRTEQGRKII
Ga0181571_105975281	3300017957	Salt Marsh	MAAVDEILLAPESFRTIYLRREDRVIMRTEQGAKII
Ga0181582_109047702	3300017958	Salt Marsh	MAVEIVKLAPESFRTIYLRKEDRVILRTETGRKIIIKRIIPDEWKPWKIYDEE
Ga0181581_108384082	3300017962	Salt Marsh	MAVEQVKLTADSFRTIYLRREDRVILRTETGVKIIIRRIIPDEWKPWRVYENEEALNDNK
Ga0181590_105976301	3300017967	Salt Marsh	MAIDIVKIAPESFRTIYLRKEDRIILRTEAGRKIII
Ga0181569_101399483	3300017986	Salt Marsh	MAAVDDIVLAPESFRTIYLRREDRVILRTERGQKIIVKRIIPEDWV
Ga0181601_103523983	3300018041	Salt Marsh	MAVDIIKLAPESFQTIYLRKEDRIILRTEQGRKIIIKRIIPDEWKP
Ga0181606_107184891	3300018048	Salt Marsh	MADVIRLAPDSFRTIYLRREDRVILLTETGRRIFIKRI
Ga0181572_101656761	3300018049	Salt Marsh	MAVDDIILAPESFQTIYLRREDRVILRTERGEKIIIKRIIPEEWQPYRYFDYEFALNEKKKEI
Ga0181572_105496771	3300018049	Salt Marsh	MAVEDIILTPESFETIYLRREDRVILRTEKGAKIIIKRIIPDEWVAYRYYEYEEDINNNKKEIL
Ga0181561_105502222	3300018410	Salt Marsh	MAVDLVKLTPESFETIYLRKEDRVIIRTEQGRKIIIKR
Ga0181592_107187523	3300018421	Salt Marsh	MADVIRLAPDSFRTIYLRREDRVILLTETGRRIFIKRIIPDEWVPYRIYEQEEALNDN
Ga0181591_111492451	3300018424	Salt Marsh	MAVDQVILAPESFRTIYLRKEDRVILRTEQGRKIIIKRIIPDEWKE
Ga0194024_11609342	3300019765	Freshwater	MAINQFILSPESFRTIYLRKEDRVILRTEKGERIIIRRIIPD
Ga0181575_104997741	3300020055	Salt Marsh	MSVDDIILAPESFQTIYLRREDRVILRTERGEKIIIKRI
Ga0181573_102307391	3300020184	Salt Marsh	MADVIRLAPDSFRTIYLRREDRVILLTETGRRIFIKRIIPDEWVPYRIYEQEEALNDNKKEIFLFDRK
Ga0181573_104400341	3300020184	Salt Marsh	MAVDDIILAPESFQTIYLRREDRVILRTERGEKIIIKRIIPEEWQPYRYFDYEFALNEKKKEIFLI
Ga0181578_101417433	3300020189	Salt Marsh	MAVDDILLAPESFQTIYLRREDRVILRTERGEKIIIKRIIPEEWVPYRIYDYELALN
Ga0181604_102827361	3300020191	Salt Marsh	MAVDQVILAPESFRTIYLRREDRVILLTEQGRKIIIKRIIPEE
Ga0181570_103153491	3300020207	Salt Marsh	MAVDDILLAPESFQTIYLRREDRVILRTERGEKIIIKRII
Ga0206682_101072391	3300021185	Seawater	MAVDQVILAPESFRTIYLRKEDRVILRTERGRKIII
Ga0206682_101715163	3300021185	Seawater	MAVDIIKLAPESFQTIYLRKEDRVILRTEQGRKIIIKR
Ga0213867_10222581	3300021335	Seawater	MAVDQVILAPESFRTIYLRKEDRVILRTEQGRKIIIKRIIPDEWKEYRIYEYEKDRNEAKKDI
Ga0210307_10218613	3300021336	Estuarine	MAVDIIKLAPESFQTIYLRKEDRIILRTEQGRKIIIK
Ga0213859_102140541	3300021364	Seawater	MAVEQVKLTADSFRTIYLRREDRVILRTETGVKIIIRRIIPDEWRPWRVYENEEALNDN
Ga0213860_101513041	3300021368	Seawater	MAELIRLAPDSFRTIYLRREDRVILLTEYGRKIIIKRIIPEEWKPWRVYEDEEAKNDN
Ga0213865_102679021	3300021373	Seawater	MAVDQVILAPESFRTIYLRKEDRVILRTEQGRKIIIKRIIPDEWSAYRIFEYEKDRNE
Ga0213866_105686802	3300021425	Seawater	MAVDEIILAPESFQTIYLRREDRVILRTEQGRKIIIKRIVPEEWKPYRIYDYERDLNENKKE
Ga0212030_10292513	3300022053	Aqueous	MAVDNIILAPESFRTIYLRKEDRVIMRTERGDKIIIK
Ga0212021_10696881	3300022068	Aqueous	MALEQLILSPDSFQTIYLRKEDRVIIRTEKGEKIIIKRIIPD
Ga0196905_11207181	3300022198	Aqueous	MAVDEIILAPESFRTIYLRREDRVILRTENGRKIIVKRIIPEEWEPYR
Ga0222646_1018428	3300022822	Saline Water	MAVDIIKLSPESFETIYLRKEDRVILRTEQGRKIIIRRIIPEEWK
Ga0255771_10208859	3300022900	Salt Marsh	MAVEDIILTPESFETIYLRREDRVILRTEKGAKIIIK
Ga0255781_100006101	3300022934	Salt Marsh	MAVDEIILAPESFQTIYLRREDRVILRTEQGRKIII
Ga0255770_104915781	3300022937	Salt Marsh	MADVIRLAPDSFRTIYLRREDRVILLTETGRRIFIK
Ga0255754_100646001	3300022939	Salt Marsh	MAVDDILLAPESFQTIYLRREDRVILRTERGEKIIIK
Ga0228682_10240311	3300023698	Seawater	MAVDIVKLAPESFRTIYLRKEDRIILRTEQGRKIIIKRIIPSEWKP
(restricted) Ga0233438_100632031	3300024255	Seawater	MAVEIVKLAPESFRTIYLRKEDRVILRTETGRKIIIKRIIPDEWK
(restricted) Ga0233438_103951921	3300024255	Seawater	MAVDIIKLTPDSFLTIYLRREDRVILRTEQGRKIVIKRIIPAEWKAWRIYDNENAINENKREI
(restricted) Ga0233439_101000031	3300024261	Seawater	MAVDEILLAPESFQTIYLRREDRVILRTEQGRKIIIKRIIPEEWEPYRIYQYEQDLNDNKKEIYLFDKN
(restricted) Ga0233439_103754771	3300024261	Seawater	MAVDQVILAPESFRTIYLRREDRVILLTEQGRKIIIK
Ga0228610_10204884	3300024281	Seawater	MAVDIVKLAPESFQTIYLRKEDRIVLRTEQGRKIIIKRIIPNELKPWKIYD
Ga0228664_11000581	3300024294	Seawater	MAVDIVKLAPESFRTIYLRKEDRIILRTEQGRKIIIKRIIPDEWK
Ga0233398_10795453	3300024320	Seawater	MAVDIVKLAPESFRTIYLRKEDRIILRTEQGRKIIIKRII
Ga0228631_10405291	3300024329	Seawater	MAVDIIKLAPESFQTIYLRKEDRVILRTEQGRKIIIKRIIPD
Ga0228659_10342083	3300024332	Seawater	MAVDIVKLAPESFRTIYLRKEDRIILRTEQGRKIIIKRIIPSEWKPWRVYDQELADNNNK
Ga0244776_101674351	3300024348	Estuarine	MAVDIVKLAPESFRTIYLRKEDRIILRTEQGRKIIIKRIIPDEWKPWRVYDQELADNNNKKEIFL
Ga0244776_105994321	3300024348	Estuarine	MAVDQVILAPESFRTIYLRKEDRVILRTERGRKIIIKRIIPDEWKEYRIYDFERDRNESK
Ga0233393_11098652	3300024413	Seawater	MAVDIVKLAPESFRTIYLRKEDRIILRTEQGRKIIIKRIIPSEWKPWRVYDQELADNNNKKEIFLVD
Ga0209138_11274623	3300025617	Marine	MAVDNIILAPESFRTIYLRKEDRVIMRTERGQKIIIKRIIPEDWVPYRIFEYEEQIN
Ga0209659_12292902	3300025658	Marine	MAAVDEILLAPESFRTIYLRREDRVIMRTEQGQKIIIRRIIPEEWKPYRIYDYEQT
Ga0208162_11812722	3300025674	Aqueous	MAAVDEILLAPESFRTIYLRREDRVIMRTEQGAKIIIKRIIPEE
Ga0209771_12046422	3300025701	Marine	MAVDIVKLAPESFRTIYLRKEDRIILRTEQGRKIIIKRIIPNEWKPWRVYDQELADNNNKKEIFLVD
Ga0208427_11570831	3300025771	Aqueous	MAVDLIKLSPDSFRTIFLRKEDRTILRTEAGRRIVIKRIIPEEWQAYRVYEY
Ga0209534_104479521	3300025880	Pelagic Marine	MAVDNIILAPESFRTIYLRREDRVIMRTERGQKIIVKRIVPEDWVPYRVFDHETQLNDNKKEIF
Ga0209309_103399473	3300025881	Pelagic Marine	MAIEQFVLSPESFRTIYLRKEDRVILRTERGAKIIIRR
Ga0209630_103543462	3300025892	Pelagic Marine	MAVDNIVLAPESFRTIYLRREDRVILRTERGQKIIVKRIIPDDWVPYRIFEYETQINDNKKEI
Ga0247578_11130152	3300026458	Seawater	MAVDIVKLAPESFRTIYLRKEDRIILRTEQGRKIIIKRIIPSEWKPWRVYDQEL
Ga0247605_10218623	3300026503	Seawater	MAVDIVKLAPESFRTIYLRKEDRIILRTEQGRKIIIK
Ga0208921_10258111	3300027188	Estuarine	MAAVDDIILAPESFRTIYLRREDRVILRTEQGRKIIVKRIIPEEWQPYRM
Ga0208927_10657063	3300027220	Estuarine	MAAVDEILLAPESFRTIYLRREDRVIMRTELGQKIIIKRIIPEEWEPYRIF
Ga0208172_10501613	3300027231	Estuarine	MAAVDEILLAPESFRTIYLRREDRVIMRTELGQKIIIKRIIPEE
Ga0208678_10925692	3300027233	Estuarine	MAVDIIKLAPESFQTIYLRKEDRVILRTEQGRKIIIKRIIPDEWKEWKIFDQ
Ga0208897_11623072	3300027571	Estuarine	MAVNDIILAPESFRTIYLRREDRVILRTERGQKIIVKRIIPD
Ga0208304_102608682	3300027751	Estuarine	MAVDNIILAPESFRTIYLRKEDRVIMRTERGQKIIIKRIIPEDWVPYRIFEYEEQINDNKKE
Ga0209192_100177786	3300027752	Marine	MAVDDIILAPESFRTIYLRREDRVIMRTERGQKIIVKRIIPEDWLPYRIFEHETTLNDNKKEIFL
Ga0209502_103409623	3300027780	Marine	MAVDNLILAPESFRTIYLRKEDRVIMRTERGQKIIIKRIIPEDWVPYRIFEY
Ga0228674_12057742	3300028008	Seawater	MAVDIVKLAPESFQTIYLRKEDRIVLRTEQGRKIIIKRIIPNEWKPWKIYDDEEAKN
Ga0228634_10177061	3300028129	Seawater	MAVDIVKLAPESFRTIYLRKEDRIILRTEQGRKIIIKRIIPDEW
Ga0247601_10287262	3300028330	Seawater	MAVDIVKLAPESFRTIYLRKEDRIILRTEQGRKIIIKRIIPSEWKPWRVYDQELADNNNKKRNLFGG
Ga0302126_101305353	3300031622	Marine	MAVDSIILAPESFRTIYLRREDRVIMRTERGQKIIIK
Ga0307997_102932041	3300031706	Marine	MAVDIIKLAPESFQTIYLRKEDRIVLRTEQGRKIIIKRIIPSEWKEWKVYD
Ga0315320_108968981	3300031851	Seawater	MAVDEIILAPESFRTIYLRREDRVILRTELGRKIIVKRLIPEEWEPYRIYDF
Ga0315321_107100092	3300032088	Seawater	MAVDIIKLAPESFQTIYLRKEDRVILRTEQGRKIIIKRIIPDEWKEWKI
Ga0316204_106731971	3300032373	Microbial Mat	MAVDLIKLTPDSFLTIYLRREDRVILRTEQGRKIVIKRIIPEEWKAWRIYDNENAINENKREI
Ga0334982_0449980_1_171	3300033981	Freshwater	MAVDFIRLAPDSFRTIFLRKEDRVILRTEAGRRIVIKRIIPAEWVPYRVYEYEQALN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters