NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metatranscriptome Family F074337

Metatranscriptome Family F074337

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F074337
Family Type Metatranscriptome
Number of Sequences 119
Average Sequence Length 42 residues
Representative Sequence MRAVFLLAAFLAFASATDLTPDNFDELTSGKSVFIKFLAPW
Number of Associated Samples 103
Number of Associated Scaffolds 119

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 0.00 %
% of genes from short scaffolds (< 2000 bps) 0.00 %
Associated GOLD sequencing projects 98
AlphaFold2 3D model prediction Yes
3D model pTM-score0.31

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (100.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine
(53.782 % of family members)
Environment Ontology (ENVO) Unclassified
(84.034 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(74.790 % of family members)


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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: Yes Secondary Structure distribution: α-helix: 27.54%    β-sheet: 0.00%    Coil/Unstructured: 72.46%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.31
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 119 Family Scaffolds
PF00085Thioredoxin 97.48
PF00504Chloroa_b-bind 0.84
PF00112Peptidase_C1 0.84


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Phylogeny

NCBI Taxonomy

NameRankTaxonomyDistribution
UnclassifiedrootN/A100.00 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine53.78%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine28.57%
SeawaterEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Seawater14.29%
Polar MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Polar Marine1.68%
SeawaterEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Seawater0.84%
Coastal WaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Coastal Water0.84%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300009023Planktonic microbial communities from coastal waters of California, USA - Canon-29EnvironmentalOpen in IMG/M
3300009543Marine eukaryotic communities from Pacific Ocean to study complex ecological interactions - MBTS_20Mar14_M2_3um Metatranscriptome (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300009608Marine eukaryotic communities from Pacific Ocean to study complex ecological interactions - MBTS_2Apr14_M1_3um Metatranscriptome (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300009679Marine eukaryotic communities from Pacific Ocean to study complex ecological interactions - CN13ID_155_C17_100m_0.8um Metatranscriptome (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300010981Metatranscriptome of Marine eukaryotic phytoplankton communities from the Antarctic Ocean - ANT-7 (Eukaryote Community Metatranscriptome) (version 4)EnvironmentalOpen in IMG/M
3300010987Metatranscriptome of Marine eukaryotic phytoplankton communities from the Antarctic Ocean - ANT-7 (Eukaryote Community Metatranscriptome) (version 6)EnvironmentalOpen in IMG/M
3300011303Seawater microbial communities from Saanich Inlet, British Columbia, Canada - KN S21 DCM_B metaT (Metagenome Metatranscriptome) (version 2)EnvironmentalOpen in IMG/M
3300012418Metatranscriptomics of polar marine prokaryotic and eukaryotic communities from Palmer Station, Antarctica after 72hr light incubation - RNA12.A_72.20151113 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012419Metatranscriptomics of polar marine prokaryotic and eukaryotic communities from Palmer Station, Antarctica after 24hr light incubation - RNA10.B_24.20151111 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300018575Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_135 - TARA_N000002191 (ERX1782379-ERR1712162)EnvironmentalOpen in IMG/M
3300018617Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_018 - TARA_A100000604 (ERX1782236-ERR1711896)EnvironmentalOpen in IMG/M
3300018618Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_041 - TARA_N000000071 (ERX1782354-ERR1712005)EnvironmentalOpen in IMG/M
3300018625Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_052 - TARA_N000000598 (ERX1782204-ERR1712199)EnvironmentalOpen in IMG/M
3300018641Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_022 - TARA_A100000539 (ERX1782156-ERR1711909)EnvironmentalOpen in IMG/M
3300018645Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_151 - TARA_N000002739 (ERX1789677-ERR1719371)EnvironmentalOpen in IMG/M
3300018647Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_072 - TARA_N000000833 (ERX1782439-ERR1712057)EnvironmentalOpen in IMG/M
3300018655Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_064 - TARA_N000000522 (ERX1782387-ERR1711943)EnvironmentalOpen in IMG/M
3300018661Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_011 - TARA_X000001286 (ERX1782311-ERR1712063)EnvironmentalOpen in IMG/M
3300018666Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_025 - TARA_A100000398 (ERX1782307-ERR1712184)EnvironmentalOpen in IMG/M
3300018670Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_039 - TARA_N000000051 (ERX1782175-ERR1712065)EnvironmentalOpen in IMG/M
3300018674Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_026 - TARA_E400007200 (ERX1782187-ERR1712006)EnvironmentalOpen in IMG/M
3300018681Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_041 - TARA_N000000072 (ERX1782177-ERR1712164)EnvironmentalOpen in IMG/M
3300018692Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_082 - TARA_N000001382 (ERX1782155-ERR1712153)EnvironmentalOpen in IMG/M
3300018725Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_142 - TARA_N000003104 (ERX1782256-ERR1712230)EnvironmentalOpen in IMG/M
3300018735Metatranscriptome of marine prokaryotic communities collected during Tara Oceans survey from station TARA_151 - TARA_B100001565 (ERX1399747-ERR1328127)EnvironmentalOpen in IMG/M
3300018742Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_022 - TARA_A100000534 (ERX1789653-ERR1719224)EnvironmentalOpen in IMG/M
3300018749Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_124 - TARA_N000002036 (ERX1789662-ERR1719448)EnvironmentalOpen in IMG/M
3300018763Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_040 - TARA_N000000064 (ERX1782288-ERR1711868)EnvironmentalOpen in IMG/M
3300018766Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_036 - TARA_N000000317 (ERX1789428-ERR1719465)EnvironmentalOpen in IMG/M
3300018768Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_138 - TARA_N000003011 (ERX1789448-ERR1719377)EnvironmentalOpen in IMG/M
3300018781Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_123 - TARA_N000001992 (ERX1789655-ERR1719256)EnvironmentalOpen in IMG/M
3300018787Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_011 - TARA_X000001288 (ERX1789595-ERR1719164)EnvironmentalOpen in IMG/M
3300018806Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_068 - TARA_N000000722 (ERX1789621-ERR1719484)EnvironmentalOpen in IMG/M
3300018812Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_040 - TARA_N000000065 (ERX1789716-ERR1719392)EnvironmentalOpen in IMG/M
3300018814Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_038 - TARA_N000000047 (ERX1789515-ERR1719274)EnvironmentalOpen in IMG/M
3300018817Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_038 - TARA_N000000030 (ERX1789390-ERR1719248)EnvironmentalOpen in IMG/M
3300018825Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_081 - TARA_N000001436 (ERX1809755-ERR1740127)EnvironmentalOpen in IMG/M
3300018830Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_039 - TARA_N000000006 (ERX1789678-ERR1719267)EnvironmentalOpen in IMG/M
3300018831Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_082 - TARA_N000001386 (ERX1789378-ERR1719149)EnvironmentalOpen in IMG/M
3300018836Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_066 - TARA_N000000807 (ERX1789715-ERR1719504)EnvironmentalOpen in IMG/M
3300018860Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_039 - TARA_N000000007 (ERX1782399-ERR1711861)EnvironmentalOpen in IMG/M
3300018861Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_152 - TARA_N000002482 (ERX1789410-ERR1719398)EnvironmentalOpen in IMG/M
3300018870Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_152 - TARA_N000002791 (ERX1789585-ERR1719426)EnvironmentalOpen in IMG/M
3300018879Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_152 - TARA_N000002480 (ERX1789365-ERR1719178)EnvironmentalOpen in IMG/M
3300018880Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_110 - TARA_N000001752 (ERX1782455-ERR1712124)EnvironmentalOpen in IMG/M
3300018888Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_102 - TARA_N000001648 (ERX1789571-ERR1719332)EnvironmentalOpen in IMG/M
3300018967Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_036 - TARA_N000000316 (ERX1789557-ERR1719488)EnvironmentalOpen in IMG/M
3300018982Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_082 - TARA_N000001384 (ERX1782271-ERR1711935)EnvironmentalOpen in IMG/M
3300018989Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_152 - TARA_N000002803 (ERX1782326-ERR1711934)EnvironmentalOpen in IMG/M
3300019001Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_009 - TARA_X000001043 (ERX1782383-ERR1712007)EnvironmentalOpen in IMG/M
3300019003Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_153 - TARA_N000002825 (ERX1789479-ERR1719182)EnvironmentalOpen in IMG/M
3300019009Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_067 - TARA_N000000756 (ERX1782233-ERR1711966)EnvironmentalOpen in IMG/M
3300019031Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_142 - TARA_N000003104 (ERX1782386-ERR1711939)EnvironmentalOpen in IMG/M
3300019036Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_082 - TARA_N000001382 (ERX1782404-ERR1712086)EnvironmentalOpen in IMG/M
3300019045Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_110 - TARA_N000001752 (ERX1782348-ERR1712224)EnvironmentalOpen in IMG/M
3300019129Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_131 - TARA_N000002352 (ERX1782251-ERR1711975)EnvironmentalOpen in IMG/M
3300019150Eukaryotic communities of water from different depths collected during the Tara Oceans expedition - TARA_N000000616 (ERX1782105-ERR1711908)EnvironmentalOpen in IMG/M
3300021350Metatranscriptome of ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 40m 12015 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300021868Metatranscriptome of Marine eukaryotic phytoplankton communities from the Antarctic Ocean - ANT-3 (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300021873Metatranscriptome of Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Stratiphyt 2011 S2 C1 B8 (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300021895Metatranscriptome of Marine eukaryotic phytoplankton communities from the Antarctic Ocean - ANT-13 (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300021897Metatranscriptome of marine eukaryotic phytoplankton communities from Norwegian Sea - 20m ARK-7M ARK-7-2 (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300021902Metatranscriptome of marine eukaryotic phytoplankton communities from the Arctic Ocean - ARK-1S (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300021903Metatranscriptome of marine eukaryotic phytoplankton communities from Norwegian Sea - 20m ARK-7M ARK-7-3 (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300021905Metatranscriptome of marine eukaryotic phytoplankton communities from the Arctic Ocean - ARK-2S (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300021906Metatranscriptome of marine eukaryotic phytoplankton communities from the Arctic Ocean - ARK-2M (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300021908Metatranscriptome of Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Stratiphyt 2011 S11 C1 B13 (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300021925Metatranscriptome of marine eukaryotic phytoplankton communities from the Arctic Ocean - ARK-51M (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300021933Marine eukaryotic phytoplankton communities from the Norwegian Sea - 20m ARK-7M Euk - ARK-7-1 (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300021935Metatranscriptome of Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Stratiphyt 2011 S17 C1 B21 (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300021936Metatranscriptome of marine eukaryotic phytoplankton communities from the Arctic Ocean - ARK-15M (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300021942Metatranscriptome of marine eukaryotic phytoplankton communities from the Arctic Ocean - ARK-61M (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300028575Metatranscriptome of Marine eukaryotic phytoplankton communities from the Antarctic Ocean - ANT-7 (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300030720Metatranscriptome of marine microbial communities from Western Arctic Ocean, Canada - CB4_952_Surface (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300030750Seawater microbial communities from Saanich Inlet, British Columbia, Canada - DeepDOM_E6_T_5 metaT (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300030788Seawater microbial communities from Saanich Inlet, British Columbia, Canada - DeepDOM_E6_R_0.2 metaT (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300030856Seawater microbial communities from Saanich Inlet, British Columbia, Canada - DeepDOM_S23_0.2 metaT (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300030919Seawater microbial communities from Saanich Inlet, British Columbia, Canada - DeepDOM_E6_V_0.2 metaT (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300030948Seawater microbial communities from Saanich Inlet, British Columbia, Canada - DeepDOM_E7_V_0.2 metaT (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300030952Seawater microbial communities from Saanich Inlet, British Columbia, Canada - DeepDOM_E4_Q_0.2 metaT (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300030958Seawater microbial communities from Saanich Inlet, British Columbia, Canada - DeepDOM_E6_X_5 metaT (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300031062Seawater microbial communities from Saanich Inlet, British Columbia, Canada - DeepDOM_S21_0.2 metaT (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300031126Seawater microbial communities from Saanich Inlet, British Columbia, Canada - DeepDOM_E6_Q_0.2 metaT (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300031522Metatranscriptome of marine eukaryotic phytoplankton communities from South Atlantic Ocean ? PS103-3.R2 (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300031709Metatranscriptome of marine eukaryotic phytoplankton communities from South Atlantic Ocean ? PS103-2.R2 (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300031710Metatranscriptome of marine eukaryotic phytoplankton communities from South Atlantic Ocean ? PS103-2.R3 (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300032470Metatranscriptome of seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway - Red2_24May_surf (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300032481Metatranscriptome of seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway - Amb1_26May_surf (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300032492Metatranscriptome of seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway - Red3_28May_surf (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300032520Metatranscriptome of seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway - Amb1_24May_surf (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300032540Metatranscriptome of seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway - Red3_26May_deep (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300032650Metatranscriptome of seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway - Red2_22May_deep (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300032651Metatranscriptome of seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway - Red4_26May_surf (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300032708Metatranscriptome of seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway - Red2_22May_surf (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300032714Metatranscriptome of seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway - Red4_28May_surf (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300032726Metatranscriptome of seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway - Plim7_28May_surf (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300032727Metatranscriptome of seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway - Plim5_22May_deep (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300032730Metatranscriptome of seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway - Plim7_22May_deep (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300032743Metatranscriptome of seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway - Shad10_24May_surf (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300032744Metatranscriptome of seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway - Amb9_24May_surf (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300032746Metatranscriptome of seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway - Plim7_28May_deep (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300032747Metatranscriptome of seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway - Shad11_28May_surf (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300032750Metatranscriptome of seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway - Shad10_26May_surf (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
Ga0103928_1011310113300009023Coastal WaterAVFLLAAFLAFASATDLTPDNFDELTSGKSVFIKFLAPW*
Ga0115099_1043403913300009543MarineVFLLAAFLALASAHELTPDNYDELTSGKTVFIKFQAPW*
Ga0115099_1070483613300009543MarineTMSKTLFFLAAIVAVASTTELTPDNYDELTSGKSVFIKFLAPW*
Ga0115100_1048972423300009608MarineRAVFLLAAFLALASAHELTPDNYDELTSGKTVFIKFQAPW*
Ga0115100_1066871523300009608MarineHTMSKTLFFLAAIVAVASTTELTPDNYDELTSGKSVFIKFLAPW*
Ga0115105_1058685223300009679MarineLLLSFLAAVCALELTPDNFDEKTSGKSVFIKFLAPW*
Ga0138316_1092462923300010981MarineMRATLLLAFVAAACAMELTPDNYDEMTSGKSVFIKFLAPW*
Ga0138324_1014687613300010987MarineETMMRAVLLLALVASVASIELNPDNFDEVTSGKSVFIKFLAPW*
Ga0138324_1056184213300010987MarineMMRATLLLAFVAAACAMELTPDNYDEMTSGKSVFIKFLAPW*
Ga0138405_111833723300011303MarineARVAILALAMLALASAVELTPDTYDEMTSGKSVFIKFLAPW*
Ga0138261_144124123300012418Polar MarineMRAALLLAFVATAASMSLDNTNYDEVTSGKTVFIKFQAPW*
Ga0138260_1077151523300012419Polar MarineSAICAILALAATVQAIELTPDNYDEVTAGKTVFIKFQAPW*
Ga0193474_100676213300018575MarineHGESKMRAVFLLAAFLAFASATDLTPDNFDELTSGKSVFIKFLAPW
Ga0193133_100494913300018617MarineMGELCETMMRAVLLLALVASVASIELNPDNFDEVTSGKSVFIKFLAPW
Ga0193204_100404613300018618MarineEYMGEPCETMMRAVLLLALVASVASIELNPDNFDEVTSGKSVFIKFLAPW
Ga0192842_100823513300018625MarineTWGELCETMMRAVLLLALVASVASIELNPDNFDEVTSGKSVFIKFLAPW
Ga0193142_102814923300018641MarineFLLAAFLAFASATDLTPDNFDELTSGKSVFIKFLAPW
Ga0193071_100995123300018645MarineAVLLLAIVASVASIELNPDNFDEVTSGKSVFIKFLAPW
Ga0192913_100824523300018647MarineMMRAVLLLALVASVASIELNPDNFDEVTSGKSVFIKFLAPW
Ga0192846_100807823300018655MarineTWGEPCETMMRAVLLLAIVASVASIELNPDNFDEVTSGKSVFIKFLAPW
Ga0193122_102370713300018661MarineTWGLSKMRAVFLLAAFLAFASATDLTPDNFDELTSGKSVFIKFLAPW
Ga0193159_102016513300018666MarineGESKMRAVFLIAAFLAVASATDLTPDNFDELTSGKSVFIKFLAPW
Ga0193159_103444723300018666MarineGESKMRAVFLLAAFLAFASATDLTPDNFDELTSGKSVFIKFLAPW
Ga0192819_101413723300018670MarineTWGELCETMMRAVLLLAIVASVASIELNPDNFDEVTSGKSVFIKFLAPW
Ga0193166_100334323300018674MarineHGGLSKMRAVFLLAAFLAFASATDLTPDNFDELTSGKSVFIKFLAPW
Ga0193166_100370413300018674MarineHGGTNMRAFILLACVAVAASVELTASNFDEQTSGKSVFIKFLAPW
Ga0193206_101250423300018681MarineMGTSSIDMKLAILALALVAAANAIELNPDNFDEVTSGKSVFIKFLAPW
Ga0192944_101449633300018692MarineMGSLVHTMSKTLFFLAAIVAVASTTELTPDNYDELTSGKSVFIKFLAPW
Ga0192944_101885723300018692MarineMGIKKMRAVFLLAAFLALASAHELTPDNYDELTSGKTVFIKFQAPW
Ga0193517_103192213300018725MarineTWGTSSMMRATLLLAFVAAACAMELTPDNYDEMTSGKSVFIKFLAPW
Ga0193544_100897413300018735MarineGEPCETMMRAVLLLAIVASVASIELNPDNFDEVTSGKSVFIKFLAPW
Ga0193138_101758623300018742MarineRAVFLLAAFLAFASATDLTPDNFDELTSGKSVFIKFLAPW
Ga0193392_101763223300018749MarineTMMRAVLLLAIVASVASIELNPDNFDEVTSGKSVFIKFLAPW
Ga0192827_102166523300018763MarineMRAVFLLAAFLAFASATDLTPDNFDELTSGKSVFIKFLAPW
Ga0192827_103236523300018763MarineTWGQSKMRAVFLLAAFLAFASATDLTPDNFDELTSGKSVFIKFLAPW
Ga0193181_101656613300018766MarineETMMRAVLLLAIVASVASIELNPDNFDEVTSGKSVFIKFLAPW
Ga0193503_103711313300018768MarineLLLALVASVASIELNPDNFDEVTSGKSVFIKFLAPW
Ga0193380_102354513300018781MarineMRAVLLLAIVASVASIELNPDNFDEVTSGKSVFIKFLAPW
Ga0193124_102194713300018787MarineLLAAFLAFASATDLTPDNFDELTSGKSVFIKFLAPW
Ga0192898_103447233300018806MarineFLLLALVVAASAVELTPDNFDEMTSGKSVFIKFLAPW
Ga0192829_105941523300018812MarineVFLLAAFLAFASATDLTPDNFDELTSGKSVFIKFLAPW
Ga0193075_103690823300018814MarineLARVAILALASLALASAVELTPDTYDSMTSGKSVFIKFLAPW
Ga0193075_107129923300018814MarineETMMRAVLLLALVASVASIELNPDNFDEVTSGKSVFIKFLAPW
Ga0193187_103032523300018817MarineLELCETMMRAVLLLALVASVASIELNPDNFDEVTSGKSVFIKFLAPW
Ga0193048_101852913300018825MarineKIALLLAMVAVASSVELSPDNYDELTSGKSVFIKFLAPW
Ga0193191_102957313300018830MarineKIALLLAMVAVASSVELNPDNFDEMTSGKSVFIKFLAPW
Ga0193191_103131613300018830MarineAVFLLAAFLAFASATDLTPDNFDELTSGKSVFIKFLAPW
Ga0192949_104087423300018831MarineSKTLFFLAAIVAVASTTELTPDNYDELTSGKSVFIKFLAPW
Ga0192949_104737813300018831MarineLLAAFLALASAHELTPDNYDELTSGKTVFIKFQAPW
Ga0192870_103653323300018836MarineTLLLAFVAAACAMELTPDNYDEMTSGKSVFIKFLAPW
Ga0193192_100897013300018860MarineGETRPRVALEPCETMMRAVLLLAIVASVASIELNPDNFDEVTSGKSVFIKFLAPW
Ga0193072_104299723300018861MarineRATLLLAFVAAACATELTPDNYDEMTSGKSVFIKFLAPW
Ga0193533_112834523300018870MarineRAALLLAFVAAACATELTPDNYDEMTSGKSVFIKFLAPW
Ga0193027_104123313300018879MarineATLLLAFVAAACATELTPDNYDEMTSGKSVFIKFLAPW
Ga0193337_100712523300018880MarineMGALELCETMMRAVLLLALVASVASIELNPDNFDEVTSGKSVFIKFLAPW
Ga0193304_103430223300018888MarineLAALALVACVSAVELTPDNYDSMTSGKSVFIKFLAPW
Ga0193178_1001228213300018967MarineRAVLLLAIVASVASIELNPDNFDEVTSGKSVFIKFLAPW
Ga0193178_1001284323300018967MarineLALLALALVAVASAVELNPDNYDEMTSGKSVFIKFLAPW
Ga0192947_1010565323300018982MarineHGEQSKMRAVFLLAAFLALASAHELTPDNYDELTSGKTVFIKFQAPW
Ga0193030_1009475523300018989MarineGDFSTLSKMRAVFLLAAFLAFASATDLTPDNFDELTSGKSVFIKFLAPW
Ga0193034_1005037523300019001MarineMGQSKMRAVFLLAAFLAFASATELTPDNFDELTSGKSVFIKFLAPW
Ga0193033_1019551423300019003MarineLLLACVAAFASAVELTPDNFDEMTSGKSVFIKFLAPW
Ga0192880_1004445023300019009MarineGGSSMMRAVLLLACVAAAAGMELNKDNYDSTVAGKQVFIKFLAPW
Ga0192880_1005578433300019009MarineMGTQSKSKMRAVFLLAAFLALASAHELTPDNYDELTSGKTVFIKFQAPW
Ga0193516_1014086223300019031MarineTWGAIIMMKIALLLAMVAVASSVELNPDNFDEMTSGKSVFIKFLAPW
Ga0192945_1006926533300019036MarineHMGSLVHTMSKTLFFLAAIVAVASTTELTPDNYDELTSGKSVFIKFLAPW
Ga0192945_1008055313300019036MarineLVHTMSKTLFFLAAIVAVASTTELTPDNYDELTSGKSVFIKFLAPW
Ga0193336_1007497723300019045MarineMGALELCETMMRAVLLLAIVASVASIELNPDNFDEVTSGKSVFIKFLAPW
Ga0193436_102279813300019129MarineMGTRVITMKLALLALALVAVASAVELNPDNYDEMTSGKSVFIKFLAPW
Ga0193436_102603923300019129MarineMGNAEYMGLSKMRAVFLLAAFLAFASATDLTPDNFDELTSGKSVFIKFLAPW
Ga0194244_1002710323300019150MarineRALLVLLAVASVSAIELSPDNYDEMTAGKSVFIKFLAPW
Ga0206692_161568113300021350SeawaterTMSKTLFFLAAIVAVASTTELTPDNYDELTSGKSVFIKFLAPW
Ga0063111_10949413300021868MarineTMMRAVLLLALVASVASIELNPDNFDEVTSGKSVFIKFLAPW
Ga0063128_10405613300021873MarinePCETMMRAVLLLAIVASVASIELNPDNFDEVTSGKSVFIKFLAPW
Ga0063120_104433213300021895MarineLLLALVVAASAVELTPDNFDEMTSGKSVFIKFLAPW
Ga0063873_100091413300021897MarineVFLLAAFLALASAHELTPDNYDELTSGKTVFIKFQAPW
Ga0063086_100137113300021902MarineMRAVFLLAAFLALASAHELTPDNYDELTSGKTVFIKFQAPW
Ga0063874_108006413300021903MarineLALLALVAAVSATELTPDNFDSLSSGKSVFIKFLAPW
Ga0063088_100308613300021905MarineAVFLLAAFLALASAHELTPDNYDELTSGKTVFIKFQAPW
Ga0063087_100719113300021906MarineRAVFLLAAFLALASAHELTPDNYDELTSGKTVFIKFQAPW
Ga0063135_101136213300021908MarineMSKTLFFLAAIVAVASTTELTPDNYDELTSGKSVFIKFLAPW
Ga0063096_102896413300021925MarineMMRSLALLALVAAVSATELTPDNFDSLSSGKSVFIKFLAPW
Ga0063756_106343513300021933MarineRSLALLALVAAVSATELTPDNFDSLSSGKSVFIKFLAPW
Ga0063138_102177713300021935MarinePRSSMMRAVLLLACVAAAAGMELNKDNYDSTVAGKQVFIKFLAPW
Ga0063138_103759513300021935MarineFAIAMLAFVALASATELTPDNYDTLTSGKSVFIKFLAPW
Ga0063092_100895313300021936MarineKMRAVFLLAAFLALASAHELTPDNYGELTSGKTVFIKFQAPW
Ga0063098_100284013300021942MarineVFLLAAFLALASAHELTPDNYGELTSGKTVFIKFQAPW
Ga0063098_105208013300021942MarineSLALLALVAAVSATELTPDNFDSLSSGKSVFIKFLAPW
Ga0304731_1042873723300028575MarineMRATLLLAFVAAACAMELTPDNYDEMTSGKSVFIKFLAPW
Ga0308139_101969223300030720MarineMRAFVLFAVLASVAAHDLTPDNYDELTNGKSVFIKFLAPW
Ga0073967_1001897923300030750MarineSKMRAVFLLAAFLAFASATDLTPDNFDELTSGKSVFIKFLAPW
Ga0073964_1000721313300030788MarineCETMMRAVLLLAIVASVASIELNPDNFDEVTSGKSVFIKFLAPW
Ga0073990_1000973223300030856MarineSSRALEPCETMMRAVLLLAIVASVASIELNPDNFDEVTSGKSVFIKFLAPW
Ga0073970_1142883223300030919MarineLLLAIVASVASIELNPDNFDEVTSGKSVFIKFLAPW
Ga0073977_100934123300030948MarineLLSLLAVSNAVELTPDNYDEMVAGKTVFIKFLAPW
Ga0073938_1230364623300030952MarineLEPCETMMRAVLLLAIVASVASIELNPDNFDEVTSGKSVFIKFLAPW
Ga0073971_1002661513300030958MarineMMKIALLLAMVAVASSVELNPDNFDEMTSGKSVFIKFLAPW
Ga0073989_1002552413300031062MarineVALALVAVASAVELNPDNYDEMTSGKSVFIKFLAPW
Ga0073962_1187854923300031126MarineESKMRAVFLLAAFLAFASATDLTPDNFDELTSGKSVFIKFLAPW
Ga0307388_1037696513300031522MarineKMRAVFLLAAFLALASAHELTPDNYDELTSGKTVFIKFQAPW
Ga0307385_1014270013300031709MarineRVLLALTALAAVTSAHELTPDNYDDLTAGKSVFIKFQAPW
Ga0307386_1022964013300031710MarineSKMRAVFLLAAFLALASAHELTPDNYDELTSGKTVFIKFQAPW
Ga0314670_1022853213300032470SeawaterMRSLALLALVAAVSATELTPDNFDSLSSGKSVFIKFLAPW
Ga0314668_1022546313300032481SeawaterEGRSNIKKMRAVFLLAAFLALASAHELTPDNYDELTSGKTVFIKFQAPW
Ga0314679_1009341213300032492SeawaterIGEGRSNIKKMRAVFLLAAFLALASAHELTPDNYDELTSGKTVFIKFQAPW
Ga0314667_1026028113300032520SeawaterRTVARQQSKMRAVFLLAAFLALASAHELTPDNYDELTSGKTVFIKFQAPW
Ga0314682_1024176313300032540SeawaterVARQQSKMRAVFLLAAFLALASAHELTPDNYDELTSGKTVFIKFQAPW
Ga0314673_1020471433300032650SeawaterGRSNIKKMRAVFLLAAFLALASAHELTPDNYDELTSGKTVFIKFQAPW
Ga0314685_1026423513300032651SeawaterLTMMRSLALLALVAAVSATELTPDNFDSLSSGKSVFIKFLAPW
Ga0314669_1023565923300032708SeawaterGEGRSNIKKMRAVFLLAAFLALASAHELTPDNYDELTSGKTVFIKFQAPW
Ga0314686_1023557213300032714SeawaterTMMRSLALLALVAAVSATELTPDNFDSLSSGKSVFIKFLAPW
Ga0314698_1012227613300032726SeawaterMCLAAVFLLAAFLALASAHELTPDNYDELTSGKTVFIKFQAPW
Ga0314693_1003799113300032727SeawaterNIKKMRAVFLLAAFLALASAHELTPDNYDELTSGKTVFIKFQAPW
Ga0314699_1018099913300032730SeawaterRSLALLALVAAVSATELTPDNFDSLSSGTSVFIKFLAPW
Ga0314707_1021669913300032743SeawaterKIGEGRSNIKKMRAVFLLAAFLALASAHELTPDNYDELTSGKTVFIKFQAPW
Ga0314705_1007562523300032744SeawaterVPSKMRAVFLLAAFLALASAHELTPDNYDELTSGKTVFIKFQAPW
Ga0314701_1019584113300032746SeawaterKKMRAIFLLAAFLALASAHELTPDNYDELTSGKTVFIKFQAPW
Ga0314712_1020308423300032747SeawaterKKMRAVFLLAAFLALASAHELTPDNYDELTSGKTVFIKFQAPW
Ga0314708_1024266613300032750SeawaterLLALVAAVSATELTPDNFDSLSSGKSVFIKFLAPW

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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