Basic Information | |
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Family ID | F074315 |
Family Type | Metagenome |
Number of Sequences | 119 |
Average Sequence Length | 48 residues |
Representative Sequence | MSTDFTEQWSNMQKMFLESSEMSASFRESARRFWENQGKLLDNMQALA |
Number of Associated Samples | 81 |
Number of Associated Scaffolds | 119 |
Quality Assessment | |
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Transcriptomic Evidence | No |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 100.00 % |
% of genes near scaffold ends (potentially truncated) | 99.16 % |
% of genes from short scaffolds (< 2000 bps) | 84.87 % |
Associated GOLD sequencing projects | 74 |
AlphaFold2 3D model prediction | No |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (57.143 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil (63.025 % of family members) |
Environment Ontology (ENVO) | Unclassified (63.866 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (88.235 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64. |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 89.58% β-sheet: 0.00% Coil/Unstructured: 10.42% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Tropical Forest Soil Soil Soil Tropical Forest Soil Populus Rhizosphere |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
JGI12540J11931_1019721 | 3300000683 | Tropical Forest Soil | MEATDFTEQWSNMQKMFLASSEMSASFRESARRFWENQGKLLDDMX |
JGI12494J11907_1008632 | 3300000686 | Tropical Forest Soil | METTDFTEQWSNMQKMFLASSEMSASFRESARRFWENQGKLLDDMQALANGWFDRRRT |
JGI12582J11924_1028262 | 3300000690 | Tropical Forest Soil | MSTDFTEQWSNMQKMFLASSEMSASFRESARRFWENQGKLLDDMQ |
JGI12416J11903_1011701 | 3300000703 | Tropical Forest Soil | METTDFTEQWSNMQKMFLASSEMSASFRESARRFWENQGKLLDDM |
JGI12371J11900_10087792 | 3300000729 | Tropical Forest Soil | MSTDFTEQWKKMQEMFLASSEMSASFRESARRFWENQGKLLDNMQALANGW |
JGI12535J11911_10050524 | 3300000734 | Tropical Forest Soil | MEATDFTEQWSNMQKMFLASSEMSASFRESARRFWENQGKLLDDMQALA |
JGI12535J11911_10068242 | 3300000734 | Tropical Forest Soil | MSTDFTEQWKKMQEMFLASSEMSASFRESARRFWENQGKLLDN |
JGI12407J12866_1028671 | 3300000935 | Tropical Forest Soil | MEITDFTEQWSNMQKMFLESSEMSASFRESARRFWENQGKLLDNMQA |
JGI12407J12866_1078731 | 3300000935 | Tropical Forest Soil | METTDFTEQWSNMQKMFLASSEMSASFRESARRFWENQGKLLDDMQT |
Ga0114129_124598801 | 3300009147 | Populus Rhizosphere | MKNADFTEQWTAMQKMFLPTSAISAPLRENAQRFWENQDKVLDNMQALANA |
Ga0075423_121444551 | 3300009162 | Populus Rhizosphere | MKNTDFTEQWTTMQKMFLPTSAISAPLRENAQRFWENQEKVLDGMQALAN |
Ga0126370_120504731 | 3300010358 | Tropical Forest Soil | MNPTDFAEQWSSMQKMFLPTSEVSATFRDNARRFWENQDKLLDSMQALA |
Ga0182041_102069731 | 3300016294 | Soil | MSMDFTEQWNNMQKMFLPSSEISATFRENARQFWENQGKVLDN |
Ga0182041_103034071 | 3300016294 | Soil | MASTDFTEQWSNMQKMFLPSSEISATFRENARQFWENQGKV |
Ga0182041_105224032 | 3300016294 | Soil | MSTDFTEQWNNMQKMFLASSEMSASFRESARRFWENQGKLLDDMQAFANDWFDRRR |
Ga0182033_102508021 | 3300016319 | Soil | MSTDFTEQWSNMQKMFLASSEMSASFRESARRFWENQGKLLDDMQALANGWFDR |
Ga0182035_101901264 | 3300016341 | Soil | MSTDFTEQWSNMQKMFLESSEMSASFRESARRFWEN |
Ga0182035_104122881 | 3300016341 | Soil | MSTDFTEQWSNMQKMFLQSSEMSASFRENARQFWENQGKVLDNMQALAN |
Ga0182035_116601741 | 3300016341 | Soil | MSTDFSEQWTSMQKMFLPSSEISATFKENARQFWENQGKVLDNMQA |
Ga0182032_105200211 | 3300016357 | Soil | MSTDFTEQWSNMQKMFLESSEMSASFRESARRFWENQGKLLDNMQALANGWFDRRRTG |
Ga0182032_106220921 | 3300016357 | Soil | MSMDFTEQWNNMQKMFLPSSEISATFRENARQFWENQGKVLDNMQA |
Ga0182034_100267316 | 3300016371 | Soil | MSMDFTEQWNNMQKMFLPSSEISATFRENARQFWENQGKVLDNMQALANGWFDRRRTGT |
Ga0182034_100953043 | 3300016371 | Soil | MASTDFTEQWSNMQKMFLPSSEISATFRENARQFWENQ |
Ga0182034_104452131 | 3300016371 | Soil | MSTDFTEQWSNMQKMFLASSEMSASFRESARRFWENQGKLLDDMQALAN |
Ga0182034_116290282 | 3300016371 | Soil | MSTDFTEQWSNMQKMFLESSEMSASFRESARRFWENQGKLLD |
Ga0182040_108171042 | 3300016387 | Soil | MSMDFTEQWNNMQKMFLPSSEISATFRENARQFWENQGKVLDNMQAL |
Ga0182037_108807971 | 3300016404 | Soil | MSTDFTEQWSDMQKMFLASSEMSASFRESARRFWENQGKLLDNMQALANG |
Ga0182037_121302761 | 3300016404 | Soil | MSTDFTEQWSNMQKMFLESSEMSASFRESARRFWENQ |
Ga0182039_100362314 | 3300016422 | Soil | MSTDFTEQWSNMQKMFLQSSEMSASFRENARQFWENQGKVLDNMQ |
Ga0182039_103938951 | 3300016422 | Soil | MSTDFTEQWNNMQKMFLASSEMSASFKESARRFWENQGKLLDDMQALANGWFDRRRTGAH |
Ga0182039_109277551 | 3300016422 | Soil | MSTDFTEQWKKLQETFLASSEMSASFRERARRFWENQGKLLDDMQALANGWFDRRR |
Ga0182038_111406401 | 3300016445 | Soil | MSTDFTEQWNNMQKMFLASSEMSASFRESARRFWENQGKLLDDMQALANGWFDRRRTGA |
Ga0207725_1007025 | 3300026692 | Tropical Forest Soil | MEATDFTEQWSNMQKMFLASSEMSASFRESARRFWENQGKLLDDMQALANG |
Ga0207725_1020131 | 3300026692 | Tropical Forest Soil | METTDFTEQWSNMQKMFLASSEMSASFRESARRFWENQGKLLDDMQALANG |
Ga0207742_1019221 | 3300026800 | Tropical Forest Soil | METTDFTEQWSNMQKMFLASSEMSASFRESARRFWENQGKLL |
Ga0207737_1034964 | 3300026804 | Tropical Forest Soil | METTDFTEQWSNMQKMFLASSEMSASFRENARQFWENQGKVLDNM |
Ga0207820_1104171 | 3300026809 | Tropical Forest Soil | MSTDFTEQWSNMQKMFLASSEMSASFRESARRFWE |
Ga0207820_1111103 | 3300026809 | Tropical Forest Soil | METTDFTEQWSNMQKMFLASSEMSASFRESARRFWE |
Ga0207801_1036813 | 3300026810 | Tropical Forest Soil | METTDFTEQWSNMQKMFLASSEMSASFRENARQFWE |
Ga0207775_1045822 | 3300026817 | Tropical Forest Soil | MASTDFTEQWSNMQKMFLPSSEISATFTENARRFWENQGKVLDNMQALANGWF |
Ga0207765_1059932 | 3300026819 | Tropical Forest Soil | METTDFTEQWSNMQKMFLASSEMSASFRENARQFWENQGKVLDNMQALA |
Ga0207728_1021375 | 3300026833 | Tropical Forest Soil | MASTDFTEQWSSMQKMFLPSSEISATFTENARRFWENQGKVLDNMQALANGWFDRRRT |
Ga0207728_1034291 | 3300026833 | Tropical Forest Soil | METTDFTEQWSNMQKMFLASSEMSASFRESARRFWENQ |
Ga0207728_1070061 | 3300026833 | Tropical Forest Soil | MSTDFTEQWKKMQEMFLASSEMSASFRESARRFWENQGKLLDNMQALA |
Ga0207764_1057481 | 3300026839 | Tropical Forest Soil | MSTDFTEQWKKMQEMFLASSEMSASFRESARRFWENQGKLLDNMQALANGWFDRRRT |
Ga0207804_1046171 | 3300026849 | Tropical Forest Soil | MSTDFTEQWSNMQKMFLASSEMSASFRENARRFWENQGKVL |
Ga0207838_1010593 | 3300026852 | Tropical Forest Soil | METTDFTEQWSNMQKMFLASSEMSASFRESARRFWENQGKLLDDMQ |
Ga0207727_1123142 | 3300026854 | Tropical Forest Soil | METTDFTEQWSNMQKMFLASSEMSASFRESARRFWENQGKLLDD |
Ga0207859_10001291 | 3300026859 | Tropical Forest Soil | MSTDFTEQWSNMQKMFLASSEMSASFRESACRFWENQGKLLDDMQA |
Ga0207724_10090552 | 3300026862 | Tropical Forest Soil | MASTDFTEQWSSMQKMFLPSSEISATFRENARRFWENQGKVLDN |
Ga0207786_1020424 | 3300026866 | Tropical Forest Soil | MEATDFTEQWSNMQKMFLASSEMSASFRESARRFWENQGKLLDDM |
Ga0207825_1037321 | 3300026871 | Tropical Forest Soil | MSTDFTEQWSDMQKMFLASSEMSASFRESARRFWE |
Ga0207825_1056951 | 3300026871 | Tropical Forest Soil | MASTDFTEQWSSMQKMFLPSSEISATFTENARRFWENQGKVLDNMQALANGWFDRR |
Ga0207825_1083221 | 3300026871 | Tropical Forest Soil | METTDFTEQWSNMQKMFLASSEMSASFRENARQFWENQGKVLDNMQALANGW |
Ga0207785_10004311 | 3300026872 | Tropical Forest Soil | METTDFTEQWSNMQKMFLASSEMSASFRENARQFW |
Ga0207785_10072021 | 3300026872 | Tropical Forest Soil | MSTDFTEQWSNMQKMFLQSSEMSASFRESARLFWENQGKLLDNMQALANGWFDRRRTGTH |
Ga0207763_10056621 | 3300026879 | Tropical Forest Soil | MASTDFTEQWSSMQKMFLPSSEISATFTENARRFWENQGKVLDNMQALANG |
Ga0207781_10106912 | 3300026890 | Tropical Forest Soil | MASTDFTEQWSNMQKMFLPSSEISATFTENARRFWENQGKVLDNMQALANGWFD |
Ga0207758_10037961 | 3300026895 | Tropical Forest Soil | MEATDFTEQWSNMQKMFLASSEMSASFRESARRFWENQGKLLDDMQALAN |
Ga0207730_10022771 | 3300026896 | Tropical Forest Soil | METTDFTEQWSNMQKMFLASSEMSASFRENARQFWENQGKVLDNMQALANGWFDRRRTGT |
Ga0207788_10077031 | 3300026898 | Tropical Forest Soil | MASTDFTEQWSSMQKMFLPSSEISATFTENARRFWENQGKVLDNMQALANGWF |
Ga0207787_10112143 | 3300026908 | Tropical Forest Soil | MEATDFTEQWSNMQKMFLASSEMSASFRESARRFWENQGKLLDDMQALANGW |
Ga0207858_10003835 | 3300026909 | Tropical Forest Soil | MSTDFTEQWSNMQKMFLQSSEISASFRENARQFWENQGKVLDNMQALANVWFDRRRTGTHAAR |
Ga0207860_10025111 | 3300026921 | Tropical Forest Soil | METTDFTEQWSNMQKMFLASSEMSASFRESARRFWENQGKLLDDMQALAN |
Ga0207744_10007641 | 3300026927 | Tropical Forest Soil | MEITDFTEQWSNMQKMFLESSEMSASFRESARRFWENQGKLLDNMQALANG |
Ga0207816_10146923 | 3300026934 | Tropical Forest Soil | MSMDFTEQWSNMQKMFLQSSEMSASFRESARLFWENQGKVLDNMQALSNG |
Ga0207816_10452291 | 3300026934 | Tropical Forest Soil | METTDFTEQWSNMQKMFLASSEMSASFRESARRFWENQGKLLDDMQTLANGWF |
Ga0207741_10044205 | 3300026941 | Tropical Forest Soil | METTDFTEQWSNMQKMFLASSEMSASFRENARQFWENQGKVLDNMQALANGWFDRRRT |
Ga0207783_10302491 | 3300026942 | Tropical Forest Soil | MSTDFNEQWSNMQKMFLQSSEMSASFRESARQFWEIQGKALDNMQALAN |
Ga0207835_10204152 | 3300026953 | Tropical Forest Soil | MSTDFTEQWSNMQKMFLQSSEMSASFRESARRFWENQGKLLDNMQALANGWF |
Ga0207852_10151222 | 3300026959 | Tropical Forest Soil | MSTDFSEQWSNMQKMFLQSSEMSASFRESARLFWENQGKVLDNMQALANVWF |
Ga0207817_10136471 | 3300026979 | Tropical Forest Soil | MSTDFTEQWKKMQEMFLASSEMSASFRESARRFWENQGKLL |
Ga0207822_10001366 | 3300026981 | Tropical Forest Soil | MSTDFTEQWSNMQKMFLQSSEISATFRENARQFWENQGKVLDNMQALANDWFERRRTGTHAARE |
Ga0207822_10086253 | 3300026981 | Tropical Forest Soil | MASTDFTEQWSSMQKMFLPSSEISATFTENARRFWENQGKVLDNMQALANGWFDRRRTGT |
Ga0207822_10182261 | 3300026981 | Tropical Forest Soil | MEITDFTEQWSNMQKMFLESSEMSASFRESARRFWENQGKLLDNMQALA |
Ga0207854_10293461 | 3300026982 | Tropical Forest Soil | MSTDFTEQWSNMQKMFLASSEMSASFRESARQFWENQGKVL |
Ga0207784_10042463 | 3300026997 | Tropical Forest Soil | MSTDFTEQWRKMQEMFLASSEMSASFRESARRFWENQGKLL |
Ga0207839_10058521 | 3300027010 | Tropical Forest Soil | MSTDFTEQWKKMQEMFLASSEMSASFRESARRFWENQGKLLDNMQALANG |
Ga0207839_10097112 | 3300027010 | Tropical Forest Soil | MSTDFTEQWSNMQKMFLQSSEMSASFRESARRFWENQGKLLDNMQALANG |
Ga0207740_10182051 | 3300027011 | Tropical Forest Soil | MSMDFTEQWSNMQKMFLQSSEMSASFRESARLFWENQGKVLDNMQ |
Ga0207815_10003771 | 3300027014 | Tropical Forest Soil | MSTDFTEQWSNMQKMFLQSSEMSASFRESARLFWENQGKVLDNMQALANVW |
Ga0207857_10077043 | 3300027019 | Tropical Forest Soil | MSTDFSEQWSNMQKMFLQSSEMSASFRESARLFWENQG |
Ga0207857_10145321 | 3300027019 | Tropical Forest Soil | MASTDFTEQWSSMQKMFLPSSEISATFTENARRFWENQ |
Ga0207857_10163911 | 3300027019 | Tropical Forest Soil | MSTDFTEQWSNMQKMFLQSSEMSASFRESARLFWENQG |
Ga0207819_10207541 | 3300027024 | Tropical Forest Soil | MSTDFTEQWSNMQKMFLASSEMSASFRESARRFWENQGKLLDDMQALANG |
Ga0207726_10075132 | 3300027045 | Tropical Forest Soil | MSTDFTEQWSDMQKMFLASSEMSASFRESARRFWENQ |
Ga0207806_10025076 | 3300027049 | Tropical Forest Soil | MSTDFTEQWSNMQKMFLQSSEISASFRENARQFWENQGKVLDNMQALANVWF |
Ga0207806_10120551 | 3300027049 | Tropical Forest Soil | MASTDFTEQWSNMQKMFLPSSEISATFTENARRFWENQGKVLDNMQALANGWFDRRRTGA |
Ga0207762_10106661 | 3300027063 | Tropical Forest Soil | MSTDFTEQWSDMQKMFLASSEMSASFRESARRFWENQGKLLDNMQA |
Ga0207762_10156323 | 3300027063 | Tropical Forest Soil | MASTDFTEQWSNMQKMFLPSSEISATFTENARRFWENQGKV |
Ga0207762_10216612 | 3300027063 | Tropical Forest Soil | MSTDFTEQWKKMQEMFLASSEMSASFRESARRFWENQGKLLDNMQA |
Ga0207780_10539042 | 3300027313 | Tropical Forest Soil | MSTDFTEQWSDMQKMFLASSEMSASFRESARRFWENQGKLLDN |
Ga0207777_10746152 | 3300027330 | Tropical Forest Soil | MASTDFTEQWSNMQKMFLPSSEISATFTENARRFWEN |
Ga0207761_10323891 | 3300027516 | Tropical Forest Soil | MSTDFTEQWRKMQEMFLASSEMSASFRESARRFWENQGKLLDNMQA |
Ga0207862_10068854 | 3300027703 | Tropical Forest Soil | MSTDFTEQWRKMQEMFLASSEMSASFRESARRFWENQGKLLD |
Ga0207862_10908072 | 3300027703 | Tropical Forest Soil | MSTDFTEQWKKMQEMFLASSEMSASFRESARRFWENQGKLLD |
Ga0207862_11760971 | 3300027703 | Tropical Forest Soil | MASTDFTEQWSNMQKMFLPSSEISATFTENARRFWENQGKVLDNMQALANGW |
Ga0207862_11909371 | 3300027703 | Tropical Forest Soil | MSTDFTEQWSNMQKMFLASSEMSASFRENARRFWENQGKVLDNMQALANGWF |
Ga0310915_100934165 | 3300031573 | Soil | MSTDFTEQWSNMQKMFLQSSEMSASFRENARQFWENQGKVLDNMQALANGWFDRR |
Ga0306917_103341892 | 3300031719 | Soil | MASTDFTEQWSNMQKMFLPSSEISTTFRENARQFWENQGKVLDNMQALANGWFDRRRTG |
Ga0318546_111438402 | 3300031771 | Soil | MSTDFTEQWSNMQKMFLQSSEMSASFRENARQFWENQGKVLD |
Ga0310917_104911122 | 3300031833 | Soil | MSMDFTEQWNNMQKMFLPSSEISATFRENARQFWENQGKVLDNM |
Ga0318527_102158901 | 3300031859 | Soil | MSTDFTEQWSNMQKMFLESSEMSASFRESARRFWENQGKLLDNMQALANGWFDRRRTGAH |
Ga0306925_103883582 | 3300031890 | Soil | MSTDFTEQWNNMQKMFLPSSEISATFRENARQFWENQG |
Ga0306923_104233073 | 3300031910 | Soil | MSTDFSEQWTSMQKMFLPSSEISATFKENARQFWENQGKVLDNMQALAN |
Ga0306923_124422001 | 3300031910 | Soil | MSTDFTEQWNNMQKMFLPSSEISATFRENARQFWENQGKVLDN |
Ga0306921_109025931 | 3300031912 | Soil | MSTDFTEQWSNMQKMFLESSEMSASFRESARRFWENQGKLLDNMQALA |
Ga0306921_127505791 | 3300031912 | Soil | MASTDFTEQWSNMQKMFLPSSEISATFRENARQFWENQGKVLDNMQA |
Ga0310916_104120453 | 3300031942 | Soil | MSMDFTEQWNNMQKMFLPSSEISATFRENARQFWE |
Ga0310916_112682691 | 3300031942 | Soil | MSTDFTEQWSNMQKMFLQSSEMSASFRENARQFWENQGKVLDNMQA |
Ga0310911_101572531 | 3300032035 | Soil | MSTDFTEQWNNMQKMFLPSSEISATFRENARQFWENQGKVLDNMQA |
Ga0310911_101763931 | 3300032035 | Soil | MASTDFTEQWSNMQKMFLPSSEISATFRENARQFWENQGKVLDNMQAL |
Ga0318559_105970721 | 3300032039 | Soil | MSTDFTEQWSNMQKMFLESSEMSASFRESARRFWENQGKLLDNMQALANGWFDRRS |
Ga0318532_103095491 | 3300032051 | Soil | MSTDFTEQWSNMQKMFLASSEMSASFRESARQFWENQGKVLDNMQAFANAWF |
Ga0318533_109539381 | 3300032059 | Soil | MSTDFTEQWNNMQKMFLASSEMSASFRESARRFWENQGKLLDDMQALANGWFDRRRTG |
Ga0318577_106463651 | 3300032091 | Soil | MSTDFTEQWSNMQKMFLQSSEMSASFRENARQFWENQGKVLDNMQALANGWFDRRRTGTH |
Ga0306920_1003392602 | 3300032261 | Soil | MSTDFTEQWSNMQKMFLQSSEMSASFRENARQFWEN |
Ga0306920_1004553731 | 3300032261 | Soil | MSTDFTEQWNNMQKMFLPSSEISATFRENARQFWEN |
Ga0306920_1041863731 | 3300032261 | Soil | MASTDFTEQWSNMQKMFLPSSEISATFRENARQFWENQGKVLDNMQALANG |
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