NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F074180

Metagenome / Metatranscriptome Family F074180

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F074180
Family Type Metagenome / Metatranscriptome
Number of Sequences 120
Average Sequence Length 40 residues
Representative Sequence MTSASARTVANVVLVSAGVAAAYVVMTTPPLRRLAVRA
Number of Associated Samples 88
Number of Associated Scaffolds 120

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 88.89 %
% of genes near scaffold ends (potentially truncated) 91.67 %
% of genes from short scaffolds (< 2000 bps) 94.17 %
Associated GOLD sequencing projects 83
AlphaFold2 3D model prediction Yes
3D model pTM-score0.58

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (88.333 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(20.000 % of family members)
Environment Ontology (ENVO) Unclassified
(25.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(37.500 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.
1E4A_09514350
2JGI1356J14229_100616871
3Ga0066690_103111503
4Ga0070705_1017146491
5Ga0070678_1006479073
6Ga0070704_1016272721
7Ga0066707_109809661
8Ga0068856_1024638662
9Ga0068852_1017340182
10Ga0068864_1024110562
11Ga0068864_1026380642
12Ga0066903_1019151881
13Ga0068862_1015789302
14Ga0068862_1025039621
15Ga0066652_1005109213
16Ga0097621_1016153461
17Ga0075426_101084311
18Ga0066710_1046131032
19Ga0066709_1001635905
20Ga0099792_103504331
21Ga0127482_11224973
22Ga0126321_14762681
23Ga0126320_13802011
24Ga0126320_15039543
25Ga0126319_11108464
26Ga0126319_12651141
27Ga0126383_136939462
28Ga0134121_115653071
29Ga0102750_100046434
30Ga0102750_109365162
31Ga0136897_104875143
32Ga0136897_105847011
33Ga0136897_112540341
34Ga0136264_100669873
35Ga0136264_102035432
36Ga0136264_102605752
37Ga0136899_100300621
38Ga0126317_103120812
39Ga0126317_109477121
40Ga0150985_1052506473
41Ga0150985_1077971761
42Ga0150985_1081078181
43Ga0150985_1114273574
44Ga0150985_1115758973
45Ga0150985_1160239561
46Ga0134052_13273531
47Ga0134057_11449251
48Ga0134050_14192241
49Ga0150984_1002635884
50Ga0150984_1047700611
51Ga0150984_1074405594
52Ga0150984_1080847242
53Ga0150984_1129475831
54Ga0150984_1182594491
55Ga0150984_1209503781
56Ga0137359_108070641
57Ga0137410_100675021
58Ga0182021_116945091
59Ga0157377_107378751
60Ga0157376_118251651
61Ga0137412_107037712
62Ga0134112_103242003
63Ga0190275_127974601
64Ga0066662_101744756
65Ga0184643_13151542
66Ga0184644_15675603
67Ga0184642_11321001
68Ga0190264_105525101
69Ga0206356_117290501
70Ga0179584_11622151
71Ga0179958_10749221
72Ga0193719_101809711
73Ga0213853_115318741
74Ga0222624_10928642
75Ga0207695_104292514
76Ga0207681_102135861
77Ga0207690_114150082
78Ga0207704_105778351
79Ga0207704_105983983
80Ga0207711_103787351
81Ga0207667_114167622
82Ga0207676_119918671
83Ga0209688_10694881
84Ga0209811_100027631
85Ga0207428_106498391
86Ga0247685_10395282
87Ga0137415_101162621
88Ga0302047_102602062
89Ga0302047_103214051
90Ga0302047_103924954
91Ga0302047_107536312
92Ga0307282_106459342
93Ga0307305_102281713
94Ga0102758_107834841
95Ga0102757_101199062
96Ga0073999_108381912
97Ga0102744_17322431
98Ga0102749_14702432
99Ga0308200_10169264
100Ga0102745_10207211
101Ga0308190_10403223
102Ga0308190_11860142
103Ga0073998_106777952
104Ga0308189_100277001
105Ga0308189_100396051
106Ga0308189_100562821
107Ga0308189_101579771
108Ga0308189_103422841
109Ga0308201_101919752
110Ga0308204_100183591
111Ga0308204_100206074
112Ga0308204_100919323
113Ga0308197_100273214
114Ga0308188_10085931
115Ga0308187_102837181
116Ga0308195_10105011
117Ga0310915_107128891
118Ga0318552_105470421
119Ga0310916_116717461
120Ga0307416_1020693261
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 51.52%    β-sheet: 0.00%    Coil/Unstructured: 48.48%
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5101520253035MTSASARTVANVVLVSAGVAAAYVVMTTPPLRRLAVRAExtracel.Cytopl.Sequenceα-helicesβ-strandsCoilSS Conf. scoreTM segmentsTopol. domains
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Predicted 3D Structure

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Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.58
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
88.3%11.7%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Visualization
Groundwater Sediment
Watersheds
Soil
Groundwater
Soil
Vadose Zone Soil
Terrestrial Soil
Tropical Forest Soil
Grasslands Soil
Surface Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Soil
Grasslands Soil
Grass Soil
Soil
Fen
Tropical Forest Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Avena Fatua Rhizosphere
Corn Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Miscanthus Rhizosphere
Miscanthus Rhizosphere
Populus Rhizosphere
Rhizosphere
Switchgrass Rhizosphere
Corn Rhizosphere
Miscanthus Rhizosphere
Switchgrass Rhizosphere
Corn Rhizosphere
Avena Fatua Rhizosphere
3.3%5.8%17.5%5.8%4.2%3.3%20.0%5.0%4.2%5.8%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
E4A_095143502170459003Grass SoilMTDASARTAANLILASAGIAAAYVVLTKPPLRRVASLAVRIWLGASVP
JGI1356J14229_1006168713300001380GroundwaterMTDATARTVANVVLASAAAAATYVVLTRPPLRRLA
Ga0066690_1031115033300005177SoilMTAPSARTVANAVLATAGVAAAYVVITTPPLRRFALRGIRW
Ga0070705_10171464913300005440Corn, Switchgrass And Miscanthus RhizosphereMTDANARTAANVILVSAGIAAAYVILTRPPLRRLALRAAEIWLGASV
Ga0070678_10064790733300005456Miscanthus RhizosphereMTEANARTVANVVLVSAGVAAAYVILTKPPLRRLAFRAVE
Ga0070704_10162727213300005549Corn, Switchgrass And Miscanthus RhizosphereVTSANARTVANVVLATAGVAAAYVIWTTPSLRRLALRGARLWLG
Ga0066707_1098096613300005556SoilMTATTARTVANVVLASAGVAAACVVLTTPPLRRLAVR
Ga0068856_10246386623300005614Corn RhizosphereMTDEQARTAADLVLVSAGIAVAYVVLSRPRLRRFAFRAIRYWLG
Ga0068852_10173401823300005616Corn RhizosphereMTDARARTAANVVLASAGIAAAFVVLTKPPLRRLAFRAVELWLGASVP
Ga0068864_10241105623300005618Switchgrass RhizosphereMTDANARTAANLVLASAGIAAAYVVLTKPPLRRLAFRAVEYW
Ga0068864_10263806423300005618Switchgrass RhizosphereMTDANARTAANVVLVGAGVAAAYVILTKRPLRRLAFKAFEFWLGAS
Ga0066903_10191518813300005764Tropical Forest SoilVTREHARTAANVLIASAGVAAAYVVLTTPPLRRLAFQAMRV
Ga0068862_10157893023300005844Switchgrass RhizosphereMTDANARTAANLILVSAGIAAAYVILSKPPLRRLALRAAEIWLGASVPV
Ga0068862_10250396213300005844Switchgrass RhizosphereMTGATARSVANVVLISAGVAAAYVVVTTPPLRRLA
Ga0066652_10051092133300006046SoilMTTGTARTVANVLLASAGLAAAYVILTTPPLRRLAL
Ga0097621_10161534613300006237Miscanthus RhizosphereMTDASARTAANLILASAGLAAAYAVLTKPPLRRVASLAVRF
Ga0075426_1010843113300006903Populus RhizosphereMTRTTARTVANVVLATAGVAAAYVVITTPPLRRLA
Ga0066710_10461310323300009012Grasslands SoilMTQAEARTAANAILVTAGVAVAYAVLSTPPLRRLAAQCARVWLCRAVP
Ga0066709_10016359053300009137Grasslands SoilMTEPTARTVANAVLATAGVAAAYVVITTPPLRRLA
Ga0099792_1035043313300009143Vadose Zone SoilMTQAQARTVANVILATAGVAAAYVVLTTPPLRRLA
Ga0127482_112249733300010126Grasslands SoilMTDSEARSVANVVLVGAGLAAAYVFITTPPLRRLAATGIRW
Ga0126321_147626813300010145SoilMTRSTARAVANVALITSGVAAAYVVVTTPPLRRLAVNSFRWWL
Ga0126320_138020113300010146SoilMTSTNARTVANVVLASAGAAAVYVVMTTPSLRRLAVQ
Ga0126320_150395433300010146SoilMTDADARNAADLILASAAVVAAYVVLTKPPLRRLAFAAVRYWL
Ga0126319_111084643300010147SoilMAGPVARTVANAVLVSAGVAAAYVIVTTPSLRRLAIGA
Ga0126319_126511413300010147SoilMTDRNARTAANVVLVSAGVAAAYLVLTRPPLRRLAFRAVQLYL
Ga0126383_1369394623300010398Tropical Forest SoilMTRDAARTTANVVLASAGVAAAYVVFTTPPLRRVVVRGLRLW
Ga0134121_1156530713300010401Terrestrial SoilVTRDRARTVANVLIASAGVAAAYVVLTTPPLRRLAFQAVRVWLG
Ga0102750_1000464343300010870SoilMTRADARTAANLVLVAAGVAAAYVVITTPPLRRLAVRATRNKNKGKK*
Ga0102750_1093651623300010870SoilMTGASARTTANLVLAVAGVAAAYVVVTTPPLRRNEIK*
Ga0136897_1048751433300010872SoilMTKATARATANLMLTAAGVAAAYVVITTPPLRRQNNT
Ga0136897_1058470113300010872SoilMTTESARTASNAILVTAGVVAAYVVLTTPPLRRLALNEGKN*
Ga0136897_1125403413300010872SoilMTSESARTASTMILVSAGVAAAYVVLTTPPLRRLV
Ga0136264_1006698733300010874SoilMTTESARTASTAILVTAGVAAAYVVLTTPPLRRLAFMGVKTADT
Ga0136264_1020354323300010874SoilMTSESARTASTMILVSAGVAAAYVVLTTPSLRRLVDLR
Ga0136264_1026057523300010874SoilMTTDSARTASNAILLAAGVAAAYVVLTTPPLRRLAVTGGKRIRKKK
Ga0136899_1003006213300010878SoilMTKATARATANLMLTAAGVAAAYVVITTPPLRRQNNTDD
Ga0126317_1031208123300011332SoilMDRATARTVANLVLVSAGAAVAYVVITTPPLRRLAWAG
Ga0126317_1094771213300011332SoilMTSDSARTASTVILVSAGLAAAYVVLTTPPLRRLALMGVRW
Ga0150985_10525064733300012212Avena Fatua RhizosphereMTPQQARTAANIILGTAGLVAAYVVITTPPLRRLKQANNV
Ga0150985_10779717613300012212Avena Fatua RhizosphereMTAPTARTVANLFLATAGVGAADVVITAPPPRRPAGA
Ga0150985_10810781813300012212Avena Fatua RhizosphereVTRANARTVANLALVSAGVAAAVVVITTPPLRRLAVRGIRLWLGA
Ga0150985_11142735743300012212Avena Fatua RhizosphereMTRENARTVANLVIASAGITAAYVVLTTPPLRRLAMQAARV
Ga0150985_11157589733300012212Avena Fatua RhizosphereMTGASARATANLVLAAAGVAAAYVILTKPPLRRLAGR
Ga0150985_11602395613300012212Avena Fatua RhizosphereMTQQNARMVANVMIASPGVAAAYVVLTTPPLRRLAM
Ga0134052_132735313300012393Grasslands SoilMTTGTARTVANVLLASAGLAAAYVILTTPPLRRLALGGLKLW
Ga0134057_114492513300012396Grasslands SoilVTKTTAHTVANVVLASAGLAAAFVILTNPPLRRLALQATRWW
Ga0134050_141922413300012407Grasslands SoilMTGPTARTVANAVLATAGVAAAYVVITTPPLRRLAVRAIRVWL
Ga0150984_10026358843300012469Avena Fatua RhizosphereMMTRAEAQTTADLVLAGVGVAAAVVVITTPPLRRLAARALRIWP
Ga0150984_10477006113300012469Avena Fatua RhizosphereMGKPAARTVANVVLATAGLAAAYVMVTTPPLRRLALR
Ga0150984_10744055943300012469Avena Fatua RhizosphereMTTGNARTAANVLLGVAGVAAAYVVLTTPPLRRLAFRAARVWP
Ga0150984_10808472423300012469Avena Fatua RhizosphereMTTEAARTTSHVILVSAGVAAAYVVLTTPPLRRLASMG
Ga0150984_11294758313300012469Avena Fatua RhizosphereMTRDRAHTIANVAIASASVAAAYVVLRTPPLRRLAFQA
Ga0150984_11825944913300012469Avena Fatua RhizosphereMMTRAEAQTTADLVLAGVGVAAAIVVITTPPLRRLAARALRV
Ga0150984_12095037813300012469Avena Fatua RhizosphereMTDANARTAADLVLLSAGVAAAYVVLTRPPLRRLA
Ga0137359_1080706413300012923Vadose Zone SoilMTDSDARSVANVVLVSAGMAAAYVIITTPPLRRLAANGLRWWLG
Ga0137410_1006750213300012944Vadose Zone SoilMTRATARTVANVVLASAGVAAAFVVITNPPLRRLALRVTRVW
Ga0182021_1169450913300014502FenMTDENARTVANVVLVSAGAAAAYVVLTKPPLRRFAFKM
Ga0157377_1073787513300014745Miscanthus RhizosphereMTDANARTAANVILVSAGIAAAYVILSKPPLRRLAIRAAEIWLGASVPVF
Ga0157376_1182516513300014969Miscanthus RhizosphereMTSATARTVANVVLISAGVAAAYVVVTTPPLRRLALRGAEWWLG
Ga0137412_1070377123300015242Vadose Zone SoilMTDENARTAANVVLVSAGVAVAYLVLTKPPLRRLAVR
Ga0134112_1032420033300017656Grasslands SoilMTATTARTVANVVLASAGVAAAYVVLTTPPLRRLAVRAIEVW
Ga0190275_1279746013300018432SoilMTSESARTASTMILVSVGVAAAYVVLTTPPLRRLVTTGLRLYLGASV
Ga0066662_1017447563300018468Grasslands SoilMTATTARTVANVVLASAGVAAAYVVLTTPPLRRLAVRAIEGWLG
Ga0184643_131515423300019255Groundwater SedimentMTDENARTTANVVLVSAGVAVAYLVLTKPPLRRLAVRAVRGCD
Ga0184644_156756033300019269Groundwater SedimentMTDENARTAANVVLVSAGVAVAYLVLTKPPLRRLAVRAVQMWLGASVP
Ga0184642_113210013300019279Groundwater SedimentMTEANARTVANLILVSAGLAAAYFVMTTPPLRRMALRAARLWLG
Ga0190264_1055251013300019377SoilMTSANARTVANLVLISAGVAAAYVVITTPPLRRLALR
Ga0206356_1172905013300020070Corn, Switchgrass And Miscanthus RhizosphereVTRSGARTAADVVLVTAGVAAAYVVLTTPPLRRLAFRGLRWR
Ga0179584_116221513300021151Vadose Zone SoilVTREHARTFANVAIASAGVAAAYVVLTTPPLRRLALQ
Ga0179958_107492213300021315Vadose Zone SoilMTDENARTAANVVLVSAGVAVAYLVLTKPPLRRLAVRAVQLWL
Ga0193719_1018097113300021344SoilMTSASARTVANVVLVSAGVAAAYVVMTTPPLRRLAVRA
Ga0213853_1153187413300021861WatershedsMTEQNARTAANAVLATAGVAAAYLVLTKPPLRRLAVKAVQL
Ga0222624_109286423300021951Groundwater SedimentMTDENARTAANVVLVSAGVAVAYLVLTKPPLRRLAVRAVQLW
Ga0207695_1042925143300025913Corn RhizosphereMTDEQARTVANVVLASAGVAAAYVVITTPSLRRLAFR
Ga0207681_1021358613300025923Switchgrass RhizosphereMAGPVARTVANAVLVSAGVAAAYVIVTTPSLRRLAIGATR
Ga0207690_1141500823300025932Corn RhizosphereMTRSTAHSVANVVLVSAGLAAAYVVITTPPLRRLAANGIRWWLG
Ga0207704_1057783513300025938Miscanthus RhizosphereMTDANARTAANLVLASAGIAAAYVVLTKPPLRRLAFRAVEYWLGATVPVF
Ga0207704_1059839833300025938Miscanthus RhizosphereVTSANARTVANVVLATAGVAAAYVIWTTPSLRRLALRGARLWLGA
Ga0207711_1037873513300025941Switchgrass RhizosphereMTRSTAHSVANVVLVSAGLAAAYVVITTPPLRRLAANGIRW
Ga0207667_1141676223300025949Corn RhizosphereMTDGQARTAANVVLASAGVAAAYVILTKPPLRRLAFRALEFWLG
Ga0207676_1199186713300026095Switchgrass RhizosphereMTDANARTAANLVLASAGIAAAYVVLTKPPLRRLAFRAVEYWLGATVPV
Ga0209688_106948813300026305SoilVTREHARTFANVAIASAGVAAAYVVLTTPPLRRLAFQALR
Ga0209811_1000276313300027821Surface SoilMTSATARTVANVVLISAGVAAAYVVVTTPPLRRLALRGTEWWL
Ga0207428_1064983913300027907Populus RhizosphereMTSATARTVANVVLISAGVAAAYVVVTTPPLRRLALRGAEW
Ga0247685_103952823300028065SoilMTKENARLVANLAIASAGVAAAYVVLTTPPLRRFAMR
Ga0137415_1011626213300028536Vadose Zone SoilMTASTARTVANVVLATAGVAAAYVVITTPPLRRLAARA
Ga0302047_1026020623300028554SoilMTGASARTTANLVLAVAGVAAAYVVVTTPPLRRNEIK
Ga0302047_1032140513300028554SoilMTTESARTASNAILVTAGVVAAYVVLTTPPLRRLALTGMR
Ga0302047_1039249543300028554SoilMTRADARTAANLVLVAAGVAAAYVVITTPPLRRLAVRATRNKNKGKK
Ga0302047_1075363123300028554SoilMTTDSARTASNAILLAAGVAVAYVVLTTPPLRRLAV
Ga0307282_1064593423300028784SoilMTRSTAHSVANVMLVSAGLAAAYVVITTPPLRRLAANGIRWWLGA
Ga0307305_1022817133300028807SoilMTSANARTVANVILASAGVAAAYVILTTPSLRRLAFRGAQLWL
Ga0102758_1078348413300030784SoilMTTESARTASTAILVTAGVAAAYVVLTTPPLRRHED
Ga0102757_1011990623300030785SoilMTAESARTASTAILISAGVAAAYVVLTTPPLRRLAFLGVR
Ga0073999_1083819123300030839SoilMTRSAARSVANVVLVSAGVAAAYVVITTPPLRRLAA
Ga0102744_173224313300030866SoilMTTESARTASNLILLSAGVVAAYVVLTTPPLRRLA
Ga0102749_147024323300030867SoilMTAESARTASTAILISAGVAAAYVVLTTPPLRRLAFL
Ga0308200_101692643300030905SoilMTRSAAHSVANVVLVSAGLAAAYVVITTPPLRRLAANGIR
Ga0102745_102072113300030960SoilMTTDSARTASNAILLAAGVAVAYVVLTTPPLRRLAVMEKRKRI
Ga0308190_104032233300030993SoilMTDSTARSVANVVLVSAGLAAAYVVITTPPLRRLAANGLRWWLGAGVP
Ga0308190_118601423300030993SoilMTDSEARSVANVVLVAAGLAAAYVVITTPPLRRLA
Ga0073998_1067779523300031023SoilMTDATARTVANVIVATVGLATAYVIITTPPLRRAADSRK
Ga0308189_1002770013300031058SoilMTSESARTVSNAILVTAGVAAAYVVLTTPPLRRLAGVGIRLWL
Ga0308189_1003960513300031058SoilMTDSEARSVANVVLVAAGLAAAYVVITTPPLRRLAA
Ga0308189_1005628213300031058SoilMTTESARTVSNAILVTAGVAAAYVVLTTPPLRRLAV
Ga0308189_1015797713300031058SoilMTTESARTVSNAVLVTAGVAAAYVVLTTPPLRRLAVVGIRLWL
Ga0308189_1034228413300031058SoilMTAESARTASTAILVTAGVAAAYVVLTTPPLRRLA
Ga0308201_1019197523300031091SoilMTDENARTAANVVLVSAGIAAAYVILTKPPLRRLAFRAVEIWLGASLPAFVM
Ga0308204_1001835913300031092SoilMTSESARTVSNAILVTAGVAAAYVVLTTPPLRRLAGVGIRLWLG
Ga0308204_1002060743300031092SoilMTSESARTASTMILVSAGLAAAYVVLTTPPLRRLVA
Ga0308204_1009193233300031092SoilMTSANARVTANVVLASAAVAAAYVVLTTPSLRHLAF
Ga0308197_1002732143300031093SoilMTDANARTVANVILVSAGVAAAYLVITTPPLRRVALRVV
Ga0308188_100859313300031097SoilVTSTTARTVANVVLVSAGVAAAYVVITTPPLRRLAFRATRLW
Ga0308187_1028371813300031114SoilMTDANARTVANVILVSAGVAAAYLVITTPPLRRVA
Ga0308195_101050113300031123SoilMTRSTARSVANVVLVSAGVAAAYVVITTPPLRRKN
Ga0310915_1071288913300031573SoilMTDANARTAANLVLASAGIAAAYVVLTKPPLRRLAFLA
Ga0318552_1054704213300031782SoilMTDANARTAANLVLASAGIAAAYVVLTKPPLRRLAFLAVRYWLGASVP
Ga0310916_1167174613300031942SoilMTRENARLAANAVLVAAGVAAAYVVLTRPPLRRLAARAAR
Ga0307416_10206932613300032002RhizosphereMTTSAARTVANVVLITAGAAAAYAIVASPPLRRLAGHGLRWW


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