Basic Information | |
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Family ID | F074177 |
Family Type | Metagenome |
Number of Sequences | 120 |
Average Sequence Length | 44 residues |
Representative Sequence | MKNNVYQKKSALSVFFSQLAKNFVALFESGNKREFQRLKDFITS |
Number of Associated Samples | 87 |
Number of Associated Scaffolds | 120 |
Quality Assessment | |
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Transcriptomic Evidence | No |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 0.83 % |
% of genes near scaffold ends (potentially truncated) | 30.83 % |
% of genes from short scaffolds (< 2000 bps) | 59.17 % |
Associated GOLD sequencing projects | 74 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.36 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (92.500 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil (15.833 % of family members) |
Environment Ontology (ENVO) | Unclassified (45.833 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Host-associated → Plant → Plant rhizosphere (50.833 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66 |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 51.39% β-sheet: 0.00% Coil/Unstructured: 48.61% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.36 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Freshwater Sediment Groundwater Sediment Soil Soil Vadose Zone Soil Terrestrial Soil Compost Soil Agricultural Soil Sugarcane Root And Bulk Soil Arctic Peat Soil Permafrost Soil Soil Forest Soil Soil Rice Paddy Soil Tropical Peatland Fen Corn, Switchgrass And Miscanthus Rhizosphere Corn Rhizosphere Fen Ant Dump Corn Rhizosphere Switchgrass Rhizosphere Corn, Switchgrass And Miscanthus Rhizosphere Corn Rhizosphere Corn Rhizosphere Miscanthus Rhizosphere Switchgrass Rhizosphere Miscanthus Rhizosphere Corn Rhizosphere Sugar Cane Bagasse Incubating Bioreactor Wastewater Bioreactor |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
GPICI_00933560 | 2088090015 | Soil | MKTDVYQKKTQLSMFLSNLHRNFVALFESGNKREFQRLKDFITS |
NODE_07332075 | 3300000156 | Sugar Cane Bagasse Incubating Bioreactor | MKDNAYESKSAFSAFLKNLARNFVALFESGNKRDFQRLKDFITH* |
JGI20207J14881_10004686 | 3300001398 | Arctic Peat Soil | MKNATHENKSLFSVFFKNLAKNFAALFESGNKKEFQRLKEFISS* |
JGI20207J14881_10044793 | 3300001398 | Arctic Peat Soil | MKHQDYHSKSALSIFFSHIAKSFVALFESGNKREFQRLKDFISS* |
JGI20205J14842_10002597 | 3300001403 | Arctic Peat Soil | MKHQDYHSKSALSIFLSHIAKSFVALFESGNKKEFQRLKDFISS* |
A15PFW1_100981295 | 3300001534 | Permafrost | MKNQDYQNPTALSLFFSHLAKNFVALFESGNQREFQRLKDFITS* |
A10PFW1_109647731 | 3300001538 | Permafrost | MKNQVYQKKTAFSMFFHTLSKNFIALFESGNKKEFQRLKDF |
JGI24809J26612_10014664 | 3300002100 | Soil | MKTQMTQKKTVLSVFFTALSKNLIALFESGDKKEFQRLKDFISS* |
JGI24809J26612_10075345 | 3300002100 | Soil | MKTQITQKKTVLSVFFTALSKNFIALFESGDKKEFQRLKDFISS* |
soilH1_101930195 | 3300003321 | Sugarcane Root And Bulk Soil | MKNNAYESKSAFSVFLKNFARNFVALFESGNKRDFQRLKDFITS* |
JGI26528J50254_10001394 | 3300003402 | Wastewater Bioreactor | MKNQSYQSKSALSLFFSHLAKNFIALFESGNKREFQRLKDFIAS* |
Ga0062593_1002221512 | 3300004114 | Soil | MKTEVYQKKTVLSQFFSNLSKNFIALFETGNKKEFQRLKDFISS* |
Ga0074071_10836942 | 3300005258 | Soil | MKNEVYQNKSALSIFLRHVAKNFLAFFESGNKRDFQRLKDFITS* |
Ga0070658_100542392 | 3300005327 | Corn Rhizosphere | MKNNVYQKKSALSVFFSQVAKNFVALFESGNKREFQRLKDFITS* |
Ga0070658_100620522 | 3300005327 | Corn Rhizosphere | MKNQVYQKKTAITVFFNSLSKNLVALFEAPDKREFQRLKDFISS* |
Ga0070658_100648652 | 3300005327 | Corn Rhizosphere | MKNNAYESKSAFSVFLKNFTRNFVALFESGNKRDFQRLKDFITS* |
Ga0070658_103628842 | 3300005327 | Corn Rhizosphere | MKNQVYQKKTAVSVFFHTLSKNFIALFESGNKKEFQRLKDFIAH* |
Ga0070658_104995742 | 3300005327 | Corn Rhizosphere | MKNQNYQKPSVLALFFNHVAKNFVALFESGNKREFQRLKDFITS* |
Ga0070683_1002334112 | 3300005329 | Corn Rhizosphere | MKNQVYQKKPVFTVFISNLSKNLVALFESPDKREFQRLKDFITS* |
Ga0070680_1011573122 | 3300005336 | Corn Rhizosphere | MKNPAYKRKSALSVFFSYLAKNFVALFESGNKREFQRLKDFITS* |
Ga0070682_1012813492 | 3300005337 | Corn Rhizosphere | MKNNVYQKKSALSVFFSQLAKNFVALFESGNKREFQRLKDFITS* |
Ga0070660_1000125964 | 3300005339 | Corn Rhizosphere | SNSMKNQVYQKKPVFTVFISNLSKNLVALFESPDKREFQRLKDFITS* |
Ga0070660_1013478292 | 3300005339 | Corn Rhizosphere | MKNQVYQRKSALSVFFSYLAKNFVALFESGNKREFQRLKDFITS* |
Ga0070661_1002039152 | 3300005344 | Corn Rhizosphere | MKNQVYQKKPVFTVFISNLSKNLAALFESPDKREFQRLKDFITS* |
Ga0070661_1009336432 | 3300005344 | Corn Rhizosphere | MKNQVYQKKTVLAVFLSNLSKNFIALFESGDKREFQRLKDFISS* |
Ga0070671_1011580862 | 3300005355 | Switchgrass Rhizosphere | MKNEVYQKKTVLSQFFSNLSKNFIALFETGNKKDFQRLKDFISS* |
Ga0070694_1009730061 | 3300005444 | Corn, Switchgrass And Miscanthus Rhizosphere | MKTQMTQKKTVLSVFFTALSKNFIALFESGDKKEFQRLKDFISS* |
Ga0070679_1003260681 | 3300005530 | Corn Rhizosphere | FLKFHVMKNNVYQKKSALSVFFSQVAKNFVALFESGNKREFQRLKDFITS* |
Ga0070684_1009660102 | 3300005535 | Corn Rhizosphere | MNDFFTLMYQSYLLTIFKPTVMKNQVYQKKTAISLFFSYFSKNIVALFESGNKKEFQRLKDFITS* |
Ga0068853_1018887052 | 3300005539 | Corn Rhizosphere | MKNQVYQRKSVFSVFFSNLAKNFAALFESGNKREFQRLKDFITS* |
Ga0070665_1011338852 | 3300005548 | Switchgrass Rhizosphere | MKNQVYQKKTVLSLFLSNLSKNFIALFESGDKKEFQRLKDFISS* |
Ga0068855_1004566972 | 3300005563 | Corn Rhizosphere | MKNNVYQRKSAFSVFFSQLAKNFVALFESGNKREFQRLKDFITS* |
Ga0068855_1011523412 | 3300005563 | Corn Rhizosphere | ISKSAFSVFFKHLTKNFVALFESGNKREFQRLKDFITS* |
Ga0068855_1018536131 | 3300005563 | Corn Rhizosphere | MKNQVYQKKTAITVFFNSLSKNLVALFEAPDKREFQRLKDFI |
Ga0068854_1001530085 | 3300005578 | Corn Rhizosphere | MKNQVYQKKTVLAVFLSNLSKNFIALFESGDKREFQ |
Ga0068852_1002873651 | 3300005616 | Corn Rhizosphere | KNKYHYPLLKTKFMKNQVYQKKTAVSVFFHTLSKNFIALFESGNKKEFQRLKDFIAH* |
Ga0068859_1024612982 | 3300005617 | Switchgrass Rhizosphere | MKTQMTQKKTVLSVFFTALSKNFIALFESGDKKEFQRLKDFIS |
Ga0075283_10860282 | 3300005891 | Rice Paddy Soil | MKNDAYESKSALTVFFKHVAKNFVALFESGNKREFQRLKDFITS* |
Ga0075271_100654242 | 3300005899 | Rice Paddy Soil | MKNHSYENKSAFSQLLKHVAKNFVALFESGNKREFQRLK |
Ga0079222_111164681 | 3300006755 | Agricultural Soil | SAFSLFCRNLARNFVALFESGNKREFQRLKDFITS* |
Ga0079221_100016572 | 3300006804 | Agricultural Soil | MKHSAPHKKSLLTVFFSNLSKNFIALFESGNKRDFQKLKDFITS* |
Ga0075528_101787681 | 3300006949 | Arctic Peat Soil | MKNQVYQKKTAFSMFFHTLSKNFIALFESGNKKEFQRLKDFITS* |
Ga0075528_102287032 | 3300006949 | Arctic Peat Soil | LLVMKNQVYQKRSVFSLFFSQITKNFVALFESGNKKEFQRLKDFITS* |
Ga0075524_100231633 | 3300006950 | Arctic Peat Soil | MKKHVKQKKTVLSLFFSNLTKNFIALFESGNKKEFQRLKDFITS* |
Ga0075524_100342344 | 3300006950 | Arctic Peat Soil | MKNQVYQKRSVFSLFFSQITKNFVALFESGNKKEFQRLKDFITS* |
Ga0075524_102168272 | 3300006950 | Arctic Peat Soil | MKNQVYQKRSVFSLFFSQIAKNFVALFESGNKKEFQRLKDFITS* |
Ga0104326_13469232 | 3300007740 | Soil | MKNQVYQKKTGFSVFFRTLSKNFIALFESGNKKEFQRLKDFITS* |
Ga0104324_1349983 | 3300007820 | Soil | MKKQVYQKKTVVSLFFSNLSKNFIALFESGNKKEFQRLKDFITS* |
Ga0134125_100022144 | 3300010371 | Terrestrial Soil | MKNNVYQRKSAMSVFLSQLAKNFVALFESGNKREFQRLKDFITS* |
Ga0134125_126756061 | 3300010371 | Terrestrial Soil | MKNQVYQKKTAVSVFFHTLSKNFIALFESGNKKEFQRLKDFI |
Ga0134126_1000117619 | 3300010396 | Terrestrial Soil | MKNETHENKSLFSVFFKNLAKNFAALFESGNKKEFQRLKEFITS* |
Ga0134126_1000230312 | 3300010396 | Terrestrial Soil | MKNQDYQHKSALSLFFSHLAKNFIALFESGNDKEFQRLKDFISS* |
Ga0137365_108201691 | 3300012201 | Vadose Zone Soil | MKIKTASQKSSFKLFMSKLSKKFILLFESGSKKESQRLKDFISS* |
Ga0164242_103356812 | 3300012942 | Compost | MKNQAYQKKSALSLFLSQLAKNFVALFESGNKRDFQRLKDFITS* |
Ga0164299_116600121 | 3300012958 | Soil | EFLTLFKSSVMKKQDYQKKTVLSLFFNNLSKNFIALFESGNKKEFQRLKDFISS* |
Ga0157371_1000036119 | 3300013102 | Corn Rhizosphere | MMKNPVYPRKSALSVFFSYFAKNFVALFESGNKREFQRLKDFITS* |
Ga0157371_100028634 | 3300013102 | Corn Rhizosphere | MKNDAYESKSALTVFFKNVAKNFVALFESGNKREFQRLKDFITS* |
Ga0157371_100252692 | 3300013102 | Corn Rhizosphere | MRNDAYESKSAFSLFFKHLAKNFVALFESGNKREFQRLKDFITS* |
Ga0157371_100379372 | 3300013102 | Corn Rhizosphere | MKNDANESKSALSVFFKHFAKNFVALFESGNKREFQRLKDFITS* |
Ga0157371_101572081 | 3300013102 | Corn Rhizosphere | KSNSMKNQVYQKKPVFTVFISNLSKNLVALFESPDKREFQRLKDFITS* |
Ga0157370_106677202 | 3300013104 | Corn Rhizosphere | MKNQVYQKRTAFTVFFNNLSKNLVALFESPNKREFQ |
Ga0157369_100193382 | 3300013105 | Corn Rhizosphere | MKNNAYESKSAFSIFLKNFTRNFVALFESGNKRDFQRLKDFITS* |
Ga0157374_100657772 | 3300013296 | Miscanthus Rhizosphere | MKNQVYQKKTAISVLFNYFSKNIVALFESGNKKEFQRLKDFITS* |
Ga0157378_101186212 | 3300013297 | Miscanthus Rhizosphere | MKTEMTQKKTVLSVFFTALSKNFIALFESGDKKEFQRLKDFISS* |
Ga0157372_101560311 | 3300013307 | Corn Rhizosphere | KTKFMKNQVYQKKTAVSVFFHTLSKNFIALFESGNKKEFQRLKDFIAH* |
Ga0120106_10152692 | 3300013427 | Permafrost | MKNQVYQKQSVFSHFFSQVAKNFVALFESGNKKEFQRLKDFITS* |
Ga0120158_102864431 | 3300013772 | Permafrost | MKNQIDQKKTVLSMFISNLSKNFIALFESGNKKEFQRLKD |
Ga0182019_103179701 | 3300014498 | Fen | MKNQVYQKKTAFSVFFHTLSKNFVALFESGNKKEFQRLKDFIAH* |
Ga0182744_100023956 | 3300017553 | Compost | MKNQVYQKRSLFSQFIGEFMKNLSALFESSDKKEFQRLKNFIAS |
Ga0187809_100113502 | 3300017937 | Freshwater Sediment | MKKYANQKRSPWTLFFSHLSKNFIALFESGNKKEFQRLKDFISS |
Ga0187779_109085371 | 3300017959 | Tropical Peatland | CFMKHAANQKKSVLNVFFSNLSKNFMALFESGNKKEFQKLKDFITS |
Ga0193710_10250721 | 3300019998 | Soil | NPNFMKTQMTQKKTVLSVFFTALSKNFIALFESGDKKEFQRLKDFISS |
Ga0193718_10011714 | 3300019999 | Soil | MKNQVYQKKTAFSVFFHALSKNFIALFESGNKKEFQRLKDFITS |
Ga0193721_11185892 | 3300020018 | Soil | MKKQDYQKKTVLSLFFNSLSKNFIALFESGNKKEFQRLKDFISS |
Ga0206107_10640372 | 3300020137 | Ant Dump | YQKSYFMKNHANQKKSALSVFFAHLAKNFAALFESGNKREFQRLKDFITS |
Ga0210402_117961382 | 3300021478 | Soil | NKYYNPFLKPSFMKNQVYQKKTAFSMFFHTLSKNFIALFESGNKKEFQRLKDFITS |
Ga0222622_111439112 | 3300022756 | Groundwater Sediment | MKTQMTQKKTVLSVFFTALSKNLIALFESGDKKEFQRLKDFISS |
Ga0209941_100036553 | 3300024978 | Wastewater Bioreactor | MKNQSYQSKSALSLFFSHLAKNFIALFESGNKREFQRLKDFIAS |
Ga0207932_10759772 | 3300025495 | Arctic Peat Soil | MKKHVKQKKTVLSLFFSNLTKNFIALFESGNKKEFQRLKDFITS |
Ga0208717_100002769 | 3300025574 | Arctic Peat Soil | MKHQDYHSKSALSIFFSHIAKSFVALFESGNKREFQRLKDFISS |
Ga0208717_10090544 | 3300025574 | Arctic Peat Soil | MKNHVYQKKSVLAIFFRQLSKKFAALFDSGNKREFQRLKDFIAS |
Ga0208717_10093112 | 3300025574 | Arctic Peat Soil | MKNQVYQKKTAFSVFFHTLSKNFIALFESGNKKDFQRLKDFITS |
Ga0208355_10148703 | 3300025581 | Arctic Peat Soil | MKNQVYQKKTPFSMFFHTLSKNFIALFESGNKKEFQRLKDFITS |
Ga0208586_10440862 | 3300025588 | Arctic Peat Soil | MKHQDYHSKSALSIFLSHIAKSFVALFESGNKKEFQRLKDFISS |
Ga0207933_100002344 | 3300025679 | Arctic Peat Soil | MKNATHENKSLFSVFFKNLAKNFAALFESGNKKEFQRLKEFISS |
Ga0208357_11585712 | 3300025703 | Arctic Peat Soil | MKNETHENKSLFSVFFKNLAKNFAALFESGNKKEFQRLKEFITS |
Ga0209484_100875122 | 3300025829 | Arctic Peat Soil | LLVMKNQVYQKRSVFSLFFSQITKNFVALFESGNKKEFQRLKDFITS |
Ga0209483_10318241 | 3300025862 | Arctic Peat Soil | MKNATHENKSLFSVFFKNLAKNFAALFESGNKREFQRLKTFITS |
Ga0209585_100003033 | 3300025891 | Arctic Peat Soil | MKNQVYQKRSVFSLFFSQITKNFVALFESGNKKEFQRLKDFITS |
Ga0207688_108988992 | 3300025901 | Corn, Switchgrass And Miscanthus Rhizosphere | MKTQMTQKKTVLSVFFTALSKNFIALFESGDKKEFQRLKDFISS |
Ga0207647_100212622 | 3300025904 | Corn Rhizosphere | MKNNVYQKKSALSVFFSQLAKNFVALFESGNKREFQRLKDFITS |
Ga0207705_101960073 | 3300025909 | Corn Rhizosphere | MKNQVYQKKPVFTVFISNLSKNLVALFESPDKREFQR |
Ga0207705_102582762 | 3300025909 | Corn Rhizosphere | MKNQNYQKPSVLALFFNHVAKNFVALFESGNKREFQRLKDFITS |
Ga0207705_102672132 | 3300025909 | Corn Rhizosphere | MKNQVYQKKTAITVFFNSLSKNLVALFEAPDKREFQRLKDFISS |
Ga0207705_103056841 | 3300025909 | Corn Rhizosphere | MKNQVYQKKPVFTVFISNLSKNLAALFESPDKREFQRLKDFITS |
Ga0207707_113564012 | 3300025912 | Corn Rhizosphere | MKNPAYKRKSALSVFFSYLAKNFVALFESGNKREFQRLKDFITS |
Ga0207695_100114212 | 3300025913 | Corn Rhizosphere | MKNQVYQKKTAVSVFFHTLSKNFIALFESGNKKEFQRLKDFIAH |
Ga0207695_107756252 | 3300025913 | Corn Rhizosphere | MKNNVYQRKSAFSVFFSQLAKNFVALFESGNKREFQRLKDFITS |
Ga0207660_101317721 | 3300025917 | Corn Rhizosphere | QKKPVFTVFISNLSKNLVALFESPDKREFQRLKDFITS |
Ga0207657_100589901 | 3300025919 | Corn Rhizosphere | MKNQVYQKKPVFTVFISNLSKNLVALFESPDKREFQRLKDFITS |
Ga0207657_101152802 | 3300025919 | Corn Rhizosphere | MKNNAYESKSAFSVFLKNFTRNFVALFESGNKRDFQRLKDFITS |
Ga0207657_102027712 | 3300025919 | Corn Rhizosphere | MKKQNYQKPSVLALFFNHVAKNFVALFESGNKREFQRLKDFITS |
Ga0207657_111889202 | 3300025919 | Corn Rhizosphere | YQRKSVFSVFFSNLAKNFAALFESGNKREFQRLKDFITS |
Ga0207652_100860874 | 3300025921 | Corn Rhizosphere | MKNNAYESKSAFSVFLKNFGRNFVALFESGNKRDFQRLKDFITS |
Ga0207652_102500462 | 3300025921 | Corn Rhizosphere | MKNQVYQRKSVFSVFFSNLAKNFAALFESGNKREFQRLKDFITS |
Ga0207652_103455662 | 3300025921 | Corn Rhizosphere | NKYHYPLFKTKFMKNQVYQKKTAVSVFFHTLSKNFIALFESGNKKEFQRLKDFIAH |
Ga0207659_112393591 | 3300025926 | Miscanthus Rhizosphere | QKKTVLSVFFTALSKNFIALFESGDKKEFQRLKDFISS |
Ga0207644_107786431 | 3300025931 | Switchgrass Rhizosphere | MKNEVYQKKTVLSQFFSNLSKNFIALFETGNKKDFQRLKDFISS |
Ga0207639_113188051 | 3300026041 | Corn Rhizosphere | YQKKTVLSQFFSNLSKNFIALFETGNKKEFQRLKDFISS |
Ga0207639_118972101 | 3300026041 | Corn Rhizosphere | MRNQLYKRKSALSVFFSYLAKNFVALFESGNKREFQ |
Ga0207674_100640041 | 3300026116 | Corn Rhizosphere | MKNNAYESKSAFSVFLKNFARNFVALFESGNKRDF |
Ga0207698_100550711 | 3300026142 | Corn Rhizosphere | ILFLKTKFMKNQVYQKKTAVSVFFHTLSKNFIALFESGNKKEFQRLKDFIAH |
Ga0207698_120117551 | 3300026142 | Corn Rhizosphere | DAYESKSALTVFFKNVAKNFVALFESGNKREFQRLKDFITS |
Ga0207698_121376442 | 3300026142 | Corn Rhizosphere | MKNQVYQKKTAVSVFFHTLSKNFIALFESGNKKEFQRL |
Ga0209178_10001758 | 3300027725 | Agricultural Soil | MKHSAPHKKSLLTVFFSNLSKNFIALFESGNKRDFQKLKDFITS |
Ga0209073_101391191 | 3300027765 | Agricultural Soil | IVYLKIENVMKNHSYENKSAFSQFLKHVAKNFVALFESGNKREFQRLKDFITS |
Ga0268266_116515532 | 3300028379 | Switchgrass Rhizosphere | MKNQVYQKKTVLSLFLSNLSKNFIALFESGDKKEFQRLKDFISS |
Ga0311334_119732591 | 3300029987 | Fen | MKNQVYQKKTAFSVFFHTLSKNFVALFESGNKKEFQRL |
Ga0170820_164950311 | 3300031446 | Forest Soil | KNQDHQKKTVLSLFLSTLSKNLIALFESGEKKEFQRLKDFISS |
Ga0310811_107773021 | 3300033475 | Soil | MKNDAYESKSALTVFFKNVAKNFVALFESGNKREFQRLKDFITS |
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