Basic Information | |
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Family ID | F073988 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 120 |
Average Sequence Length | 45 residues |
Representative Sequence | METVLGLFGMALWIVAVIALAAGITYAVVRLTPEREDKKPETTEA |
Number of Associated Samples | 110 |
Number of Associated Scaffolds | 120 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 0.83 % |
% of genes near scaffold ends (potentially truncated) | 26.67 % |
% of genes from short scaffolds (< 2000 bps) | 84.17 % |
Associated GOLD sequencing projects | 104 |
AlphaFold2 3D model prediction | No |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (75.000 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (21.667 % of family members) |
Environment Ontology (ENVO) | Unclassified (36.667 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (45.833 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56. |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Transmembrane (alpha-helical) | Signal Peptide: | Yes | Secondary Structure distribution: | α-helix: 37.78% β-sheet: 4.44% Coil/Unstructured: 57.78% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Soil Polar Desert Sand Natural And Restored Wetlands Groundwater Sediment Soil Soil Terrestrial Soil Tropical Forest Soil Serpentine Soil Grasslands Soil Surface Soil Termite Nest Soil Soil Sugarcane Root And Bulk Soil Soil Corn, Switchgrass And Miscanthus Rhizosphere Hardwood Forest Soil Soil Rice Paddy Soil Soil Tropical Forest Soil Corn, Switchgrass And Miscanthus Rhizosphere Corn Rhizosphere Switchgrass Rhizosphere Soil Arabidopsis Rhizosphere Avena Fatua Rhizosphere Corn Rhizosphere Tabebuia Heterophylla Rhizosphere Switchgrass Rhizosphere Arabidopsis Thaliana Rhizosphere Miscanthus Rhizosphere Corn, Switchgrass And Miscanthus Rhizosphere Populus Rhizosphere Rhizosphere Switchgrass Rhizosphere Miscanthus Rhizosphere Corn Rhizosphere Corn Rhizosphere Rhizosphere Switchgrass Rhizosphere Switchgrass Rhizosphere Miscanthus Rhizosphere Corn Rhizosphere Avena Fatua Rhizosphere |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
JGI10216J12902_1022877761 | 3300000956 | Soil | YSTSDMETVLGLFGMALWIVSVIALAAGITYAVVRLTPEREEKNEATEG* |
C688J18823_100041115 | 3300001686 | Soil | MAIWIVSVIALAAGMTYAVVKLTPEKSEKPEEAPEA* |
C688J35102_1203590812 | 3300002568 | Soil | MSTVLGLFGMALWIVAVIALAAGMTYAVVKLTPEREDKKPETAETTEA* |
C688J35102_1204941072 | 3300002568 | Soil | MSTVLGLFGMVIWILSVIALAAGMTYAVVKLTPEKAEKPEEAPEEA* |
C688J35102_1209763896 | 3300002568 | Soil | MSTVLGLFGMAIWIVSVIALAAGMTYAVVKLTPEKSEKPEEAPEA* |
soilL1_100494102 | 3300003267 | Sugarcane Root And Bulk Soil | METVLGLFGMALWIVSVIALAAGITYAVVRLTPEREEKGEATEG* |
soilH1_100172221 | 3300003321 | Sugarcane Root And Bulk Soil | AASGYSTSDMETVLGLFGMALWIVSVIALAAGITYAVVRLTPEREEKGEATEG* |
Ga0055471_100037212 | 3300003987 | Natural And Restored Wetlands | MGTVLGLFGMALWIVSVIALAAGMTYAVVRLTPEREEKTTEASET* |
Ga0055472_100438462 | 3300003998 | Natural And Restored Wetlands | MDTVLGLFGMALWIVSVIALAAGITYAVVRLTPEREDKKPETTEA* |
Ga0062593_1010370752 | 3300004114 | Soil | GLFGMAIWILSVIALAAGITYAVVKLTPEKAEKPDEPAEA* |
Ga0062590_1019945132 | 3300004157 | Soil | LFGMALWIVAVIALAAGMTYAVVRLTPEREDKKPETSET* |
Ga0063356_1007922171 | 3300004463 | Arabidopsis Thaliana Rhizosphere | MTTVLGLFGMAIWILSVIALAAGITYAVVKLTPEKAEKPDEPAEA* |
Ga0062595_1018764722 | 3300004479 | Soil | METVLGLFGMALWIVAVIALAAGITYAVVRLTPEREDKKPETTEA* |
Ga0070676_101188962 | 3300005328 | Miscanthus Rhizosphere | METVLGLFGMVLWIVSVIALAAGITYAVVRLTPEREDKNPETTEA* |
Ga0066388_1013581842 | 3300005332 | Tropical Forest Soil | METVLGLFGMALWIVSVIALAAGITYAVVKLTPERQEKPPTTEA* |
Ga0066388_1040800832 | 3300005332 | Tropical Forest Soil | METVLGLFGVALWIVAVIALAAGITYAVVKITPEREDKQPETTEA* |
Ga0068869_1017481302 | 3300005334 | Miscanthus Rhizosphere | METVLGLFGMALWIVAVIALAAGITYAVVRLTPEREEKKPETTEA* |
Ga0070680_1006735522 | 3300005336 | Corn Rhizosphere | METVLGLFGMALWIVAVIALAAGMTYAVVKLTPEREDKKPETTET* |
Ga0070689_1001901652 | 3300005340 | Switchgrass Rhizosphere | METVLGLFGVALWIVAVIALAAGITYAVVRLTPEREDKKPETTEA* |
Ga0070691_101467252 | 3300005341 | Corn, Switchgrass And Miscanthus Rhizosphere | GYSTSDMETVLGLFGMVLWIVSVIALAAGITYAVVRLTPEREDKNPETTEA* |
Ga0070692_101946822 | 3300005345 | Corn, Switchgrass And Miscanthus Rhizosphere | METVLGLFGMALWIVSVIALAAGITYAVVRLTPEREDKNPETTEA* |
Ga0070669_1020314112 | 3300005353 | Switchgrass Rhizosphere | METVLGLFGMALWIVSVIALAAGITYAVVRLTPEREEKNEATGG* |
Ga0070694_1004544371 | 3300005444 | Corn, Switchgrass And Miscanthus Rhizosphere | METVLGLFGMALWIVSVIALAAGITYAVVRLTPEREEKKEATEG* |
Ga0073909_101285572 | 3300005526 | Surface Soil | METVLGLFGMALWIVAVIALAAGMTYAVVKLTPEREDKKPETSET* |
Ga0070684_1004856102 | 3300005535 | Corn Rhizosphere | METVLGLLGMALWIVSVIALAAGITYAVVRLTPEREEKSEATEG* |
Ga0066698_110576502 | 3300005558 | Soil | MTTVLGLFGMVIWIVSVIALAAGITYAVVRLTPEKAEKPEEPSEA* |
Ga0068866_105662002 | 3300005718 | Miscanthus Rhizosphere | SDMETVLGLFGMALWIVSVIALAAGITYAVVRLTPEREEKKEATEG* |
Ga0068860_1014881352 | 3300005843 | Switchgrass Rhizosphere | DMETVLGLFGMALWIVAVIALAAGITYAVVRLTPEREDKKPETTEA* |
Ga0068862_1004976072 | 3300005844 | Switchgrass Rhizosphere | ASGYSTSDMETVLGLFGMALWIVSVIALAAGITYAVVRLTPEREEKKEATEG* |
Ga0075288_10219932 | 3300005874 | Rice Paddy Soil | METVLGLFGMALWIVAVIALAAGMTYAVVKLTPEREDKKPETTEV* |
Ga0075292_10401412 | 3300005887 | Rice Paddy Soil | MGTVLGLFGMALWIVAVIALAAGMTYAVVKLTPEREEKTTEASET* |
Ga0081455_100180772 | 3300005937 | Tabebuia Heterophylla Rhizosphere | METVLGLFGMALWIVSVIALAAGITYAVVKLTPEREDKKPETNET* |
Ga0081455_104357642 | 3300005937 | Tabebuia Heterophylla Rhizosphere | METVFGLFGMALWIVSVIALAAGITYAVVRLTPEREDKKPETTEA* |
Ga0075432_100530172 | 3300006058 | Populus Rhizosphere | METVLGLFGMALWIVAVIALAAGMTYAVVRLTPEREDKKPETTET* |
Ga0082029_17854802 | 3300006169 | Termite Nest | METVLGLFGMALWIIAVIALAAGMTYAVVKLTPEREDKKPESTEA* |
Ga0075418_112279091 | 3300009100 | Populus Rhizosphere | METVLGLFGMALWIVSVIALAAGITYAVVRLTPEREEKNEATEG* |
Ga0105243_101896113 | 3300009148 | Miscanthus Rhizosphere | METVLGLFGMALWIVSVIALAAGITYAVVKLTPEREDKNPETTEA* |
Ga0105238_116384221 | 3300009551 | Corn Rhizosphere | SGYSTSDMETFLGLFGMALWIVSVIALAAGITYAVVRLTPEREDKNPETTEA* |
Ga0105249_103199921 | 3300009553 | Switchgrass Rhizosphere | VLGLFGMALWIVAVIALAAGITYAVVRLTPEREDKKPETTEA* |
Ga0126307_1000012148 | 3300009789 | Serpentine Soil | METVLGLFGMALWIVAVIALAAGMTYAVVRLTPEREDKKPETTEA* |
Ga0126313_104005132 | 3300009840 | Serpentine Soil | MDTVLGLFVMALWIVAVIALAAGVTYLVVKLSPGSDSKPKAET* |
Ga0126312_112567351 | 3300010041 | Serpentine Soil | METVLGLFGMALWIVAVIALAAGITYAVVRLTPEREDKPETTEA* |
Ga0126314_102891482 | 3300010042 | Serpentine Soil | METVLGLFGMALWIVAVIALAAGMTYAVVKLTPEREDKKPDTTEA* |
Ga0126310_106441702 | 3300010044 | Serpentine Soil | METVLGLFGMALWIVAVIALAAGMTYAVVKLTPEREDKKPETTEA* |
Ga0126319_11833012 | 3300010147 | Soil | MDTVLGLFGMVLWIVAVIALAAGITYAVVRLTPDREDKKPETTEA* |
Ga0134088_107228932 | 3300010304 | Grasslands Soil | AASGYSTFRMTTVLGLFGMVIWIVSVIALAAGITYAVVRLTPEKAEKPEEPSEA* |
Ga0126377_135740732 | 3300010362 | Tropical Forest Soil | METVLGLFGMALWIVSVIALAAGITYAVVKLTPEREDKKEATEG* |
Ga0134125_119618852 | 3300010371 | Terrestrial Soil | METVLGLFGMALWILSVIALAAGITYAVVRLTPEREDKKPETTEA* |
Ga0134126_125381762 | 3300010396 | Terrestrial Soil | METVLGLFGMALWILSVIALAAGITYAVVRLTPEREDKSEATEG* |
Ga0134124_126660421 | 3300010397 | Terrestrial Soil | METVLGLFGMALWIVSVIALAAGITYAVVRLTPEREEKKE |
Ga0134127_111766781 | 3300010399 | Terrestrial Soil | SGYSTSDMETVLGLFGMVLWIVSVIALAAGITYAVVRLTPEREDKNPETTEA* |
Ga0138513_1000024942 | 3300011000 | Soil | METVLGLFGMALWIVAVIALAAGMTYAVVRLTPEREDKKPETSET* |
Ga0136620_100018909 | 3300012186 | Polar Desert Sand | MDTVLGLLGIALFIVGVISLAAFITYAVVRLTPQRKRKAEPTETTG* |
Ga0150985_1005071121 | 3300012212 | Avena Fatua Rhizosphere | TVLGLFGMALWIVSVIALAAGMTYAVVKLTPEREDKRPDTTEA* |
Ga0150984_1044990952 | 3300012469 | Avena Fatua Rhizosphere | METVLGLFGMALWIVAVIALAAGMTYAVVRLTPEREDKNPDTTEA* |
Ga0157294_102602271 | 3300012892 | Soil | METVLGLFGMALWIVAVIALAAGITYAVVKLTPEREDKKPETTEA* |
Ga0157309_102480372 | 3300012895 | Soil | METVLGLLGMALWIVSVIALAAGITYAVVRLTPEREDKKPETTEA* |
Ga0157285_103531061 | 3300012897 | Soil | AASGYSTSDMETVLGLFGMALWIVAVIALAAGITYAVVRLTPEREDKKPETTEA* |
Ga0157288_102871063 | 3300012901 | Soil | FGMALWIVAVIALAAGITYAVVRLTPEREDKKPETTEA* |
Ga0157289_102406132 | 3300012903 | Soil | METVLGLFGMALWIVAVIALAAGITYAVVKLTPERAEKDEATEG* |
Ga0157308_102895161 | 3300012910 | Soil | SGYSTLRMTTVLGLFGMAIWILSVIALAAGITYAVVRLTPEKAEKPEEPAEA* |
Ga0157298_102015092 | 3300012913 | Soil | METVLGLIGMALWIVSVIALAAGITYAVVRLTPEREDKKPETTEA* |
Ga0157307_10793592 | 3300013096 | Soil | DMETVLGLFGMALWIVAVIALAAGMTYAVVRLTPEREDKKPETSET* |
Ga0157373_103467412 | 3300013100 | Corn Rhizosphere | METVLGLFGMALWILSVIALAAGITYAVVRLTPEREEKSEATEG* |
Ga0182008_100157614 | 3300014497 | Rhizosphere | MSTVLGLFGMVIWILSVIALAAGITYAVVKLTPEKAEKPEEAPEA* |
Ga0157379_100511332 | 3300014968 | Switchgrass Rhizosphere | METVLGLFGMALWIVAVIALAAGITYAVVRLTPEREDKNPETTEA* |
Ga0173483_104818312 | 3300015077 | Soil | MTTVLGLFGMAIWILSVIALAAGITYAVVRLTPEKAEKPEEPAEA* |
Ga0173480_107565712 | 3300015200 | Soil | METVLGLFGMALWIVSVIALAAGITYAVVRLTPEREEKSEATEG* |
Ga0132258_103599283 | 3300015371 | Arabidopsis Rhizosphere | METVLGLFGMVLWIVSVIALAAGITYAVVKLTPEREDKNPETTEA* |
Ga0132257_1008731982 | 3300015373 | Arabidopsis Rhizosphere | METVLGLFGMVLWIVSVIALAAGITYAVVKLTPEREDKNPQTTEA* |
Ga0136617_100538354 | 3300017789 | Polar Desert Sand | MDTVLGLLGIALFIVGVISLAAFITYAVVRLTPQRKRKAEPTETTG |
Ga0184608_100755992 | 3300018028 | Groundwater Sediment | METVLGLFGMALWIVAVIALAAGMTYAVVKRTPEREDKKPETTET |
Ga0184608_101279252 | 3300018028 | Groundwater Sediment | MTTVLGLCGMAIWIVSVIALAAGITYAVVRLTPERAEKPEAPEEA |
Ga0184621_101200151 | 3300018054 | Groundwater Sediment | MTTVLGLFGMAIWIVSVIALAAGITYAVVRLTPERAEKPEAPEEA |
Ga0184611_11285562 | 3300018067 | Groundwater Sediment | METVLGLFGMALWIVAVIALAAGMTYAVVRLTPEREDKKPETTET |
Ga0184635_100692433 | 3300018072 | Groundwater Sediment | METVLGLFGMALWIVAVIALAAGMTYAVVKLTPEREDKKPETTET |
Ga0184624_100470422 | 3300018073 | Groundwater Sediment | METVLGLFGMALWIVAVIALAAGMTYAVVRLTPEREDKKPETTEA |
Ga0184640_103049862 | 3300018074 | Groundwater Sediment | METVLGLFGMALWIVAVIALAAGMTYAVVRLTPERE |
Ga0190269_100810942 | 3300018465 | Soil | MDTVLGLFGMALWIVAVIALAAGMTYAVVRLTPEREDKKPETSET |
Ga0190270_100020189 | 3300018469 | Soil | MDTVLGLFGMALWIVAVIALAAGMTYAVVRLTPEREDKKPDTTEA |
Ga0173481_100071063 | 3300019356 | Soil | METVLGLFGMALWIVAVIALAAGMTYAVVRLTPEREDKKPETSET |
Ga0173481_106347352 | 3300019356 | Soil | METVLGLFGMALWIVSVIALAAGITYAVVRLTPEREDKNPETTEA |
Ga0173481_106849271 | 3300019356 | Soil | METVLGLFGMALWIVAVIALAAGMTYAVVRLTPEREDKEPDTTEA |
Ga0173482_101958742 | 3300019361 | Soil | METVLGLLGMALWIVSVIALAAGITYAVVRLTPEREEKSEATEG |
Ga0173482_103505452 | 3300019361 | Soil | MVVWIIGVIALAAGVTYAVVRLTPEKADKPEEAPET |
Ga0173479_100868112 | 3300019362 | Soil | METVLGLFGMALWIVAVIALAAGITYAVVKLTPEREDKKPETTEA |
Ga0190267_100172612 | 3300019767 | Soil | METVLGLFGMALWIVAVIALAAGITYAVVRLTPDREDKKPETTEA |
Ga0182009_104224882 | 3300021445 | Soil | MTTVLGILGMIVWIVAVIGLAAGITYAVVRLTPEKQEKPEEPAEA |
Ga0182009_104851022 | 3300021445 | Soil | MSTVLGLFGMVIWILSVIALAAGITYAVVKLTPEKAEKPEEAPEA |
Ga0247747_10388321 | 3300022737 | Soil | AIWILSVIALAAGITYAVVRLTPEKAEKPEEPAEA |
Ga0247799_10894392 | 3300023072 | Soil | MALWIVAVIALAAGMTYAVVRLTPEREDKKPETSET |
Ga0207656_102798703 | 3300025321 | Corn Rhizosphere | METVLGLFGMALWIVAVIALAAGITYAVVRLTPEREDKKPETTEA |
Ga0210114_10174732 | 3300025795 | Natural And Restored Wetlands | MGTVLGLFGMALWIVSVIALAAGMTYAVVRLTPEREEKTTEASET |
Ga0207653_103428251 | 3300025885 | Corn, Switchgrass And Miscanthus Rhizosphere | METVLGLFGMVLWIVSVIALAAGITYAVVRLTPEREDKNPET |
Ga0207642_103751362 | 3300025899 | Miscanthus Rhizosphere | METVLGLFGMALWIISVIALAAGITYAVVRLTPEREEKKEATEG |
Ga0207688_100076846 | 3300025901 | Corn, Switchgrass And Miscanthus Rhizosphere | METVLGLFGMVLWIVSVIALAAGITYAVVRLTPEREDKNPETTEA |
Ga0207645_106172522 | 3300025907 | Miscanthus Rhizosphere | METVLGLFGMALWIVSVIALAAGITYAVVRLTPEREEKKEATEG |
Ga0207643_100116563 | 3300025908 | Miscanthus Rhizosphere | METVLGLFGMALWIVAVIALAAGITYAVVRLTPEREEKKPETTEA |
Ga0207660_106133031 | 3300025917 | Corn Rhizosphere | MALWIVSVIALAAGITYAVVRLTPEREDKNPETTEA |
Ga0207652_102865762 | 3300025921 | Corn Rhizosphere | METVLGLFGMALWIVSVIALAAGITYAVVKLTPEREDKNPETTEA |
Ga0207701_116123572 | 3300025930 | Corn, Switchgrass And Miscanthus Rhizosphere | METVLGLFGVALWIVAVIALAAGITYAVVRLTPEREDKKPETTEA |
Ga0207690_106087052 | 3300025932 | Corn Rhizosphere | METVLGLFGMALWIVSVIALAAGITYAVVRLTPEREEKNEATGG |
Ga0207640_113683162 | 3300025981 | Corn Rhizosphere | GLFGVALWIVAVIALAAGITYAVVRLTPEREDKKPETTEA |
Ga0208415_10235542 | 3300025993 | Rice Paddy Soil | METVLGLFGMALWIVAVIALAAGMTYAVVKLTPEREDKKPETTEV |
Ga0207648_101483391 | 3300026089 | Miscanthus Rhizosphere | ASGYSTSDMETVLGLFGMALWIVSVIALAAGITYAVVKLTPEREDKNPETTEA |
Ga0247828_102635552 | 3300028587 | Soil | METVLGLFGMALWIISVIALAAGITYAVVRLTPEREDKNPETTEA |
Ga0307276_101990441 | 3300028705 | Soil | METVLGLFGMALWIVAVIALAAGMTYAVVKLTPEREDKNPDTTEA |
Ga0307295_100869162 | 3300028708 | Soil | MTTVLGLFGVVIWIVSVIALAAGITYAVVRLTPEKAEKPEAPEEA |
Ga0307301_101324101 | 3300028719 | Soil | SGYSTSDMETVLGLFGMALWIVAVIALAAGMTYAVVKLTPEREDKKPETTET |
Ga0307282_101318702 | 3300028784 | Soil | VLGLFGMAIWIVSVIALAAGITYAVVRLTPERAEKPEAPEEA |
Ga0307282_103911281 | 3300028784 | Soil | MTTVLGLFGMAIWIVSVIALAAGITYAVVRLTPER |
Ga0307299_100918141 | 3300028793 | Soil | MAIWIVSVIALAAGITYAVVRLTPERAEKPEAPEEA |
Ga0307314_100926592 | 3300028872 | Soil | METVLGLFGMAIWILSVIALAAGITYAVVRLTPEKAEKPDEPAEA |
Ga0307408_1000090925 | 3300031548 | Rhizosphere | METVLGLFGMALWIVAVIALAAGMTYAVVRLTPEREDKKPDTTEA |
Ga0307405_102616741 | 3300031731 | Rhizosphere | METVLGLFGMALWIVAVIALAAGMTYAVVRLTPEREDKKPET |
Ga0310892_102716472 | 3300031858 | Soil | METVLGLFGMVLWIVSVIALAAGITYAVVKLTPEREDKNPETTEA |
Ga0310893_102374652 | 3300031892 | Soil | METVLGLFGMVLWIVSVIALAAGITYAVVKITPEREDKNPETTEA |
Ga0308176_100268045 | 3300031996 | Soil | METVLGLFGMALWIVAVIALAAGMTYAVVKLTPEREDKKPDTTEA |
Ga0307470_108384012 | 3300032174 | Hardwood Forest Soil | METVLGLFGMALWIVSVIALAAGITYAVVRLTPEREEKKEATDG |
Ga0247829_105866662 | 3300033550 | Soil | STLDMETVLGLFGMALWIVSVIALAAGITYAVVRLTPEREEKKEATEG |
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