Metagenome / Metatranscriptome Family F073910

Overview

Basic Information

• Family ID: F073910
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 120
• Average Sequence Length: 53 residues
• Representative Sequence: GGNLLFNLKNGGMSVGKINPSVPKAYITLMNTYKTNIIKKKLKVPAKL
• Number of Associated Samples: 112
• Number of Associated Scaffolds: 120

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Bacteria
• % of genes with valid RBS motifs: 1.71 %
• % of genes near scaffold ends (potentially truncated): 95.00 %
• % of genes from short scaffolds (< 2000 bps): 90.00 %
• Associated GOLD sequencing projects: 105
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.41

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Bacteria (84.167 % of family members)
• NCBI Taxonomy ID: 2
• Taxonomy: All Organisms → cellular organisms → Bacteria

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (17.500 % of family members)
• Environment Ontology (ENVO): Unclassified (27.500 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline) (43.333 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 19.74%
  β-sheet: 0.00%
  Coil/Unstructured: 80.26%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 120 Family Scaffolds
PF00005	ABC_tran	47.50
PF02608	Bmp	40.83
PF02653	BPD_transp_2	1.67
PF01434	Peptidase_M41	0.83
PF01695	IstB_IS21	0.83
PF00308	Bac_DnaA	0.83
PF03575	Peptidase_S51	0.83

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 120 Family Scaffolds
COG1744	Lipoprotein Med, regulator of KinD/Spo0A, PBP1-ABC superfamily, includes NupN	Signal transduction mechanisms [T]	40.83
COG1484	DNA replication protein DnaC	Replication, recombination and repair [L]	1.67
COG0465	ATP-dependent Zn proteases	Posttranslational modification, protein turnover, chaperones [O]	0.83
COG0593	Chromosomal replication initiation ATPase DnaA	Replication, recombination and repair [L]	0.83

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	84.17 %
Unclassified	root	N/A	15.83 %

Level 2

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	84.17 %
Unclassified	root	N/A	15.83 %

Level 3

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	84.17 %
Unclassified	root	N/A	15.83 %

Level 4

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.83 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.83 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	50.00 %
Unclassified	root	N/A	15.83 %

Level 5

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	42.50 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.83 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1.67 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2.50 %
Unclassified	root	N/A	15.83 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.83 %

Level 6

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.83 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	30.00 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1.67 %
Rhodobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	0.83 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	7.50 %
Unclassified	root	N/A	15.83 %
unclassified Firmicutes sensu stricto	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → unclassified Firmicutes sensu stricto	2.50 %

Level 7

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.83 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1.67 %
Firmicutes bacterium ADurb.Bin506	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → unclassified Firmicutes sensu stricto → Firmicutes bacterium ADurb.Bin506	2.50 %
Roseobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae	0.83 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	7.50 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	0.83 %
Unclassified	root	N/A	15.83 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	26.67 %

Level 8

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.83 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	26.67 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1.67 %
Firmicutes bacterium ADurb.Bin506	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → unclassified Firmicutes sensu stricto → Firmicutes bacterium ADurb.Bin506	2.50 %
Oceanicola	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Oceanicola	0.83 %
Solirubrobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae	2.50 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.83 %
Unclassified	root	N/A	15.83 %

Level 9

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.83 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	26.67 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1.67 %
Firmicutes bacterium ADurb.Bin506	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → unclassified Firmicutes sensu stricto → Firmicutes bacterium ADurb.Bin506	2.50 %
Oceanicola granulosus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Oceanicola → Oceanicola granulosus	0.83 %
Solirubrobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	2.50 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.83 %
Unclassified	root	N/A	15.83 %

Level 10

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.83 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	26.67 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1.67 %
Firmicutes bacterium ADurb.Bin506	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → unclassified Firmicutes sensu stricto → Firmicutes bacterium ADurb.Bin506	2.50 %
Oceanicola granulosus HTCC2516	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Oceanicola → Oceanicola granulosus → Oceanicola granulosus HTCC2516	0.83 %
Solirubrobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	2.50 %
Streptomyces afghaniensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces afghaniensis	0.83 %
Unclassified	root	N/A	15.83 %

Level 11

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.83 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	26.67 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1.67 %
Firmicutes bacterium ADurb.Bin506	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → unclassified Firmicutes sensu stricto → Firmicutes bacterium ADurb.Bin506	2.50 %
Oceanicola granulosus HTCC2516	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Oceanicola → Oceanicola granulosus → Oceanicola granulosus HTCC2516	0.83 %
Solirubrobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	2.50 %
Streptomyces afghaniensis 772	strain	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces afghaniensis → Streptomyces afghaniensis 772	0.83 %
Unclassified	root	N/A	15.83 %

Associated Scaffolds

Scaffold	Taxonomy	Length
3300002568|C688J35102_120178102	Not Available	913
3300004006|Ga0055453_10174239	All Organisms → cellular organisms → Bacteria	667
3300004091|Ga0062387_100206375	All Organisms → cellular organisms → Bacteria	1191
3300004153|Ga0063455_100030697	All Organisms → cellular organisms → Bacteria	1611
3300004479|Ga0062595_101538562	All Organisms → cellular organisms → Bacteria	616
3300005336|Ga0070680_100478987	All Organisms → cellular organisms → Bacteria	1064
3300005436|Ga0070713_100168895	All Organisms → cellular organisms → Bacteria	1958
3300005439|Ga0070711_100680881	All Organisms → cellular organisms → Bacteria	864
3300005454|Ga0066687_10111212	All Organisms → cellular organisms → Bacteria	1397
3300005471|Ga0070698_101562912	All Organisms → cellular organisms → Bacteria	611

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	75.83%
Host-Associated	Host-Associated	24.17%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	6.67%
Plants	Host-Associated → Plants	24.17%
Terrestrial	Environmental → Terrestrial	69.17%

Category

Habitat	Taxonomy	Distribution
Agricultural Field	Environmental → Terrestrial → Agricultural Field	0.83%
Freshwater	Environmental → Aquatic → Freshwater	1.67%
Marine	Environmental → Aquatic → Marine	0.83%
Rhizoplane	Host-Associated → Plants → Rhizoplane	10.00%
Rhizosphere	Host-Associated → Plants → Rhizosphere	14.17%
Sediment	Environmental → Aquatic → Sediment	4.17%
Soil	Environmental → Terrestrial → Soil	68.33%

Type

Habitat	Taxonomy	Distribution
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	7.50%
Lake	Environmental → Aquatic → Freshwater → Lake	0.83%
Loam	Environmental → Terrestrial → Soil → Loam	11.67%
Soil	Host-Associated → Plants → Rhizosphere → Soil	7.50%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	52.50%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	6.67%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.17%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.50%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	0.83%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	4.17%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.83%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.83%

Subtype

Habitat	Taxonomy	Distribution
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.50%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.83%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	9.17%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.83%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	5.83%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.83%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.83%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.67%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.83%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.83%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	0.83%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	36.67%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	7.50%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	7.50%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	6.67%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.17%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.33%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.50%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.83%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	0.83%

Habitat

Habitat	Taxonomy	Distribution
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.50%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	1.67%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.83%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.83%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	2.50%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.67%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.67%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.67%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	7.50%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	0.83%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.83%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.83%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	5.83%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.83%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.67%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.83%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.67%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	3.33%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.50%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.83%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	1.67%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	0.83%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.83%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	2.50%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.83%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	0.83%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	0.83%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	2.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	17.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	5.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.33%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.67%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.83%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.83%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	0.83%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.67%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.83%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.83%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.67%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.83%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.67%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	3.33%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.67%

Associated Samples

Taxon OID	Sample Name	Habitat Type
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental
3300004006	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Goodyear_PhragA_D2	Environmental
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental
3300004153	Grasslands soil microbial communities from Hopland, California, USA (version 2)	Environmental
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental
3300005454	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136	Environmental
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
C688J35102_1201781021	3300002568	Soil	EKAGKFKGGGDLLFNLKNGGMSVGKINPSVPKAYIKLMNSYKARIIAGKLKVPASL*
Ga0055453_101742391	3300004006	Natural And Restored Wetlands	GNLLFNLKNGGMSVGKINPTVPKAYIKLMNTYKTNIIKKKLKVPTKL*
Ga0062387_1002063751	3300004091	Bog Forest Soil	DLVFNLKNHGVGVGKISPDVPASWINLMNSYRAKIVAGTLMIPTALP*
Ga0063455_1000306973	3300004153	Soil	KNGGFRGGGNLLFNLKNGGMGVGKINPAVPKKFITAMNKIKVKIIKGQLKVKTKV*
Ga0062595_1015385621	3300004479	Soil	NLLFNLKNKGMGVGKMNPAVPKAYIKLMNTYKTKIIKKKLKVPTKLS*
Ga0070680_1004789872	3300005336	Corn Rhizosphere	AAAGQFKGGSDLLLNLKNNGVGVGKVSPSVPSSWIKLMNSYRAKIIAGKLKPPAALGK*
Ga0070713_1001688953	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	KGFKGGGNLLFNLKNGGMSVGKINPSVPKAYITLMNTYKTNIIKKKLHVPTKLS*
Ga0070711_1006808812	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	SGVKRVDNGVYQAIQKAQSGKGFKGGGNLLFNLKNGGMSVGKINPTVPKAYIKLMNAYKTKIIKKKLTVPTKL*
Ga0066687_101112121	3300005454	Soil	LFNLKNGGMSVGKINPSVPKKFITAMNKIKVKIIKKQLRVPAKL*
Ga0070698_1015629121	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	AIQQASAGQFKGGSDLVFNLKNNGMGVGRINPSVPKAWITLMNGYKAKIIAGTLKVPSAL
Ga0070741_107995561	3300005529	Surface Soil	KQGKWNGGHDLVFDLKNGGMGLGKINPAVPKADIALMNQYKAKIIAGKLKVPTTLAP*
Ga0070664_1008830521	3300005564	Corn Rhizosphere	GVKRVDNGVYQAIQKTQAKKGFKGGGNLLFNLKNGGMSVGKINPSVPKAYITLMNTYKTNIIKKKLHVPTKLS*
Ga0066703_108647432	3300005568	Soil	DLLFNLKNGGMSVGKINPAVPKAFIDEMNMYKQQIINGTLKVPSAL*
Ga0066702_105349262	3300005575	Soil	SAAAGQFKGGTDLVFNLKNHGVGVGRISPVVPASWIKLMNSYRTKIVAGTLKVPTGL*
Ga0066702_108471102	3300005575	Soil	GQFKGGTDLVFNLKNHGVGVGKINPVVPASWIKLMNQYRSKIVAGTLKVPSALG*
Ga0068859_1016466652	3300005617	Switchgrass Rhizosphere	QFTLKNGGMGIGKINPTVPKKFITAMNKIKAKIILGKLKIPTKLS*
Ga0066903_1000958585	3300005764	Tropical Forest Soil	VQDGKWNGGHDLVFNLENGGMGLGRINPAVPPSDIRLMSRYKAEIIAGKLKVPSTL*
Ga0068870_107426562	3300005840	Miscanthus Rhizosphere	FNLKNGGMSVGKINPSVPKAYITLMNTYKTNIIKKKLHVPTKLS*
Ga0075269_100313681	3300005905	Rice Paddy Soil	SGHFKGGQNLVFDLKNQGMGIGKINPAVPKSWITLMNNYKAQIISGKLKVPTTLG*
Ga0070716_1010438541	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	GVGVGKISPKVPKSWITLMKSYKTKIIKGKLKPPAVLH*
Ga0075021_104814612	3300006354	Watersheds	GIFQAVQQAATGKFLGGSDLLFNLKNGGMSVGKINPSVPPAYITLMNSYKAKIIAGTLKVPTAL*
Ga0074047_118876202	3300006576	Soil	GGKNVLYNLANGGMSVGKINPTVPKLFIKRMNNLKKLIIKHKVKPPKTL*
Ga0074060_116326761	3300006604	Soil	GGGNLLFNLKNGGMSVGKINPTVPKAYIKLMNTYKTNIIKHKLKVPAKL*
Ga0066653_101935951	3300006791	Soil	KGGSDLNFNLKNDGMSVGKINPAVPQKFIDEMNDYKKQIIRGRLKVPSAL*
Ga0066659_113325002	3300006797	Soil	YDAIQQAAAGQFKGGTDLLFNLKNNGMGVGRINPSVPAAWVTLMNNYKKRIIAGTFKVPSALK*
Ga0075425_1001088521	3300006854	Populus Rhizosphere	GFKGGGNLLFNLKNGGMSVGKINPSVPKAYITLMNTYKTNIIKKKLHVPTKLS*
Ga0068865_1019336172	3300006881	Miscanthus Rhizosphere	GGNLLFNLKNGGMSVGKINPTVPKAYIKLMNTYKTNIIKHKLKVPAKL*
Ga0099829_106580981	3300009038	Vadose Zone Soil	KFAGGTNLLFNLKNNGMSVGRINPSVPKAFVATMNKYKAQIIAGTLKVPSAL*
Ga0105241_122427692	3300009174	Corn Rhizosphere	MSDWEDIEAIKQVKAGQFNGGHDLLFNLKNGGMGVGKINPSVPKSDIALMNSYKAKIIAGTLKLPSSLG*
Ga0126313_114245941	3300009840	Serpentine Soil	GVYQAINKAKNGGFKRGGNLLFNLKNKGMGVGKMNPAVPKAYIKLMNTYKTRIIKKQLKVPSKL*
Ga0126305_110597131	3300010036	Serpentine Soil	NLLFNLKNKGMGVGKMNPAVPKAYIKLMNTYKTRIIKKQLKVPTKL*
Ga0126312_101406241	3300010041	Serpentine Soil	GGFKRGGNLLFNLKNKGMGVGKMNPAVPKAYITLMNTYKTKIIKKQLKVPTKL*
Ga0134070_104254931	3300010301	Grasslands Soil	DVGVYSAAKQVKVGKFNGGADLNFTLKNGGMGVGKINPAVPKSDIALMNSYKAKIIAGTLKVPAALS*
Ga0134080_100997581	3300010333	Grasslands Soil	DLGIIKIAQAVKLGKFKANTDLVFTLKNGGMSVGRINPAVPKAYIKIMNAYKARIIAGKLKVPTTLS*
Ga0134066_101598462	3300010364	Grasslands Soil	VYQAVAQVKAGHFKGGTNLLFNLKNGGMSVGKINPSVPKKFITAMNKIKVKIIKKKLKVPAKL*
Ga0136449_1013816221	3300010379	Peatlands Soil	QFKGGQDLVFNLKNHGVGVGKISPDVPASWINLMNQYRARIVAGTLKVPTALP*
Ga0134122_114902461	3300010400	Terrestrial Soil	NLLFNLKNGGMSVGKINPTVPKAYIKLMNTYKTNIIKHKLKVPAKL*
Ga0138505_1000100692	3300010999	Soil	FKRGGNLLFNLKNKGMGVGKVHPAVPKAYITLMNSYKTKIINKKLKVPTKL*
Ga0137388_111939553	3300012189	Vadose Zone Soil	FQAAQQEQQGRFAGATDLLFNLKNGGMSVGRINPSVPASFVKLMNTYKAQIIAGSLQVPTAL*
Ga0137381_113509962	3300012207	Vadose Zone Soil	FKGGADLNFNLKNDGKGIGKINPTVPKAYIALMNSYKKRIIAGTLKVPAALK*
Ga0137378_112249121	3300012210	Vadose Zone Soil	KFAGGSDLVFNLKNGGMSVGRINPSVPAAYVKLMKSYKARIIAGTLKVPAAL*
Ga0150984_1131897882	3300012469	Avena Fatua Rhizosphere	AGQFKGGHDLVFNLKNGGMGVGKINPAVPASDIQLMNSYRSKIIAGTLKIPTSIS*
Ga0157316_10385372	3300012510	Arabidopsis Rhizosphere	GVYQAIQKTQAKKGFKGGGNLLFNLKNGGMSVGKINPSVPKAYITLMNTYKTNIIKKKLHVPTKLS*
Ga0157332_10058192	3300012511	Soil	MSVGKINPAVPKKFITAMNKIKTRIIKGKLKVPTKLT*
Ga0126375_113463102	3300012948	Tropical Forest Soil	LLFNLKNNGMSVGKINPAVPKAYIDEMNKYKQEIIAGTLHVPSAL*
Ga0126369_116445652	3300012971	Tropical Forest Soil	VGKINPAVPKAYITLMNTYKTNIIKKKLHVPTKLS*
Ga0134110_105596841	3300012975	Grasslands Soil	KFKANTDLVFTLKNGGMSVGKINPAVPKAYIKIMNAYKARIIAGKLKVPTTLS*
Ga0134076_105129092	3300012976	Grasslands Soil	AGQFKGGQDLVFNLKNHGMGVGKISPVVPASWIKLMNQYRANIIAGTLKVPASLG*
Ga0164309_107414752	3300012984	Soil	GVFSVAQQELQGKFRGGTDLNFNLKNGGMGIGKINPSVPKAYITLMNTYKTNIIKKKLHVPTKLS*
Ga0164304_102324792	3300012986	Soil	LLFNLKNGGMSVGKINPTVPKAYIKLMNTYKTNIIKHKLKVPAKL*
Ga0164306_116123682	3300012988	Soil	KGKFKGGKNLKFNLKNNGIGVGKISPTVPKSWITLMNTYKTKIIKKKLKLPADLP*
Ga0157378_115909842	3300013297	Miscanthus Rhizosphere	LKNGGMSVGKINPTVPKAYIKLMNTYKTNIIKKKLKVPAKL*
Ga0157375_103320201	3300013308	Miscanthus Rhizosphere	QAVDKAKNGGFKGGGNLLFNLKNGGMSVGKINPTVPKAYIKLMNTYKTNIIKHKLKVPAKL*
Ga0157375_103681153	3300013308	Miscanthus Rhizosphere	VDNGVFQAVDKAKNGGFKGGGNLLFNLKNGGMSVGKINPTVPKAYIKLMNAYKTKIIKKKLKVPTKL*
Ga0120109_10595741	3300014052	Permafrost	MHLPVNPPVAPMLAKAVKDGTFKGNTDLLFTLANGGMSVGKINPSVPKSDIATMNKYKADIISGKLVVPATL*
Ga0182021_123452701	3300014502	Fen	KFQGGSDLVFDLKNGGMGVGKINPSVPASWVALMNSYKAKIIAGTFKVPTAIG*
Ga0157377_112156401	3300014745	Miscanthus Rhizosphere	KNGGFKGGGNLLFNLKNGGMSVGKINPTVPKAYIKLMNTYKTNIIKKKLKVPAKL*
Ga0167642_10448472	3300015160	Glacier Forefield Soil	NGGIGVGKISPTVPKSWIRLMNSYKTKIIKGKLKLPADLP*
Ga0134085_103306881	3300015359	Grasslands Soil	AVKQVKDNKFKSGDLLFNLKNKGMDVGKINPSVPKAFINLMNSYKTRIINGSLKVPTGL*
Ga0132256_1002521651	3300015372	Arabidopsis Rhizosphere	AKKGFKGGGNLLFNLKNGGMSVGKINPSVPKAYITLMNTYKTNIIKKKLHVPTKLS*
Ga0132256_1003415423	3300015372	Arabidopsis Rhizosphere	LKNGGMSVGKINPAVPKAYIKLMNSYKTKIIKKKLKVPTKL*
Ga0132257_1037567802	3300015373	Arabidopsis Rhizosphere	ATQEKAGKFKGGTDVNFNLKNGGIGLGKISPAVPKASIAKANQYKALIIAGKLEVPTSL*
Ga0132255_1012237181	3300015374	Arabidopsis Rhizosphere	NGGMSVGKINPTVPKAYIKLMNTYKTNIIKKKLKVPAKL*
Ga0132255_1058802931	3300015374	Arabidopsis Rhizosphere	IEKAKNGGFKRGGNLLFNLKNKGMGVGKINPAVPKAYIKLMNQYKARIIAKKLKVPTKL*
Ga0134074_12037272	3300017657	Grasslands Soil	QFTLANHGMSVGKINPAVPKKFITAMNKIKTRIIKGKLKVPTKLT
Ga0187766_111932042	3300018058	Tropical Peatland	AGKFKGGQDLVFDLKNGGMGVGKISPDVPASWIKLMNQYRARIVAGTLKVPTALP
Ga0187773_101114782	3300018064	Tropical Peatland	FQAAAQEQQGKFAAGSDLVFNLKNGGMDVGKINPSVPKSWIALMNSYKAKIIAGTLKVPAAL
Ga0184618_102842692	3300018071	Groundwater Sediment	FKGGSDLLFNLKNKGMGVGRINPAVPASFKALMNSYKAKIIKGTLKVPAAL
Ga0184609_105095132	3300018076	Groundwater Sediment	GNLLFNLKNGGMSVGKINPAVPKKFITAMNAVKVKIIKHKLKVPTKL
Ga0066669_112223731	3300018482	Grasslands Soil	NGWFKCGGKLPFNLKNGGMSVGTLTPTVPKAYIKRMNSYKTKIIKKQLKVPAKL
Ga0173481_104230382	3300019356	Soil	GNLLFNLKNKGMGVGKINPAVPKAYVTLMNSYKTKIIKKKLKVPTKLS
Ga0173482_105698841	3300019361	Soil	KNGGMSVGKINPSVPKAYITLMNTYKTNIIKGKLHVPAKIK
Ga0193705_10075411	3300019869	Soil	GVYQAVQKVQNGKFVGGGNLLFNLKNGGMSVGKINPAVPKRFITGMNAVKAKIIKKQLKVPTKL
Ga0193705_10082363	3300019869	Soil	NGGNLLFNLKNGGMSVGKINPAVPKKFITAMNAVKVKIIKHKLKVPTKL
Ga0193730_11045431	3300020002	Soil	GVKRVDNGVFQAIDKAKNGGFKGGGNLLFNLKNGGMSVGKINPSVPKAYIKLMNTYKTNIIKHKLKVPAKL
Ga0193730_11887601	3300020002	Soil	NLLFNLKNGGMSVGKINPAVPKKFITAMNAVKVKIIKHKLKVPTKL
Ga0193699_102250661	3300021363	Soil	NGGMSVGKINPTVPKAYIKLMNTYKTNIIKHKLKVPAKL
Ga0222622_108310711	3300022756	Groundwater Sediment	KNGGMSVGKINPTVPKAYITLMNSYKTKIIKHKLKVPAKL
Ga0247672_10108271	3300024187	Soil	QAIQKTQAKKGFKGGGNLLFNLKNGGMSVGKINPSVPKAYITLMNTYKTNIIKKKLHVPTKLS
Ga0247668_10090991	3300024331	Soil	GGNLLFNLKNGGMSVGKINPSVPKAYITLMNTYKTNIIKKKLKVPAKL
Ga0207692_101715901	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	GMSVGKINPSVPKAYITLMNTYKTNIIKKKLHVPTKLS
Ga0207643_102487931	3300025908	Miscanthus Rhizosphere	FNLKNGGMSVGKINPSVPKAYITLMNTYKTNIIKKKLHVPTKLS
Ga0207693_106306871	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	AKKGFKGGGNLLFNLKNGGMSVGKINPSVPKAYITLMNTYKTNIIKKKLHVPTKLS
Ga0207663_102552232	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	KGFKGGGNLLFNLKNGGMSVGKINPSVPKAYITLMNTYKTNIIKKKLHVPTKLS
Ga0207660_100408801	3300025917	Corn Rhizosphere	GVFQAIDKAKNGGFKPGGNLLFNLKNGGMSVGKINPTVPKAYIKLMNTYKTNIIKKKLKVPAKL
Ga0207646_115203912	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	HDLQFTLKNGGMSVGKINPSVPKRFITAMNKIKTRIIKGKLKVPIKLT
Ga0207694_111353971	3300025924	Corn Rhizosphere	LLFNLKNGGMSVGKINPTVPKAYIKLMNTYKTNIIKHKLKVPAKL
Ga0207700_104266782	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	NGVGVGKISPKVPKSWITLMQSYKTKIIKGKLKPPTVVH
Ga0207679_118399262	3300025945	Corn Rhizosphere	GKFQGGSDLKLNLKNNGVGVGKIHPSVPASWIKLMNSYRAKIIAGTLKPPASLGK
Ga0207640_117626391	3300025981	Corn Rhizosphere	KGGSDLNFDLKNDGMSVGKINPAVPQDFIDEMNDYKKQIIRGRLKVPSAL
Ga0207658_100249301	3300025986	Switchgrass Rhizosphere	GVCQAIAQEKAGKFAGGSDLVFNLKNGGMGVGKISPSVPKAFVTLMNGYKAKIIAGTLKVPASL
Ga0207703_109136271	3300026035	Switchgrass Rhizosphere	QAIAQEKAGKFAGGSDLVFNLKNGGMGVGKISPSVPKAFVTLMNGYKAKIIAGTLKVPAS
Ga0207702_108270352	3300026078	Corn Rhizosphere	FQGGSDLLFNLKNNGMSVGKINPAVPKAYIDEMNKYKQQIISGQLKVPAAL
Ga0207702_116966702	3300026078	Corn Rhizosphere	ELAGKFKGGTDLNFNLKNGGIGIGKINPSVPKAFITLMNSYKAKIIAGKLKVPTAL
Ga0209068_107981541	3300027894	Watersheds	QNAVTGHWKGGKDLLFNLKNNGVGVGKISPAVQKAWITLMNSYKAKIIAGTLKPPAACSGGC
Ga0247684_10115541	3300028138	Soil	SVGKINPSVPKAYITLMNTYKTNIIKKKLHVPTKLS
Ga0247663_10085571	3300028145	Soil	GGNLLFNLKNGGMSVGKINPTVPKAYIKLMNTYKTNIIKKKLHVPTKLS
Ga0307322_101098551	3300028710	Soil	GNLLFNLKNGGMSVGKINPAVPKRFITGMNAVKAKIIKKQLKVPTKL
Ga0307309_101182941	3300028714	Soil	VKRVDNGVFQAIQKAKTGHFKNGGNLLFNLKNGGMSVGKINPTVPKSYIKLMNTYKTNIIKKKLKVPAKL
Ga0307311_102800532	3300028716	Soil	LLFNLKNGGMSVGKINPAVPKRFITGMNAVKAKIIKKQLKVPTKL
Ga0307316_100728801	3300028755	Soil	EKAGKFKAGGDLLFNLKNGGMSVGKINPSVPKAYIKLMNTYKARIIAGKLKVPAAL
Ga0307316_101204481	3300028755	Soil	VDNGVFQAIDKAKNGGFKGGGNLLFNLKNGGMSVGKINPTVPKSYIKLMNTYKTNIIKKKLKVPAKL
Ga0307280_100298933	3300028768	Soil	MSVGKINPTVPKAYIKLMNTYKTNIIKKKLKVPAKL
Ga0307287_104228291	3300028796	Soil	NGKFLAGGNLLFNLKNGGMSVGKINPAVPKRFITGMNAVKAKIIKKQLKVPTKL
Ga0265338_101488052	3300028800	Rhizosphere	VDTGVYDAIQQAQAGQFKGGQDLVFDLKNHGMGIGKINPVVPASWLKLMNSYRARIIAGTLKVPTGL
Ga0307296_104765721	3300028819	Soil	SDLLFNLKNNGMSVGKINPAVPKAFITEMNGYKQKIIAGTLKVPTAL
Ga0307310_100434911	3300028824	Soil	RVDNGVFQAIDKAKNGGFKGGGNLLFNLKNGGMSVGKINPTVPKSYIKLMNTYKTNIIKKKLKVPAKL
Ga0307499_101014951	3300031184	Soil	NLKNGGMSVGKINPTVPKAYIKLMNTYKTNIIKHKLKVPAKL
Ga0170824_1118638642	3300031231	Forest Soil	FKGGTDLNFNLKNGGMGLGKISPTVPAGDIALMNSYKKRIIAGTLKVPTAIS
Ga0265316_100286455	3300031344	Rhizosphere	DTGVYDAIQQAQAGQFKGGQDLVFDLKNHGMGIGRINPVVPASWIKLMNQYRARIIAGTLKVPTGL
Ga0265314_101627661	3300031711	Rhizosphere	IQQAEAGQFKGGQDLVFDLKNHGMGIGKINPVVPASWLKLMNSYRARIIAGTLKVPTGL
Ga0307468_1012431112	3300031740	Hardwood Forest Soil	LLFNLKNKGMGVGKINPAVPKAYIKLMNQYKTKIINKKLKVPTKL
Ga0307475_101907192	3300031754	Hardwood Forest Soil	GQDLVFDLKNHGMGVGKISPVVPASWIKLMNSYRSQIVAGTLKVPTALG
Ga0310904_111589601	3300031854	Soil	KAKNGGFKRGGNLLFNLKNGGMGVGKINPAVPKAYIKLMNQYKTKIINKKLKVPTKL
Ga0310893_102640361	3300031892	Soil	LKNGGMSVGKINPSVPKAYITLMNTYKTNIIKKKLHVPTKLS
Ga0310900_114188991	3300031908	Soil	SGVKRVDNGVYQAIQKTQAKKGFKGGGNLLFNLKNGGMSVGKINPSVPKAYITLMNTYKTNIIKKKLHVPTKLS
Ga0307416_1008040432	3300032002	Rhizosphere	QAINKAKNGGFKRGGNLLFNLKNKGMGVGKMNPAVPKAYITLMNTYKTRIIRKQLKVPTK
Ga0311301_110215301	3300032160	Peatlands Soil	QFKGGQDLVFNLKNHGVGVGKISPDVPASWINLMNQYRARIVAGTLKVPTALP
Ga0315271_100205631	3300032256	Sediment	VGGADLLFNLKNGGMSVGKINPAVSKAAIATMNKYKARIIAGTLKVPTGL
Ga0335080_111480791	3300032828	Soil	QAGQFQGGSDLLFNLKNHGVGVGKISPNVPASWIKLMNQYRARIVAGTLKVPSSLG