Metagenome / Metatranscriptome Family F073621

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F073621
Family Type	Metagenome / Metatranscriptome
Number of Sequences	120
Average Sequence Length	49 residues
Representative Sequence	MEKTAEQVYTDLLRQLASPSASQPGVLADLFRDVERMHSMGHITDWQ
Number of Associated Samples	91
Number of Associated Scaffolds	120

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	89.92 %
% of genes near scaffold ends (potentially truncated)	95.00 %
% of genes from short scaffolds (< 2000 bps)	91.67 %
Associated GOLD sequencing projects	84
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.65

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (54.167 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere (11.667 % of family members)
Environment Ontology (ENVO)	Unclassified (61.667 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (76.667 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 42.67% β-sheet: 0.00% Coil/Unstructured: 57.33%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.65
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.65
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 120 Family Scaffolds
PF13417	GST_N_3	15.83
PF13410	GST_C_2	10.00
PF00043	GST_C	4.17
PF03401	TctC	2.50
PF07589	PEP-CTERM	1.67
PF13193	AMP-binding_C	1.67
PF02371	Transposase_20	1.67
PF13586	DDE_Tnp_1_2	1.67
PF00892	EamA	1.67
PF01019	G_glu_transpept	1.67
PF00795	CN_hydrolase	1.67
PF13561	adh_short_C2	0.83
PF04392	ABC_sub_bind	0.83
PF01436	NHL	0.83
PF01041	DegT_DnrJ_EryC1	0.83
PF02540	NAD_synthase	0.83
PF06537	DHOR	0.83
PF03992	ABM	0.83
PF12244	DUF3606	0.83

COG ID	Name	Functional Category	% Frequency in 120 Family Scaffolds
COG0435	Glutathionyl-hydroquinone reductase	Energy production and conversion [C]	4.17
COG0625	Glutathione S-transferase	Posttranslational modification, protein turnover, chaperones [O]	4.17
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	2.50
COG0405	Gamma-glutamyltranspeptidase	Amino acid transport and metabolism [E]	1.67
COG3547	Transposase	Mobilome: prophages, transposons [X]	1.67
COG0171	NH3-dependent NAD+ synthetase	Coenzyme transport and metabolism [H]	0.83
COG0399	dTDP-4-amino-4,6-dideoxygalactose transaminase	Cell wall/membrane/envelope biogenesis [M]	0.83
COG0436	Aspartate/methionine/tyrosine aminotransferase	Amino acid transport and metabolism [E]	0.83
COG0520	Selenocysteine lyase/Cysteine desulfurase	Amino acid transport and metabolism [E]	0.83
COG0626	Cystathionine beta-lyase/cystathionine gamma-synthase	Amino acid transport and metabolism [E]	0.83
COG1104	Cysteine desulfurase/Cysteine sulfinate desulfinase IscS or related enzyme, NifS family	Amino acid transport and metabolism [E]	0.83
COG2873	O-acetylhomoserine/O-acetylserine sulfhydrylase, pyridoxal phosphate-dependent	Amino acid transport and metabolism [E]	0.83
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.83
COG3488	Uncharacterized conserved protein with two CxxC motifs, DUF1111 family	General function prediction only [R]	0.83

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	54.17 %
Unclassified	root	N/A	45.83 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	54.17 %
Unclassified	root	N/A	45.83 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	54.17 %
Unclassified	root	N/A	45.83 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	48.33 %
Unclassified	root	N/A	45.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.83 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	25.83 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.67 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.83 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	25.83 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.83 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.83 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	20.83 %
Burkholderiales genera incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis	1.67 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.83 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.83 %
Variovorax	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax	12.50 %
Rhizobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Rhizobacter	0.83 %
unclassified Comamonadaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → unclassified Comamonadaceae	0.83 %
Sorangiineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae	0.83 %
Leptothrix	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Leptothrix	0.83 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.83 %
unclassified Variovorax	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax → unclassified Variovorax	10.83 %
Comamonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → unclassified Comamonadaceae → Comamonadaceae bacterium	0.83 %
Leptothrix mobilis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Leptothrix → Leptothrix mobilis	0.83 %
Polyangiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Polyangiaceae	0.83 %
Rhizobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Rhizobacter	0.83 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.83 %
Variovorax sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax → unclassified Variovorax → Variovorax sp.	9.17 %
Variovorax sp. WDL1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax → unclassified Variovorax → Variovorax sp. WDL1	1.67 %
Sorangium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Polyangiaceae → Sorangium	0.83 %
Comamonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → unclassified Comamonadaceae → Comamonadaceae bacterium	0.83 %
Leptothrix mobilis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Leptothrix → Leptothrix mobilis	0.83 %
Rhizobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Rhizobacter	0.83 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.83 %
Variovorax sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax → unclassified Variovorax → Variovorax sp.	9.17 %
Variovorax sp. WDL1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax → unclassified Variovorax → Variovorax sp. WDL1	1.67 %
Sorangium cellulosum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Polyangiaceae → Sorangium → Sorangium cellulosum	0.83 %
Comamonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → unclassified Comamonadaceae → Comamonadaceae bacterium	0.83 %
Leptothrix mobilis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Leptothrix → Leptothrix mobilis	0.83 %
Rhizobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Rhizobacter	0.83 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.83 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004156\|Ga0062589_101815160	Not Available	612	Open in IMG/M
3300005290\|Ga0065712_10257387	Not Available	928	Open in IMG/M
3300005328\|Ga0070676_10293810	Not Available	1099	Open in IMG/M
3300005329\|Ga0070683_102028666	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	553	Open in IMG/M
3300005330\|Ga0070690_101595431	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	529	Open in IMG/M
3300005331\|Ga0070670_100079746	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	2814	Open in IMG/M
3300005331\|Ga0070670_101398011	All Organisms → cellular organisms → Bacteria → Proteobacteria	642	Open in IMG/M
3300005333\|Ga0070677_10139535	Not Available	1116	Open in IMG/M
3300005335\|Ga0070666_10650584	All Organisms → cellular organisms → Bacteria → Proteobacteria	771	Open in IMG/M
3300005344\|Ga0070661_100422735	Not Available	1057	Open in IMG/M
3300005345\|Ga0070692_10206458	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax → unclassified Variovorax → Variovorax sp.	1154	Open in IMG/M
3300005345\|Ga0070692_10437913	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax → unclassified Variovorax → Variovorax sp.	834	Open in IMG/M
3300005354\|Ga0070675_100164307	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	1911	Open in IMG/M
3300005354\|Ga0070675_100297831	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1420	Open in IMG/M
3300005364\|Ga0070673_100859708	Not Available	840	Open in IMG/M
3300005366\|Ga0070659_100894458	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Polyangiaceae → Sorangium → Sorangium cellulosum	776	Open in IMG/M
3300005366\|Ga0070659_101408909	Not Available	620	Open in IMG/M
3300005456\|Ga0070678_101085700	All Organisms → cellular organisms → Bacteria → Proteobacteria	738	Open in IMG/M
3300005456\|Ga0070678_102087462	All Organisms → cellular organisms → Bacteria → Proteobacteria	537	Open in IMG/M
3300005543\|Ga0070672_101156315	Not Available	689	Open in IMG/M
3300005543\|Ga0070672_101408649	Not Available	623	Open in IMG/M
3300005564\|Ga0070664_100633869	Not Available	993	Open in IMG/M
3300005577\|Ga0068857_101409330	Not Available	678	Open in IMG/M
3300005614\|Ga0068856_101360706	Not Available	725	Open in IMG/M
3300005616\|Ga0068852_100249836	All Organisms → cellular organisms → Bacteria	1699	Open in IMG/M
3300005616\|Ga0068852_101979171	Not Available	605	Open in IMG/M
3300005618\|Ga0068864_101167350	All Organisms → cellular organisms → Bacteria	768	Open in IMG/M
3300005834\|Ga0068851_10271115	Not Available	968	Open in IMG/M
3300005834\|Ga0068851_10727135	All Organisms → cellular organisms → Bacteria → Proteobacteria	613	Open in IMG/M
3300006358\|Ga0068871_100522156	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax → unclassified Variovorax → Variovorax sp.	1072	Open in IMG/M
3300006358\|Ga0068871_100756996	Not Available	893	Open in IMG/M
3300006854\|Ga0075425_102549505	Not Available	565	Open in IMG/M
3300006871\|Ga0075434_102514079	Not Available	516	Open in IMG/M
3300006904\|Ga0075424_101667341	Not Available	675	Open in IMG/M
3300009094\|Ga0111539_10643082	Not Available	1235	Open in IMG/M
3300009094\|Ga0111539_12336136	All Organisms → cellular organisms → Bacteria → Proteobacteria	620	Open in IMG/M
3300009101\|Ga0105247_10507961	Not Available	879	Open in IMG/M
3300009177\|Ga0105248_10018703	All Organisms → cellular organisms → Bacteria → Proteobacteria	7660	Open in IMG/M
3300009177\|Ga0105248_10111978	All Organisms → cellular organisms → Bacteria → Proteobacteria	3079	Open in IMG/M
3300010397\|Ga0134124_12596500	All Organisms → cellular organisms → Bacteria → Proteobacteria	549	Open in IMG/M
3300010399\|Ga0134127_11369447	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax → unclassified Variovorax → Variovorax sp.	778	Open in IMG/M
3300010401\|Ga0134121_11326572	Not Available	726	Open in IMG/M
3300011119\|Ga0105246_11097740	Not Available	726	Open in IMG/M
3300012094\|Ga0136638_10598857	All Organisms → cellular organisms → Bacteria → Proteobacteria	529	Open in IMG/M
3300012531\|Ga0136640_10316482	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	661	Open in IMG/M
3300012668\|Ga0157216_10222000	Not Available	888	Open in IMG/M
3300012900\|Ga0157292_10178509	Not Available	696	Open in IMG/M
3300012902\|Ga0157291_10272539	Not Available	573	Open in IMG/M
3300012905\|Ga0157296_10176119	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Rhizobacter	662	Open in IMG/M
3300012905\|Ga0157296_10202566	All Organisms → cellular organisms → Bacteria → Proteobacteria	634	Open in IMG/M
3300012916\|Ga0157310_10128551	Not Available	850	Open in IMG/M
3300012951\|Ga0164300_11048943	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → unclassified Comamonadaceae → Comamonadaceae bacterium	528	Open in IMG/M
3300012961\|Ga0164302_11108882	Not Available	625	Open in IMG/M
3300012989\|Ga0164305_10965561	Not Available	721	Open in IMG/M
3300013102\|Ga0157371_10764620	All Organisms → cellular organisms → Bacteria → Proteobacteria	726	Open in IMG/M
3300013296\|Ga0157374_11798967	Not Available	638	Open in IMG/M
3300013308\|Ga0157375_11813997	Not Available	723	Open in IMG/M
3300014325\|Ga0163163_11106654	Not Available	855	Open in IMG/M
3300014325\|Ga0163163_12472141	Not Available	577	Open in IMG/M
3300014745\|Ga0157377_10779084	Not Available	703	Open in IMG/M
3300014969\|Ga0157376_11916879	Not Available	630	Open in IMG/M
3300014969\|Ga0157376_12560480	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	550	Open in IMG/M
3300015201\|Ga0173478_10115572	Not Available	1014	Open in IMG/M
3300015265\|Ga0182005_1177794	Not Available	631	Open in IMG/M
3300015371\|Ga0132258_11705301	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax	1589	Open in IMG/M
3300015373\|Ga0132257_104606448	Not Available	502	Open in IMG/M
3300017789\|Ga0136617_11229353	Not Available	562	Open in IMG/M
3300017792\|Ga0163161_12093180	Not Available	503	Open in IMG/M
3300018432\|Ga0190275_12080698	All Organisms → cellular organisms → Bacteria → Proteobacteria	646	Open in IMG/M
3300018476\|Ga0190274_11438037	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax → unclassified Variovorax → Variovorax sp.	779	Open in IMG/M
3300018481\|Ga0190271_13412103	Not Available	532	Open in IMG/M
3300023073\|Ga0247744_1036158	All Organisms → cellular organisms → Bacteria → Proteobacteria	770	Open in IMG/M
3300023265\|Ga0247780_1162154	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	602	Open in IMG/M
3300023275\|Ga0247776_10365842	Not Available	531	Open in IMG/M
3300025147\|Ga0209511_1033969	All Organisms → cellular organisms → Bacteria → Proteobacteria	2489	Open in IMG/M
3300025315\|Ga0207697_10123778	Not Available	1114	Open in IMG/M
3300025581\|Ga0208355_1101456	Not Available	609	Open in IMG/M
3300025908\|Ga0207643_10765818	Not Available	625	Open in IMG/M
3300025913\|Ga0207695_11029160	Not Available	703	Open in IMG/M
3300025914\|Ga0207671_10946765	Not Available	680	Open in IMG/M
3300025923\|Ga0207681_10232942	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax → unclassified Variovorax → Variovorax sp. WDL1	1430	Open in IMG/M
3300025925\|Ga0207650_10094895	Not Available	2286	Open in IMG/M
3300025925\|Ga0207650_10152050	All Organisms → cellular organisms → Bacteria	1827	Open in IMG/M
3300025925\|Ga0207650_11209624	Not Available	643	Open in IMG/M
3300025926\|Ga0207659_10575700	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax → unclassified Variovorax → Variovorax sp.	959	Open in IMG/M
3300025926\|Ga0207659_10614124	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax → unclassified Variovorax → Variovorax sp.	928	Open in IMG/M
3300025927\|Ga0207687_10628703	All Organisms → cellular organisms → Bacteria	907	Open in IMG/M
3300025931\|Ga0207644_10131675	All Organisms → cellular organisms → Bacteria	1915	Open in IMG/M
3300025931\|Ga0207644_10311802	All Organisms → cellular organisms → Bacteria	1270	Open in IMG/M
3300025931\|Ga0207644_11605364	All Organisms → cellular organisms → Bacteria → Proteobacteria	545	Open in IMG/M
3300025933\|Ga0207706_10479352	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax → unclassified Variovorax → Variovorax sp.	1075	Open in IMG/M
3300025941\|Ga0207711_10197163	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	1837	Open in IMG/M
3300025941\|Ga0207711_10200723	All Organisms → cellular organisms → Bacteria	1820	Open in IMG/M
3300025941\|Ga0207711_10262925	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax → unclassified Variovorax → Variovorax sp.	1586	Open in IMG/M
3300025941\|Ga0207711_10358295	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1351	Open in IMG/M
3300025945\|Ga0207679_10947897	Not Available	788	Open in IMG/M
3300025945\|Ga0207679_11302586	All Organisms → cellular organisms → Bacteria → Proteobacteria	667	Open in IMG/M
3300025960\|Ga0207651_10062161	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Leptothrix → Leptothrix mobilis	2601	Open in IMG/M
3300025960\|Ga0207651_11029326	All Organisms → cellular organisms → Bacteria → Proteobacteria	736	Open in IMG/M
3300025961\|Ga0207712_11807526	Not Available	548	Open in IMG/M
3300026023\|Ga0207677_10380806	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax	1191	Open in IMG/M
3300026023\|Ga0207677_11604962	Not Available	602	Open in IMG/M
3300026035\|Ga0207703_10488599	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1154	Open in IMG/M
3300026035\|Ga0207703_12421662	Not Available	500	Open in IMG/M
3300026067\|Ga0207678_10180239	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax → unclassified Variovorax → Variovorax sp. WDL1	1804	Open in IMG/M
3300026088\|Ga0207641_10068325	All Organisms → cellular organisms → Bacteria → Proteobacteria	3046	Open in IMG/M
3300026088\|Ga0207641_10595897	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1081	Open in IMG/M
3300026089\|Ga0207648_10169065	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	1932	Open in IMG/M
3300026089\|Ga0207648_11189560	All Organisms → cellular organisms → Bacteria → Proteobacteria	716	Open in IMG/M
3300026118\|Ga0207675_100976597	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax → unclassified Variovorax → Variovorax sp.	865	Open in IMG/M
3300026142\|Ga0207698_10044187	All Organisms → cellular organisms → Bacteria → Proteobacteria	3345	Open in IMG/M
3300026142\|Ga0207698_11686575	Not Available	649	Open in IMG/M
3300027907\|Ga0207428_10406200	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	997	Open in IMG/M
3300028379\|Ga0268266_11397678	All Organisms → cellular organisms → Bacteria → Proteobacteria	675	Open in IMG/M
3300028596\|Ga0247821_10832687	All Organisms → cellular organisms → Bacteria → Proteobacteria	610	Open in IMG/M
3300028608\|Ga0247819_10718061	All Organisms → cellular organisms → Bacteria → Proteobacteria	612	Open in IMG/M
3300030784\|Ga0102758_10767323	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	535	Open in IMG/M
3300031938\|Ga0308175_102190432	Not Available	620	Open in IMG/M
3300033550\|Ga0247829_10081902	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax → unclassified Variovorax → Variovorax sp.	2378	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	70.83%
Environmental	Environmental	29.17%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	70.83%
Terrestrial	Environmental → Terrestrial	25.83%
Aquatic	Environmental → Aquatic	3.33%

Habitat	Taxonomy	Distribution
Rhizosphere	Host-Associated → Plants → Rhizosphere	45.83%
Soil	Environmental → Terrestrial → Soil	23.33%
Rhizoplane	Host-Associated → Plants → Rhizoplane	21.67%
Freshwater	Environmental → Aquatic → Freshwater	3.33%
Roots	Host-Associated → Plants → Roots	3.33%
Plant Litter	Environmental → Terrestrial → Plant Litter	1.67%
Peat	Environmental → Terrestrial → Peat	0.83%

Habitat	Taxonomy	Distribution
Soil	Host-Associated → Plants → Rhizosphere → Soil	25.00%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	20.83%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	20.00%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	17.50%
Ice	Environmental → Aquatic → Freshwater → Ice	3.33%
Loam	Environmental → Terrestrial → Soil → Loam	3.33%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	3.33%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.50%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	1.67%
Soil	Host-Associated → Plants → Rhizoplane → Soil	1.67%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	25.00%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	20.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	17.50%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	13.33%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	3.33%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.33%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	3.33%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	2.50%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.50%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.67%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	1.67%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	1.67%
Glacier	Environmental → Aquatic → Freshwater → Ice → Glacier	0.83%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.83%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.83%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	11.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	10.00%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	6.67%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	6.67%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	6.67%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	6.67%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	5.00%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	5.00%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	4.17%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	4.17%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	3.33%
Polar Desert Sand	Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand	2.50%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.50%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.67%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	1.67%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.67%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	1.67%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	1.67%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	1.67%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.67%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.67%
Glacier Valley	Environmental → Aquatic → Freshwater → Ice → Glacier → Glacier Valley	0.83%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.83%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.83%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.83%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.83%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	0.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.83%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.83%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.83%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300005290	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1	Host-Associated	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005333	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG	Host-Associated	Open in IMG/M
3300005335	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG	Host-Associated	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005834	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2	Host-Associated	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012094	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ858 (22.06)	Environmental	Open in IMG/M
3300012531	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ864 (21.06)	Environmental	Open in IMG/M
3300012668	Arctic soils microbial communities. Combined Assembly of 23 SPs	Environmental	Open in IMG/M
3300012900	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S179-409R-1	Environmental	Open in IMG/M
3300012902	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S169-409C-1	Environmental	Open in IMG/M
3300012905	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S013-104B-2	Environmental	Open in IMG/M
3300012916	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S213-509R-2	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013102	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG	Host-Associated	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015201	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S014-104B-1 (version 2)	Environmental	Open in IMG/M
3300015265	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300017789	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ322 (21.06)	Environmental	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018432	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300023073	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S154-409C-5	Environmental	Open in IMG/M
3300023265	Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L079-202R-5	Environmental	Open in IMG/M
3300023275	Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L199-509C-5	Environmental	Open in IMG/M
3300025147	Glacier valley bacterial and archeal communities from Borup Fiord, Nunavut, Canada, to study Microbial Dark Matter (Phase II) - ?SSSS metaG (SPAdes)	Environmental	Open in IMG/M
3300025315	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Host-Associated	Open in IMG/M
3300025581	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-3 deep-072012 (SPAdes)	Environmental	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025913	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025914	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028596	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glycerol_Day14	Environmental	Open in IMG/M
3300028608	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Xylose_Day6	Environmental	Open in IMG/M
3300030294	II_Fen_E3 coassembly	Environmental	Open in IMG/M
3300030784	Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines Pi 6A (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300033550	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0062589_1018151601	3300004156	Soil	MEKSAEQVYTDLLRQLASPGTLQPSVLADTFRDVERMHSMGQITDWQLQNA*
Ga0065712_102573872	3300005290	Miscanthus Rhizosphere	MEKTAEQVYTDLLRQLASPSASQPGVLADLFRDVERMHSMGH
Ga0070676_102938101	3300005328	Miscanthus Rhizosphere	MEKTAEQVYTDLLRQLASPSASQPGVLADLFRDVERMHSMGHITDWQLE
Ga0070683_1020286662	3300005329	Corn Rhizosphere	MEKTAEQLYTDLLRLLASPSAVQPAVLADTLRDVERMHSMGHITDWQLEK
Ga0070690_1015954312	3300005330	Switchgrass Rhizosphere	MEKTAEQLYTDLLRLLGSPSAVQPAVLADSFRDVERMHSMGHIT
Ga0070670_1000797464	3300005331	Switchgrass Rhizosphere	VELRPEQVYTDLLRQWGSPAATAPEVLANAFRDVERMHSM
Ga0070670_1013980112	3300005331	Switchgrass Rhizosphere	MEKTAEQLYTDLLRQLASPSAVQPGVLADTFRDVERMHSMGHITDWQLHNAREAYAKTI
Ga0070677_101395352	3300005333	Miscanthus Rhizosphere	MEHSPEQVYTDLLRQLASPAGTDPEVLANTFRDVERMHSMGQ
Ga0070666_106505841	3300005335	Switchgrass Rhizosphere	MEKTAEQLYTDLLRLLGSPSAVQPAVLADSFRDVERMHSMGHITDWQ
Ga0070661_1004227351	3300005344	Corn Rhizosphere	MDESPEQVYTTLLRQLASPVGKEPEVLASLFRDVERMHAMGQITDWQLHNAREAYARTA
Ga0070692_102064581	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	MEKTAAQLYTDLLRLLASPSAIQPEILADTFRDVERMHSMGHITDWQLHNAREAYAKTIE
Ga0070692_104379131	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	MEKTAEQLYTDLLRQLANPSAIQPAVLADTFRDVERMHSMGHI
Ga0070675_1001643071	3300005354	Miscanthus Rhizosphere	MEKTAEQLYTDLLRLLASPSAVQPGVLADSFRDIERMHSMGHITDWQLHNAREA
Ga0070675_1002978313	3300005354	Miscanthus Rhizosphere	MEKTAEQLYSDLLRLLASPSAVQPGVLADSFRDIERMHSMGHITDWQLHNAREA
Ga0070673_1008597082	3300005364	Switchgrass Rhizosphere	MEKTAEQIYTDLLRQLASPSATQPGVLADMFRDVERMHSKGHITDW
Ga0070659_1008944581	3300005366	Corn Rhizosphere	MMVAKEIAVEKTAEQLYTDLLRQLASPSAVQPAVLAQAFRDVERLHSMGHITDWQLHQARDAYAKTIER
Ga0070659_1014089091	3300005366	Corn Rhizosphere	MEHSPEQVYTELLRQLASPAATAPEILANAFREVERMHSMGQITDWQLQNARE
Ga0070678_1010857002	3300005456	Miscanthus Rhizosphere	MEKTAEQLYTDLLRLLANPSAVQPAVLADTFRDVERMHSMGRITDWQLDKAREAYANTIDRDP
Ga0070678_1020874622	3300005456	Miscanthus Rhizosphere	MEKTAEQLYTDLLRQLASPSAIQPSVLADTFRDVERMHSMGHITDW
Ga0070672_1011563151	3300005543	Miscanthus Rhizosphere	MEHSPEQVYTDLLRQLASPAGTDPEVLANTFRDVERMH
Ga0070672_1014086491	3300005543	Miscanthus Rhizosphere	MEHNPEQVYTDLLRQLASPAGTAPEVLANAFRNVERMHSMGQITDWQLQNAREAYAR
Ga0070664_1006338691	3300005564	Corn Rhizosphere	MEHSPEQVYTDLLRQLASPAGTDPEVLANTFRDVAI*
Ga0068857_1014093302	3300005577	Corn Rhizosphere	MEHSPEQVYTDLLRQLANPSATQPGVLADMFRDVERMHSMGHITDWQLEN
Ga0068856_1013607061	3300005614	Corn Rhizosphere	MEKTAEQVYTDLLRELASPSAVQPAVLADAFRDVERMHSMGRITDWQL
Ga0068852_1002498361	3300005616	Corn Rhizosphere	MEKTAEQVYTDLLCQLANPGVTQPVVVADLFREVELMHSRARSRTGNL
Ga0068852_1019791711	3300005616	Corn Rhizosphere	MDESPEQVYTTLLRQLASPVGKEPEVLASLFRDVERMH
Ga0068864_1011673501	3300005618	Switchgrass Rhizosphere	MEKTPEHVYTDLLRQLASPSAVQPAVLADAFRDVERLHAMGHITDW
Ga0068851_102711151	3300005834	Corn Rhizosphere	MEKTAEQVYTDLLRQLASPSASQPGVLADLFRDVERMHSMGHITDWQ
Ga0068851_107271352	3300005834	Corn Rhizosphere	MIAMEKTAEQLYTDLLRQLASPSAVQPGVLADTFRDVERMHSMGHITDWQLH
Ga0068871_1005221563	3300006358	Miscanthus Rhizosphere	MIAMEKTAEQLYTDLLRQLASPSAIQPAVLADTFRDVERMHSMGHI
Ga0068871_1007569961	3300006358	Miscanthus Rhizosphere	MEETAEQVYTDLLRQLASPSAAQPGALAEMFRDIERLHPMGRITD
Ga0075425_1025495051	3300006854	Populus Rhizosphere	MEKTAEQVYTDLLRQLASPSAVQPAVLADAFRDVERLHAMGHITDWQL
Ga0075434_1025140791	3300006871	Populus Rhizosphere	MEKTAEQVYTDLLRQLASPSAVQPAVLADAFRDVERLHAMGHITDWQLRQARDA
Ga0075424_1016673411	3300006904	Populus Rhizosphere	MEKTAEQVYTDLLRELASPSAVQPAVLADAFRDVERMHSMGRITDWQLQRARDAYEKT
Ga0111539_106430821	3300009094	Populus Rhizosphere	MEKTAEQVYTDLLRQLARPSASQPSVLADLFRDVERMHSMGRIPDWQL
Ga0111539_123361361	3300009094	Populus Rhizosphere	MMITKEIAMEKTAEQLYTDLLRQLASPSAVQPGVLADTFRDVERMHSMGHITDWQL
Ga0105247_105079611	3300009101	Switchgrass Rhizosphere	MEKTAEQVYTDLLRQLASPSAVQPAVLADAFRDVERLHAMGHITD
Ga0105248_100187037	3300009177	Switchgrass Rhizosphere	MEKTAEQVYTDLLRQLASPAGTDPEVLANTFRDVAI*
Ga0105248_101119781	3300009177	Switchgrass Rhizosphere	MEKTAEQIYTDLLRQLASPSATQPGVLADMFRDVERMHSKG
Ga0134124_125965002	3300010397	Terrestrial Soil	MMIAKEIAMEKTAEQLYTDLLRQLASPSAVQPDVLADTFRDVERMHSMGHITDW
Ga0134127_113694472	3300010399	Terrestrial Soil	MMSVEEIAMEKTAEQLYTDLLRQLANPSAIQPAVLADTFRDVERMHSMGHITDWQLH
Ga0134121_113265721	3300010401	Terrestrial Soil	MEKTAEQVYTDLLRQLASPSAVQPAVLADAFRDVER
Ga0105246_110977401	3300011119	Miscanthus Rhizosphere	MEKTAEQVYTDLLRQLASPSAVQPAVLADALRDVERMHAMGHITDWQLRQAGDAYE*
Ga0136638_105988571	3300012094	Polar Desert Sand	MNAMEKTAEQLYTDLLLQLASPSAVQPALLADTFRDVE
Ga0136640_103164822	3300012531	Polar Desert Sand	MEQSPEQVYTDLLRQLASPAGTDPEVLANMFRDVERMHSMGQITDWQLQNAREAYARTPG
Ga0157216_102220001	3300012668	Glacier Forefield Soil	MEKTAEQVYTDLLRQLASPGAIPPGVLADTFREVERMHSTGQIADWQLENAREAYASTVSAAGS
Ga0157292_101785091	3300012900	Soil	MEKTAEQVYTDLLRQLASPSASRPGMLADLFRDVERMHSMGRITDWQLENAREAY
Ga0157291_102725392	3300012902	Soil	MEKTAEQIYTDLLRQLASPSPTQPGVLADMFRDVERMHSKGHITDWQLENAR
Ga0157296_101761191	3300012905	Soil	MEKTAEQIYTDLLRQLASPSATQPGVLADMFRDVERMHS
Ga0157296_102025662	3300012905	Soil	MMIAKEIVMEKTAEQLYTDLLRLLASPSAVQPAVLADTLR
Ga0157310_101285511	3300012916	Soil	MEKTAEQVYTDLLCQVASPSASQPGVLADLFRDVER
Ga0164300_110489432	3300012951	Soil	MMSVEEIAMEKTAEQLYTDLLRQLASPSAIQPTVLAETFRDVE
Ga0164302_111088822	3300012961	Soil	MEKTAEQVYTDLLRQLASPAGTDPEALANTFREVERM
Ga0164305_109655613	3300012989	Soil	MEKTAEQVYTDLLRQLASPAGTDPEALANTFREVERMHSIGQITDWQLQNAQEAY
Ga0157371_107646201	3300013102	Corn Rhizosphere	MIAKEIAMEKTAEQLYTDLLRQLASPSAIQPSVLADTFRDVERMHSMGHITDWQLHNAREAYAKTIE
Ga0157374_117989671	3300013296	Miscanthus Rhizosphere	MGKTAEQVYTDLLRQLANPGVAQPVVVADMFREVELM
Ga0157375_118139973	3300013308	Miscanthus Rhizosphere	MEKTAEQVYTDLLRQLASPAGTDPEALANTFREVERMHSIGQITDWQLQNAQEAYART
Ga0163163_111066542	3300014325	Switchgrass Rhizosphere	MEKTAEQVYTDLLRQLANPGVAQPVVVADMFREVELMH
Ga0163163_124721412	3300014325	Switchgrass Rhizosphere	MDESPEQVYTTLLRQLASPVGKEPEVLASLFRDVERMHAMGQITDWQLHNAREAYA
Ga0157377_107790841	3300014745	Miscanthus Rhizosphere	MEKTAEQVYTDLLRQVASPSASQPGVLADLFRDVERMHSMGHITDWQLE
Ga0157376_119168791	3300014969	Miscanthus Rhizosphere	MEHSPEQVYTDLLRQLASPAGTDPEVLAKTFHDVERMHSMG
Ga0157376_125604801	3300014969	Miscanthus Rhizosphere	MMSVEEIAMEKTAEQLYTDLLRQLASPSAIQPAVLADTFRDVERMHSMGHITDWQ
Ga0173478_101155722	3300015201	Soil	MEKTAEQVYTDLLCQVASPSASQPGVLADLFRDVERMHSMGHITDWQLE
Ga0182005_11777941	3300015265	Rhizosphere	MEKTAEQVYSDLLRELASPSAVQPAVLANAFRDVERMH
Ga0132258_117053014	3300015371	Arabidopsis Rhizosphere	MMRVEEIAMEKTAEQLYTDLLRQLASPSAIQPAVLAETFRDVERMHSMGHITDWQLHNAREAY
Ga0132257_1046064481	3300015373	Arabidopsis Rhizosphere	MEKTAEQVYTDLLCQLANPGVAQPVVVADLFREVELMHSAGQITDWQ
Ga0136617_112293532	3300017789	Polar Desert Sand	MEKTAEQIYIDLLRQLASPFGIPPGVLADAFREVEQMHSTGQITDWQLQNAREAYSRTVEREP
Ga0163161_120931801	3300017792	Switchgrass Rhizosphere	MEKTAEQVYTDLLRQLASPSAIQPAVLADLFRDVERMHSMGRITDWQLQNARE
Ga0190275_120806981	3300018432	Soil	MEKTAEQVYSDLLRQLATPSAIEPAVLADTFRDVERMHSMGRITDWQLRNAREAYAATI
Ga0190274_114380371	3300018476	Soil	MEKTAEQLYTDLLRLLADPSAVQPAVLADTFRDVERMH
Ga0190271_134121031	3300018481	Soil	MAKTAEQIYTDLLRQLASPSATQPGVLADMFRDVERMHSKGHITDWQLENAREAYA
Ga0247744_10361582	3300023073	Soil	MEKTAEQLYTDLLRQLASPSAIQPGVLADTFRDVERMHSMGHITDWQLDKAREAYAKTIE
Ga0247780_11621541	3300023265	Plant Litter	MEKTAEQLYTDLLRLLANPSAVQPAVLADTFRDVERMHSMGRITDWQLEKAREAYANTI
Ga0247776_103658422	3300023275	Plant Litter	MEKTAEQIYTDLLRQLASPSATQPGVLADMFRDVERMHSKGHITDWQLEN
Ga0209511_10339694	3300025147	Glacier Valley	MEKTAEQTYTDLLRQLASPSATLPQVLAETFRDIERMHSMGHITDWQLKNAREAYAATIEREPSQ
Ga0207697_101237782	3300025315	Corn, Switchgrass And Miscanthus Rhizosphere	MEKTAEQIYTDLLRQLASPSATQPGVLADMFRDVERMHSKGHITD
Ga0208355_11014561	3300025581	Arctic Peat Soil	MEKTAEQVYTDLLRQLASPSTIQPGVLADTFRDVERMHSMGRITDWQLENAREAYASTVSAA
Ga0207643_107658182	3300025908	Miscanthus Rhizosphere	MEKTAEQIYTDLLRQLASPSATQPGVLADMFRDVERMHSKGHITDWQLENAREA
Ga0207695_110291601	3300025913	Corn Rhizosphere	MEKTAEQVYTDLLRQLASPSAVQPAVLADAFRDVERMHAMGHITDW
Ga0207671_109467653	3300025914	Corn Rhizosphere	MEKTAEQVYTDLLRQLASPSAVQPAVLADAFRDVERMH
Ga0207681_102329423	3300025923	Switchgrass Rhizosphere	MEKTAEQLYTDLLRQLASPSAVQPGILADTFRDVERMHSMGPITD
Ga0207650_100948953	3300025925	Switchgrass Rhizosphere	MEKTAEQIYTDLLRQLASPSATQPGVLADMFRDVERMHSKGHITDWQLENARE
Ga0207650_101520501	3300025925	Switchgrass Rhizosphere	MEKTAEQVYTDLLCQLANPGVAQPVVVADLFREVELMHSRARSRTGPR
Ga0207650_112096241	3300025925	Switchgrass Rhizosphere	MEKTAEQIYTDLLRQLASPSATQPGVLADMFRDVERMHSKGHITDWQLENAREAY
Ga0207659_105757001	3300025926	Miscanthus Rhizosphere	MEKTAEQLYSDLLRLLASPSAVQPGVLADSFRDIERMHSMGHITDWQLHNAREAY
Ga0207659_106141242	3300025926	Miscanthus Rhizosphere	MEKTAEQLYTDLLRLLASPSAVQPGVLADSFRDIERMHSMGHITDWQLHNAREAY
Ga0207687_106287033	3300025927	Miscanthus Rhizosphere	MEKTAEQVYTDLLRQLANPSAAQPVAVADMFREVERMHSAGQITDWQLENAREAYARTVS
Ga0207644_101316753	3300025931	Switchgrass Rhizosphere	MEKTAEQIYTDLLRQLASPSATQPGVLADMFRDVE
Ga0207644_103118023	3300025931	Switchgrass Rhizosphere	MEETAEQVYTDLLRQLASPSAAQPGALAEMFRDIERLHPMGRITDWQLENAREAYARTVS
Ga0207644_116053642	3300025931	Switchgrass Rhizosphere	MEKTAEQLYTDLLRQLANPSAIQPAVLADTFRDVERMHSM
Ga0207706_104793521	3300025933	Corn Rhizosphere	MEKTAAQLYTDLLRLLASPSAIQPEILADTFRDVERMHSMGHITDWQLHN
Ga0207711_101971631	3300025941	Switchgrass Rhizosphere	MEKTAEQVYTDLLCQVASPSASQPGVLADLFRDVERMHSM
Ga0207711_102007233	3300025941	Switchgrass Rhizosphere	MEKTAEQVYTDLLRQLASPAGTDPEVLANTFRDVAI
Ga0207711_102629253	3300025941	Switchgrass Rhizosphere	MEKTAEQLYTDLLRLLASPSAVQPAVLADTLRDVERMHSMGHITDWQLEKA
Ga0207711_103582951	3300025941	Switchgrass Rhizosphere	MEKTPEQVYTDLLRQLVSPSATQPGVLEDMFRDVERMHS
Ga0207679_109478973	3300025945	Corn Rhizosphere	MEKTAEQVYTDLLRQLASPSAVQPAVLADAFRDVERMHAMGHITDWQLRQARDAY
Ga0207679_113025861	3300025945	Corn Rhizosphere	MEKTAEQLYTDLLRLLGSPSAVQPAVLADSFRDVERLHSMGHITDWQPHN
Ga0207651_100621617	3300025960	Switchgrass Rhizosphere	MEKTAEQIYTDLLRQLASPSATKPGVLADMFCDVERMH
Ga0207651_110293262	3300025960	Switchgrass Rhizosphere	MEKTAEQLYTDLLRLLASPSAVQPAVLADTLRDVERMHSMGHI
Ga0207712_118075261	3300025961	Switchgrass Rhizosphere	MELSPEQVYTDLLRQLASPAGTAPEVLANAFRNVERMHSMGQI
Ga0207677_103808061	3300026023	Miscanthus Rhizosphere	MEKTAEQLYTDLLRLLASPSAVQPGVLADSFRDVERMHSMGHI
Ga0207677_116049622	3300026023	Miscanthus Rhizosphere	MEHSPEQVYTDLLRQLASPAGTTPEVLANAFRNVERM
Ga0207703_104885994	3300026035	Switchgrass Rhizosphere	MEKTAEQVYTDLLRQLASPSAVQPAVLADAFRDVERMHAMGHITDWQLRQARDAYEKTIE
Ga0207703_124216622	3300026035	Switchgrass Rhizosphere	MEKTAEQVYTDLLRQLASPSASQPGVLADLFRDVERMHSMGRIP
Ga0207678_101802393	3300026067	Corn Rhizosphere	MMIAMEKTAEQLYTDLLRLLANPSAVQPAVLADTFRDVERMH
Ga0207641_100683256	3300026088	Switchgrass Rhizosphere	MEKTAEQVYTDLLRQLASPSAVQPAVLADAFRDVERLHAMGHITDWQLRQARDAYEKTI
Ga0207641_105958973	3300026088	Switchgrass Rhizosphere	MEKTAEQVYTDLLRQLASPAGTDPEVLANTFRDFAI
Ga0207648_101690651	3300026089	Miscanthus Rhizosphere	MEKTAEQVYTDLLRQLASPSASRPGMLADLFRDVERCTQ
Ga0207648_111895602	3300026089	Miscanthus Rhizosphere	MMIAMEKTAEQLYTDLLRLLANPSAVQPAVLADTFRDVERMHSMGRI
Ga0207675_1009765972	3300026118	Switchgrass Rhizosphere	MMIAKEIVMEKTAEQLYTDLLRLLASPSAVQPAVLADTLRDVERMHSMGHITDWQLEK
Ga0207698_100441871	3300026142	Corn Rhizosphere	MEKTAEQVYTDLLRQLASPSAVQPAVLADAFRDVERLHAMGHITDWQLRRARD
Ga0207698_116865752	3300026142	Corn Rhizosphere	MDESPEQVYTTLLRQLASPVGKEPEVLASLFRDVERMHSMGQITDWQLHNAR
Ga0207428_104062002	3300027907	Populus Rhizosphere	VELRPEQVYTDLLRQWGSPAATAPEVLANAFRDVERMHSMGHIT
Ga0268266_113976781	3300028379	Switchgrass Rhizosphere	MEKTAEQLYTDLLRQLANPSAIQPAVLADTFRDVERMHSMGHITDWQLHNAREAYAKTIE
Ga0247821_108326872	3300028596	Soil	MEKTAEQLYTDLLRQLANPSAIQPAVLADTFRDVERMHSMGHITDRQLH
Ga0247819_107180612	3300028608	Soil	MEKTAEQLYTDLLRQLASPSAVQPDVLADTFRDVERMHSMGHIT
Ga0311349_112985432	3300030294	Fen	VEKTSEQMYSDLLLQLGSPTIVEPEVLVGYLRDVERMHSMGHITAWQLEHA
Ga0102758_107673233	3300030784	Soil	MEKTAEQVYTDLLRQLADPSAIQPAVLAQLFRDVERMHSMGHITDW
Ga0308175_1021904321	3300031938	Soil	MERSPEQIYTDLLRQLSSPAGTEPEVLANMFRDVERMHSMGQITDWQLENAREAYARTPG
Ga0247829_100819021	3300033550	Soil	MEKTAEQLYTDLLRQLASPSAVQPDVLADTFRDVERMHSMG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F073621

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences