Metagenome / Metatranscriptome Family F073556

Basic Information
Family ID	F073556
Family Type	Metagenome / Metatranscriptome
Number of Sequences	120
Average Sequence Length	58 residues
Representative Sequence	MIFDDKTDSEIFRSIEAEVAKALSELRCAKKDLEQAEVRMKFALATVHYLKQRYEDMK
Number of Associated Samples	75
Number of Associated Scaffolds	120

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Viruses
% of genes with valid RBS motifs	89.17 %
% of genes near scaffold ends (potentially truncated)	9.17 %
% of genes from short scaffolds (< 2000 bps)	63.33 %
Associated GOLD sequencing projects	66
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.60

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Duplodnaviria (80.833 % of family members)
NCBI Taxonomy ID	2731341
Taxonomy	All Organisms → Viruses → Duplodnaviria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake (19.167 % of family members)
Environment Ontology (ENVO)	Unclassified (43.333 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (52.500 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76 1B570J40625_1005202684 2JGI25908J49247_100147023 3JGI25908J49247_101684522 4JGI25924J51412_10041373 5JGI25923J51411_10942342 6Ga0065166_100035333 7Ga0069718_100031205 8Ga0069718_101694403 9Ga0069718_101756222 10Ga0007761_113127935 11Ga0078117_100303511 12Ga0078117_101615011 13Ga0075465_100440692 14Ga0070744_100115503 15Ga0070744_100681002 16Ga0102828_10546254 17Ga0102859_11876662 18Ga0114980_100287815 19Ga0114980_100818815 20Ga0114980_106506271 21Ga0114977_100234782 22Ga0114977_106686092 23Ga0114981_107689702 24Ga0114975_100006112 25Ga0114975_100062149 26Ga0114975_101434232 27Ga0114975_101440512 28Ga0114975_102887252 29Ga0114975_102923933 30Ga0105097_101005134 31Ga0114974_103030491 32Ga0114976_100120756 33Ga0114983_10116585 34Ga0114983_10883261 35Ga0114982_10071625 36Ga0114982_12831922 37Ga0133913_125748234 38Ga0151514_104207 39Ga0153697_11093 40Ga0153697_124410 41Ga0153697_16018 42Ga0153698_11935 43Ga0153698_138915 44Ga0153702_13197 45Ga0153700_1014637 46Ga0153700_106607 47Ga0153700_1071819 48Ga0153805_10442392 49Ga0157140_100000404 50Ga0157140_100001603 51Ga0157138_10218931 52Ga0164293_106055122 53Ga0181362_10371684 54Ga0181365_10631361 55Ga0181358_10199565 56Ga0181358_11119983 57Ga0181349_10513805 58Ga0181349_12105361 59Ga0181359_10018237 60Ga0181359_10238455 61Ga0181359_10465774 62Ga0181359_11205913 63Ga0207909_10057755 64Ga0222714_103247082 65Ga0222713_100139705 66Ga0222713_102010342 67Ga0222713_107454381 68Ga0222712_100022155 69Ga0222712_100474235 70Ga0222712_101412635 71Ga0244775_101076176 72Ga0244775_102976943 73Ga0244775_105573323 74Ga0244775_108631311 75Ga0208426_10466022 76Ga0209300_10274762 77Ga0208133_10228154 78Ga0209357_10035009 79Ga0209599_100021839 80Ga0209599_100065335 81Ga0209492_11245151 82Ga0209297_10134555 83Ga0209087_10109466 84Ga0209087_10641355 85Ga0209087_11777813 86Ga0209296_10077379 87Ga0209088_100612983 88Ga0209088_101147242 89Ga0209088_101746171 90Ga0209770_100494683 91Ga0209246_100387255 92Ga0209107_101926374 93Ga0209353_100817484 94Ga0209668_100442211 95Ga0209668_100518962 96Ga0247723_100224110 97Ga0315291_104521892 98Ga0315293_104280022 99Ga0315290_112097272 100Ga0315285_102555562 101Ga0315294_103512332 102Ga0315294_106928251 103Ga0315278_107750432 104Ga0315274_106557914 105Ga0315274_108640653 106Ga0315289_106019502 107Ga0315289_107722302 108Ga0315284_106974032 109Ga0315284_118630831 110Ga0315277_102373355 111Ga0315292_115830121 112Ga0315295_106878192 113Ga0315276_120663302 114Ga0334722_103653284 115Ga0334722_103987541 116Ga0335024_0141851_830_1006 117Ga0335020_0004757_5589_5765 118Ga0335020_0085921_456_647 119Ga0335012_0408872_248_421 120Ga0335058_0140697_9_185
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76 1B570J40625_1005202684 2Ga0065166_100035333 3Ga0069718_100031205 4Ga0007761_113127935 5Ga0078117_100303511 6Ga0078117_101615011 7Ga0075465_100440692 8Ga0114975_101440512 9Ga0105097_101005134 10Ga0222713_107454381
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58 1Ga0315289_106019502 2Ga0065166_100035333 3Ga0069718_100031205 4Ga0069718_101694403 5Ga0069718_101756222 6Ga0078117_100303511 7Ga0078117_101615011 8Ga0114977_106686092 9Ga0114981_107689702 10Ga0114975_101434232 11Ga0114975_101440512 12Ga0105097_101005134 13Ga0114983_10116585 14Ga0114983_10883261 15Ga0114982_12831922 16Ga0153698_138915 17Ga0153700_1071819 18Ga0157140_100000404 19Ga0181359_10465774 20Ga0181359_11205913 21Ga0207909_10057755 22Ga0222714_103247082 23Ga0222712_100022155 24Ga0244775_108631311 25Ga0208426_10466022 26Ga0209668_100518962 27Ga0315293_104280022 28Ga0335012_0408872_248_421
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Neighboring Clusters of Orthologous Genes (COGs)

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 58.14% β-sheet: 0.00% Coil/Unstructured: 41.86%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Structure Viewer
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.60
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.60
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Pfam ID	Name	% Frequency in 120 Family Scaffolds
PF09718	Tape_meas_lam_C	15.00
PF05065	Phage_capsid	5.83
PF13550	Phage-tail_3	1.67
PF03237	Terminase_6N	1.67
PF13392	HNH_3	1.67
PF07659	DUF1599	0.83
PF02195	ParBc	0.83

COG ID	Name	Functional Category	% Frequency in 120 Family Scaffolds
COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	Mobilome: prophages, transposons [X]	5.83

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	91.67 %
Unclassified	root	N/A	8.33 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	8.33 %
Viruses	superkingdom	All Organisms → Viruses	91.67 %

Name	Rank	Taxonomy	Distribution
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	80.83 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	10.83 %
Unclassified	root	N/A	8.33 %

Name	Rank	Taxonomy	Distribution
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	80.83 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	10.83 %
Unclassified	root	N/A	8.33 %

Name	Rank	Taxonomy	Distribution
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	10.83 %
Unclassified	root	N/A	8.33 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	80.83 %

Name	Rank	Taxonomy	Distribution
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	80.83 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	10.83 %
Unclassified	root	N/A	8.33 %

Name	Rank	Taxonomy	Distribution
environmental samples	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples	80.83 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	10.83 %
Unclassified	root	N/A	8.33 %

Name	Rank	Taxonomy	Distribution
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	10.83 %
Unclassified	root	N/A	8.33 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	80.83 %

Scaffold	Taxonomy	Length	IMG/M Link
3300002835\|B570J40625_100520268	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1112	Open in IMG/M
3300003277\|JGI25908J49247_10014702	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2397	Open in IMG/M
3300003277\|JGI25908J49247_10168452	Not Available	507	Open in IMG/M
3300003491\|JGI25924J51412_1004137	All Organisms → Viruses → Predicted Viral	2817	Open in IMG/M
3300003493\|JGI25923J51411_1094234	Not Available	503	Open in IMG/M
3300004112\|Ga0065166_10003533	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	3698	Open in IMG/M
3300004481\|Ga0069718_10003120	All Organisms → Viruses → Predicted Viral	3098	Open in IMG/M
3300004481\|Ga0069718_10169440	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1555	Open in IMG/M
3300004481\|Ga0069718_10175622	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	744	Open in IMG/M
3300004792\|Ga0007761_11312793	All Organisms → Viruses → Predicted Viral	1391	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	93.33%
Terrestrial	Environmental → Terrestrial	6.67%

Habitat	Taxonomy	Distribution
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	6.67%
Freshwater	Environmental → Aquatic → Freshwater	78.33%
Marine	Environmental → Aquatic → Marine	15.00%

Habitat	Taxonomy	Distribution
Coastal	Environmental → Aquatic → Marine → Coastal	1.67%
Ice	Environmental → Aquatic → Freshwater → Ice	0.83%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	1.67%
Lake	Environmental → Aquatic → Freshwater → Lake	42.50%
Lentic	Environmental → Aquatic → Freshwater → Lentic	20.83%
Lotic	Environmental → Aquatic → Freshwater → Lotic	10.00%
Sediment	Environmental → Aquatic → Freshwater → Sediment	4.17%
Unclassified	Environmental → Aquatic → Marine → Unclassified	11.67%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified	6.67%

Habitat	Taxonomy	Distribution
Epilimnion	Environmental → Aquatic → Freshwater → Lentic → Epilimnion	1.67%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	1.67%
Hypolimnion	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion	0.83%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	15.83%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	1.67%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	26.67%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	16.67%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	11.67%
Unclassified	Environmental → Aquatic → Freshwater → Lotic → Unclassified	10.00%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified	6.67%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	4.17%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	1.67%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	1.67%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface	5.83%
Deep Subsurface Sediment	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment	0.83%
Estuarine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine	5.83%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	1.67%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	5.83%
Freshwater	Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater	10.00%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	5.00%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater	1.67%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	0.83%
Freshwater And Sediment	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment	0.83%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	19.17%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	16.67%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	1.67%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	1.67%
Lake Water	Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Water	1.67%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	15.83%
Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment	2.50%
Surface Ice	Environmental → Aquatic → Freshwater → Ice → Unclassified → Surface Ice	0.83%

Visualization
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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002835	Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)	Environmental	Open in IMG/M
3300003277	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD	Environmental	Open in IMG/M
3300003491	Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.SD	Environmental	Open in IMG/M
3300003493	Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.SN	Environmental	Open in IMG/M
3300004112	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 2)	Environmental	Open in IMG/M
3300004481	Combined Assembly of Gp0112041, Gp0112042, Gp0112043	Environmental	Open in IMG/M
3300004792	Metatranscriptome of freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.SD (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005758	Cyanobacteria communities in tropical freswater systems - freshwater lake in Singapore	Environmental	Open in IMG/M
3300006037	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_>0.8_DNA	Environmental	Open in IMG/M
3300006484	Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535	Environmental	Open in IMG/M

Showing 1 to 10 of 75 entries

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
B570J40625_1005202684	3300002835	Freshwater	MIFDDKTDDEIFRSIEGEVAKALAELRCARRDLEQSEVRMKFALATIHYLKQRYEGK*
JGI25908J49247_100147023	3300003277	Freshwater Lake	MIFDDKTDDEIFRSIVAEIAKALSEIRCAKKDLEQADVRMKFALATVHHLKQRYEDIK*
JGI25908J49247_101684522	3300003277	Freshwater Lake	MIFDNKTEDEIFRSIEAEIAKALAELRCAKKDLEQAEVRMKFALATVHYLKQRYEDLK*
JGI25924J51412_10041373	3300003491	Freshwater Lake	MIFDNKTEDEIFRSIEAEIAKALXELRCAKKDLEQAEVRMKFALATVHYLKQRYEDLK*
JGI25923J51411_10942342	3300003493	Freshwater Lake	MIFDDKTNDEIFRSIEGEVAKALAELRCAKKDLEQAEVRMKFALATVHYLKQRYEDMK*
Ga0065166_100035333	3300004112	Freshwater Lake	MIGDIMIFDDKTDMEIYLSLEAETAKALSEIRCARKDLDQAEVRLRFVLTTIHYLKKRYEDMK*
Ga0069718_100031205	3300004481	Sediment	MIYDNKTDDEILRSLEAEVAKALSELRCAKKDLEQAEVRLRFALSTVHYLKQRFEGQ*
Ga0069718_101694403	3300004481	Sediment	MIYDNKTDEEILRSIEAEIAKALAEMRCAKKDLEQAEVRMKFSLATVHYLKNRYEDMK*
Ga0069718_101756222	3300004481	Sediment	MIFDNKTDDEIFRSIEAEVAKGLAEIRCAKKDLEQAEVRMKFALATVHYLKQRYEDMR*
Ga0007761_113127935	3300004792	Freshwater Lake	EDEIFRSIEAEIAKALSELRCAKKDLEQAEVRMKFALATVHYLKQRYEDLK*
Ga0078117_100303511	3300005758	Lake Water	MLFDDKPVEAILKSLEGEVAKALSELRCAKNDLAQCENRLKFILATVHYLKSRNDKEI*
Ga0078117_101615011	3300005758	Lake Water	MIFDDKPTEEVLRSLEGEVAKTLSEIRCAKNDLAQAESRMKFALATIHYLKNRENDLKD*
Ga0075465_100440692	3300006037	Aqueous	MIYDDKTPQEILRSLEGEIAKAISELRCAKNDMLQVESRLKFNLATVHYLKTRLNDKEI*
Ga0070744_100115503	3300006484	Estuarine	MIFDDKTDDELFRSIEAEVAKALSELRCAKKDLEQAEVRMKFALATIHYLKQRYEDMK*
Ga0070744_100681002	3300006484	Estuarine	MIFDNKTDSEIFRSIEAEVAKALSELRCAKKDLEQAEVRMKFALATIHYLKQRYEDMK*
Ga0102828_10546254	3300007559	Estuarine	MIFDGKTDMEIYLSLEAETAKSLSEIRCAKKDLEQAEVRLRFVLTTIHHMKNRYEGK*
Ga0102859_11876662	3300007708	Estuarine	MIFDDKTEDEIFRSIEGEVAKALSEIRCAKRDLEQAEVRMKFALATVHYLKQRYEDMK*
Ga0114980_100287815	3300009152	Freshwater Lake	MIFDNKTEDEIFRSIEAEVAKALAELRCAKRDLEQAEVRMKFALATVHYLKQRYEDLK*
Ga0114980_100818815	3300009152	Freshwater Lake	MIFDSKTEDEIFRSIEAETAKALAEIRCAKRDLEQAEVRMKFALATVHYLKQRYEDLK*
Ga0114980_106506271	3300009152	Freshwater Lake	MIFDDKTDMEIYLSLEAETAKALSEIRCARKDLDQAEVRLRFVLTTIHYLKKRYEDMK*
Ga0114977_100234782	3300009158	Freshwater Lake	MIFDNKTDDEIFRSIEAEIAKALSELRCAKRDLEQAEVRMKFALATVHYLKQRYEDMK*
Ga0114977_106686092	3300009158	Freshwater Lake	MIFDNKTEDEIFRSIEAEVAKALSETRCAKKDLEQAEVRMKFALATIHYLKNRYEDMK*
Ga0114981_107689702	3300009160	Freshwater Lake	MIFDSKTEDEIFRSIEAETAKALAEIRCAKRDLEQAEVRMKFALATIHYLKQRYEENKIWR*
Ga0114975_100006112	3300009164	Freshwater Lake	MIFDNKTDDEIFRSIEAEVAKALSEIRCAKKDLEQAEVRMKFALATVHYLKQRYEDMK*
Ga0114975_100062149	3300009164	Freshwater Lake	MIFDDKTDHEILRSIEGEVAKALSELRCAKKDLEQAEVRMKFALATVHYLKQRYEG*
Ga0114975_101434232	3300009164	Freshwater Lake	MIFDDKTDSEILRSIEGEVAKGLAEIRCAKKDLEQAEVRMRFALSVVHYLKQRYEGK*
Ga0114975_101440512	3300009164	Freshwater Lake	MQVFDDKSTGELIRSIEGEVAKALAEIRCSKKDLEQAETRMRFILAVVHYLKARI*
Ga0114975_102887252	3300009164	Freshwater Lake	MIFDDKTDDEIFRSIEAELAKALSETRCAKKDLEQAEVRMKFALATIHYLKQRYEDMK*
Ga0114975_102923933	3300009164	Freshwater Lake	MIFDSKTDDEIFRSIEAEVAKALSEIRCAKKDLEQAEVRMKFALATVHYLKQRYEDMK*
Ga0105097_101005134	3300009169	Freshwater Sediment	MMVFDDKTDMEIFQSIEAEAAKALAEIRCAKKDLAQAEVRIKFALRTVHYLKQRYEDYK*
Ga0114974_103030491	3300009183	Freshwater Lake	MIFDDKTDDEIFRSIEAEVAKALSETRCAKKDLEQAEVRMKFALATIHYLKQRYEDMR*
Ga0114976_100120756	3300009184	Freshwater Lake	MIFDDKTDHEILRSIEGEVAKALSELRCAKKDLEQSEVRMKFALATVHYLKQRYEG*
Ga0114983_10116585	3300009194	Deep Subsurface	MMIFDNKTDKEILRSIEGEVAKALSELRCARKDLEQAEVRMKFALATVHYLKQRFED*
Ga0114983_10883261	3300009194	Deep Subsurface	VIGVLMIFDNKTDLEIYLSLEAETAKALSEVRCARKDLDQAETRLRFVLTTIHYLKKRYEGQ*
Ga0114982_10071625	3300009419	Deep Subsurface	MIFDNKTDLEIYLSLEAETAKALSEVRCARKDLDQAETRLRFVLTTIHYLKKRYEGQ*
Ga0114982_12831922	3300009419	Deep Subsurface	MMIFDDKTDKEILRSIEGEAAKALSEIRCARKDLEQAEVRVKFALATIHYLKQRYEDMK*
Ga0133913_125748234	3300010885	Freshwater Lake	MIFDNKTDDEIFRSIEAELAKALSETRCAKKDLEQAEVRMKFALATIHYLKQRYEDMK*
Ga0151514_104207	3300011115	Freshwater	MTGDIMIFDNKTEDEIFRSIEAEVAKALSELRCAKKDLEQAEVRMKFALATIHYLKQRYEDMK*
Ga0153697_11093	3300011334	Freshwater	MIFDDKSDDEIFRSIEAELAKALAELRCAKKDLEQAEVRMKFALATVHYLKQRYEGK*
Ga0153697_124410	3300011334	Freshwater	MIFDDKTDIEIYLSLEAETAKSLSEIRCAKKDLEQAEVRLRFVLTTIHYLKNRYEGK*
Ga0153697_16018	3300011334	Freshwater	MIFDNKTNNEIFRSIEAEVAKALAELRCAKRDLEQAEVRMKFALATVHYLKQRYEDMK*
Ga0153698_11935	3300011335	Freshwater	MIFDDKTDDEIFRSIEAEVAKALSELRCAKKDLEQAEVRMRFALATIHYLKQRYEDMK*
Ga0153698_138915	3300011335	Freshwater	MIFDNKSDDEIFRSIEGEVAKALSELRCAKKDLEQAEVRMKFSLATVHYLKQRYEGK*
Ga0153702_13197	3300011337	Freshwater	MIFDDKTDDEIFRSIEAEVAKGLSELRCARKDLEQAEVRMKFALATIHYLKQRYEDIK*
Ga0153700_1014637	3300011339	Freshwater	MIFDDKTEDEIFRSIEGEVAKALSEIRCAKKDLEQAEVRMKFALATIHYLKQRYEDMK*
Ga0153700_106607	3300011339	Freshwater	MIFDDKTDDEILRSLEAETAKALSELRCARKDLEQAEVRLRFALSTVHYLKQRFEGQ*
Ga0153700_1071819	3300011339	Freshwater	MIFDDKTADEIFRSIEAEVAKGLSELRCARKDLEQAEVRMKFALATIHYLKQRYEDIK*
Ga0153805_10442392	3300012013	Surface Ice	MIFDDKTDSEIFRSIEGEVAKALSEIRCAKRDLEQAEVRMKFALATIHYLKQRYEDMK*
Ga0157140_100000404	3300012348	Freshwater	MMIFDDKTDKEILRSIEGETAKALAEIRCAKADLEQAEVRMKFALATIHYLKKRFED*
Ga0157140_100001603	3300012348	Freshwater	MMIFDDKTDKEILRSIEGEVAKALSELRCARKDLEQAEVRMKFALATVHYLKQRYED*
Ga0157138_10218931	3300012352	Freshwater	MMIFDDKTDKEILRSIEGEVAKALSELRCARKDLEQAEVRMKFALATVHYLKQRFED*
Ga0164293_106055122	3300013004	Freshwater	MIFDDKTEDEIFRSIEGEVAKALSELRCAKRDLEQAEVRMKFALATIHYLKQRYEDMK*
Ga0181362_10371684	3300017723	Freshwater Lake	MIFDNKTEDEIFRSIEGEVAKALAELRCAKKDLEQAEVRMKFALATVHYLKQRYEDMK
Ga0181365_10631361	3300017736	Freshwater Lake	KTEDEIFRSIEAEVAKALAELRCAKKDLEQAEVRMKFALATVHYLKQRYEDLK
Ga0181358_10199565	3300017774	Freshwater Lake	MIFDNKTEDEIFRSIEAEVAKALAELRCAKKDLEQAEVRMKFALATVHYLKQRYEDLK
Ga0181358_11119983	3300017774	Freshwater Lake	MIFDSKTDDEIFRSIEAEIAKALAEMRCAKKDLEQAEVRMKFALATVHYLKQRYEDLK
Ga0181349_10513805	3300017778	Freshwater Lake	DMMIFDNKTEDEIFRSIEAEVAKALAELRCAKKDLEQAEVRMKFALATVHYLKQRYEDLK
Ga0181349_12105361	3300017778	Freshwater Lake	MIFDDKTDSEIFRSIEAETAKALSELRCAKKDLEQAEVRMKFALATIHYLKQRYEDMK
Ga0181359_10018237	3300019784	Freshwater Lake	MIFDDKTNDEIFRSIEGEVAKALAELRCAKKDLEQAEVRMKFALATVHYLKQRYEDMK
Ga0181359_10238455	3300019784	Freshwater Lake	KDMMIFDNKTEDEIFRSIEAEVAKALAELRCAKKDLEQAEVRMKFALATVHYLKQRYEDL
Ga0181359_10465774	3300019784	Freshwater Lake	MIFDNKTEDEIFRSIEAEIAKALAELRCAKKDLEQAEVRMKFALATVHYLKQRYEDLK
Ga0181359_11205913	3300019784	Freshwater Lake	MIFDDKTDDEIFRSIVAEIAKALSEIRCAKKDLEQADVRMKFALATVHHLKQRYEDIK
Ga0207909_10057755	3300020572	Freshwater	MIFDDKTDDEIFRSIEGEVAKALAELRCARRDLEQSEVRMKFALATIHYLKQRYEGK
Ga0222714_103247082	3300021961	Estuarine Water	MIFDNKTDLEIYQSLEAETAKSLSEIRCAKKDLEQAEVRLRFVLTTIHYLKNRYEGK
Ga0222713_100139705	3300021962	Estuarine Water	MEVSMIFDDKTDDEIFRSVEAEVAKALNEIRCAKRDLEQAEVRMKFVLATVHYLKQRYEG
Ga0222713_102010342	3300021962	Estuarine Water	MIFDDKTDMEIYLSLEAETAKSISEIRCAKKDLEQAEVRLRFVLTTIHYLKNRYEDMK
Ga0222713_107454381	3300021962	Estuarine Water	LAELSININNDLEVEMIFDDKTDMEIYLSLEAETAKSLSEIRCARKDLEQAEVRLRFVLTTI
Ga0222712_100022155	3300021963	Estuarine Water	MIFDDKTDDEIFRSVEAEVAKALNEIRCAKRDLEQAEVRMKFVLATVHYLKQRYEGR
Ga0222712_100474235	3300021963	Estuarine Water	MIFDDKTDMEIYLSLEAETAKSLSEIRCARKDLEQAEVRLRFVLTTIHYMKKRYEDYK
Ga0222712_101412635	3300021963	Estuarine Water	MIFDDKPTMEVLRSLEGEVAKTLAELRCAKNDLTQAESRMKFALATIHYLKNREND
Ga0244775_101076176	3300024346	Estuarine	MIFDDKTDDELFRSIEAEVAKALSELRCAKKDLEQAEVRMKFALATIHYLKQRYEDMK
Ga0244775_102976943	3300024346	Estuarine	MIFDNKTDSEIFRSIEAEVAKALSELRCAKKDLEQAEVRMKFALATIHYLKQRYEDMK
Ga0244775_105573323	3300024346	Estuarine	MIFDGKTDMEIYLSLEAETAKSLSEIRCAKKDLEQAEVRLRFVLTTIHHMKNRYEGK
Ga0244775_108631311	3300024346	Estuarine	EVCMIFDDKPTEEVLRSLEGEIAKALAEIRCGKNDLTQAESRLKFALATVHYLKDRANDLKD
Ga0208426_10466022	3300025451	Aqueous	MIYDDKTPQEILRSLEGEIAKAISELRCAKNDMLQVESRLKFNLATVHYLKTRLNDKEI
Ga0209300_10274762	3300027365	Deep Subsurface	MIFDNKTDKEILRSIEGEVAKALSELRCARKDLEQAEVRMKFALATVHYLKQRFED
Ga0208133_10228154	3300027631	Estuarine	MIFDDKTDDELFRSIEAEVAKALSELRCAKKDLEQAEVRMKFALATVHYLKQRYEDMK
Ga0209357_10035009	3300027656	Freshwater Lake	MIFDNKTEDEIFRSIEAEIAKALSELRCAKKDLEQAEVRMKFALATVHYLKQRYEDLK
Ga0209599_100021839	3300027710	Deep Subsurface	MMIFDNKTDKEILRSIEGEVAKALSELRCARKDLEQAEVRMKFALATVHYLKQRFED
Ga0209599_100065335	3300027710	Deep Subsurface	VIGVLMIFDNKTDLEIYLSLEAETAKALSEVRCARKDLDQAETRLRFVLTTIHYLKKRYEGQ
Ga0209492_11245151	3300027721	Freshwater Sediment	MVFDDKTDMEIFQSIEAEAAKALAEIRCAKKDLAQAEVRIKFALRTVHYLKQRYEEQ
Ga0209297_10134555	3300027733	Freshwater Lake	MIFDNKTDDEIFRSIEAEIAKALSELRCAKRDLEQAEVRMKFALATVHYLKQRYEDMK
Ga0209087_10109466	3300027734	Freshwater Lake	MIFDDKTDMEIYLSLEAETAKALSEIRCARKDLDQAEVRLRFVLTTIHYLKKRYEDMK
Ga0209087_10641355	3300027734	Freshwater Lake	MIFDNKTDDEIFRSIEAEVAKALSEIRCAKKDLEQAEVRMKFALATVHYLKQRYEDMK
Ga0209087_11777813	3300027734	Freshwater Lake	MIFDDKTDHEILRSIEGEVAKALSELRCAKKDLEQSEVRMKFALATVHYLKQRYEG
Ga0209296_10077379	3300027759	Freshwater Lake	MIFDSKTDDEIFRSIEAEVAKALSEIRCAKKDLEQAEVRMKFALATVHYLKQRYEDMK
Ga0209088_100612983	3300027763	Freshwater Lake	MIFDSKTEDEIFRSIEAETAKALAEIRCAKRDLEQAEVRMKFALATVHYLKQRYEDLK
Ga0209088_101147242	3300027763	Freshwater Lake	MIFDNKTEDEIFRSIEAEVAKALAELRCAKRDLEQAEVRMKFALATVHYLKQRYEDLK
Ga0209088_101746171	3300027763	Freshwater Lake	MIFDNKTEDEIFRSIEAEIAKALAELRCAKRDLEQAEVRMKFALATVHYLKQRYEDLK
Ga0209770_100494683	3300027769	Freshwater Lake	MIGDIMIFDDKTDMEIYLSLEAETAKALSEIRCARKDLDQAEVRLRFVLTTIHYLKKRYEDMK
Ga0209246_100387255	3300027785	Freshwater Lake	FDDKTDDEIFRSIVAEIAKALSEIRCAKKDLEQADVRMKFALATVHHLKQRYEDIK
Ga0209107_101926374	3300027797	Freshwater And Sediment	MIFDDKTDSEIFRSIEAEVAKALSELRCAKKDLEQAEVRMKFALATIHYLKQRYEDMR
Ga0209353_100817484	3300027798	Freshwater Lake	MIFDDKPTMEVLRSLEGEVAKTLAELRCAKNDLTQAESRMKFALATIHYLKNRETDLKDL
Ga0209668_100442211	3300027899	Freshwater Lake Sediment	MIFDDKTDMEIYLSLEAETAKSLSEIRCARKDLDQAEVRLRFVLTTIHHLKKRYEDMK
Ga0209668_100518962	3300027899	Freshwater Lake Sediment	MIFDDKTDDEIFRSVEAEVAKALAEMRCAKKDLEQSEVRMKFALATIHYLKQRYEGN
Ga0247723_100224110	3300028025	Deep Subsurface Sediment	MMIFDDKTDKEILRSIEGEVAKALSEIRCARKDLEQSEVRMKFALATVHYLKQRYEDMK
Ga0315291_104521892	3300031707	Sediment	MIFDDKTDSEIFRSIEGEVAKALSELRCAKKDLEQAEVRMKFALATVHYLKQRYEDMK
Ga0315293_104280022	3300031746	Sediment	MMIFDDKTEDEIFRSIEAELAKALAEMRCAKKDLDQAEVRMKFALATIHHLKQRYEG
Ga0315290_112097272	3300031834	Sediment	MIFDDKTDSEIFRSIEGEVAKALSELRCAKKDLEQAEVRMKFALATIHYLKQRYEDMK
Ga0315285_102555562	3300031885	Sediment	MIFDDKTDSEIFRSIEGETAKALSELRCAKKDLEQAEVRMKFALATVHYLKQRYEDMK
Ga0315294_103512332	3300031952	Sediment	MIFDNKTDDEIFRSIEGEVAKALSELRCARKDLEQAEVRMKFALATVHYLKQRYEDMK
Ga0315294_106928251	3300031952	Sediment	MIFDDKTDSEIFRSIEAEVAKALSELRCAKKDLEQAEVRMKFALATIHYLKQRYEDMK
Ga0315278_107750432	3300031997	Sediment	MIFDDKTDSEIFRSIEAETAKALSELRCAKKDLEQAEVRMKFALATVHYLKQRYEDMK
Ga0315274_106557914	3300031999	Sediment	MIFDDKTDSEIFRSIEAEVAKALSELRCAKKDLEQAEVRMKFALATIHYLKQRYEDIK
Ga0315274_108640653	3300031999	Sediment	MIFDDKTEDEIFRSIEAEVAKALAEMRCAKKDLEQVEVRMKFALATIHHLKQRYEG
Ga0315289_106019502	3300032046	Sediment	MIFDDKTDSEIFRSIEAEVAKALSELRCAKKDLEQAEVRMKFALATVHYLKQRYEDMK
Ga0315289_107722302	3300032046	Sediment	MIFDDKTDDEIFRSVEAEVAKALAEMRCAKKDLEQSEVRMKFALATVHYLKQRYEG
Ga0315284_106974032	3300032053	Sediment	MIFDDKTNDELFRSIEAEVAKALSELRCAKKDLEQAEVRMKFALATIHYLKQRYEDMK
Ga0315284_118630831	3300032053	Sediment	MIFDDKTDSEIFRSIEGETAKALSELRCAKKDLEQAEVRMKFALATVHYLKQRYEDM
Ga0315277_102373355	3300032118	Sediment	MIFDNKTDDEIFRSIEGEVAKALSEIRCAKKDLEQAEVRMKFALATVHYLKQRYEDMK
Ga0315292_115830121	3300032143	Sediment	MIFDNKTDSEIFRSIEAEVAKALSELRCAKKDLEQAEVRMKFALATIHYLKQRYEDMKXN
Ga0315295_106878192	3300032156	Sediment	MIFDNKTDSEIFRSIEGETAKALSELRCAKKDLEQAEVRMKFALATIHYLKQRYEDMK
Ga0315276_120663302	3300032177	Sediment	MIFDDKTDSEIFRSIEGEVAKALSELRCAKKDLEQAEVRMKFALATIHYLKQRYEDMKXN
Ga0334722_103653284	3300033233	Sediment	MIFDDKTDSEIFRSIEAEVAKALSELRCAKKDLEQAEVRMKFALATVHYLKQRYEDMR
Ga0334722_103987541	3300033233	Sediment	MIFDNKTDDEIFRSIEGEVAKALSELRCARKDLEQAEVRMKFALATIHYLKQRYEDMK
Ga0335024_0141851_830_1006	3300034051	Freshwater	MIFDDKTEDEIFRSIEGEVAKALSELRCAKRDLEQAEVRMKFALATIHYLKQRYEDMK
Ga0335020_0004757_5589_5765	3300034082	Freshwater	MIFDDKTDSEIFRSIEAEVAKALSELRCAKRDLEQAEVRMKFALATIHYLKQRYEDMK
Ga0335020_0085921_456_647	3300034082	Freshwater	MIGDFMIFDDKTNDEIFRSIEAEVAKALSELRCAKRDLEQAEVRMKFALATIHYLKQRYEDMK
Ga0335012_0408872_248_421	3300034093	Freshwater	MIFDDKTDMEILRSIEGEVAKALAELRCAKKDLEQAEVRMKFALATVHYLKQRYEGK
Ga0335058_0140697_9_185	3300034121	Freshwater	MIFDDKSDDEIFRSIEAEVAKALSELRCAKRDLEQAEVRMKFALATIHYLKQRYEDMK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F073556

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences