Metagenome / Metatranscriptome Family F073524

Basic Information
Family ID	F073524
Family Type	Metagenome / Metatranscriptome
Number of Sequences	120
Average Sequence Length	49 residues
Representative Sequence	MATTMCEIDGRRPAVATVRIRQNGEERTIAVCEEHLRELQGQSR
Number of Associated Samples	94
Number of Associated Scaffolds	120

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	97.50 %
% of genes near scaffold ends (potentially truncated)	99.17 %
% of genes from short scaffolds (< 2000 bps)	94.17 %
Associated GOLD sequencing projects	90
AlphaFold2 3D model prediction	No

Most Common Taxonomy
Group	Unclassified (56.667 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (22.500 % of family members)
Environment Ontology (ENVO)	Unclassified (36.667 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (62.500 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 15.91% β-sheet: 40.91% Coil/Unstructured: 43.18%
Feature Viewer

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Pfam ID	Name	% Frequency in 120 Family Scaffolds
PF04069	OpuAC	2.50
PF00730	HhH-GPD	1.67
PF00892	EamA	1.67
PF13460	NAD_binding_10	1.67
PF13365	Trypsin_2	0.83
PF04545	Sigma70_r4	0.83
PF12697	Abhydrolase_6	0.83
PF04239	DUF421	0.83
PF00296	Bac_luciferase	0.83
PF10137	TIR-like	0.83
PF03160	Calx-beta	0.83
PF10011	DUF2254	0.83
PF00144	Beta-lactamase	0.83
PF00589	Phage_integrase	0.83
PF02129	Peptidase_S15	0.83
PF03640	Lipoprotein_15	0.83
PF13177	DNA_pol3_delta2	0.83
PF00970	FAD_binding_6	0.83
PF13302	Acetyltransf_3	0.83
PF03681	Obsolete Pfam Family	0.83
PF12680	SnoaL_2	0.83
PF02572	CobA_CobO_BtuR	0.83

COG ID	Name	Functional Category	% Frequency in 120 Family Scaffolds
COG0122	3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase	Replication, recombination and repair [L]	1.67
COG0177	Endonuclease III	Replication, recombination and repair [L]	1.67
COG1059	Thermostable 8-oxoguanine DNA glycosylase	Replication, recombination and repair [L]	1.67
COG1194	Adenine-specific DNA glycosylase, acts on AG and A-oxoG pairs	Replication, recombination and repair [L]	1.67
COG2231	3-Methyladenine DNA glycosylase, HhH-GPD/Endo3 superfamily	Replication, recombination and repair [L]	1.67
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	0.83
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	0.83
COG2109	ATP:corrinoid adenosyltransferase	Coenzyme transport and metabolism [H]	0.83
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	0.83
COG2323	Uncharacterized membrane protein YcaP, DUF421 family	Function unknown [S]	0.83
COG2367	Beta-lactamase class A	Defense mechanisms [V]	0.83
COG4315	Predicted lipoprotein with conserved Yx(FWY)xxD motif (function unknown)	Function unknown [S]	0.83

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.67 %
All Organisms	root	All Organisms	43.33 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.67 %
cellular organisms	root	All Organisms → cellular organisms	43.33 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.67 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	43.33 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.67 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	24.17 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	5.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.67 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	18.33 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1.67 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.67 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.83 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.67 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3.33 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	1.67 %
Sphingomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	0.83 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.83 %
Pseudomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.67 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.67 %
Pseudomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae	0.83 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.83 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	0.83 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	0.83 %
Sphingomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.67 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.67 %
Paraburkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia	0.83 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.83 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.83 %
Pseudomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas	0.83 %
Sphingomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.67 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.67 %
unclassified Pseudomonas	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → unclassified Pseudomonas	0.83 %
unclassified Paraburkholderia	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → unclassified Paraburkholderia	0.83 %
Amycolatopsis	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis	0.83 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.83 %
Sphingomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.67 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.67 %
Pseudomonas sp. 11/12A	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → unclassified Pseudomonas → Pseudomonas sp. 11/12A	0.83 %
Paraburkholderia sp. PDC91	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → unclassified Paraburkholderia → Paraburkholderia sp. PDC91	0.83 %
Amycolatopsis	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis	0.83 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.83 %
Sphingomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	0.83 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2035918004\|FACENC_F56XM5W01E1JHV	Not Available	517	Open in IMG/M
3300000891\|JGI10214J12806_10097900	All Organisms → cellular organisms → Bacteria	876	Open in IMG/M
3300003998\|Ga0055472_10025382	All Organisms → cellular organisms → Bacteria	1338	Open in IMG/M
3300004114\|Ga0062593_101226840	All Organisms → cellular organisms → Bacteria	789	Open in IMG/M
3300004153\|Ga0063455_101161966	All Organisms → cellular organisms → Bacteria	576	Open in IMG/M
3300004156\|Ga0062589_100660445	All Organisms → cellular organisms → Bacteria	920	Open in IMG/M
3300004479\|Ga0062595_100742512	All Organisms → cellular organisms → Bacteria	797	Open in IMG/M
3300004480\|Ga0062592_100420354	Not Available	1072	Open in IMG/M
3300005327\|Ga0070658_10784704	All Organisms → cellular organisms → Bacteria	828	Open in IMG/M
3300005334\|Ga0068869_102043747	Not Available	514	Open in IMG/M
3300005343\|Ga0070687_100287981	All Organisms → cellular organisms → Bacteria	1037	Open in IMG/M
3300005365\|Ga0070688_101432592	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → unclassified Pseudomonas → Pseudomonas sp. 11/12A	561	Open in IMG/M
3300005441\|Ga0070700_100028796	All Organisms → cellular organisms → Bacteria	3307	Open in IMG/M
3300005549\|Ga0070704_100790936	All Organisms → cellular organisms → Bacteria	847	Open in IMG/M
3300005617\|Ga0068859_101700989	All Organisms → cellular organisms → Bacteria	697	Open in IMG/M
3300006028\|Ga0070717_10723701	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	904	Open in IMG/M
3300006573\|Ga0074055_11487788	Not Available	635	Open in IMG/M
3300006844\|Ga0075428_101374031	Not Available	742	Open in IMG/M
3300006846\|Ga0075430_100444508	All Organisms → cellular organisms → Bacteria	1070	Open in IMG/M
3300006852\|Ga0075433_10750394	Not Available	854	Open in IMG/M
3300009098\|Ga0105245_10702059	Not Available	1045	Open in IMG/M
3300009098\|Ga0105245_11549130	Not Available	714	Open in IMG/M
3300009100\|Ga0075418_10852000	Not Available	985	Open in IMG/M
3300009147\|Ga0114129_10920868	All Organisms → cellular organisms → Bacteria	1106	Open in IMG/M
3300009147\|Ga0114129_11849336	Not Available	733	Open in IMG/M
3300009147\|Ga0114129_11929697	Not Available	715	Open in IMG/M
3300009156\|Ga0111538_10073975	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4336	Open in IMG/M
3300009156\|Ga0111538_13747034	Not Available	526	Open in IMG/M
3300009162\|Ga0075423_10958729	Not Available	908	Open in IMG/M
3300009168\|Ga0105104_10704548	Not Available	581	Open in IMG/M
3300009176\|Ga0105242_10104192	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2408	Open in IMG/M
3300009176\|Ga0105242_10762858	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	954	Open in IMG/M
3300009176\|Ga0105242_11513669	Not Available	702	Open in IMG/M
3300009176\|Ga0105242_11711558	Not Available	665	Open in IMG/M
3300009176\|Ga0105242_11827142	Not Available	647	Open in IMG/M
3300010371\|Ga0134125_11117730	Not Available	862	Open in IMG/M
3300010375\|Ga0105239_10773667	Not Available	1099	Open in IMG/M
3300010397\|Ga0134124_12993785	Not Available	516	Open in IMG/M
3300010399\|Ga0134127_10858599	Not Available	960	Open in IMG/M
3300010403\|Ga0134123_10889425	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	895	Open in IMG/M
3300011119\|Ga0105246_10039550	All Organisms → cellular organisms → Bacteria	3178	Open in IMG/M
3300012897\|Ga0157285_10225316	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	602	Open in IMG/M
3300012897\|Ga0157285_10292544	Not Available	551	Open in IMG/M
3300012898\|Ga0157293_10209383	Not Available	593	Open in IMG/M
3300012910\|Ga0157308_10073417	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	949	Open in IMG/M
3300012911\|Ga0157301_10472429	Not Available	502	Open in IMG/M
3300012951\|Ga0164300_10883565	Not Available	563	Open in IMG/M
3300012988\|Ga0164306_11185777	Not Available	639	Open in IMG/M
3300012989\|Ga0164305_11734374	Not Available	562	Open in IMG/M
3300014326\|Ga0157380_10919569	Not Available	902	Open in IMG/M
3300015201\|Ga0173478_10188632	Not Available	855	Open in IMG/M
3300015371\|Ga0132258_13359096	Not Available	1100	Open in IMG/M
3300015371\|Ga0132258_13568284	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1064	Open in IMG/M
3300015372\|Ga0132256_102557086	Not Available	611	Open in IMG/M
3300015372\|Ga0132256_102810355	Not Available	585	Open in IMG/M
3300015372\|Ga0132256_102987291	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	569	Open in IMG/M
3300015372\|Ga0132256_103577660	Not Available	522	Open in IMG/M
3300015373\|Ga0132257_100103167	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3286	Open in IMG/M
3300015373\|Ga0132257_100728122	All Organisms → cellular organisms → Bacteria	1234	Open in IMG/M
3300015373\|Ga0132257_103006396	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	614	Open in IMG/M
3300015374\|Ga0132255_106180659	Not Available	507	Open in IMG/M
3300017792\|Ga0163161_10919287	Not Available	742	Open in IMG/M
3300018027\|Ga0184605_10305622	Not Available	720	Open in IMG/M
3300018055\|Ga0184616_10222447	Not Available	711	Open in IMG/M
3300018067\|Ga0184611_1219203	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	676	Open in IMG/M
3300018422\|Ga0190265_10542608	Not Available	1278	Open in IMG/M
3300018432\|Ga0190275_10277694	All Organisms → cellular organisms → Bacteria → Proteobacteria	1630	Open in IMG/M
3300018465\|Ga0190269_10147425	Not Available	1214	Open in IMG/M
3300018469\|Ga0190270_10344758	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1351	Open in IMG/M
3300018469\|Ga0190270_12402809	Not Available	589	Open in IMG/M
3300018469\|Ga0190270_13017215	Not Available	532	Open in IMG/M
3300018469\|Ga0190270_13074760	Not Available	528	Open in IMG/M
3300018481\|Ga0190271_13351288	Not Available	537	Open in IMG/M
3300019356\|Ga0173481_10321524	Not Available	728	Open in IMG/M
3300020016\|Ga0193696_1124580	Not Available	651	Open in IMG/M
3300021078\|Ga0210381_10103297	Not Available	927	Open in IMG/M
3300021344\|Ga0193719_10050913	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1794	Open in IMG/M
3300022898\|Ga0247745_1035465	Not Available	756	Open in IMG/M
3300025792\|Ga0210143_1017237	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1266	Open in IMG/M
3300025919\|Ga0207657_11401996	Not Available	525	Open in IMG/M
3300025923\|Ga0207681_11063213	Not Available	679	Open in IMG/M
3300025925\|Ga0207650_10582888	All Organisms → cellular organisms → Bacteria	939	Open in IMG/M
3300025926\|Ga0207659_10633925	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	913	Open in IMG/M
3300025927\|Ga0207687_10264261	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1373	Open in IMG/M
3300025927\|Ga0207687_10875542	Not Available	768	Open in IMG/M
3300025930\|Ga0207701_10181069	All Organisms → cellular organisms → Bacteria → Proteobacteria	1858	Open in IMG/M
3300025932\|Ga0207690_10183627	All Organisms → cellular organisms → Bacteria	1577	Open in IMG/M
3300025932\|Ga0207690_10725051	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	818	Open in IMG/M
3300025934\|Ga0207686_11116415	Not Available	643	Open in IMG/M
3300025934\|Ga0207686_11374734	Not Available	581	Open in IMG/M
3300025935\|Ga0207709_11751401	Not Available	517	Open in IMG/M
3300025936\|Ga0207670_10683880	Not Available	848	Open in IMG/M
3300025937\|Ga0207669_10275755	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1266	Open in IMG/M
3300025937\|Ga0207669_11213847	Not Available	639	Open in IMG/M
3300025960\|Ga0207651_11074805	All Organisms → cellular organisms → Bacteria → Terrabacteria group	721	Open in IMG/M
3300025961\|Ga0207712_10620889	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	937	Open in IMG/M
3300025961\|Ga0207712_12109242	Not Available	504	Open in IMG/M
3300026067\|Ga0207678_10226050	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis	1602	Open in IMG/M
3300026118\|Ga0207675_100195470	Not Available	1941	Open in IMG/M
3300026121\|Ga0207683_10032734	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4516	Open in IMG/M
3300026121\|Ga0207683_10894453	All Organisms → cellular organisms → Bacteria → Terrabacteria group	824	Open in IMG/M
3300026933\|Ga0207578_1020276	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → unclassified Paraburkholderia → Paraburkholderia sp. PDC91	511	Open in IMG/M
3300027364\|Ga0209967_1002918	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2237	Open in IMG/M
3300027909\|Ga0209382_11145700	Not Available	799	Open in IMG/M
3300027909\|Ga0209382_12275048	Not Available	510	Open in IMG/M
3300028379\|Ga0268266_12322553	Not Available	508	Open in IMG/M
3300028380\|Ga0268265_10912427	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	863	Open in IMG/M
3300028380\|Ga0268265_12018737	Not Available	584	Open in IMG/M
3300028717\|Ga0307298_10014970	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1972	Open in IMG/M
3300028722\|Ga0307319_10293160	Not Available	538	Open in IMG/M
3300028787\|Ga0307323_10153095	Not Available	832	Open in IMG/M
3300028793\|Ga0307299_10356476	Not Available	548	Open in IMG/M
3300028828\|Ga0307312_11119612	Not Available	521	Open in IMG/M
3300028875\|Ga0307289_10177007	Not Available	877	Open in IMG/M
3300031226\|Ga0307497_10217577	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	837	Open in IMG/M
3300031740\|Ga0307468_101476090	Not Available	629	Open in IMG/M
3300032002\|Ga0307416_103711036	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	511	Open in IMG/M
3300032013\|Ga0310906_10587019	Not Available	766	Open in IMG/M
3300032205\|Ga0307472_101053623	All Organisms → cellular organisms → Bacteria → Terrabacteria group	766	Open in IMG/M
3300033550\|Ga0247829_10219612	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1517	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	50.83%
Environmental	Environmental	49.17%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	50.83%
Terrestrial	Environmental → Terrestrial	43.33%
Aquatic	Environmental → Aquatic	5.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	43.33%
Rhizosphere	Host-Associated → Plants → Rhizosphere	38.33%
Rhizoplane	Host-Associated → Plants → Rhizoplane	12.50%
Sediment	Environmental → Aquatic → Sediment	2.50%
Freshwater	Environmental → Aquatic → Freshwater	1.67%
Marine	Environmental → Aquatic → Marine	1.67%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	37.50%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	25.00%
Soil	Host-Associated → Plants → Rhizosphere → Soil	13.33%
Loam	Environmental → Terrestrial → Soil → Loam	5.83%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	5.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	5.00%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.50%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.67%
Wetlands	Environmental → Aquatic → Marine → Wetlands	1.67%
Soil	Host-Associated → Plants → Rhizoplane → Soil	1.67%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	27.50%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	25.00%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	13.33%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	5.83%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	5.00%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.00%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	5.00%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.50%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.67%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	1.67%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.67%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.67%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.67%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	1.67%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	22.50%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	10.83%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	10.00%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	5.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	4.17%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	4.17%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	3.33%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	3.33%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	3.33%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	3.33%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.50%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.50%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	2.50%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	2.50%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	1.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.67%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.67%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	1.67%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.67%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	0.83%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.83%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.83%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.83%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.83%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.83%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2035918004	Soil microbial communities from sample at FACE Site 2 North Carolina CO2-	Environmental	Open in IMG/M
3300000891	Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil	Environmental	Open in IMG/M
3300003998	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleC_D2	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004153	Grasslands soil microbial communities from Hopland, California, USA (version 2)	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300005327	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG	Host-Associated	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental	Open in IMG/M
3300005365	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG	Environmental	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006573	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAC (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009168	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 19-21cm September2015	Environmental	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012897	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S074-202C-1	Environmental	Open in IMG/M
3300012898	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S194-509B-1	Environmental	Open in IMG/M
3300012910	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S198-509B-2	Environmental	Open in IMG/M
3300012911	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S088-202R-2	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300015201	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S014-104B-1 (version 2)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300018055	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_90_coex	Environmental	Open in IMG/M
3300018067	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_coex	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018432	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T	Environmental	Open in IMG/M
3300018465	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 IS	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300020016	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3m1	Environmental	Open in IMG/M
3300021078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_coex redo	Environmental	Open in IMG/M
3300021344	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a2	Environmental	Open in IMG/M
3300022898	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S109-311C-5	Environmental	Open in IMG/M
3300025792	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleC_D2 (SPAdes)	Environmental	Open in IMG/M
3300025919	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026933	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10K4-12 (SPAdes)	Environmental	Open in IMG/M
3300027364	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant Co AM (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028717	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_158	Environmental	Open in IMG/M
3300028722	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_368	Environmental	Open in IMG/M
3300028787	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_381	Environmental	Open in IMG/M
3300028793	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_159	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300028875	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_143	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300033550	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
FACENCA_3077560	2035918004	Soil	MATQMCEIDGRRPAVATVRIRQNGEERTIAVCEEHLR
JGI10214J12806_100979002	3300000891	Soil	MATTMCEIDGRRPAVATVRIRQNGEEQTIAVCEEHLRELQGQSRGAARSPF
Ga0055472_100253821	3300003998	Natural And Restored Wetlands	MATTMCEIDGRRPAVATVRIRQNGEERTIAVCEEHLRELQGQSRGVGRSPFGGRSLFDEF
Ga0062593_1012268403	3300004114	Soil	MATRMCEIDGIRPAVATVRISQNGEERTIAVCEEHLRELQGR
Ga0063455_1011619662	3300004153	Soil	MATTMCEIDGVRPAVATVRITQNGEERTIAVCEEHLRELQGRSRAGARSPFGGRSSL
Ga0062589_1006604452	3300004156	Soil	VATTMCEIDGRRPAVATVRIRQNGEERTIAVCEEHLRELQGQSRGAG
Ga0062595_1007425122	3300004479	Soil	MATTMCEIDGRRPAVATVRIRQNGEEQTIAVCEEHLRELQGQSRGAARSPFGGRSSLF
Ga0062592_1004203541	3300004480	Soil	MATTICEIDGRRPAVATVRIRQNGEERTIAVCEEHLRELQGQSR
Ga0070658_107847041	3300005327	Corn Rhizosphere	MATTMCEIDGVRPAVATVRIRQNGEERTIAVCEEHLRELQGQSRGAARSPF
Ga0068869_1020437471	3300005334	Miscanthus Rhizosphere	MATTMCEIDGRRPAVATVRIRQNGEERTLAVCEEHLRELQGQSRGVGRSPFGG
Ga0070687_1002879811	3300005343	Switchgrass Rhizosphere	MATRMCEIDGIRPAVATVRISQNGEERTIAVCEEHLRELQGRSRAGA
Ga0070688_1014325921	3300005365	Switchgrass Rhizosphere	MATTMCEIDGRRPAVATVRIRQNGEERTIAVCEEHLRELQ
Ga0070700_1000287964	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	MATTMCEIDGRRPAVATVRIRQNGEERTLAVCEEHLRELQGQSRGVGRSP
Ga0070704_1007909361	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	MATTMCEIDGRRPAVATVRIRQNGEEQTIAVCEEHLRELQGQSRGAARSPFG
Ga0068859_1017009891	3300005617	Switchgrass Rhizosphere	MATTMCEIDGVRPAVATVRIRQNGEERTIAVCEEHLRELQGQSR
Ga0070717_107237011	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MATTMCEIDGRRPAVATVRIRQNGEERTIAVCEEHLR
Ga0074055_114877881	3300006573	Soil	MATTICEIDGVRPAVATVRIRQNGEEQTIAVCEEHLRELQGQSRGAARSPFGGRSSLFDE
Ga0075428_1013740311	3300006844	Populus Rhizosphere	MATRMCEIDGRRPAVATVRVRQNGEERTIAVCEEHLRELQ
Ga0075430_1004445082	3300006846	Populus Rhizosphere	MATTICEIDGVRPAVATVRIRQNGEERTIAVCEEHLR
Ga0075433_107503942	3300006852	Populus Rhizosphere	MATTMCEIDGRRPAVATVRIRQNGEERTIAVCEEHLRELQGQS
Ga0105245_107020593	3300009098	Miscanthus Rhizosphere	MATTMCEIDRVRPAVATVRISQNGEERTIAVCEEHLRELQGRSRAGARSPFGGRSRF
Ga0105245_115491301	3300009098	Miscanthus Rhizosphere	MATTICAIDGVRPAVATVRIRQNGEERTLAVCEEHLRELQG
Ga0075418_108520002	3300009100	Populus Rhizosphere	MATTMCEIDGRRPAVASVRIRQNGQERTIAVCEEH
Ga0114129_109208681	3300009147	Populus Rhizosphere	MATTMCEIDGRRPAVATVRIRQNGEERTIAVCEEHLRELQGQSRGAGRSPFGGRSL
Ga0114129_118493362	3300009147	Populus Rhizosphere	MATTMCEIDGRRPAVATVRIRQNGEERTIAVCEEHL
Ga0114129_119296973	3300009147	Populus Rhizosphere	MCEIDGIRPAVATVRISQNGEERTIAVCEEHLRELQGRSRAGARPPFGGRSSRFDEFFADFFGDTAFGG
Ga0111538_100739751	3300009156	Populus Rhizosphere	MATTMCEIDGRRPAVATVRIRQNGEERTIAVCEEHLRELQGQSG
Ga0111538_137470341	3300009156	Populus Rhizosphere	MATTMCEIDGRRLAVATVRIRQDGEERTIAVCEEHLRELQGQTRGATRSPFGGAS
Ga0075423_109587292	3300009162	Populus Rhizosphere	MATTMCEIDGRRPAVATVRIRQNGEERTIAVCEEHLRELQGQSRGAGRSPFGGGSL
Ga0105104_107045482	3300009168	Freshwater Sediment	MATTMCEIDGRRPAVASVRIRQNGEERTLAVGEEHLRELQGQSRGAVRSPFG
Ga0105242_101041927	3300009176	Miscanthus Rhizosphere	MATTMCEIDGVRPAVATVRISQNGEERTIAVCEEHLRELQGRSRAGGR
Ga0105242_107628581	3300009176	Miscanthus Rhizosphere	MCEIDGIRPAVATVRISQNGEERTIAVCEEHLRELQGRS
Ga0105242_115136691	3300009176	Miscanthus Rhizosphere	MATTMCEIDGVRPAVATVRISQNGEERTIAVCEEHLRELQGRSRAGARSPFGG
Ga0105242_117115581	3300009176	Miscanthus Rhizosphere	MAATICEIDGVRPAVASVRIRQNGEERTIAVCEEHLRELQGQGRGAGRSPFGGRSLFDE
Ga0105242_118271423	3300009176	Miscanthus Rhizosphere	MATTICEIDGVRPAVATVRIRQNGEERTIAVCEEHLRELQGQSRVAARSPFGGRSS
Ga0134125_111177303	3300010371	Terrestrial Soil	VATTICEIDGVRPAVATVRVRQNGEERTIAVCEEHLRELQSQSRGAARSPFGGRSSLFDEFFSDFFGDSP
Ga0105239_107736673	3300010375	Corn Rhizosphere	MATTMCEIDGRRPAVASVRIRQNGEERTIAVCEEHLRELQGQSLGAGRSPFGRRSLFDEFFSDFFGDSGLGS
Ga0134124_129937851	3300010397	Terrestrial Soil	MPTTICEIDGVRPAVATVRIRQNGEERTIAVCEEHLREL
Ga0134127_108585993	3300010399	Terrestrial Soil	MATTMCEIDGRRPAVASVRIRQNGEERTIAVCEEHLRELQGQSRGAGRSPFGGGSLFDE
Ga0134123_108894252	3300010403	Terrestrial Soil	MATTICEIDGVRPAVATVRIRQNGEERTIAVCEEHLRELQGQSRGAGRSPFGGRSSLFDEFFS
Ga0105246_100395501	3300011119	Miscanthus Rhizosphere	MATTMCEIDRVRPAVATVRISQNGEERTIAVCEEHLRELRSRSRAGARS
Ga0157285_102253162	3300012897	Soil	MATTMCEIDGVRPAVATVRISQNGEERTIAVCEEHLRELQGR
Ga0157285_102925441	3300012897	Soil	MATTICEIDGRRPAVATVRIRQNGEERTIAVCEEH
Ga0157293_102093832	3300012898	Soil	MATTMCEIDGRRPAVASVRIRQNGEERTIAVCEEHLRELQGQTRGAGRSPFGGRSLF
Ga0157308_100734171	3300012910	Soil	MATTMCEIDGRRPAVATVRIRQNGEERTLAVCEEHLRELQGQS
Ga0157301_104724291	3300012911	Soil	MATRMCEIDGIRPAVATVRISQNGEERTIAVCEEHLRELQGRSRA
Ga0164300_108835653	3300012951	Soil	MATTMCEIDGRRPAVATVRIRQNGEERTLAVCEEHLREL
Ga0164306_111857772	3300012988	Soil	MATTMCEIDGRRPAVATVRIRQNGEEQTIAVCEEHLRELQGQNRGAARSPFGG
Ga0164305_117343741	3300012989	Soil	MATTMCEIDGVRPAVATVRITQNGEERTIAVCEEHLRELQGRSRA
Ga0157380_109195692	3300014326	Switchgrass Rhizosphere	MATTMCEIDGRRPAVASVRIRQNGEERTIAVCEEHLRELQGQSRA
Ga0173478_101886321	3300015201	Soil	MATTMCEIDGRRPAVATVRIRQNGEDRTIAVCEEHLR
Ga0132258_133590963	3300015371	Arabidopsis Rhizosphere	MATTMCEIDGRRPAVATVRIRQNGEERTIAVCEEHLRELQGQSLGA
Ga0132258_135682843	3300015371	Arabidopsis Rhizosphere	MATTICEIDGVRPAVATVRIRQNGEERTIAVCEEHLRELQ
Ga0132256_1025570861	3300015372	Arabidopsis Rhizosphere	MATTMCEIDGRRPAVATVRIRQNGEERTIAVCEEHLRELQGQSRGAGRSPFGGGSLFDE
Ga0132256_1028103552	3300015372	Arabidopsis Rhizosphere	VATTICEIDGVRPAVATVRIRQNGEERTIAVCEEHLRELQGQSRG
Ga0132256_1029872911	3300015372	Arabidopsis Rhizosphere	MCEIDGRRPAVATVRIRQNGEERTIAVCEEHLRELQGQSR
Ga0132256_1035776601	3300015372	Arabidopsis Rhizosphere	MATTMCEIDGRRPAVATVRIRQNGEERTIAVCEEHLRELQGQSRGAGRSPF
Ga0132257_1001031671	3300015373	Arabidopsis Rhizosphere	MATTMCEIDGRRPAVATVRIRQNGEERTIAVCEEHLRELQGQSRGA
Ga0132257_1007281222	3300015373	Arabidopsis Rhizosphere	MATTLCEIDGRRPAVATVRIRQNGEERTIAVCEEHLRELQGQSRGAGRSPFGG
Ga0132257_1030063961	3300015373	Arabidopsis Rhizosphere	MATTMCEIDGRRPAVATVRIRQNGEERTIAVCEEHLRELQGQ
Ga0132255_1061806591	3300015374	Arabidopsis Rhizosphere	MATTMCEIDGRRPAVATVRIRQNGEERTIAVCEEHLRELQGQSR
Ga0163161_109192873	3300017792	Switchgrass Rhizosphere	MATTMCEIDGRRPAVATVRIRQNGEERTIAVCEEHLREFQGQSRGAARSPFGGRS
Ga0184605_103056222	3300018027	Groundwater Sediment	MATTMCEIDGRRPAVATVRIRQNGEERTIAVCEEHLRELQGQSRAATRSPFGG
Ga0184616_102224471	3300018055	Groundwater Sediment	MATTMCEIDGRRPAVASVRIRQNGEERTIAVCEEHLRELQAQTSAAARSPFGGRSSL
Ga0184611_12192031	3300018067	Groundwater Sediment	MATTMCEIDGRRPAVATVRVRQNGEEQTIAVCEEHLRELQGQSSAA
Ga0190265_105426082	3300018422	Soil	MATTMCEIDGVRPAVATVRIRQNGEERTIAVCEEHLRE
Ga0190275_102776944	3300018432	Soil	VATTMCEIDGVRPAVATVRIRQNGEERTIAVCEEHLRELQGQSR
Ga0190269_101474251	3300018465	Soil	MATTMCEIDGRRPAVASLRIRQNGEERTIAVCEEHLRELQGQSRGAGR
Ga0190270_103447581	3300018469	Soil	MATTMCEIDGRRPAVATVRIRQNGEERTLAVCEEHLRELQGQSRGVGRSPF
Ga0190270_124028092	3300018469	Soil	MATTMCEIDGRRPAVATVRIRQNGEERTIAVCEEHLRELQAQ
Ga0190270_130172151	3300018469	Soil	MATTMCEIDGRRPAVATVRIRQNGEERTIAVCEEHLRE
Ga0190270_130747601	3300018469	Soil	MATTMCEIDGRRPAVASVRIRQNGEERTIAVCEEHLRELQGQSRGAGRSPFG
Ga0190271_133512881	3300018481	Soil	MATTMCEIDERRPAVATVRIRQNGEERTIAVCEEHLRELQGQSRGAARSPFSGRSSLFDEFFSDFFGDSPLGG
Ga0173481_103215242	3300019356	Soil	MATTMCEIDGRRPAVASVRIRQNGEERTIAVCEEHL
Ga0193696_11245801	3300020016	Soil	MATTICEIDRRRPAVATVRIRQNGEERTIAVCEEHLRELQGQSRGAARSPFG
Ga0210381_101032971	3300021078	Groundwater Sediment	MATTMCEIDGRRPAVATVRIRQNGEERTLAVCEEHL
Ga0193719_100509135	3300021344	Soil	MATTMCEIDGVRPAVATVRISQNGEERTIAVCEEHLRELQGRSRAGAGSPF
Ga0247745_10354652	3300022898	Soil	MATTMCEIDGRRPAVASVRIRQNGEERTIAVCEEHLRELEGQSRGTGRLPFGGRSLFDEFFSDFFGDSGP
Ga0210143_10172373	3300025792	Natural And Restored Wetlands	MATTMCEIDGRRPAVATVRIRQNGEERTIAVCEEHLRELQGQSRGAGR
Ga0207657_114019962	3300025919	Corn Rhizosphere	MATTMCEIDGVRPAVATVRISQNGEERTIAVCDEHLRELQGRSRAGARPPFGGRSSRFDEFFADFFGDTAFGG
Ga0207681_110632133	3300025923	Switchgrass Rhizosphere	MATRMCEIDGIRPAVATVRISQNGEERTIAVCEEHLRELQGRSRAGARPPFGGRSSRF
Ga0207650_105828881	3300025925	Switchgrass Rhizosphere	MATTMCEIDGVRPAVATVRIRQNGEERTIAVCEEHLR
Ga0207659_106339251	3300025926	Miscanthus Rhizosphere	MATRMCEIDGIRPAVATVRISQNGEERTIAVCEEHLRELQGRSRAGARPPFGGRSS
Ga0207687_102642613	3300025927	Miscanthus Rhizosphere	MATRMCEIDGIRPAVATVRISQNGEERTIAVCEEHLRELQGRSRAGARPPFGGRSSRFDEFFADFFG
Ga0207687_108755421	3300025927	Miscanthus Rhizosphere	MATTMCEIDGRRPAVATVRIRQNGEERTLAVCEEHLRELQGQSRGVGRSPFGGG
Ga0207701_101810692	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	MATTMCEIDGVRPAVATVRISQNGEERTIAVCEEHLRELQGRSRAGARPPFGGRSSRFDEFFADFFGDTAF
Ga0207690_101836273	3300025932	Corn Rhizosphere	MATTMCEIDGRRPAVATVRIRQNGEERTIAVCEEHLRELQGQSRGAGRSPFGGRSLFD
Ga0207690_107250511	3300025932	Corn Rhizosphere	MATTMCEIDGVRPAVATVRIRQNGEERTIAVCEEH
Ga0207686_111164151	3300025934	Miscanthus Rhizosphere	MATTMCEIDGVRPAVATVRISQNGEERTIAVCEEHLRELQGRSRAGARSPFGGR
Ga0207686_113747341	3300025934	Miscanthus Rhizosphere	MATTICEIDGVRPAVATVRIRQNGEERTIAVCEEHLRELQGQSRGAGRSPFGGGSLF
Ga0207709_117514011	3300025935	Miscanthus Rhizosphere	MATTMCEIDGRRPAVASVRIRQNGEERTIAVCEEHLRELQGQSRGAGRSPFGG
Ga0207670_106838803	3300025936	Switchgrass Rhizosphere	MATTMCEIDRVRPAVATVRISQNGEERTIAVCEEHLRELQGRSRAGARSPF
Ga0207669_102757551	3300025937	Miscanthus Rhizosphere	MATTMCEIDGVRPAVATVRIRQNGEERTIAVCEEHLRELQGQS
Ga0207669_112138471	3300025937	Miscanthus Rhizosphere	MATTMCEIDGRRPAVASVRIRQNGEERTIAVCEEHLRELQG
Ga0207651_110748053	3300025960	Switchgrass Rhizosphere	MATTICEIDGVRPAVATVRIRQNGEERTIAVCEEHLRE
Ga0207712_106208893	3300025961	Switchgrass Rhizosphere	MATRMCEIDGIRPAVATVRISQNGEERTIAVCEEHLRELQGRSRAGARPPFGG
Ga0207712_121092422	3300025961	Switchgrass Rhizosphere	MATTMCEIDGRRPAVATVRIRQNGEERTLAVCEEHLRELQGQSRGVGRSPL
Ga0207678_102260503	3300026067	Corn Rhizosphere	MATTMCEIDGRRPAVASVRIRQNGEERTIAVCEEHLRELQGQ
Ga0207675_1001954703	3300026118	Switchgrass Rhizosphere	MATTMCEIDGRRPAVATVRIRQNGEERTLAVCEEHLRELQGQSRGVGR
Ga0207683_100327348	3300026121	Miscanthus Rhizosphere	MATTMCEIDGRRPAVASVRIRQNGEERTIAVCEEHLRELQGQTRG
Ga0207683_108944533	3300026121	Miscanthus Rhizosphere	MATTMCEIDRVRPAVATVRISQNGEERTIAVCEEHLRELQGRSRAGARSP
Ga0207578_10202761	3300026933	Soil	MATTMCEIDGVRPAVATVRISQNGEERTIAVCEEHLRELQGRSRAGARSPFGGRSRFDEFFADFFGDSAF
Ga0209967_10029181	3300027364	Arabidopsis Thaliana Rhizosphere	MATTMCEIDGRRPAVASVRIRQNGEERTIAWPFRSK
Ga0209382_111457002	3300027909	Populus Rhizosphere	MATTMCEIDGRRPAVATVRIRQNGEERTIAVCEEHLRELQGQSRGAGRSPFGGRSLFDEF
Ga0209382_122750481	3300027909	Populus Rhizosphere	MATTMCEIDGRRPAVATVRIRQNGEEQTIAVCEEHLRELQGQSRAAGRS
Ga0268266_123225531	3300028379	Switchgrass Rhizosphere	MATTICEIDGRRPAVATVRIRQNGEERTIAVCEEHLRELQGQSRAAARSPFGGRSSLFDEFFS
Ga0268265_109124271	3300028380	Switchgrass Rhizosphere	MATRMCEIDGIRPAVATVRISQNGEERTIAVCEEHLRELQGRSRAGARPP
Ga0268265_120187371	3300028380	Switchgrass Rhizosphere	MATTMCEIDGRRPAVASVRIRQNGEERTIAVCEEHLREL
Ga0307298_100149701	3300028717	Soil	MATTMCEIDGRRPAVATVRIRQNGEERTLAVCEEHLRELQ
Ga0307319_102931602	3300028722	Soil	MATTMCEIDGVRPAVATVRISQNGEERTIAVCEEHLRELQG
Ga0307323_101530951	3300028787	Soil	MATTMCEIDGRRPAVASVRIRQNGEERTIAVCEEHLRELQGQSRGAGRSPFGGRSLFDEF
Ga0307299_103564761	3300028793	Soil	MATTMCEIDGRRPAVATVRIRQNGEERTLAVCEEH
Ga0307312_111196122	3300028828	Soil	MATTMCEIDGRRPAVASVRIRQNGEERTIAVCEEHLRELQGQSRGAGRS
Ga0307289_101770071	3300028875	Soil	MATTMCEIDGRRPAVATVRIRQNGEERTLAVCEEHLRELQGQSRGVGRSPFGGRS
Ga0307497_102175771	3300031226	Soil	MATTICEIDGVRPAVATVRIRQNGEERTIAVCEEHLRELQG
Ga0307468_1014760901	3300031740	Hardwood Forest Soil	MATTICEIDGVRPAVATVRIRQNGEERTIAVCEEHLRELQAQTSAAARSPFS
Ga0307416_1037110361	3300032002	Rhizosphere	MATTMCEIDGRRPAVATVRIRQNGEERTIAVCEEHLREL
Ga0310906_105870191	3300032013	Soil	MATTICEIDGVRPAVATVRIRQNGEERTIAVCEEHLRELQGQAR
Ga0307472_1010536232	3300032205	Hardwood Forest Soil	MATTMCEIDGVRPAVATVRISQNGEERTIAVCEEHLRELQGRSRAGARSPFGGRSSLFDELFSDF
Ga0247829_102196123	3300033550	Soil	MATTMCEIDGRRPAVATVRIRQNGEERTLAVCEEHLRELQGQSR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F073524

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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