Basic Information | |
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Family ID | F073509 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 120 |
Average Sequence Length | 37 residues |
Representative Sequence | MLAQEAPLIDQGAVQFILFGVTVIVIFIALWITIAK |
Number of Associated Samples | 102 |
Number of Associated Scaffolds | 120 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 85.83 % |
% of genes near scaffold ends (potentially truncated) | 19.17 % |
% of genes from short scaffolds (< 2000 bps) | 70.83 % |
Associated GOLD sequencing projects | 93 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.53 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (81.667 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (12.500 % of family members) |
Environment Ontology (ENVO) | Unclassified (28.333 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (30.833 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46. |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Transmembrane (alpha-helical) | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 43.75% β-sheet: 0.00% Coil/Unstructured: 56.25% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.53 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Freshwater Sediment Groundwater Sediment Freshwater Sediment Hot Spring Sediment Soil Groundwater Sediment Soil Soil Vadose Zone Soil Terrestrial Soil Tropical Forest Soil Serpentine Soil Grasslands Soil Terrestrial Soil Soil Grasslands Soil Hardwood Forest Soil Soil Soil Soil Natural And Restored Wetlands Tropical Forest Soil Corn, Switchgrass And Miscanthus Rhizosphere Soil Groundwater Sand Bio-Ooze Sediment Soil Arabidopsis Rhizosphere Corn Rhizosphere Tabebuia Heterophylla Rhizosphere Switchgrass Rhizosphere Populus Rhizosphere Switchgrass Rhizosphere Switchgrass Rhizosphere Corn Rhizosphere Arabidopsis Rhizosphere |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
GPICI_01886050 | 2088090015 | Soil | MLAQEAPLIEQGAVQFILFGVTVIVIFIALWITIAK |
KansclcFeb2_03309040 | 2124908045 | Soil | MLAQEAPLIDQGAVQFILFGVTVIVIFIALWITIAK |
ICChiseqgaiiDRAFT_06825022 | 3300000033 | Soil | MLAQETRPLLDEGVVQFILFGVMMIGIFIVLWITIAK* |
C687J26616_100030518 | 3300002120 | Soil | MLAQEAVRLLDQGSVQFIVFSVMVVITFIVLWIAIAK* |
C687J26616_101741892 | 3300002120 | Soil | VLGQIEMPLIEQGSVQFILFGVMMLVIFIGLWITISK* |
C687J26657_100484692 | 3300002149 | Soil | MLAQEAARLIDQGSVQFILFGVMVLVTFIVLWYTIAK* |
Ga0066685_109982471 | 3300005180 | Soil | VLGLIAQESARPLLDQGAVQFILFGVMMIVIFIVMWLTVDK* |
Ga0066695_100174876 | 3300005553 | Soil | MLAQEARPLLDQGVVQFILFGVMMIGIFIALWITIAK* |
Ga0066698_101080342 | 3300005558 | Soil | MLAQEARPLLDQGVVQFILFGVMMIGIFIVLWITIAK* |
Ga0070664_1000074653 | 3300005564 | Corn Rhizosphere | MLAQEAPLIEQGAVQFILFGVTVIVIFIALWITIAK* |
Ga0068857_1013243312 | 3300005577 | Corn Rhizosphere | VLAQESARLIDQGAVQFILFGVMLIIVFITLWFTISK* |
Ga0068859_1022436002 | 3300005617 | Switchgrass Rhizosphere | VLAQESARLIDQGAVQFILYGVMLIIVFITLWFTISK* |
Ga0066905_1000552014 | 3300005713 | Tropical Forest Soil | MLAQETQLIDQGAVQFILFGITVIVIFIALWITIAK* |
Ga0081455_1000215426 | 3300005937 | Tabebuia Heterophylla Rhizosphere | MMLAQEAPLIDQGAVQFILFGITVIVIFIALWITIAK* |
Ga0081455_100087639 | 3300005937 | Tabebuia Heterophylla Rhizosphere | MMLAQEAPLIDQGAVQFILFGITVIIIFIALWITIAK* |
Ga0081455_101399402 | 3300005937 | Tabebuia Heterophylla Rhizosphere | MMLAQEVPLIDQGAVQFILFGITVIIIFIALWITIAK* |
Ga0075417_104654612 | 3300006049 | Populus Rhizosphere | AMMLAQEAPLIDQGAVQFILFGITVIVIFIALWITIAK* |
Ga0074048_100663082 | 3300006581 | Soil | LAQEAPLIEQGAVQFILFGVTVIVIFIALWITIAK* |
Ga0075428_1000879193 | 3300006844 | Populus Rhizosphere | MLAQEAVKLLDQGSVQFILFGIMTIVTFVILWITIAK* |
Ga0073934_1000795218 | 3300006865 | Hot Spring Sediment | MLAQEAARLLDQGSVQFILFGVMVLVVFVALWFTIAK* |
Ga0073934_100103892 | 3300006865 | Hot Spring Sediment | MLAQEAARLIDQGSVQFILFGIMVVVVFIALWFTIAK* |
Ga0066710_1003234523 | 3300009012 | Grasslands Soil | VLGLIAQESTRPLLDQGAVQFILFGVMMIVIFIVMWLTVDK |
Ga0066710_1005494112 | 3300009012 | Grasslands Soil | MIALETPLIDQGVVQFVLFGVMVLVILFALWITIAK |
Ga0066710_1017813962 | 3300009012 | Grasslands Soil | MLAMVAAHLIDSGSVQFILFGVVVIAIFVALLITIAK |
Ga0066710_1046860602 | 3300009012 | Grasslands Soil | MFATIASETGPLLDQGIVQFILFGVMMIAIFVVLWITIAK |
Ga0105098_102753332 | 3300009081 | Freshwater Sediment | MLAQETRPLLDEGAVQFILFGVMMIGIFIVLWITIAK* |
Ga0111539_118390792 | 3300009094 | Populus Rhizosphere | MMLAQEAPLIDQGAVQFILFGVTVIIIFIALWITIAK* |
Ga0066709_1032909932 | 3300009137 | Grasslands Soil | VAGVLGLIAQESTRPLLDQGAVQFILFGVMMIVIFIVMWLTVDK* |
Ga0105249_100176904 | 3300009553 | Switchgrass Rhizosphere | MLAQEAPLIEQGAVQFILFGLTVIVIFIALWITIAK* |
Ga0105252_102637192 | 3300009678 | Soil | MLAQEAVRLLDQGSVQFIVFTVMIVITFIALWISIAK* |
Ga0105079_10355831 | 3300009805 | Groundwater Sand | MLAQEAAPLIEQGAVQFILFGVTVIVIFIALWITIAK* |
Ga0105089_10675462 | 3300009809 | Groundwater Sand | MLAQETRPLLDEGVVQFILFGVMMIVIFIALWITIAK* |
Ga0105084_10141091 | 3300009811 | Groundwater Sand | MLAQEAPLIDQGAVQFILFGVTVIVIFIALWITIAK* |
Ga0105072_10825952 | 3300009818 | Groundwater Sand | MLAQEAPLIEQGAVQFILFGVTVIVIFIALWITIA |
Ga0105066_11391872 | 3300009822 | Groundwater Sand | MLAQEAPLIEQGAVQFILFGVTVIVTFIALWITIAK* |
Ga0126313_101870303 | 3300009840 | Serpentine Soil | MLAQEVPLIEQGAVQFILFGVTVIVIFIALWITIAK* |
Ga0105074_10247323 | 3300010029 | Groundwater Sand | MLAQEAPLIERGAVQFILFGVTVIVIFIALWITIAK* |
Ga0126314_100041564 | 3300010042 | Serpentine Soil | MLAAEGVRLMDVGVVQFILFGVMVLAIFITLWLTIAR* |
Ga0134071_104262221 | 3300010336 | Grasslands Soil | ETMLAQEARPLLDQGVVQFILFGVMMIGIFIVLWITIAK* |
Ga0126377_100050246 | 3300010362 | Tropical Forest Soil | MMLAQETTPLIDQGAVQFILFGITVIVIFIALWITIAK* |
Ga0134128_131485011 | 3300010373 | Terrestrial Soil | QESARLIDQGAVQFILFGVMLIIVFITLWFTISK* |
Ga0136847_1080505719 | 3300010391 | Freshwater Sediment | VLGLKLLDQGSVQFILFGVMVIVTYITLKFTSAK* |
Ga0138112_10015662 | 3300010905 | Grasslands Soil | MIGIGIPLMDQGVVQFVMFGVMVLVILFALWITIAK* |
Ga0137430_12210862 | 3300012041 | Soil | LAQEAVRLLDQGSVQFIVFTVMIVITFIALWISIAK* |
Ga0137374_103650283 | 3300012204 | Vadose Zone Soil | MLAQETRPLLDEGVVQFILFGVMMIGIFIALWITIAK* |
Ga0137374_104509242 | 3300012204 | Vadose Zone Soil | MLAQETRPLLDQGVVQFILFGVMMIGIFIVLWITIAK* |
Ga0137380_112256612 | 3300012206 | Vadose Zone Soil | MFATIASETGPLLDQGIVQFILFGVMMIAIFVVLWITIA |
Ga0137369_102874313 | 3300012355 | Vadose Zone Soil | MLAQEAPLIEQGGVQFILFGVTVIVIFIALWITIAK* |
Ga0137371_100935204 | 3300012356 | Vadose Zone Soil | MFAAIASETGPLLDQGIVQFILFGVMMIAIFVVLWITIAK* |
Ga0137375_106593922 | 3300012360 | Vadose Zone Soil | MLAQEAPLMEQGAVQFILFGVTVIVIFIALWITIAK* |
Ga0137375_111947802 | 3300012360 | Vadose Zone Soil | MLAQEARLLDQGGVQFVIFGIMVLVIFIALWFTIAK* |
Ga0157303_101199742 | 3300012896 | Soil | MLAQEAPLIEQGAVQFILFGITVIVIFIALWITIAK* |
Ga0157286_101017492 | 3300012908 | Soil | MLAQEGQLIDQGAVQFILFGITVIVIFIALWFTIAK* |
Ga0162652_1000112692 | 3300012941 | Soil | MLAQEAPLIEQGAVQFILFGVTVIVIFISLWITIAK* |
Ga0075354_11027632 | 3300014308 | Natural And Restored Wetlands | MLAQEATRLLDQGSVQFIAFGVMVIVAFIALWIAI |
Ga0075351_10587082 | 3300014318 | Natural And Restored Wetlands | MLAQEAVRLLDQGAVQFIVFGVTLVITFIALWIAIAK* |
Ga0075342_10199952 | 3300014320 | Natural And Restored Wetlands | MMIAQESVRLLDQGSVQFIVFGVMVVITFIALWIAIAK* |
Ga0075352_10076924 | 3300014324 | Natural And Restored Wetlands | MLAQEATRLLDQGSVQFIAFGVMVIVAFIALWIAIAR* |
Ga0120193_100240792 | 3300014965 | Terrestrial | MLAQEGAPLIDQGAVQFILFGIMVLVTFIVLWITIAK* |
Ga0132258_132406553 | 3300015371 | Arabidopsis Rhizosphere | MMLAQEAPLIDQGAVQFILFGATVIVIFIALWITIAK* |
Ga0132256_1000704165 | 3300015372 | Arabidopsis Rhizosphere | MMLAQEAPLIDQGAVQFILFGVTVIVIFIALWITIAK* |
Ga0184610_10011486 | 3300017997 | Groundwater Sediment | MLAQEARPLLDEGVVQFILFGVMMLVIFIALWITIAK |
Ga0184610_11414792 | 3300017997 | Groundwater Sediment | MLAQETRPLLDEGVVQFILFGVMMIGIFIVLWITIAK |
Ga0184610_13138501 | 3300017997 | Groundwater Sediment | MLAQEAAKLLDQGSVQFILFSIVVIVTFIVLWLTIAK |
Ga0184608_103444711 | 3300018028 | Groundwater Sediment | LGGTMLAQAAPLIEQGAVQFILFGVTVIVIFIALWITIAK |
Ga0184620_102849582 | 3300018051 | Groundwater Sediment | VRTRLGGTMLAQEAPLIEQGAVQFILFGVTVIVIFIALWITIAK |
Ga0184623_101828062 | 3300018056 | Groundwater Sediment | MLAQEAAKLLDQGSVQFILFSIVLIVTFIVLWLTIAK |
Ga0184615_103418462 | 3300018059 | Groundwater Sediment | MLAQEAVRLLDQGSVQFIVFTVMIVITFIALWISIAK |
Ga0184640_100422882 | 3300018074 | Groundwater Sediment | MLAQEARPLLDEGVVQFILFGVMMIVIFIALWITIAK |
Ga0184633_100801294 | 3300018077 | Groundwater Sediment | MLAQETRPLLDEGVVQFILFGVMMLVIFIALWITIAK |
Ga0184612_1000809610 | 3300018078 | Groundwater Sediment | GGTMLAQEAPLIEQGAVQFILFGVTVIVIFIALWITIAK |
Ga0184639_101067194 | 3300018082 | Groundwater Sediment | MLAQEAPLIQQGAVQFILFGVTVIVIFIALWITIAK |
Ga0066655_103823112 | 3300018431 | Grasslands Soil | MLAQEARPLLDQGGVQFILFGVMMIGLFIVLWITIAK |
Ga0190274_100418725 | 3300018476 | Soil | MLAQEVPLIEQGAVQFILFGVTVIVIFIALWITIAK |
Ga0190274_103109493 | 3300018476 | Soil | MLAQETRPLLDEGAVQFILFGVMMIGIFIVLWITIAK |
Ga0187892_100700714 | 3300019458 | Bio-Ooze | MLAQEAAKLLDQGSVQFILFSIVIIVTFIVLWFTIAK |
Ga0193697_10249293 | 3300020005 | Soil | MVRTRLGGTMLAQEAPLIEQGAVQFILFGVTVIVIFIALWITIAK |
Ga0210381_103967392 | 3300021078 | Groundwater Sediment | RLGGTMLAQEAPLIEQGAVQFILFGVTVIVIFIALWITIAK |
Ga0193736_10043961 | 3300021412 | Soil | MLAQEAAPLIEQGAVQFILFGVTVIVIFIALWFTISK |
Ga0209322_100312515 | 3300025146 | Soil | MLAQEAVRLLDQGSVQFIVFSVMVVITFIVLWIAIAK |
Ga0209322_100729602 | 3300025146 | Soil | VLGQIEMPLIEQGSVQFILFGVMMLVIFIGLWITISK |
Ga0209642_104913692 | 3300025167 | Soil | MLAQEAVRLLDQGSVQFIVFSVMVVITFIALWIAIAK |
Ga0209172_1000345729 | 3300025310 | Hot Spring Sediment | MLAQEAARLLDQGSVQFILFGVMVLVVFVALWFTIAK |
Ga0209172_100192502 | 3300025310 | Hot Spring Sediment | MLAQEAARLIDQGSVQFILFGIMVVVVFIALWFTIAK |
Ga0209431_104898332 | 3300025313 | Soil | MLAQEAVRLLDQGSVQFIVFGVMVVVTFIALWIAIAK |
Ga0209342_100668754 | 3300025326 | Soil | VIGAENVPLLEQGAVQFILFAVMVIVVFILMKITIAK |
Ga0207684_103939152 | 3300025910 | Corn, Switchgrass And Miscanthus Rhizosphere | MLAQEAPLIEQGAVQFILFGVTVIVIFIVLWITIAK |
Ga0207646_101338694 | 3300025922 | Corn, Switchgrass And Miscanthus Rhizosphere | MLAAEARLIDQGAVQFILFGVMVIAIFVALWVTIAK |
Ga0207650_102831783 | 3300025925 | Switchgrass Rhizosphere | MLAQEAPLIEQGAVQFILFGLTVIVIFIALWITIAK |
Ga0208914_10321882 | 3300026102 | Natural And Restored Wetlands | MLAQEATRLLDQGSVQFIAFGVMVIVAFIALWIAIAR |
Ga0209469_10470082 | 3300026307 | Soil | MLAQEARPLLDQGVVQFILFGVMMIGIFIALWITIAK |
Ga0209159_10439085 | 3300026343 | Soil | GGGTMLAQEARPLLDQGVVQFILFGVMMIGIFIVLWITIAK |
Ga0209058_11025121 | 3300026536 | Soil | MLAQEARPLLDQGVVQFILFGVMMIGIFIVLWITIAK |
Ga0207599_1000674 | 3300027451 | Soil | MLAQEAPLIEQGAVHFILFGVTVIVIFIALWITIAK |
Ga0209887_10175331 | 3300027561 | Groundwater Sand | MLAQEAPLIEQGAVQFILFGVTVIVTFIALWITIAK |
Ga0214468_10026045 | 3300027647 | Soil | MLAQEAAPLMEQGSVQFILFGVMVLVIFVVMWITIAK |
Ga0256865_11149361 | 3300027657 | Soil | MLAQEAAPLMEQGSVQFILFGVMVLVIFVVMWITI |
Ga0209814_102617041 | 3300027873 | Populus Rhizosphere | MMLAQEAPLIDQGAVQFILFGITVIVIFIALWITIAK |
Ga0209889_10093042 | 3300027952 | Groundwater Sand | MLAQETRPLLDQGVVQFILFGVMMIGIFIVLWITIAK |
Ga0209853_10066826 | 3300027961 | Groundwater Sand | MLAQETRPLLDEGVVQFILFGVMMIVIFIALWITIAK |
Ga0268265_112073381 | 3300028380 | Switchgrass Rhizosphere | TRLGGTMLAQEAPLIEQGAVQFILFGVTVIVIFIALWITIAK |
Ga0247822_115436092 | 3300028592 | Soil | MLAQEAPLFEQGAVQFSLFGVTVIVIFIALWITIAK |
Ga0307305_102043592 | 3300028807 | Soil | MLAQEARPLLDQGVVQFILFGVMMIVIFIVLWITIAK |
Ga0307310_102128572 | 3300028824 | Soil | MVRTRLGGPMLAQEAAPLIEQGAVQFILFGVTVIVIFIALWITIAK |
Ga0307312_100849263 | 3300028828 | Soil | MLAQQVQPLLDQGVVQFILFGVMMIVIFIVLWITIAK |
Ga0307278_104019682 | 3300028878 | Soil | VIGIEQPLLDQGIVQFILFGIMVIVVFVVMWITIAK |
Ga0299907_100001178 | 3300030006 | Soil | MLAQEGAPLIDQGAVQFILFGIMVLVTFIVLWITIAK |
Ga0299907_1000354410 | 3300030006 | Soil | MLGQESVPLIDQGAVQFILLGVLIIVVFIALWFTIAK |
Ga0299907_102769062 | 3300030006 | Soil | MLAQEAVKLLDQGSVQFILFGIMTIVTFLILWITIAK |
Ga0308194_100483832 | 3300031421 | Soil | MLAAETRLLDQGAVQFILFGVMVIGIFITLWFTIAK |
Ga0214473_101115944 | 3300031949 | Soil | MLAQEAVRLLDQGSVQFIVFGVMVVITFIALWIAIAK |
Ga0214473_101167873 | 3300031949 | Soil | MLAQEAARLLDQGSVQFIVFSVTMVITFIALWIAIAK |
Ga0214473_107562652 | 3300031949 | Soil | MLAQEAVRLLDQGSVQFIVFSVMVVITFIALWISIAK |
Ga0310906_101563321 | 3300032013 | Soil | VVRTRLGGTMLAQEAPLIEQGAVQFILFGVTVIVIFIALWITIAK |
Ga0307472_1022892872 | 3300032205 | Hardwood Forest Soil | MMLAQEAPLIDQGAVQFILFGITVIIIFIALWITIAK |
Ga0335084_102414852 | 3300033004 | Soil | MLAQEARLIDQGAVQFVIFGIMVLVIFIALWFTIAK |
Ga0214471_100623376 | 3300033417 | Soil | AQEAAPLMEQGSVQFILFGVMVLVIFVVMWITIAK |
Ga0247829_113218312 | 3300033550 | Soil | MLAQEAPLFEQGAVQFILFGVTVIVIFIALWITIAK |
Ga0364930_0054010_221_334 | 3300033814 | Sediment | MLAQQVQPLLDQGVVQFILFGVMMLVIFIALWITIAK |
Ga0364943_0159980_255_365 | 3300034354 | Sediment | MLAQEAPLIEQGAVQFILFGVTVIVIFIALWITMAK |
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