Metagenome / Metatranscriptome Family F073416

Basic Information
Family ID	F073416
Family Type	Metagenome / Metatranscriptome
Number of Sequences	120
Average Sequence Length	54 residues
Representative Sequence	MTDELQLIERLEGIRRIIHTNTDLADVILLGMIEEAEQKVARFEAEAEET
Number of Associated Samples	89
Number of Associated Scaffolds	120

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	64.17 %
% of genes near scaffold ends (potentially truncated)	20.83 %
% of genes from short scaffolds (< 2000 bps)	69.17 %
Associated GOLD sequencing projects	79
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.65

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Unclassified (38.333 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh (18.333 % of family members)
Environment Ontology (ENVO)	Unclassified (42.500 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (85.000 % of family members)

Multiple Sequence Alignments

Select alignment to view:

Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82. 1DelMOSum2010_101603342 2SI34jun09_10mDRAFT_100355920 3OpTDRAFT_100015425 4NpDRAFT_101777693 5JGI26079J46598_10201225 6JGI26081J50195_10335385 7JGI26086J50260_10069255 8JGI26246J51724_10529943 9JGI26082J51739_100918683 10Ga0075109_10981912 11Ga0075124_100585243 12Ga0070743_100156651 13Ga0070743_101097391 14Ga0070743_101207613 15Ga0075474_101231754 16Ga0075478_101078175 17Ga0098048_10472454 18Ga0098055_100387511 19Ga0098055_10334827 20Ga0098055_11202243 21Ga0098055_12426042 22Ga0075475_100303071 23Ga0098045_100878511 24Ga0070752_11887443 25Ga0070753_10622563 26Ga0102820_10228735 27Ga0102945_10037352 28Ga0102945_10090657 29Ga0102948_12116694 30Ga0102866_10993463 31Ga0102951_11130473 32Ga0075480_101085524 33Ga0102960_12482062 34Ga0102963_100402212 35Ga0102813_12931832 36Ga0102957_10195482 37Ga0102886_12056473 38Ga0115008_100648115 39Ga0115572_100770335 40Ga0115000_106675211 41Ga0098049_10161404 42Ga0098049_10308661 43Ga0136656_12953063 44Ga0181391_10764691 45Ga0181400_100974410 46Ga0187217_10166699 47Ga0187217_10275841 48Ga0187217_11882883 49Ga0181424_104726611 50Ga0181565_100332512 51Ga0181565_100988426 52Ga0181565_101300115 53Ga0181565_102283574 54Ga0181584_102555731 55Ga0181584_103660024 56Ga0181584_106102293 57Ga0181607_106698983 58Ga0181577_101329992 59Ga0181583_101841843 60Ga0181583_102696702 61Ga0181585_103997803 62Ga0181600_104609631 63Ga0181572_101186101 64Ga0181591_110610682 65Ga0180037_109176610 66Ga0182061_10333845 67Ga0182073_11886553 68Ga0181594_101922182 69Ga0181594_102133851 70Ga0206131_100549574 71Ga0211505_10224172 72Ga0211576_101618981 73Ga0211576_101754576 74Ga0211576_104971722 75Ga0206682_100957844 76Ga0213867_10157328 77Ga0213867_11294342 78Ga0213859_100460612 79Ga0213859_100703865 80Ga0213859_101041014 81Ga0213860_101456731 82Ga0213860_101982572 83Ga0213869_100708713 84Ga0213864_101812132 85Ga0213866_101112286 86Ga0222717_101631444 87Ga0222716_101098105 88Ga0222715_102668634 89Ga0222715_104124472 90Ga0222719_1000541517 91Ga0222719_100331589 92Ga0222719_104085604 93Ga0255764_102898461 94Ga0255764_104098223 95Ga0233432_1003126110 96Ga0255776_1003583813 97Ga0222634_100268615 98Ga0233444_100304358 99Ga0244775_100295261 100Ga0244775_100610849 101Ga0244775_103258434 102Ga0244775_109037564 103Ga0208792_10198515 104Ga0208793_11410192 105Ga0209654_10447553 106Ga0209654_11101323 107Ga0209136_10056112 108Ga0208428_10125148 109Ga0209659_11206943 110Ga0209251_10718322 111Ga0209652_10319101 112Ga0209653_10596383 113Ga0209953_100015226 114Ga0209953_10254913 115Ga0209955_10259631 116Ga0209929_10438996 117Ga0208897_10318851 118Ga0209092_100721057 119Ga0306872_10179514 120Ga0348336_193061_358_543
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82. 1DelMOSum2010_101603342 2OpTDRAFT_100015425 3NpDRAFT_101777693 4JGI26086J50260_10069255 5Ga0075109_10981912 6Ga0075474_101231754 7Ga0098048_10472454 8Ga0102945_10037352 9Ga0102948_12116694 10Ga0102963_100402212 11Ga0102813_12931832 12Ga0115000_106675211 13Ga0098049_10308661 14Ga0181400_100974410 15Ga0181565_101300115 16Ga0181583_101841843 17Ga0211576_104971722 18Ga0213859_101041014 19Ga0213860_101982572 20Ga0213864_101812132 21Ga0222715_104124472 22Ga0244775_100295261
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50 1Ga0209654_11101323 2DelMOSum2010_101603342 3OpTDRAFT_100015425 4JGI26086J50260_10069255 5JGI26082J51739_100918683 6Ga0075124_100585243 7Ga0070743_101097391 8Ga0098055_10334827 9Ga0098055_12426042 10Ga0102945_10037352 11Ga0102945_10090657 12Ga0102951_11130473 13Ga0102960_12482062 14Ga0115000_106675211 15Ga0181565_100332512 16Ga0181565_100988426 17Ga0181583_102696702 18Ga0181585_103997803 19Ga0181572_101186101 20Ga0180037_109176610 21Ga0182061_10333845 22Ga0211505_10224172 23Ga0211576_104971722 24Ga0213867_10157328 25Ga0213859_100460612 26Ga0213860_101982572 27Ga0213864_101812132 28Ga0222716_101098105 29Ga0222715_102668634 30Ga0222715_104124472 31Ga0222719_104085604 32Ga0209136_10056112 33Ga0209653_10596383
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Neighboring Clusters of Orthologous Genes (COGs)

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 55.13% β-sheet: 0.00% Coil/Unstructured: 44.87%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.65
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.65
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Pfam ID	Name	% Frequency in 120 Family Scaffolds
PF14090	HTH_39	15.83
PF00004	AAA	3.33
PF03796	DnaB_C	0.83
PF13155	Toprim_2	0.83
PF13392	HNH_3	0.83

COG ID	Name	Functional Category	% Frequency in 120 Family Scaffolds
COG0305	Replicative DNA helicase	Replication, recombination and repair [L]	0.83
COG1066	DNA repair protein RadA/Sms, contains AAA+ ATPase domain	Replication, recombination and repair [L]	0.83

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	61.67 %
Unclassified	root	N/A	38.33 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	28.33 %
Unclassified	root	N/A	38.33 %
Viruses	superkingdom	All Organisms → Viruses	33.33 %

Name	Rank	Taxonomy	Distribution
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	2.50 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	25.83 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	0.83 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	32.50 %
Unclassified	root	N/A	38.33 %

Name	Rank	Taxonomy	Distribution
Euryarchaeota	phylum	All Organisms → cellular organisms → Archaea → Euryarchaeota	2.50 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	1.67 %
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	0.83 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	32.50 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	9.17 %
Unclassified	root	N/A	38.33 %

Name	Rank	Taxonomy	Distribution
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	1.67 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	9.17 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	32.50 %
Unclassified	root	N/A	38.33 %
unclassified Euryarchaeota	no rank	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota	2.50 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	0.83 %

Name	Rank	Taxonomy	Distribution
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1.67 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	0.83 %
Cellvibrionales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales	7.50 %
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	2.50 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	32.50 %
Unclassified	root	N/A	38.33 %

Name	Rank	Taxonomy	Distribution
environmental samples	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples	0.83 %
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	2.50 %
Porticoccaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Porticoccaceae	7.50 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	32.50 %
Saprospiria	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria	1.67 %
Unclassified	root	N/A	38.33 %

Name	Rank	Taxonomy	Distribution
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	2.50 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	32.50 %
Saprospirales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales	1.67 %
Unclassified	root	N/A	38.33 %
unclassified Porticoccaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Porticoccaceae → unclassified Porticoccaceae	7.50 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	0.83 %

Name	Rank	Taxonomy	Distribution
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	2.50 %
Porticoccaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Porticoccaceae → unclassified Porticoccaceae → Porticoccaceae bacterium	7.50 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	32.50 %
Unclassified	root	N/A	38.33 %
unclassified Saprospirales	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales	1.67 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	0.83 %

Name	Rank	Taxonomy	Distribution
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	2.50 %
Porticoccaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Porticoccaceae → unclassified Porticoccaceae → Porticoccaceae bacterium	7.50 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	32.50 %
Saprospirales bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium	1.67 %
Unclassified	root	N/A	38.33 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	0.83 %

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
(restricted) 3300023109\|Ga0233432_10031261	Not Available	3637	Open in IMG/M
(restricted) 3300024264\|Ga0233444_10030435	Not Available	3563	Open in IMG/M
3300000101\|DelMOSum2010_c10160334	Not Available	809	Open in IMG/M
3300000224\|SI34jun09_10mDRAFT_1003559	All Organisms → cellular organisms → Bacteria	4277	Open in IMG/M
3300000928\|OpTDRAFT_10001542	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Porticoccaceae → unclassified Porticoccaceae → Porticoccaceae bacterium	886	Open in IMG/M
3300000929\|NpDRAFT_10177769	Not Available	800	Open in IMG/M
3300003216\|JGI26079J46598_1020122	All Organisms → cellular organisms → Bacteria	1727	Open in IMG/M
3300003346\|JGI26081J50195_1033538	All Organisms → cellular organisms → Bacteria	1091	Open in IMG/M
3300003410\|JGI26086J50260_1006925	Not Available	4847	Open in IMG/M
3300003592\|JGI26246J51724_1052994	Not Available	803	Open in IMG/M

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Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	87.50%
Non-Marine Saline And Alkaline	Environmental → Aquatic → Non-Marine Saline And Alkaline	12.50%

Habitat	Taxonomy	Distribution
Coastal	Environmental → Aquatic → Marine → Coastal	15.83%
Inlet	Environmental → Aquatic → Marine → Inlet	1.67%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	34.17%
Neritic Zone	Environmental → Aquatic → Marine → Neritic Zone	2.50%
Oceanic	Environmental → Aquatic → Marine → Oceanic	10.83%
Pelagic	Environmental → Aquatic → Marine → Pelagic	1.67%
Saline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline	12.50%
Strait	Environmental → Aquatic → Marine → Strait	5.00%
Unclassified	Environmental → Aquatic → Marine → Unclassified	15.83%

Habitat	Taxonomy	Distribution
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	4.17%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	18.33%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	15.83%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	15.83%
Unclassified	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified	12.50%
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	11.67%
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	10.83%
Unclassified	Environmental → Aquatic → Marine → Strait → Unclassified	5.00%
Unclassified	Environmental → Aquatic → Marine → Neritic Zone → Unclassified	2.50%
Unclassified	Environmental → Aquatic → Marine → Inlet → Unclassified	1.67%
Unclassified	Environmental → Aquatic → Marine → Pelagic → Unclassified	1.67%

Habitat	Taxonomy	Distribution
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	6.67%
Estuarine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine	6.67%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	4.17%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	5.83%
Freshwater And Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Freshwater And Marine	1.67%
Freshwater To Marine Saline Gradient	Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient	0.83%
Lake Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Lake Water	0.83%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	10.83%
Marine	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine	10.83%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	3.33%
Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine	0.83%
Pelagic Marine	Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine	0.83%
Pond Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water	6.67%
Saline Lake	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake	1.67%
Saline Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water	0.83%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	18.33%
Seawater	Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater	8.33%
Seawater	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater	5.00%
Seawater	Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater	1.67%
Seawater	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater	0.83%
Seawater	Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater	0.83%
Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Water	2.50%

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000101	Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010	Environmental	Open in IMG/M
3300000224	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 34 06/16/09 10m	Environmental	Open in IMG/M
3300000928	Marine plume microbial communities from the Columbia River - 25 PSU	Environmental	Open in IMG/M
3300000929	Marine plume microbial communities from the Columbia River - 15 PSU	Environmental	Open in IMG/M
3300003216	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_59LU_5_DNA	Environmental	Open in IMG/M
3300003346	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_74LU_5_DNA	Environmental	Open in IMG/M
3300003410	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_153SG_22_DNA	Environmental	Open in IMG/M
3300003592	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI072_LV_10m_DNA	Environmental	Open in IMG/M
3300003617	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_105LU_22_DNA	Environmental	Open in IMG/M
3300005912	Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKD	Environmental	Open in IMG/M

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Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
DelMOSum2010_101603342	3300000101	Marine	MNDELQLIERLEGIRRIIHNNTDLADVILLGMIEEAERKVAAFESQLELEYS*
SI34jun09_10mDRAFT_100355920	3300000224	Marine	MNEELQLIERLEGLRRIVHTNTDLADVILLGMIEEAERKVEAFESQIELEFA*
OpTDRAFT_100015425	3300000928	Freshwater And Marine	MNDELQLIDRLEGIRRILHTNTDLADVILLGMIEETEQKVNAFEHSYELEMDDGA*
NpDRAFT_101777693	3300000929	Freshwater And Marine	MTDELQLIERLEGARRILATNPGLADTVLLAMIEEAQRKVAAFEAQAEKELF*
JGI26079J46598_10201225	3300003216	Marine	MGEVMNDELQLIDRLEGIRRILHTNTDLADVILLGMIEETEQKVNAFEHSYELEMDDGA*
JGI26081J50195_10335385	3300003346	Marine	MNDELQLIDRLEGIRRILHTNTDLADVILLGMIEEAEQKVSTFEHTFELEMDDGA*
JGI26086J50260_10069255	3300003410	Marine	MTDELQLIERLQGVRRIINEQPHLADLVLLGMIEEAEQKVARFEKDMQEDLFENLPV*
JGI26246J51724_10529943	3300003592	Marine	MGEVMNDELQLIDRLEGIRRILHTNTDLADVILLGMIEEAEQKVSAFEHTFELEMDDGA*
JGI26082J51739_100918683	3300003617	Marine	MGEVMNDELQLIDRLEGIRRILHTNTDLADVILLGMIEEAEQKVSTFEHTFELEMDDGA*
Ga0075109_10981912	3300005912	Saline Lake	MIDELKLIERLEGVRRILKTTPDLADVILLGMIEEAEQKVDQFELQAGMNA*
Ga0075124_100585243	3300005936	Lake Water	MIDELKLIERLEGVRRILKTTPDLADVILLGMIEEAEQKVDQFELELQAGMNA*
Ga0070743_100156651	3300005941	Estuarine	MNDELQLIDRLEGIRRILHTNTDLADVILLGMIEEAEQKVSTFEHTFEYEMDDGA*
Ga0070743_101097391	3300005941	Estuarine	MTDELQLIERLEGARRILTTNPGLADTVLLAMIEEAQRKVAAFEAQAEKELF*
Ga0070743_101207613	3300005941	Estuarine	MNDELQLIERLEGIRRILHTNTDLADVILLGMIEETEQKVNAFEHSYELEMDDGA*
Ga0075474_101231754	3300006025	Aqueous	MVDELQLIERLNGLRAILKTNTDLADVILLGMIEEAEQKVARFERDMATEDMFDNVPV*
Ga0075478_101078175	3300006026	Aqueous	MVDELQLIERLNGLRAILKTNTDLADVILLGMIEEAEQKVARFEKQMQEDMFDNVPV*
Ga0098048_10472454	3300006752	Marine	MINELQLIERLASVRRILNTNTALADTILLSMIEEAERKVADFEREHEEELI*
Ga0098055_100387511	3300006793	Marine	MNDELQLIERLEGIRRIIHTNTDLADVILLGMIEEAERKVAAFESQLELEYS*
Ga0098055_10334827	3300006793	Marine	MIDELQLIERLASVRRILNTNTALADTILLSMIEEAERKVADFEREHEEELI*
Ga0098055_11202243	3300006793	Marine	MNDELQLIERLEGIRRIIHNNTDLADVILLGMIEEAERKVAAFE
Ga0098055_12426042	3300006793	Marine	MNDELQLIERLEGIRRIIHNNTDLADVILLGMIEEAEQKVAQFEEENVPS*
Ga0075475_100303071	3300006874	Aqueous	DELQLIERLNGLRAILKTNTDLADVILLGMIEEAEQKVAHFEKQMQEDMFDNVPV*
Ga0098045_100878511	3300006922	Marine	MNDELQLIERLEGIRRIIHNNTDLADVILLGMIEEAERKVAAFESQIELEYS*
Ga0070752_11887443	3300007345	Aqueous	MVDELQLIERLNGLRAILKTNTDLADVILLGMIEEAEQKVAQFERDMQEDMFDNVPV*
Ga0070753_10622563	3300007346	Aqueous	MGEVMVDELQLIERLNGLRAILKTNTDLADVILLGMIEEAEQKVAHFEKQMQEDMFDNVPV*
Ga0102820_10228735	3300007554	Estuarine	MNDELQLIERLEGIRRIIHNNTDLADVILLGMIEEAERKVAAFESQL
Ga0102945_10037352	3300007609	Pond Water	MTDELQLIERLEGVRRIIATQPELADIVLLGMIEEAEQKIARFENAMQQEEVA*
Ga0102945_10090657	3300007609	Pond Water	MTDELQLIERLEGVRRILATQPELADIVLLGMIEEAEQKIARFESEMHSEEFA*
Ga0102948_12116694	3300007623	Water	MGAVMNDELQLIERLEGVRRIVNEQPHLADVILLGMIEEAEQKVARFEEEAEKTFTGIQEELAYYGS*
Ga0102866_10993463	3300007661	Estuarine	MNEELQLIERLEGLRRIVHTNTDLADVILLGMIEEAERKVEAFESQ
Ga0102951_11130473	3300007725	Water	MGAVMNDELQLIERLEGVRRIVNEQPHLADVILLGMIEEAEQKVARFERDMQEEFAFHGS
Ga0075480_101085524	3300008012	Aqueous	MVDELQLIERLNGLRAILKTNTDLADVILLGMIEEAEQKVAHFEKQMQEDMFDNVPV*
Ga0102960_12482062	3300009000	Pond Water	MTDELQLIERLEGVRRIIHNNTDLADVILLGMIEEAEQKVARFESDMQEEFAFNGS*
Ga0102963_100402212	3300009001	Pond Water	MNDELQLIERLEGVRRIIHNNTDLADVILLGMIEEAEQKVARFEAEAEKTFTGIQEELAYYGS*
Ga0102813_12931832	3300009003	Estuarine	MNEELQLIERLEGLRRIVHTNTDLADVILLGMIEEAERK
Ga0102957_10195482	3300009027	Pond Water	MGEVMVDELQLIERLNGLRAILKTNTDLADVILLGMIEEAEQKVARFEKQMQEDMFDNVPV*
Ga0102886_12056473	3300009052	Estuarine	MTDELQLIERLDGARRILTTNPGLADTVLLAMIEEAQRKVAAFEAQAEKELF*
Ga0115008_100648115	3300009436	Marine	MNDELQLIDRLEGIRRILHTNTDLADVILLGMIEEAEQKVSAFEHTFELEMDDGA*
Ga0115572_100770335	3300009507	Pelagic Marine	MTDELQLIERLEGARRILTTNPDLADVVLLAMIEEAERKVAAFEAQAEKELF*
Ga0115000_106675211	3300009705	Marine	MNDELQLIERLEGIRRILHTNTDLADVVLLGMIEEAEQKVNAFEHTFELEAGVREMDVE
Ga0098049_10161404	3300010149	Marine	MNDELQLIERLEGIRRIIHNNTDLADVILLGMIEEAERKVAAFESKIELEYS*
Ga0098049_10308661	3300010149	Marine	MIDELQLIERLASVRRILNTNTALADTILLSMIEAAER
Ga0136656_12953063	3300010318	Freshwater To Marine Saline Gradient	MTDELQLIERLNGVRRILKTNTDLADVILLGMIEEAE
Ga0181391_10764691	3300017713	Seawater	MNDELQLIERLEGLRRIIHTNTDLADVIVLGMIEEAERKVAAFESQIELE
Ga0181400_100974410	3300017752	Seawater	MVDQLQLIERLEGVRRIIHNNTDLADVILLGMIEEAEQKVAQFESDIQEEFAFSGS
Ga0187217_10166699	3300017770	Seawater	MNDELQLIERLEGLRRIIHTNTDLADVIVLGMIEEAERKVAAFESQ
Ga0187217_10275841	3300017770	Seawater	QLIERLEGLRRIIHTNTDLADVIVLGMIEEAERKVAAFESQIELEYS
Ga0187217_11882883	3300017770	Seawater	MNDEIQLIERLEGLRRIIHTNTDLADVIVLGMIEEAERKVAAFESQ
Ga0181424_104726611	3300017786	Seawater	MNDELQLIERLEGIRRIIHNNTDLADVILLGMIEEAERKVAAFESQIELEYS
Ga0181565_100332512	3300017818	Salt Marsh	MTDELQLIERLEGVRRILPTNPDLADVILLGMIEEAEQKVARFETDMQEDLFENVPV
Ga0181565_100988426	3300017818	Salt Marsh	MVDEIQLIERLNGLRAILKTQPDLADMIVLGMIDEAEQKVARFEAAHEQEDLFDNVPV
Ga0181565_101300115	3300017818	Salt Marsh	MVDELQLIERLEGVRAILKTQPHLADVILLGMIEEAEQKVAQFERDMQEETFN
Ga0181565_102283574	3300017818	Salt Marsh	MNDELQLIERLEGVRRIIHNNTELADVILLGMIEEAEQKVAAFEKEAEATFDSMQKEFTFYGS
Ga0181584_102555731	3300017949	Salt Marsh	MTDELQLIERLNGVRRILKTNTDLADVILLGMIEEAEQKVA
Ga0181584_103660024	3300017949	Salt Marsh	MVDELQLIERLNGLRAILKTNTDLADVILLGMIEEAEQKVARFEKQMQEDMFDNVPV
Ga0181584_106102293	3300017949	Salt Marsh	MVDELQLIERLEGVRRIIHNNTDLADVILLGMIEEAEQKVARFEAEAEKTFDGIQEELAFNGT
Ga0181607_106698983	3300017950	Salt Marsh	MNDELQLIERLEGVRRIIHNNTELADVILLGMIEEAEQKVAAFEKE
Ga0181577_101329992	3300017951	Salt Marsh	MVDELQLIERLEGVRAILKTQPHLADVILLGMIEEAEQKVARFERDMQEETFN
Ga0181583_101841843	3300017952	Salt Marsh	MTDELQLIERLNGVRRILKTNTDLADVILLGMIEEAEQKVARYEREAEATFASMQKELFD
Ga0181583_102696702	3300017952	Salt Marsh	MGEVMVDELQLIERLNGLRAILKTNTDLADVILLGMIEEAEQKVARFEKQMQEDMFDNVP
Ga0181585_103997803	3300017969	Salt Marsh	MNDELQLIERLEGIRRIIHNNTELADVILLGMIEEAEQKVAAFEKEAEATFDSMQKEFTFYGS
Ga0181600_104609631	3300018036	Salt Marsh	MNNELQLIERLEGVRRIIHNNTELADVILLGMIEEAEQKVAAFEKEAEATFDSMQKEFTFYGS
Ga0181572_101186101	3300018049	Salt Marsh	MVDELQLIERLEGVRAILKTQPHLADVILLGMIEEAEQKVAQFERDMQEET
Ga0181591_110610682	3300018424	Salt Marsh	MNDELQLIERLEGVRRIIHNNTDLADVILLGMIEEAEQKVARFEAEAEKTFDGIQEELAYYGS
Ga0180037_109176610	3300019214	Estuarine	MNEELQLIERLEGLRRIVHTNTDLADVILLGMIEEAERKVEAFESQIELEFA
Ga0182061_10333845	3300019266	Salt Marsh	MTDELQLIERLNGVRRILKTNTDLADVILLGMIEEAEQEVARYEREAEATFASMQKELFD
Ga0182073_11886553	3300019274	Salt Marsh	MGEVMVDELQLIERLNGLRAILKTNTDLADVILLGMIEEAEQKVARFEKQMQEDMFDNLP
Ga0181594_101922182	3300020054	Salt Marsh	MVDELQLIERLEGVRAILKTQPHLADVILLGMIEEAEQKVAQFEREQEETFN
Ga0181594_102133851	3300020054	Salt Marsh	MTDELQLIERLNGVRRILKTNTDLADVILLGMIEEAEQ
Ga0206131_100549574	3300020185	Seawater	MTDELQLIERLEGARRILTTNPDLADVVLLAMIEEAERKVAAFEAQAEKELF
Ga0211505_10224172	3300020352	Marine	MTDELQLIERLQGVRRILNTNTDLADTVLLAMIEEAERKVADFEREHEEELI
Ga0211576_101618981	3300020438	Marine	MTDELQLIERLEGARRILATNPGLADTVLLAMIEEAQRKVAAFEAQAEKELF
Ga0211576_101754576	3300020438	Marine	MNEELQLIERLEGLRRIVHTNTDLADVILLGMIEEAERKVEAFESQIELEFV
Ga0211576_104971722	3300020438	Marine	MVEELQLIDRLNRVRGIIHNNTDLADVILLGMIEEAEQKVASFEAQAEKEFSQ
Ga0206682_100957844	3300021185	Seawater	MNDELQLIERLEGLRRIIHTNTDLADVIVLGMIEEAERKVAAFESQIELEYS
Ga0213867_10157328	3300021335	Seawater	MVDELQLIERLNGLRAILKTNTDLADVILLGMIEEAEQKIARFEQEQEEFAFHGS
Ga0213867_11294342	3300021335	Seawater	MVDELQLIERLEGIRRIIHTNTDLADVILLGMIEEAEQKVAAFEKEAEATFDSMQKEFAFYGS
Ga0213859_100460612	3300021364	Seawater	MTDELQLIDRLERVRRILHTNTDLADVVLLGMIEEAEQKVARFESDMQEEFAFTGS
Ga0213859_100703865	3300021364	Seawater	MVDELQLIERLEGIRRIIHNNTDLADVILLGMIEEAEQKVAAFEKEAEATFDSMQKEFAFYGS
Ga0213859_101041014	3300021364	Seawater	MGEVMVDELQLIERLNGLRAILKTNTDLADVILLGMIEEAEQKIARFEQEHDQEEFAFHG
Ga0213860_101456731	3300021368	Seawater	MVDELQLIERLEGIRRIIHNNTELADVILLGMIEEAEQKVAAFEKEA
Ga0213860_101982572	3300021368	Seawater	MVDELQLIDRLERVRRIIKNSPDLAEVILLGMIEEAEQKVAQFESEMEGDVA
Ga0213869_100708713	3300021375	Seawater	MNDELQLIERLEGIRRIIHNNTDLADVILLGMIEEAERKVAAFESQLELEYS
Ga0213864_101812132	3300021379	Seawater	MVEELKLIERLEGLRRVLKSGNKDLVDVILLGMIEEQEQKVAEFEAQYDEEMA
Ga0213866_101112286	3300021425	Seawater	MVDELQLIERLEGIRRIIHNNTDLADVILLGMIEEAEQKVARFEAEAEKTFDGIQEELAYYGS
Ga0222717_101631444	3300021957	Estuarine Water	MNDELQLIERLEGVRRIIHNNTDLADVILLGMIEEAEQKVARFEAEAEKTFTGIQEELAYYGS
Ga0222716_101098105	3300021959	Estuarine Water	MVDELQLIERLEGVRRIIHNNTDLADVILLGMIEEAEQKVARFEQQVQEDLFDNVPV
Ga0222715_102668634	3300021960	Estuarine Water	MNDELQLIERLNGVRAILHSQPHLADVILLGMIEEAEQKVARFERDMATEDMFDNVPV
Ga0222715_104124472	3300021960	Estuarine Water	MNDKLQLISRLEGVRRIIHTNTDLADVVLLGMIEEAEQEVTQFENQMQEEFEFNGS
Ga0222719_1000541517	3300021964	Estuarine Water	MNDELQLIERLEGVRRIVNEQPHLADVILLGMIEEAEQKVARFERDMQEEFAFHGS
Ga0222719_100331589	3300021964	Estuarine Water	MTDELQLIERLEGVRRIIHNNTDLADVILLGMIEEAEQKVARFESDMQEEFAFNGS
Ga0222719_104085604	3300021964	Estuarine Water	MNDELQLIERLEGIRRIIHTNTDLADVILLGMIEEAEQKIARFELEHAEQEEFAQ
Ga0255764_102898461	3300023081	Salt Marsh	FNVSQCEALMTDELQLIERLNGVRRILKTNTDLADVILLGMIEEAEQKVARYEREAEATFASMQKELFD
Ga0255764_104098223	3300023081	Salt Marsh	MTDELQLIERLNGVRRILKTNTDLADVILLGMIEEA
(restricted) Ga0233432_1003126110	3300023109	Seawater	MTDELQLIERLEGARRILTTNPGLADTVLLAMIEEAQRKVAAFEAQAEKELF
Ga0255776_1003583813	3300023173	Salt Marsh	LQLIERLEGVRAILKTQPHLADVILLGMIEEAEQKVAQFERDMQEETFN
Ga0222634_100268615	3300023235	Saline Water	MIDELKLIERLEGVRRILKTTPDLADVILLGMIEEAEQKVDQFELQAGMNA
(restricted) Ga0233444_100304358	3300024264	Seawater	MTDELQLIERLESARRILTTNPGLADTVLLAMIEEAQRKVAAFEAQAEKELF
Ga0244775_100295261	3300024346	Estuarine	MGEVMNDELQLIDRLEGIRRILHTNTDLADVILLGMIEEA
Ga0244775_100610849	3300024346	Estuarine	MNDELQLIDRLEGIRRILHTNTDLADVILLGMIEETEQKVNAFEHSYELEMDDGA
Ga0244775_103258434	3300024346	Estuarine	MNDELQLIERLEGIRRILHTNTDLADVILLGMIEETEQKVNAFEHSYELEMDDGA
Ga0244775_109037564	3300024346	Estuarine	MGEVMNDELQLIDRLEGIRRILHTNTDLADVILLGMIEEAEQKVSTFEHTFEYEMDDGA
Ga0208792_10198515	3300025085	Marine	MNDELQLIERLEGIRRIIHTNTDLADVILLGMIEEAERKVAAFESQLELEYS
Ga0208793_11410192	3300025108	Marine	MNDELQLIERLEGIRRIIHNNTDLADVILLGMIEEAEQKVAQFEEENVPS
Ga0209654_10447553	3300025608	Marine	MTDELQLIERLQGVRRIINEQPHLADLVLLGMIEEAEQKVARFEKDMQEDLFENLPV
Ga0209654_11101323	3300025608	Marine	MTDELQLIERLEGIRRIIHTNTDLADVILLGMIEEAEQKVARFEAEAEET
Ga0209136_10056112	3300025636	Marine	MTDELQLIERLEGVRRIINQQPHLADVILLGMIEEAEQKIAQFEKTMQEDFFDNVPV
Ga0208428_10125148	3300025653	Aqueous	MVDELQLIERLNGLRAILKTNTDLADVILLGMIEEAEQKVAQFERDMQEDMFDNVPV
Ga0209659_11206943	3300025658	Marine	MGEVMNDELQLIDRLEGIRRILHTNTDLADVILLGMIEEAEQKVSAFEHTFELEMDDGA
Ga0209251_10718322	3300025668	Marine	MGEVMNDELQLIDRLEGIRRILHTNTDLADVILLGMIEETEQKVNAFEHSYELEMDDGA
Ga0209652_10319101	3300025684	Marine	MNEELQLIERLEGLRRIVHTNTDLADVILLGMIEEAERKVEAFESQIE
Ga0209653_10596383	3300025695	Marine	MVDELQLIERLEGVRRILHNNTDLADVILLGMIEEAEQKVARFEQEAEATFTSMHKEMTA
Ga0209953_100015226	3300026097	Pond Water	MTDELQLIERLEGVRRIIATQPELADIVLLGMIEEAEQKIARFENAMQQEEVA
Ga0209953_10254913	3300026097	Pond Water	MTDELQLIERLEGVRRILATQPELADIVLLGMIEEAEQKIARFESEMHSEEFA
Ga0209955_10259631	3300026123	Water	MVDELQLIERLNGLRAILKTNTDLADVILLGMIEEAEQKVARFEKQM
Ga0209929_10438996	3300026187	Pond Water	MNDELQLIERLEGVRRIIHNNTDLADVILLGMIEEAE
Ga0208897_10318851	3300027571	Estuarine	MNDELQLIDRLEGIRRILHTNTDLADVILLGMIEEAEQKVSTFEHTFEYEMDDGA
Ga0209092_100721057	3300027833	Marine	MNEELQLIERLEGLRRILHTNTDLADVILLGMIEEAERKVEAFESQIELEFA
Ga0306872_10179514	3300028361	Saline Lake	MIDELKLIERLEGVRRILKTTPDLADVILLGMIEEAEQKVDQFELELQAGMNA
Ga0348336_193061_358_543	3300034375	Aqueous	MGEVMVDELQLIERLNGLRAILKTNTDLADVILLGMIEEAEQKVAQFERDMQEDMFDNVP

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters