Metagenome / Metatranscriptome Family F073389

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F073389
Family Type	Metagenome / Metatranscriptome
Number of Sequences	120
Average Sequence Length	66 residues
Representative Sequence	MSKSTPVDLALGILDHQLVDADGRNCGKVDELELGGLDRGTPQVAEILVGGNAWRTRGLLGRLAA
Number of Associated Samples	106
Number of Associated Scaffolds	120

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	100.00 %
% of genes near scaffold ends (potentially truncated)	97.50 %
% of genes from short scaffolds (< 2000 bps)	95.83 %
Associated GOLD sequencing projects	104
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.30

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (98.333 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (20.833 % of family members)
Environment Ontology (ENVO)	Unclassified (30.833 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (47.500 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 16.13% β-sheet: 7.53% Coil/Unstructured: 76.34%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.30
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.30
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 120 Family Scaffolds
PF01566	Nramp	85.00
PF02810	SEC-C	0.83
PF10215	Ost4	0.83
PF00581	Rhodanese	0.83
PF05239	PRC	0.83
PF00005	ABC_tran	0.83

COG ID	Name	Functional Category	% Frequency in 120 Family Scaffolds
COG1914	Mn2+ or Fe2+ transporter, NRAMP family	Inorganic ion transport and metabolism [P]	85.00

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	98.33 %
Unclassified	root	N/A	1.67 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	98.33 %
Unclassified	root	N/A	1.67 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	98.33 %
Unclassified	root	N/A	1.67 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	65.83 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	10.00 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	3.33 %
Unclassified	root	N/A	1.67 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	26.67 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	7.50 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4.17 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	3.33 %
Unclassified	root	N/A	1.67 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	26.67 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	7.50 %
Sphingomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	4.17 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.33 %
Unclassified	root	N/A	1.67 %

Name	Rank	Taxonomy	Distribution
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	25.00 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	7.50 %
Sphingomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	4.17 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.33 %
Unclassified	root	N/A	1.67 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.83 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	25.00 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	7.50 %
Sphingomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	4.17 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.33 %
Unclassified	root	N/A	1.67 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.83 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	25.00 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	7.50 %
unclassified Sphingomonas	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas	4.17 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.33 %
Unclassified	root	N/A	1.67 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.83 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	25.00 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	7.50 %
Sphingomonas sp. URHD0007	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0007	4.17 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.33 %
Unclassified	root	N/A	1.67 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.83 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2124908041\|P3_CLC_ConsensusfromContig94808	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	899	Open in IMG/M
3300000886\|AL3A1W_1133186	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	574	Open in IMG/M
3300000887\|AL16A1W_10353963	All Organisms → cellular organisms → Bacteria → Terrabacteria group	511	Open in IMG/M
3300000953\|JGI11615J12901_10249344	All Organisms → cellular organisms → Bacteria → Terrabacteria group	669	Open in IMG/M
3300000956\|JGI10216J12902_110859092	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1058	Open in IMG/M
3300001870\|JGI24129J20441_1091176	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	569	Open in IMG/M
3300002538\|JGI24132J36420_10025315	All Organisms → cellular organisms → Bacteria → Proteobacteria	2165	Open in IMG/M
3300004114\|Ga0062593_100223906	All Organisms → cellular organisms → Bacteria → Proteobacteria	1525	Open in IMG/M
3300004114\|Ga0062593_103295807	All Organisms → cellular organisms → Bacteria → Terrabacteria group	518	Open in IMG/M
3300004156\|Ga0062589_102915483	All Organisms → cellular organisms → Bacteria	500	Open in IMG/M
3300005172\|Ga0066683_10104814	All Organisms → cellular organisms → Bacteria	1717	Open in IMG/M
3300005178\|Ga0066688_10069256	All Organisms → cellular organisms → Bacteria	2090	Open in IMG/M
3300005341\|Ga0070691_10620029	All Organisms → cellular organisms → Bacteria → Proteobacteria	641	Open in IMG/M
3300005356\|Ga0070674_100176801	All Organisms → cellular organisms → Bacteria → Proteobacteria	1631	Open in IMG/M
3300005437\|Ga0070710_10024067	All Organisms → cellular organisms → Bacteria	3208	Open in IMG/M
3300005440\|Ga0070705_100123943	All Organisms → cellular organisms → Bacteria	1673	Open in IMG/M
3300005456\|Ga0070678_100169966	All Organisms → cellular organisms → Bacteria → Proteobacteria	1774	Open in IMG/M
3300005536\|Ga0070697_101456843	All Organisms → cellular organisms → Bacteria	612	Open in IMG/M
3300005539\|Ga0068853_101450796	All Organisms → cellular organisms → Bacteria	664	Open in IMG/M
3300005540\|Ga0066697_10219987	All Organisms → cellular organisms → Bacteria	1128	Open in IMG/M
3300005544\|Ga0070686_100231436	All Organisms → cellular organisms → Bacteria → Proteobacteria	1341	Open in IMG/M
3300005545\|Ga0070695_101391565	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0007	581	Open in IMG/M
3300005546\|Ga0070696_100289241	All Organisms → cellular organisms → Bacteria → Proteobacteria	1251	Open in IMG/M
3300005547\|Ga0070693_100429019	All Organisms → cellular organisms → Bacteria	923	Open in IMG/M
3300005549\|Ga0070704_100638012	All Organisms → cellular organisms → Bacteria	939	Open in IMG/M
3300005549\|Ga0070704_101478092	All Organisms → cellular organisms → Bacteria	625	Open in IMG/M
3300005556\|Ga0066707_10506808	All Organisms → cellular organisms → Bacteria	783	Open in IMG/M
3300005563\|Ga0068855_100855066	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0007	964	Open in IMG/M
3300005587\|Ga0066654_10543804	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0007	639	Open in IMG/M
3300005615\|Ga0070702_100979845	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0007	668	Open in IMG/M
3300005718\|Ga0068866_10083678	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1720	Open in IMG/M
3300005844\|Ga0068862_100675173	All Organisms → cellular organisms → Bacteria	999	Open in IMG/M
3300006755\|Ga0079222_11553550	All Organisms → cellular organisms → Bacteria → Terrabacteria group	624	Open in IMG/M
3300006796\|Ga0066665_10799332	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0007	744	Open in IMG/M
3300006871\|Ga0075434_100638555	All Organisms → cellular organisms → Bacteria	1083	Open in IMG/M
3300006881\|Ga0068865_101076915	All Organisms → cellular organisms → Bacteria	707	Open in IMG/M
3300009098\|Ga0105245_11367134	All Organisms → cellular organisms → Bacteria → Terrabacteria group	758	Open in IMG/M
3300009177\|Ga0105248_11387217	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	795	Open in IMG/M
3300009553\|Ga0105249_10507203	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1252	Open in IMG/M
3300009553\|Ga0105249_13199623	All Organisms → cellular organisms → Bacteria → Terrabacteria group	526	Open in IMG/M
3300010045\|Ga0126311_10641685	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	844	Open in IMG/M
3300010045\|Ga0126311_11512567	All Organisms → cellular organisms → Bacteria → Terrabacteria group	563	Open in IMG/M
3300010147\|Ga0126319_1155658	All Organisms → cellular organisms → Bacteria → Terrabacteria group	512	Open in IMG/M
3300010320\|Ga0134109_10344897	All Organisms → cellular organisms → Bacteria → Terrabacteria group	584	Open in IMG/M
3300010371\|Ga0134125_12961558	All Organisms → cellular organisms → Bacteria → Terrabacteria group	515	Open in IMG/M
3300010375\|Ga0105239_11658184	All Organisms → cellular organisms → Bacteria	740	Open in IMG/M
3300011991\|Ga0120153_1039199	Not Available	922	Open in IMG/M
3300011992\|Ga0120146_1038317	All Organisms → cellular organisms → Bacteria → Terrabacteria group	823	Open in IMG/M
3300011997\|Ga0120162_1106357	All Organisms → cellular organisms → Bacteria → Terrabacteria group	586	Open in IMG/M
3300012011\|Ga0120152_1049376	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1362	Open in IMG/M
3300012011\|Ga0120152_1144848	All Organisms → cellular organisms → Bacteria → Terrabacteria group	633	Open in IMG/M
3300012014\|Ga0120159_1195801	All Organisms → cellular organisms → Bacteria → Terrabacteria group	541	Open in IMG/M
3300012198\|Ga0137364_11045656	All Organisms → cellular organisms → Bacteria → Terrabacteria group	616	Open in IMG/M
3300012206\|Ga0137380_10459115	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1126	Open in IMG/M
3300012211\|Ga0137377_11748971	All Organisms → cellular organisms → Bacteria → Terrabacteria group	542	Open in IMG/M
3300012354\|Ga0137366_11012512	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	577	Open in IMG/M
3300012358\|Ga0137368_10919927	All Organisms → cellular organisms → Bacteria	531	Open in IMG/M
3300012896\|Ga0157303_10251568	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	539	Open in IMG/M
3300012957\|Ga0164303_11060211	All Organisms → cellular organisms → Bacteria → Terrabacteria group	582	Open in IMG/M
3300012957\|Ga0164303_11117451	All Organisms → cellular organisms → Bacteria → Terrabacteria group	570	Open in IMG/M
3300012958\|Ga0164299_10049235	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1959	Open in IMG/M
3300012958\|Ga0164299_11527926	All Organisms → cellular organisms → Bacteria	522	Open in IMG/M
3300012961\|Ga0164302_11490036	All Organisms → cellular organisms → Bacteria → Terrabacteria group	557	Open in IMG/M
3300012976\|Ga0134076_10269871	All Organisms → cellular organisms → Bacteria → Terrabacteria group	730	Open in IMG/M
3300013297\|Ga0157378_10655941	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1065	Open in IMG/M
3300013306\|Ga0163162_12257750	All Organisms → cellular organisms → Bacteria → Terrabacteria group	625	Open in IMG/M
3300013306\|Ga0163162_12596045	All Organisms → cellular organisms → Bacteria → Terrabacteria group	583	Open in IMG/M
3300013768\|Ga0120155_1011254	All Organisms → cellular organisms → Bacteria	3148	Open in IMG/M
3300014502\|Ga0182021_13395349	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	530	Open in IMG/M
3300014968\|Ga0157379_12002246	All Organisms → cellular organisms → Bacteria → Terrabacteria group	572	Open in IMG/M
3300015199\|Ga0167647_1110292	All Organisms → cellular organisms → Bacteria → Terrabacteria group	668	Open in IMG/M
3300015372\|Ga0132256_101023570	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	941	Open in IMG/M
3300015372\|Ga0132256_101967496	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	691	Open in IMG/M
3300015374\|Ga0132255_106150337	All Organisms → cellular organisms → Bacteria → Terrabacteria group	508	Open in IMG/M
3300018066\|Ga0184617_1249304	All Organisms → cellular organisms → Bacteria → Terrabacteria group	532	Open in IMG/M
3300018468\|Ga0066662_10289659	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1367	Open in IMG/M
3300019873\|Ga0193700_1055073	All Organisms → cellular organisms → Bacteria	619	Open in IMG/M
3300021080\|Ga0210382_10346068	All Organisms → cellular organisms → Bacteria	656	Open in IMG/M
3300025481\|Ga0208079_1089864	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	586	Open in IMG/M
3300025857\|Ga0209014_10284070	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	535	Open in IMG/M
3300025901\|Ga0207688_10129582	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1478	Open in IMG/M
3300025910\|Ga0207684_10659363	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	891	Open in IMG/M
3300025912\|Ga0207707_10937327	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	714	Open in IMG/M
3300025916\|Ga0207663_11179466	All Organisms → cellular organisms → Bacteria → Terrabacteria group	616	Open in IMG/M
3300025927\|Ga0207687_10386443	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1148	Open in IMG/M
3300025931\|Ga0207644_11657274	All Organisms → cellular organisms → Bacteria → Terrabacteria group	536	Open in IMG/M
3300025932\|Ga0207690_11418553	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	581	Open in IMG/M
3300025937\|Ga0207669_10863569	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	754	Open in IMG/M
3300025942\|Ga0207689_10608769	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	919	Open in IMG/M
3300025960\|Ga0207651_10817863	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	827	Open in IMG/M
3300025981\|Ga0207640_10729891	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	852	Open in IMG/M
3300026023\|Ga0207677_10659535	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	924	Open in IMG/M
3300026075\|Ga0207708_11984322	All Organisms → cellular organisms → Bacteria → Terrabacteria group	510	Open in IMG/M
3300026088\|Ga0207641_11211918	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	755	Open in IMG/M
3300026142\|Ga0207698_10798537	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	946	Open in IMG/M
3300028381\|Ga0268264_12111276	All Organisms → cellular organisms → Bacteria → Terrabacteria group	572	Open in IMG/M
3300028587\|Ga0247828_11245546	All Organisms → cellular organisms → Bacteria → Terrabacteria group	501	Open in IMG/M
3300028710\|Ga0307322_10102246	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	738	Open in IMG/M
3300028714\|Ga0307309_10129038	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	625	Open in IMG/M
3300028717\|Ga0307298_10018210	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1805	Open in IMG/M
3300028719\|Ga0307301_10115497	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	856	Open in IMG/M
3300028720\|Ga0307317_10065418	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1181	Open in IMG/M
3300028720\|Ga0307317_10152352	All Organisms → cellular organisms → Bacteria	776	Open in IMG/M
3300028720\|Ga0307317_10311499	All Organisms → cellular organisms → Bacteria → Terrabacteria group	532	Open in IMG/M
3300028799\|Ga0307284_10205671	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	774	Open in IMG/M
3300028799\|Ga0307284_10430745	All Organisms → cellular organisms → Bacteria → Terrabacteria group	538	Open in IMG/M
3300028807\|Ga0307305_10250951	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	808	Open in IMG/M
3300028811\|Ga0307292_10114783	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1068	Open in IMG/M
3300028811\|Ga0307292_10146681	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	951	Open in IMG/M
3300028828\|Ga0307312_10267298	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1109	Open in IMG/M
3300028828\|Ga0307312_10343776	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	975	Open in IMG/M
3300028876\|Ga0307286_10323427	All Organisms → cellular organisms → Bacteria	572	Open in IMG/M
3300028878\|Ga0307278_10459582	All Organisms → cellular organisms → Bacteria → Terrabacteria group	557	Open in IMG/M
3300030336\|Ga0247826_10588231	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	852	Open in IMG/M
3300031082\|Ga0308192_1077242	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	538	Open in IMG/M
3300031092\|Ga0308204_10331450	All Organisms → cellular organisms → Bacteria → Terrabacteria group	518	Open in IMG/M
3300031720\|Ga0307469_11335612	All Organisms → cellular organisms → Bacteria → Terrabacteria group	682	Open in IMG/M
3300032002\|Ga0307416_100157380	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2094	Open in IMG/M
3300032205\|Ga0307472_100778286	Not Available	871	Open in IMG/M
3300034268\|Ga0372943_0553043	All Organisms → cellular organisms → Bacteria → Terrabacteria group	753	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	72.50%
Host-Associated	Host-Associated	27.50%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	70.00%
Plants	Host-Associated → Plants	27.50%
Aquatic	Environmental → Aquatic	2.50%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	70.00%
Rhizosphere	Host-Associated → Plants → Rhizosphere	14.17%
Rhizoplane	Host-Associated → Plants → Rhizoplane	13.33%
Freshwater	Environmental → Aquatic → Freshwater	1.67%
Sediment	Environmental → Aquatic → Sediment	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	56.67%
Loam	Environmental → Terrestrial → Soil → Loam	12.50%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	11.67%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	8.33%
Soil	Host-Associated → Plants → Rhizosphere → Soil	5.83%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.83%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.83%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.83%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.83%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	30.00%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	12.50%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	11.67%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	11.67%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	8.33%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	7.50%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	5.83%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.33%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	2.50%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.67%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.83%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.83%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.83%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	20.83%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	10.83%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	7.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	6.67%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.17%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	3.33%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	3.33%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	3.33%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.50%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.50%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.50%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	1.67%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.67%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.67%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.67%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.67%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.67%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.67%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	1.67%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.83%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.83%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.83%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.83%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.83%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil	0.83%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.83%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	0.83%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.83%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.83%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.83%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.83%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.83%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.83%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2124908041	Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Permafrost Layer P3	Environmental	Open in IMG/M
3300000886	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A10-65cm-3A)- 1 week illumina	Environmental	Open in IMG/M
3300000887	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A3-65cm-16A)- 1 week illumina	Environmental	Open in IMG/M
3300000953	Soil microbial communities from Great Prairies - Kansas Corn soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001870	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Ref core NGADG0002-211	Environmental	Open in IMG/M
3300002538	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Ref core NGADG0004-212	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146	Environmental	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005587	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103	Environmental	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010147	Soil microbial communities from California, USA to study soil gas exchange rates - BB-CA-RED metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_11112015	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300011991	Permafrost microbial communities from Nunavut, Canada - A34_65cm_12M	Environmental	Open in IMG/M
3300011992	Permafrost microbial communities from Nunavut, Canada - A23_65cm_12M	Environmental	Open in IMG/M
3300011997	Permafrost microbial communities from Nunavut, Canada - A15_80cm_18M	Environmental	Open in IMG/M
3300012011	Permafrost microbial communities from Nunavut, Canada - A30_65cm_6M	Environmental	Open in IMG/M
3300012014	Permafrost microbial communities from Nunavut, Canada - A10_80cm_6M	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012358	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_100_16 metaG	Environmental	Open in IMG/M
3300012896	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S118-311C-2	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012976	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_0_1 metaG	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013768	Permafrost microbial communities from Nunavut, Canada - A35_65cm_0M	Environmental	Open in IMG/M
3300014502	Permafrost microbial communities from Stordalen Mire, Sweden - 612E3M metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300015199	Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-2c, rock/snow interface)	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300018066	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_b1	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300019873	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3s1	Environmental	Open in IMG/M
3300021080	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_coex redo	Environmental	Open in IMG/M
3300025481	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-2 deep-092012 (SPAdes)	Environmental	Open in IMG/M
3300025857	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Ref core NGADG0002-212 (SPAdes)	Environmental	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028587	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3	Environmental	Open in IMG/M
3300028710	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_380	Environmental	Open in IMG/M
3300028714	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_196	Environmental	Open in IMG/M
3300028717	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_158	Environmental	Open in IMG/M
3300028719	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_182	Environmental	Open in IMG/M
3300028720	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_357	Environmental	Open in IMG/M
3300028799	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_123	Environmental	Open in IMG/M
3300028807	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186	Environmental	Open in IMG/M
3300028811	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_149	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300028876	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_140	Environmental	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300030336	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day1	Environmental	Open in IMG/M
3300031082	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_193 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031092	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_367 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300034268	Forest soil microbial communities from Eldorado National Forest, California, USA - SNFC_MG_FRD_1.2	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
P3_CLC_02274210	2124908041	Soil	MSKVTDVDIVLSILEHQLVDGDGNNCGKVDDLEIAGLDGDSPEVVQILVGGTAWRSRGLLGRLAARLSGDAVLVPWRE
AL3A1W_11331862	3300000886	Permafrost	MSKVTEVDIALSILDHQLIDCDGQNCGKVDELEIAGLSGGSPEIVEIIVGGNAWRSRGLLGRLAARLSGNAVHVPWPE
AL16A1W_103539632	3300000887	Permafrost	MSKIDVDIALGILDHQLVDGDGHHCGKVXXXXXXXXXDSPEVVAILVGGNALRARGLLGRFAARLSGNAVHV
JGI11615J12901_102493441	3300000953	Soil	MSKSTPVELALGILDHQLVDADGRNCGKVDELELGGFDRGTPQVVEILVGGNAWRTRGLLGRLAA
JGI10216J12902_1108590921	3300000956	Soil	MSTSVAVDIGLGVLDHQLVDADGRNCGKVDDLEIAGLDGDSPEVVEILVGGNAW
JGI24129J20441_10911761	3300001870	Arctic Peat Soil	MSKVTEVDIALSILDHQLVDSDGQNCGKGDDLEISGLDGDSPEVVAMLVGGNAWRSRGRLGRLAARLSGNAVHVPWTEVDSVTSV
JGI24132J36420_100253151	3300002538	Arctic Peat Soil	MSKVTXVDIALSILDHQLVDSXGQNCGKGDDLEISGLDGDSPEVVAMLVGGNAWRSRGRLGR
Ga0062593_1002239061	3300004114	Soil	MNKVTDVDIALSILDHQLVDADGKNCGKVDDLEIAGLDGDAPEVVEILVGGSAWRSRALFGRLAASLSGDAVHVPW
Ga0062593_1032958071	3300004114	Soil	MSKASPLDLAQGVLDHQLVDADGENCGKVDELELSLDGDSPQVAEILVGGNAWRSRGLLGRLAAR
Ga0062589_1029154832	3300004156	Soil	MSKSTPVDLALGILDHQLVDADGRNCGKVDELELGGLDRGTPQVAEILVGGNAWRTRGLLGRLAGHLAGDAVHVPWSEV
Ga0066683_101048143	3300005172	Soil	MSKSTPVDLALGILDHQLVDANGENCGKVDELELSGLDRGTPQVAEILVGGNAWRTRGLLGRLAARLAGEAVHVPWS
Ga0066688_100692561	3300005178	Soil	MSDPVDLDIGLGILDHQLVDGDGRNCGKVDDLELSSLDSDSPEVVAILVGGNAWRSRGILGR
Ga0070691_106200291	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	MSNPVEVDIALGILDHQLVDSEGVNCGKVDDLEVQGLDSGSPEVTEIIVGGNAWRSRGLLGRLAAR
Ga0070674_1001768011	3300005356	Miscanthus Rhizosphere	MSKVVDVDIALSILDHQLVDADGKNCGKVDDLEITGLEGDAPEVVEILVGGSAWRSRALFGRLAASLSGDAVHV
Ga0070710_100240673	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MSKPSPVDLAQGILDHQLVDADGENCGKVDELELRLDGDSPQVSEILVGGNAWRSRGL
Ga0070705_1001239431	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	VSKQAEVDIALGILDHQLVDSNGINCGKVDDLELTGLDTDSPEVVEILVGGNAWRTRGLLGRLAS
Ga0070678_1001699663	3300005456	Miscanthus Rhizosphere	VSKQAEVDIALGILDHQLVDSNGINCGKVDDLELTGLDTDSPEVVEILVGGNAWRTRGLLGRLA
Ga0070697_1014568431	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MSKSSPVDLAQGILDHQLVDADGENCGKVDELELRLDGDSPQVSEILVGGNAWRSRGLLGRLAA
Ga0068853_1014507962	3300005539	Corn Rhizosphere	MSKVTEVDIALSILDHQLVDADGHNCGKVDDLEIAGLDTDAPEIVEILVGGNAWRSRGLLGSLAARLSGDAVHVP
Ga0066697_102199871	3300005540	Soil	MSKSTPVELALGILDHQLVDADGRNCGKVDELELGGLDRGTPQVAEILVGGNAWRTRGLLGRLAAHLAGEAVH
Ga0070686_1002314361	3300005544	Switchgrass Rhizosphere	MRKTTDVDIAVSIFDHQLVDSDGRNCGKVDDLEIAGLDGDSPEVTEILVGGNAWRS
Ga0070695_1013915651	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	MSKSTPVELALGILDHQLVDADGRNCGKVDELELGGLDRGTPQVAEILVGGNAWRTRGL
Ga0070696_1002892411	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	MSKVVDVDIALSILDHQLVDADGKNCGKVDDLEITGLEGDAPEVVEILVGGSAWRS
Ga0070693_1004290192	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	VSKQAEVDIALGILDHQLVDSNGINCGKVDDLELTGLDTDSPEVVEILVGGNAWRTRGLLGRLASRLAGDAVHV
Ga0070704_1006380121	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	VTKAADVDIALSILDHQLVDAHGRNCGKVDDLEIAGLDGDSPEVVEILVGGNAWRSRGVLGRLAARLSG
Ga0070704_1014780922	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	VSKSSPVDLAQGILDHQLVDADGENCGKVDELELRLDGDSPQVSEILVGGNAWRSRGLLGRLAA
Ga0066707_105068081	3300005556	Soil	MSKSTPVDLALGILDHQLVDANGENCGKVDELELSCLDRETPQVAEILVGGNAWRTRGLLGRLAARLAGEAVHV
Ga0068855_1008550661	3300005563	Corn Rhizosphere	MSKSTPVELALGILDHQLVDADGRNCGKVDELDLGGLDRGAPQVAEILVGGNAWRTRGLLGRLAAHLAGD
Ga0066654_105438041	3300005587	Soil	MTRPTEVDIALGILDHQLVDANGRNCGKVDDLEISGLDGGAPEVREIVVGG
Ga0070702_1009798451	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	MNKSTPVELALGILDHQLVDADGRNCGKVDELELGGLDRGTPQVAEILVGGNAWRTRGLLGRLAAHLAGDAV
Ga0068866_100836781	3300005718	Miscanthus Rhizosphere	VSKQAEVDIALGILDHQLVDSNGINCGKVDDLELTGLDTDSPEVVEILVGGNAW
Ga0068862_1006751732	3300005844	Switchgrass Rhizosphere	MSKSTPVELALGILDHQLVDADGRNCGKVDELELGGLDRGTPQVAEILVGGNAWRTRGLLGRLAAHLAG
Ga0079222_115535502	3300006755	Agricultural Soil	MSKSSPVDLAQGILDHQLVDADGENCGKVDELELRLDGESPQVSEILVGGNAWRSRGLLGRLAAHLAGDAVHVPWSE
Ga0066665_107993321	3300006796	Soil	MSKSTPVDLALGILDHQLVDADGRNCGKVDELELGGFDRATPQVAEILVGGNAWRTRGLLGRLAARLAGEAVHVPW
Ga0075434_1006385552	3300006871	Populus Rhizosphere	MRKTTDVDIAVSIFDHQLVDSDGRNCGKVDDLEIVGLDSASPEVTEILV
Ga0068865_1010769151	3300006881	Miscanthus Rhizosphere	VSEAVEVDIALGILDHQLVDSEGVNCGKVDDLEVQGLDRGSPEVTEIIVGGNAWRSRGLLGKLAARLSGNAVH
Ga0105245_113671342	3300009098	Miscanthus Rhizosphere	MSRSTPVDLALGILDHQLVDSDGVNCGKVDELELGGLDRGTPQVAEILVGGNAWRTRGLLGRLAAYLAGDA
Ga0105248_113872171	3300009177	Switchgrass Rhizosphere	MSKSTPVDLALGILDHQLVDADGRNCGKVDELELGGLDRGTPQVAEILVGGNAWRTRGLLGRLAARLAGDAVHVPWSEVESVSSVVK
Ga0105249_105072032	3300009553	Switchgrass Rhizosphere	MSKATEVDVALGILDHQLVDADGRNCGKVDDLEIAGLATGCPEVVEIVVGG
Ga0105249_131996231	3300009553	Switchgrass Rhizosphere	MSRSTPVDLALGILDHQLVDSDGVNCGKVDELELGGLDRGTPQVAEILVGGNAWRTRGLLGRLAAHLAGDAVHVPWSEV
Ga0126311_106416851	3300010045	Serpentine Soil	MTKRAQIDLAHGLLDHQLVDSDGVNCGKVDELELTGLDGDAPEVAEILVGGNAWRSRGLLGRFAARL
Ga0126311_115125672	3300010045	Serpentine Soil	MSRAIPVDLALGILDHQLLDSEGENCGKVDELELTGLDGDSPEVTEIVVGGN
Ga0126319_11556582	3300010147	Soil	MSKSTSVDLGLGILDHQLVDADGQNCGKVDELELRGFDRGTPQVAEILVGGNAWRTRGLLGRLAA
Ga0134109_103448972	3300010320	Grasslands Soil	MTKSTPVELALGILDHQLVDADGRNCGKVDELELGGLDRETPQVAEILVGGNAWRTRGLLGRLAAHLAGEAVHVPWSEV
Ga0134125_129615582	3300010371	Terrestrial Soil	MSKAVDVDIALGVLDHQLVDGDGHNCGKVDDLEIAGLDGDSPEVVEILVGGNAWRSR
Ga0105239_116581841	3300010375	Corn Rhizosphere	VSKQAEVDIALGILDHQLVDSNGINCGKVDDLELTGLDTDSPEVVEILVGGNAWR
Ga0120153_10391991	3300011991	Permafrost	MSKVTEVDIALSVLDHQLIDGDGQNCGKVDDLEIAGLDGDSPEIEEIIVG
Ga0120146_10383171	3300011992	Permafrost	MSKVTEVDIALSVLDHQLIDGDGQNCGKVDDLEIAGLDGDSPEIVEIIVGGNAWRSRGLLGRLAARLSGNAVHVPW
Ga0120162_11063571	3300011997	Permafrost	MSKVTEVDIALSILDHQLVDCDGGNCGKIDDLEIAGLDGDSPEIEEIIVGGNAWRSRGRLGKLAARLAGNAVHVS
Ga0120152_10493761	3300012011	Permafrost	MTKVTDVDIALSILDHQLVDGDGKNCGKVDDLEIAGLDGDSPEIVEIIVGGNAWRSRGLL
Ga0120152_11448481	3300012011	Permafrost	MSKVTEVDIALSILDHQLIDGDGQNCGKVDELEIAGLSGGSPEIVEIIVGGNAWRSRGLLGRLAARLAGNAVHVPWP
Ga0120159_11958011	3300012014	Permafrost	MSKVTEVDIALSILDHQLIDGDGQNCGKVDDLEIAGLDGDTPEIVEIIVGGNAWRSRGLLGS
Ga0137364_110456561	3300012198	Vadose Zone Soil	MSKSTPIDLALGILDHQLVDAEGRNCGKVDELELGGLDRGTPEVTEILVGGNAWRTR
Ga0137380_104591152	3300012206	Vadose Zone Soil	MSRVVEVDIALGILDHQLVDRDGKNCGKVDDLEIAGLDGDSPEVVEIIVGGNAWRSRGLLGRLMARFSGDAVHVPWAEV
Ga0137377_117489712	3300012211	Vadose Zone Soil	MSKPAPVDLGLGILDHQLVDADGQNCGKVDELELVGLDRGTPQVAEILVGGNAWR
Ga0137366_110125121	3300012354	Vadose Zone Soil	MSKAIEVDIALGILDHQLLDRDGQNCGKVDDLELAGLDGDAPEVVEILVGGNAWSSR
Ga0137368_109199271	3300012358	Vadose Zone Soil	MSKATPVDLALGILDHQLVDSDGENCGKVDELELTGLDGGSPEVVEIVVGGNAWRTRGLL
Ga0157303_102515681	3300012896	Soil	MSKAGPLDLAQGVLDHQLVDADGENCGKVDELELRLDGDSPQVSEILVGGNAWRSRGLLGRLAAHLAGDAVHVPWSEVDSVSSV
Ga0164303_110602111	3300012957	Soil	MSKDRAEVDIALGILDHQLVDADGQNCGKVDDLEIAGIDGAAPEVVEILVGGNAWRSRGRLG
Ga0164303_111174511	3300012957	Soil	MRKTTDVDIAVSIFDHQLVDSDGRNCGKVDDLEIAGLDGDSPDVTEILVGGNAWRSRGLLGRRAARI*
Ga0164299_100492353	3300012958	Soil	LSKPAEGDIALAILDHQLVDAAGINCGKVDELEVAVLDTDSPEITEILVGGNAWRSRGLLGRIAARLAGNAVHVPWSEV
Ga0164299_115279262	3300012958	Soil	MSKPVEVDIALGIRDHQLVDSDGVNCGKVDDLELTGLDTDSPEVVEILVGGNAWR
Ga0164302_114900361	3300012961	Soil	MSKATPVNLALGILDHQLVDSEGRHCGKVDELELGGLDRGTPEVAEILVGGNAWRTRGRLGRLAARLA
Ga0134076_102698711	3300012976	Grasslands Soil	MSKSTPVDLALGILDHQLVDADGRNCGKVDELELGGFDRGTPQVAEILVGGNAW
Ga0157378_106559411	3300013297	Miscanthus Rhizosphere	MSKSTPVDLALGILDHQVVDADGVNCGKVDELELGGLDRGTPQVAEILVGGNAWRTRGLLGRLAARLAGDAVHVPWS
Ga0163162_122577501	3300013306	Switchgrass Rhizosphere	VSKQAEVDIALGILDHQLVDSNGINCGKVDDLELTGLDTDSPEVVEILVGGNAWRTRGLL
Ga0163162_125960452	3300013306	Switchgrass Rhizosphere	MSRSTPVDLALGILDHQLVDSDGVNCGKVDELELGGLDRGAPQVAEILVGGNAWRTRGLLGRLAAHLAGDAVHVPWSEVES
Ga0120155_10112546	3300013768	Permafrost	MNKTTEVDIALSILDHQLVDGDGQNCGKVDDLEISGLDGDSPEVVQILVGGNAWRSRGLLGRLAARLS
Ga0182021_133953492	3300014502	Fen	MSKVTEVDIALSILDHQLVDGDGQNCGKVDDLEIAGLDGDSPEVVAILVGGNAWRSRGRFGRL
Ga0157379_120022461	3300014968	Switchgrass Rhizosphere	MNKSTPVELALGILDHQLVDADGRNCGKVDELELGGLDRGTPQVAEILVGGNAWRTRGLLGRLAAYVAGDAVHV
Ga0167647_11102922	3300015199	Glacier Forefield Soil	MSKVIDVDIALSILDHQLVDGDGQNCGKVDDLEIAGLDTDAPEIAEILVGGNAWSTPSRRSSR*
Ga0132256_1010235701	3300015372	Arabidopsis Rhizosphere	MSQITDVDLALGILDHQLVDRDGNNCGKVDDLEITGLDGNSPEVVEILVGGNAWRSRGR
Ga0132256_1019674961	3300015372	Arabidopsis Rhizosphere	MSEAVEVDIALGILDHQLVDSEGINCGKVDDLEIQGLDSGSPEVMEIVVGGNAWRSRGLLGRLAARLA
Ga0132255_1061503372	3300015374	Arabidopsis Rhizosphere	VRPEDVDVALGILDHQVVDADGVNRGKVDDLELAGVEEGAPRVTALLVGRGAWRTR
Ga0184617_12493041	3300018066	Groundwater Sediment	MSKPVEVDIALGILDHQLVDADGINCGKVDDLELTGLDTASPEVVEILVGGNAWRSRGMLGRLLARFAGDAVHVPW
Ga0066662_102896592	3300018468	Grasslands Soil	MSKSTPVDLALGILDHQLVDANGENCGKVDELELSCLDRETPQVAEILVGGNAWRT
Ga0193700_10550732	3300019873	Soil	MSKPVEVDIALGILDHQLVDSDGVNCGKVDDLELTGLDTASPEVVEILV
Ga0210382_103460682	3300021080	Groundwater Sediment	MSKPVEVDIALGILDHQLVDSDGVNCGKVDDLELTGLDTDSPEVVEILVGGNAWRSRGLL
Ga0208079_10898642	3300025481	Arctic Peat Soil	MSKVTEVDIALSILDHQLVDSDGQNCGKGDDLEISGLDGDSPEVVAMLVGGNAWRSRGRLGRLAARLSGNAVHVPWTEVDSVT
Ga0209014_102840701	3300025857	Arctic Peat Soil	MSKVIEVDIALSILDHQLVDGDGKNCGKVDDLEIAGLDGDSPEVVAILVGGNAW
Ga0207688_101295822	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	VSKQAEVDIALGILDHQLVDSNGINCGKVDDLELTGLDTDSPEVVEILVGGNAWRTRGLLGRLAMNGSSSEL
Ga0207684_106593632	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MSEPRPVDLALEILDHQLVDADGQNCGKVDELELSGLDRETPQIAEILVGGNAWRTRGLPGR
Ga0207707_109373272	3300025912	Corn Rhizosphere	MSKVVDVDIALSILDHQLVDADGKNCGKVDDLEITGLEGDAPEVVEILVGGSAW
Ga0207663_111794662	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MSRSTPVDLALGILDHQLVDSDGVNCGKVDELELGGLDRGTPQVAEILVGGNAWRTRGLLGRLAA
Ga0207687_103864432	3300025927	Miscanthus Rhizosphere	MSKSTPVELALGILDHQLVDADGRNCGKVDELELGGLDRGTPQVAEILVGGNAWRTRGLLGRLAAHLAGDAVHVPW
Ga0207644_116572742	3300025931	Switchgrass Rhizosphere	MSKSTPVDLALGILDHQLVDADGRNCGKVDELELGGLDRGAPQVAEILVGGNAWRTRGLL
Ga0207690_114185531	3300025932	Corn Rhizosphere	MSNEVDLGLGVLDHQLVDSEGCNCGKVDDLELGPLSGESAPEVQAILVGGNAWRGRGWLGRLAARLGGNAV
Ga0207669_108635692	3300025937	Miscanthus Rhizosphere	MSKSTPVELALGILDHQLVDADGRNCGKVDELELGGLDRGTPQVAEILVGGNA
Ga0207689_106087691	3300025942	Miscanthus Rhizosphere	MSKSTPVDLALGILDHQLVDADGRNCGKVDELELGGLDRGTPQVAEILVGGNAWRTRGLLGRLAAHLAGDAVHVPWSEVESVSSV
Ga0207651_108178631	3300025960	Switchgrass Rhizosphere	MSKSSPVDLAKGILDHQLVDADGENCGKVDELELRLDGDSPQVAEILVGGNAW
Ga0207640_107298912	3300025981	Corn Rhizosphere	MSKPSPVDLAQGILDHQLVDADGRNCGKVDELELGGLDRGAPQVAEILVGGNAWRTRGLLGRLAA
Ga0207677_106595351	3300026023	Miscanthus Rhizosphere	MRKTTDVDIAVSIFDHQLVDSDGRNCGKVDDLEIAGLDGDSPEVTEILVGGNAWRSRGL
Ga0207708_119843221	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	MSRSSPVDLAQGILDHQLVDADGENCGKVDELELRLDGDSPQVSEILVGGNAWRSRGLLGRLAAHLAGDAV
Ga0207641_112119182	3300026088	Switchgrass Rhizosphere	MSKPSPVDLAQGILDHQLVDADGENCGKVDELELRLDGDSPQVSEILVGGNAWRSRGLLGRLAAHLAGDAVHVPWSEVDS
Ga0207698_107985371	3300026142	Corn Rhizosphere	VSKQAEVDIALGILDHQLVDSNGINCGKVDDLELTGLDSDSPEVVEILVGGNAWRT
Ga0268264_121112762	3300028381	Switchgrass Rhizosphere	MRKTTDVDIAVSIFDHQLVDSDGRNCGKVDDLEIAGLDGDSPEVTEIHVGGNAWRS
Ga0247828_112455461	3300028587	Soil	MSKSTPVDLALGILDHQLVDADGRNCGKVDELELGGLDRGTPQVAEILVGGNAWRTRGLLGRLAA
Ga0307322_101022462	3300028710	Soil	MSKSTPVDLALGILDHQLVDADGRNCGKVDELELGGLDRGTPQVAEILVGGNAWRTRGLLGRLAARFAGDAVHVPWSEVESVSSVV
Ga0307309_101290382	3300028714	Soil	MSSGDELDLGLGVLDHQLVDSEGRNCGNVDELEIAGISSGEPEVIEILVGGNAWRGRGLFGRIAAALSGDAVHVPWSEVD
Ga0307298_100182101	3300028717	Soil	MSTPAEVDIALGILDHQLVDADGINCGKVDDLEVAGLDTDSPEIVEILVGGNAWRSRGLLGRIAG
Ga0307301_101154972	3300028719	Soil	MSKSTPVDLALGILDHQLVDADGQNCGKVDELELGGFDRGTPQVAEILVGGNAWRTRGLLGLLAAHLA
Ga0307317_100654182	3300028720	Soil	MSKSTPVELALGILDHQLVDADGRNCGKVDELELGGLDRGTPQVAEILVGGNAWRTRGLLGRLAAHLAGDAVHVPWSEVESV
Ga0307317_101523521	3300028720	Soil	MSKPVEVDIALGILDHQLVDSDGVNCGKVDDLELTGLDTASPEVVEILVGGNAWRSRGVLGRLLARFAGDAVHVPWSE
Ga0307317_103114992	3300028720	Soil	MSKVTEVDIALSVLDHQLVDGVGQNCGKVDDLEIAGLDGDSPEVAEILVGGNAW
Ga0307284_102056712	3300028799	Soil	MRETTDVDIALSIFDHQLVDGDGQNCGKVDDLEITGLDSDSPEVAEILVGGNAWR
Ga0307284_104307451	3300028799	Soil	VSKHAEVDIALGILDHQLVDSNGVNCGKVDDLELTGLDSGSPEVVEIIVGGNAWRKRGLLGRLAGRLAGDAVHVPWAE
Ga0307305_102509512	3300028807	Soil	MRKTTDVDIALSIFDHQLVDGDGKNCGKVDDLEIAGLDGDSPEVAEILVGGNAWRSRGVLGRLAARLSGDA
Ga0307292_101147832	3300028811	Soil	MSKSTPVELALGILDHQLVDADGRNCGKVDELELGGLDRGTPQVAEILVGGNAWRTRGLLGRLAARLAGDAVHVPWS
Ga0307292_101466812	3300028811	Soil	MSKPVEVDIALGILDHQLVDADGINCGKVDDLELTGLDSDSPEVVEILVGGNAWRSRGLLGRLLAHFAGDAVHVPWS
Ga0307312_102672981	3300028828	Soil	MSKSTPVDLALGILDHQLVDADGQNCGKVDELELGGFDRGRPQVAEILVGGNAWRTRGLLGRLAAHLAGEAVHVPWS
Ga0307312_103437761	3300028828	Soil	MSKSTPVELALGILDHQLVDADGRNCGKVDELELGGFDRGTPQVAEILVGGNAW
Ga0307286_103234271	3300028876	Soil	MSTPAEVDIALGILDHQLVDADGINCGKVDDLEVAGLDTDSPEIVEILVGGNAWRSRGLL
Ga0307278_104595822	3300028878	Soil	MRETTDVDIALSIFDHQLVDGDGQNCGKVDDLEITGLDSDSPEVAEILVGGNA
Ga0247826_105882311	3300030336	Soil	MSKPVEVDIALGILDHQLVDSDGVNCGKVDDLELGGLDTDSPEVVEILVGGN
Ga0308192_10772422	3300031082	Soil	VSKHAEVDIALGILDHQLVDSNGVNCGKVDDLELTGLDSGSPEVVEIIVGGNAWRKRGLLGRLAGRLA
Ga0308204_103314501	3300031092	Soil	MSKRAEVDIALGILDHQLVDSNGVNCGKVDDLELTGLDGDSPEVVEILVGGNAWRSRGLLGRLAARFAGDAVHVPWSE
Ga0307469_113356121	3300031720	Hardwood Forest Soil	MSKSTPVELALGILDHQLVDADGRNCGKVDELELGGLDRGTPQVAEILVGGNAWRTRGLLGRLAA
Ga0307416_1001573804	3300032002	Rhizosphere	VSEATPVDLALGILDHQLVDADGENCGKVDELELRGIDGEPEVVEIVVGGNAWRTRG
Ga0307472_1007782861	3300032205	Hardwood Forest Soil	MRKTTDVDIAVSIFDHQLVDSDGRNCGKVDDLEIAGLDGDSPEVTEILVGGN
Ga0372943_0553043_1_162	3300034268	Soil	MSNTGGVDLALGILDHQLVDAEGENCGKVDELELSGLDGDSPEVLEIVVGGNAW

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F073389

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences