Basic Information | |
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Family ID | F073366 |
Family Type | Metagenome |
Number of Sequences | 120 |
Average Sequence Length | 43 residues |
Representative Sequence | PNKRLKLAGGDRFKGSGVLCPGGHGLSSNGLAPAGESPAA |
Number of Associated Samples | 76 |
Number of Associated Scaffolds | 120 |
Quality Assessment | |
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Transcriptomic Evidence | No |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 38.14 % |
% of genes near scaffold ends (potentially truncated) | 76.67 % |
% of genes from short scaffolds (< 2000 bps) | 78.33 % |
Associated GOLD sequencing projects | 62 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.14 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (90.000 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (66.667 % of family members) |
Environment Ontology (ENVO) | Unclassified (78.333 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (82.500 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70 |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Fibrous | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 0.00% β-sheet: 0.00% Coil/Unstructured: 100.00% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.14 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Vadose Zone Soil Grasslands Soil Soil Grasslands Soil Soil |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
JGI25384J37096_100202695 | 3300002561 | Grasslands Soil | MPNKRLKLAGGDRSKGSGVLCPGGHGLSSHTTALAGESPAAYARSVR |
JGI25384J37096_101384172 | 3300002561 | Grasslands Soil | NTRLKLAGGDRSEGTGVFVPGGHGLSSNSLASAGESPAA* |
JGI25382J37095_100162873 | 3300002562 | Grasslands Soil | MPNKRLKLAGGDRSKGSGVLCPGGHGLSSHTTALAGESPAAYARSVRRPVGNRGQQ* |
JGI25382J43887_102916531 | 3300002908 | Grasslands Soil | MPNKRLKLAGGDRSKGSGVLCPGGHGLSSHTTALAGESPAAYARSV |
JGI25382J43887_102966241 | 3300002908 | Grasslands Soil | RLSNKRLKLTGGDRLKGSGVLCPGGHGLSSNGLAPNCGSPAA* |
Ga0066674_100275486 | 3300005166 | Soil | PNKRLKLPGGDRFKGSGVLCPGGHGLPSKTLAPASGSPAA* |
Ga0066672_104769222 | 3300005167 | Soil | IVNGTPPNKRLKLPGADRSKRIGVLCPGGHALTATTLAPASESPAA* |
Ga0066677_102307142 | 3300005171 | Soil | PNKRLKLAGGDRSKGSGVLCPGGHGLSSITLAPAGEAPAA* |
Ga0066683_102400693 | 3300005172 | Soil | PNKRLKLPGGDRSKGSGVLCPGGHGLSSISLAPASESPAA* |
Ga0066680_105052511 | 3300005174 | Soil | VLPNKRLKLAGGYRFNGIGVLCPGGHGLSSHILAPAGASPAA* |
Ga0066680_108425052 | 3300005174 | Soil | VLPNKRLKLAGGYRFNGIGVLCPGGHGLSSHILAPAGASP |
Ga0066673_103019361 | 3300005175 | Soil | MSRRALPNMRLKLTGADRSKGTGVLCPGGHGLSSNGLAPAGGSPAA* |
Ga0066679_106042911 | 3300005176 | Soil | MIVPSWRALPNKRLKLAGGDRFKGSGVWCPGGHGLSSHILAPAGESPAA* |
Ga0066688_102442972 | 3300005178 | Soil | PLLSRHGQPPNKRLKLAGGDRFRGSGVLCPGGHGLSSNTLAPAGESPAA* |
Ga0066688_102991533 | 3300005178 | Soil | VPPNKRLKLTGGDRSKGSGVLCPGGHGLSSNGVAPAGGSPAA* |
Ga0066688_107039802 | 3300005178 | Soil | NKRLKLAGGDRSKGSGVLCPGGHGLSSHILAPAGESPAA* |
Ga0066688_107381742 | 3300005178 | Soil | MAPNKLLKLAGANRFKGSGVLCPGGHGLSSNTLAPARGSP |
Ga0066684_104407952 | 3300005179 | Soil | MAVSLGLWRTALPNMRLKLAGADRFKGNGVLCPGGHGLSSNTLAPA |
Ga0066685_107433471 | 3300005180 | Soil | TKVVSESRPNKRLKLAGGDRLNGSGALCPGGHGLSSNTLAPAGESPAA* |
Ga0066689_102870483 | 3300005447 | Soil | VTPADKGRLPNKRLKLPGGDRLKGSGVLCPGGHELSFKILASAGGSPAA* |
Ga0066682_100159773 | 3300005450 | Soil | MRRMGLPNKRLKLAGGDRFKGIGVLCPGGHGLSSNTLAPASESPAA* |
Ga0066697_105980281 | 3300005540 | Soil | VIIRLPLPNKRLKLAGGDRPRGSGVLCPGGLGLSSNTLAPASESPA |
Ga0066701_101367571 | 3300005552 | Soil | RLKLAGGDRSGETERLRPGGRGLSSHILAPAAESPAA* |
Ga0066701_101940554 | 3300005552 | Soil | MLLPNKRLKLTGGDRSKGSGVLCPGGHGLSSNGVAPAG |
Ga0066701_103953751 | 3300005552 | Soil | AMLLPNKRLKLTGGDRSKGSGVLCPGGHGLSSNGVAPAGASPAA* |
Ga0066701_106248871 | 3300005552 | Soil | AMLLPNKRLKLTGGDRSKGSGVLCPGGHGLSSNGVAPAGGSPAA* |
Ga0066695_100562494 | 3300005553 | Soil | MGLPNKRLKLAGGDRFKGIGVLCPGGHGLSSNTLAPASESPAA* |
Ga0066695_105014921 | 3300005553 | Soil | PPNKRLKLAGGDRFKGSGVLCPGGHGLSSHILAPAGESPAR* |
Ga0066695_105913292 | 3300005553 | Soil | MAPNKRLKLAGANRFKGSQVLCPGGHGLSSNTLASANGS |
Ga0066661_101050271 | 3300005554 | Soil | LAGGDRFKGSGVLCPGGHGLSSTTLAPTGESPAA* |
Ga0066661_101706431 | 3300005554 | Soil | NKRLKLAGADRLKGSGVLCPGGHGLSSNGLAPAGGSPAA* |
Ga0066661_103849572 | 3300005554 | Soil | PNKRLKLAGGDRFKGNGVLCPGGHGLSSNTLAPAGGSPAA* |
Ga0066661_104943262 | 3300005554 | Soil | VLPNKRLKLTGGDRFKGSGVLCPGGHELSSNGLAPAGGSPAA* |
Ga0066661_105844052 | 3300005554 | Soil | PNKRLKLTGGDRSKGSGVLCPGGHGLSSNGVAPAGGSPAA* |
Ga0066661_106647462 | 3300005554 | Soil | LTGGDRSKGTGMLCPGGHGLSSDGLAPAGGSPAA* |
Ga0066692_101608251 | 3300005555 | Soil | LPPNKRLKLAGGDRFKGSGVLCPGGHGLSSHILAPAGESPAR* |
Ga0066692_105983512 | 3300005555 | Soil | MLSAASDVPPNKRLKLAGGDRLKGSGVLCPGGHGLSSNTLAPAGGSPAA* |
Ga0066707_105931092 | 3300005556 | Soil | ALPNKRLKLAGADRFNGSGVLCPVGHGLTSHTLAPPSGSPAA* |
Ga0066707_107346212 | 3300005556 | Soil | VSFDVLGKYANGLPNKRLKLAGADRLKGSGVLCPGGHGLSSNGLAPAGGSPAA* |
Ga0066707_108726623 | 3300005556 | Soil | ARPNKRLKLAGGDRSKGSGVLCPGGHALSSTPLAPAGEAPAA* |
Ga0066704_100945083 | 3300005557 | Soil | MPLPNKRLKLTGGDRSKGSGVFCPGAHRLTPSDLAPACESPRSLSAIR* |
Ga0066698_102067992 | 3300005558 | Soil | MRLKLAGGDRFKGSGVFPPCGRGLSAIGLAPASESPAA* |
Ga0066700_100399806 | 3300005559 | Soil | MPPNKRLKLAGGDRLKGSGVLCPGGHGLSSNTLAPAGGSP |
Ga0066700_101988613 | 3300005559 | Soil | VSFDVLGKYANGLPNKRLKLAGADRLKGSGVLCPGGHGLSSNGLAPAGGSPAA |
Ga0066670_103299184 | 3300005560 | Soil | PPNKRLKLAGGDRSKGSGVLCPGEQGLSSTILAPAGASPAA* |
Ga0066670_106315751 | 3300005560 | Soil | PNKRLKLAGGDRFKGSGVLCPGGHGLSSNGLAPAGESPAA* |
Ga0066699_112664381 | 3300005561 | Soil | VLGKYANGLPNKRLKLAGADRLKGSGVLCPGGHGLSSNGLAPAGGSPA |
Ga0066703_1000295414 | 3300005568 | Soil | VVVTLLPNKRLKLAGGERSKGSGVLCPGGHGLSSHGLAPAGGSPAA* |
Ga0066703_100092759 | 3300005568 | Soil | MPPNKRLKLAGGDRLKGSGVLCPGGHGLSSNTLAPAGG |
Ga0066703_101850971 | 3300005568 | Soil | PNKRLKLAGGDRFRGSGVLCPGGHGLSSNTLAPAGESPAA* |
Ga0066703_102238481 | 3300005568 | Soil | PLPNKRLKLTGGDRSKGSGVFCPGADRLTPSDLAPACESPRSLSAIR* |
Ga0066703_106124091 | 3300005568 | Soil | VCGRLAPNKRLKLAGGDRFRGSGVLCPGGHGLSSNTLAPAGESPA |
Ga0066703_107985332 | 3300005568 | Soil | VTISAIRRVAPNKRLKLTGGGRFKGSGVLCPGGHGLSSTTLAP |
Ga0066694_102430683 | 3300005574 | Soil | MSRRALPNMRLKLTGADRSKGTGVLCPGGHGLSSNGLAP |
Ga0066708_109262012 | 3300005576 | Soil | RLKLAGGDRSKGSGVLCPGGHGLTSNGLAPAGGSPAV* |
Ga0066706_100150433 | 3300005598 | Soil | MRLKLAGGDRFKGSGVFPPGGRGLSAIGLAPASESPAA* |
Ga0066651_100265046 | 3300006031 | Soil | VVSSRPNKRLKLTGGDRFKGSGVLCPGGHELSSNGLAPAGGSPAA* |
Ga0066651_103295192 | 3300006031 | Soil | LPNKRLKLPGGDRSKGSGVLCPGGHGLSSNTLALASGSPAA* |
Ga0066696_102103905 | 3300006032 | Soil | AIVNGTPPNKRLKLAGADRSKRIGVLCPGGHALTATTLAPASESPAA* |
Ga0066652_1012235122 | 3300006046 | Soil | MKRTPPNKRLKLAGADRSKGSGVLSSWRGTDCATTLALVGGTPAA* |
Ga0066653_104066241 | 3300006791 | Soil | MLLPNKRLKLAGADRFKGSGVLCPGGHGLSSHTLARAGDSPAA* |
Ga0066665_106127872 | 3300006796 | Soil | MLAPNKRLKLAGGDRFNGTGVLCAGAHELSFNELRPAGESPAA* |
Ga0066665_113786252 | 3300006796 | Soil | ARGATSGQLGVVLPNKRLKLTGGDRSNGNGVLCPWRGTDCRPLHLAPAGESPAA* |
Ga0066659_103094823 | 3300006797 | Soil | VLPNKRLKLAGGYRFNGIGVLCPGGHGLSSHILAPAGASPA |
Ga0066659_107795891 | 3300006797 | Soil | PPNKRLKLAGGDRSEGSGVLCDGGHGLSSNTLAPAGESPAA* |
Ga0066659_108374832 | 3300006797 | Soil | KLTGDDRSKGNGVLCPGGHGLSSNTLAPVGESPAA* |
Ga0066659_111859022 | 3300006797 | Soil | PNKRLKLAGADRLKGSGVLCPGGHGLSSNGLAPAGGSPAA* |
Ga0066660_107445772 | 3300006800 | Soil | KLAGGDRFKGSGVLCPGGHGLSSHGLARAGESPAA* |
Ga0066709_1004058711 | 3300009137 | Grasslands Soil | MPLPNKRLKLAGVYRLSGSGVLCPGGHGLSSTTLAP |
Ga0134088_102069921 | 3300010304 | Grasslands Soil | VKLLPNNRLKMPGAARSKGSGVLCPGGHGLSSNGLAPAGESPAAYARSVRL |
Ga0134111_101058171 | 3300010329 | Grasslands Soil | KLAGGDRFKGNRVLCAGAHDLSFNGLAPAGGSPAA* |
Ga0134080_100588133 | 3300010333 | Grasslands Soil | PNKRLKLTGGDRFKGSGVLCPGGHGLSSHILAPAGESPAR* |
Ga0137364_108582403 | 3300012198 | Vadose Zone Soil | MEPPNKRLKLAGGDRFKGNGVLCPGRHGLSSNTLAPAGES |
Ga0137383_105053272 | 3300012199 | Vadose Zone Soil | NKRLKLAGGDRFKGSGVLCPGGHGLSSNSLAPVGGSPAA* |
Ga0137380_100391475 | 3300012206 | Vadose Zone Soil | VGRAPNKRLKLAGGDRPRESECCALTGHGLWSTTLAPAGGSPAA* |
Ga0137380_100705381 | 3300012206 | Vadose Zone Soil | MNCVPLPNKRLKLTGADRSKGSGVLCPWRGHGLTSTDLAPAGGS |
Ga0137381_100193241 | 3300012207 | Vadose Zone Soil | KRLTLAGDHRFNGSGVLCPGVYGLSSNGLAPEGGSPAV* |
Ga0137381_111605131 | 3300012207 | Vadose Zone Soil | LPNKRLKLTGGDRSKGSGVLCPGGHGLTSTTLVPAGETPAA* |
Ga0137381_116712281 | 3300012207 | Vadose Zone Soil | VEFIERAPNKRLKLAGGDRSKGSGVLCPGGHGLSSDGLAPAG |
Ga0137376_106548311 | 3300012208 | Vadose Zone Soil | PNKRLKLTGGDRSKGSGVLCPGGHGLSSTGLAPAGESPAA* |
Ga0137379_101823722 | 3300012209 | Vadose Zone Soil | VKLLPNKRLKLAGGDRFKGSGVLCPGGHGLSANGLAPAAESPAA* |
Ga0137379_105116581 | 3300012209 | Vadose Zone Soil | KGAAKELRTMKLLPNKRLKLTGGDRFKGNGVLCPWRGTGRSSTRLAPARESPAA* |
Ga0137379_110840192 | 3300012209 | Vadose Zone Soil | MTALPNKRLKLAGGGRSKGSGGLCPGGYGLSSSTLAPAGGSPAA |
Ga0137378_100315329 | 3300012210 | Vadose Zone Soil | MNCVPLPNKRLKLTGADRSKGSGVLCPWRGHGLTSTDLAPAGGSPAA* |
Ga0137378_113972062 | 3300012210 | Vadose Zone Soil | PPNKRLKLSGGDRSNGIGVLCPGGHGLSSNTLAPAAESPAA* |
Ga0137370_103413131 | 3300012285 | Vadose Zone Soil | MAPNKRLKLAGGDRSKGSGVLCPGGHGLSSNTLAPAGGSPAA |
Ga0137387_100165563 | 3300012349 | Vadose Zone Soil | VGWAPNKRLKLAGGDRHRESECCALTGHGLWSTTLAPAGGSPAA* |
Ga0137387_105423071 | 3300012349 | Vadose Zone Soil | MCRPPNKRLKLAGGDRFKGNGVLCPGGHGLSSNGLAP |
Ga0137386_109941432 | 3300012351 | Vadose Zone Soil | PNKRLKLAGGDRSKGTGVLCPGGHGLSSNTLAPAGESPAA* |
Ga0137384_108527251 | 3300012357 | Vadose Zone Soil | LRAELPNKRLKLAGVYRLDGSGVLCPDGHGLSSNGLAPAGE |
Ga0137385_106447561 | 3300012359 | Vadose Zone Soil | PPNKRLKLTGGDRFEGSGVLCPGGHGLSSHTRVPAGEAPAA* |
Ga0137396_102160493 | 3300012918 | Vadose Zone Soil | MALLPNKRLKLAGADRSKGSGVLCPGGHGLTSTTLAPPGGSPA |
Ga0134076_100052475 | 3300012976 | Grasslands Soil | MQPPNKRLKLTGGNRSKGSGVLCPGKHGLSSHTLAPAGGSPAA* |
Ga0134087_100070286 | 3300012977 | Grasslands Soil | VRLPPNKRLKLAGGDRFKGSGVLCPGGHGLSSHILAPAGESPA |
Ga0066669_106390022 | 3300018482 | Grasslands Soil | MRAAPNKNVKLAGVDRSNGNGVLCLGGHGLSFNTLAPAGGAP |
Ga0209235_12098321 | 3300026296 | Grasslands Soil | VRLPPNKRLKLAGGDRFKGSGVLCPGGHGLSSHILAPAGESPAR |
Ga0209469_10201235 | 3300026307 | Soil | MGLPNKRLKLAGGDRFKGIGVLCPGGHGLSSNTLAPASESPAA |
Ga0209055_12478881 | 3300026309 | Soil | MLLPNKRLKLAGGDRFKRSGVLCPSGHGLSSNTLAPAG |
Ga0209761_10330516 | 3300026313 | Grasslands Soil | MPLPNKRLKLTGGDRSKGSEVLCPGAHRLTSSDLAPACESPAA |
Ga0209686_10389395 | 3300026315 | Soil | GTWGPKPVLPNKRLKLAGGYRFNGIGVLCPGGHGLSSHILAPAGASPAA |
Ga0209155_10374981 | 3300026316 | Soil | VRVLPNKRLKLTGGDRSKGSGVLCPGGRGLTSNGLAPAGESPAA |
Ga0209155_11039361 | 3300026316 | Soil | MMPPNKRLKLSGGERCKGNGALCPGGHGLSSHTLAPASGS |
Ga0209801_11237981 | 3300026326 | Soil | MKNRSMPPNKRLKLTGGNRSKGSGVLCPGGHGLSSNGLAPASRSP |
Ga0209801_11623242 | 3300026326 | Soil | HCVMSCVRVLPNNRLKLTGGDRSKGSGVLCPGGRGLTSNGLAPAGESPAA |
Ga0209266_10319671 | 3300026327 | Soil | PNKRLKLAGGDRFKGIGVLCPGGHGLSSNGLAPASESPAA |
Ga0209803_10516691 | 3300026332 | Soil | VTPADKGRLPNKRLKLPGGDRLKGSGVLCPGGHELSFKILASAGGSPAA |
Ga0209158_11182511 | 3300026333 | Soil | VGVAMPLPNKRLKLTGGDRSKGSGVFCPGADRLTPSDLAPACESPRSLSAIR |
Ga0209377_10101448 | 3300026334 | Soil | GSVEKQPPNKRLKLAGGDRFRGSGVLCPGGHGLSSNTLAPAGESPAA |
Ga0209804_13282991 | 3300026335 | Soil | LGKYANGLPNKRLKLAGADRLKGSGVLCPGGHGLSSNGLAPAGGSPAA |
Ga0209808_12867951 | 3300026523 | Soil | VTIALPNKRLKLTGGDRSSGIGVLCPGGHGLSSNTLAPPSESP |
Ga0209690_10568661 | 3300026524 | Soil | VIIQLPLPNKRLKLAGGDRSKGNGVLCPGGHGLSSIT |
Ga0209806_10210006 | 3300026529 | Soil | VVVTLLPNKRLKLAGGERSKGSGVLCPGGHGLSSHGLAPAGGSPAA |
Ga0209806_11207981 | 3300026529 | Soil | MPPNKRLKLAGGDRLKGSGVLCPGGHGLSSNTLAPAG |
Ga0209056_100346679 | 3300026538 | Soil | VRRDAAKVLPNKRLKVTGGDRFQGSGVLCPGGHGLSSHTLAAAGESPAA |
Ga0209056_100349212 | 3300026538 | Soil | MWRIRPLPNKRLKLAGGDRLKGNGALCPGGHRLSSTTLAPASESPAA |
Ga0209056_100383491 | 3300026538 | Soil | RPNKRLKLPGGDRFKGIGVLCPWRGTDFVHTLAPAGESPAA |
Ga0209056_106645151 | 3300026538 | Soil | MKSPPNKRLKLAGGDRLKGSGVLCPGGYGLSSTTLA |
Ga0209156_101445873 | 3300026547 | Soil | SEPPNKRLKLAGGDRFEGSGVLCAGGHGLSSNTLAPAGESPAA |
Ga0209689_12955791 | 3300027748 | Soil | VLGKYANGLPNKRLKLAGADRLKGSGVLCPGGHGLSSNGLA |
Ga0137415_104149153 | 3300028536 | Vadose Zone Soil | MCGCMPNMRLKLAGRDRFKRSGVLCPVPGHGLSSTALA |
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