Basic Information | |
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Family ID | F073219 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 120 |
Average Sequence Length | 45 residues |
Representative Sequence | MNESGYKGFRQDELEYQYNPRVSVPEYPELAKVRAAQARKVR |
Number of Associated Samples | 106 |
Number of Associated Scaffolds | 120 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 96.67 % |
% of genes near scaffold ends (potentially truncated) | 91.67 % |
% of genes from short scaffolds (< 2000 bps) | 93.33 % |
Associated GOLD sequencing projects | 102 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.39 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (75.000 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil (10.000 % of family members) |
Environment Ontology (ENVO) | Unclassified (27.500 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (34.167 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80 |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 35.71% β-sheet: 0.00% Coil/Unstructured: 64.29% |
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Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.39 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Groundwater Sediment Wetland Sediment Groundwater Estuarine Natural And Restored Wetlands Soil Groundwater Sediment Soil Soil Vadose Zone Soil Terrestrial Soil Tropical Forest Soil Serpentine Soil Switchgrass Rhizosphere Soil Agricultural Soil Soil Grasslands Soil Forest Soil Hardwood Forest Soil Soil Soil Soil Natural And Restored Wetlands Tropical Forest Soil Corn, Switchgrass And Miscanthus Rhizosphere Switchgrass Rhizosphere Soil Groundwater Sand Arabidopsis Rhizosphere Switchgrass Rhizosphere Arabidopsis Thaliana Rhizosphere Arabidopsis Rhizosphere Populus Rhizosphere Rhizosphere |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
KansclcFeb2_03539130 | 2124908045 | Soil | MHMNEAAYRGFRQDELEYQFNPRVSVPEYPELAKVRAAQARKVRESAKS |
SwBSRL2_0853.00007720 | 2162886013 | Switchgrass Rhizosphere | MRDLTYKSYQQDQLEFQYNPRESVPDYPELAKRRA |
SwBSRL2_0712.00002480 | 2162886013 | Switchgrass Rhizosphere | MRDLTYKSYQQDQLEFQYNPRESVPEYPELAKRRA |
SwBSRL2_0784.00004940 | 2162886013 | Switchgrass Rhizosphere | MRDLTYKSYQQDQLEFQYNPRESVPDYPELAKRRADASRKARSTL |
ICCgaii200_10955712 | 2228664021 | Soil | MNETVYKGFGPDEMEFQYNPRVSVPEYPELARVRAAQ |
INPgaii200_06724652 | 2228664022 | Soil | MNEPAYKGFRLDEMEYQYNPRVSVPEYPELAKMRAA |
AF_2010_repII_A01DRAFT_10628002 | 3300000580 | Forest Soil | MNETIYKGFRKDELEYQYNPRESVPEYPALSKRKAEQARKVRETAK |
AF_2010_repII_A1DRAFT_100283581 | 3300000597 | Forest Soil | MNETIYKGFRKDELEYQYNPRESVPEYPALSKRKAEQARK |
AF_2010_repII_A1DRAFT_101293332 | 3300000597 | Forest Soil | MNEIVYEGFSKHELEYQYNPRESVPEYPELAKKRAEA |
JGI11643J11755_114696601 | 3300000787 | Soil | MTETGYRGFRLEEMEYQYNPRESVPEYPQLAKKRAEEA |
JGI1027J11758_125437972 | 3300000789 | Soil | MTGIGYKSFRQDELEYQYNPRESVPEYPAISKRKAEQAR |
JGI10213J12805_103922383 | 3300000858 | Soil | MIDTGYRGFRLEEMEYQYNPRESVPEYPQLAQKRAEE |
JGI10216J12902_1001012611 | 3300000956 | Soil | MSDQLYRGFRPDEMEYQYNPRESVPEYPELAKERAAQAKKVRDS |
C687J29651_102020161 | 3300002407 | Soil | MNEVGYKGFRADELEYQFNPRVSVPEFPELSKVRAALSRKVRESAKSW |
Ga0062593_1014130781 | 3300004114 | Soil | MNESGYKGFRQDELEYQYNPRVSVPEYPELAKVRAAQARKVR |
Ga0062381_102411281 | 3300004808 | Wetland Sediment | MSELYKGFRPDEMEYQYQPRESVPEFPELSKIRAAQAKKVRETAKSWLNIAYGSSGRESLDIYAADKPGG |
Ga0062594_1020108281 | 3300005093 | Soil | MNEAVYRGFRQDQLEYQYNPRSSVPEYPELAKIRATQARKVRESAKSWLNIAYGA |
Ga0066672_102000632 | 3300005167 | Soil | MSDLGYKNFHRDEIEYQYNPRVSVPEFPQLAKKRSEESRK |
Ga0068993_100862852 | 3300005183 | Natural And Restored Wetlands | LSDISYKGFRADEMEFQYNPRESVPEYPELAKIRAAQARKVRETAQSWLNV |
Ga0065705_103827372 | 3300005294 | Switchgrass Rhizosphere | MRDLTYKSYQQDQLEFQYNPRESVPEYPELAKRRAEASRKARSTLKSW |
Ga0065705_107711831 | 3300005294 | Switchgrass Rhizosphere | MNEAIHSGFHQDELEYQYNPRVSVPEYPELAKIRAAQARKVRESAKSWLNIAYG |
Ga0066388_1051999032 | 3300005332 | Tropical Forest Soil | MNEIIYKGFRKDELEYQYNPRESVPEYLQLSKRKAEQARARDG* |
Ga0070689_1008400423 | 3300005340 | Switchgrass Rhizosphere | MNEAVYRGFRQDQLEYQYNPRISVPEYPELAKIRATQARKVRESAKSWLNIAYGASPRERLD |
Ga0070705_1007347602 | 3300005440 | Corn, Switchgrass And Miscanthus Rhizosphere | MNEAIHSGFHQDELEYQYNPRVSVPEYPELAKIRAAQARKVRESAKSWLNIAYGASPRER |
Ga0066682_105079861 | 3300005450 | Soil | MHEKAYKEFRQDEMEYQYNPRVSVPEYPELAKIRAAQARKVRESAKSWLDI |
Ga0066905_1004444682 | 3300005713 | Tropical Forest Soil | MNEIVYEGFSKHELEYQYNPRESVPEYPELAKKRAE |
Ga0066903_1078754352 | 3300005764 | Tropical Forest Soil | MNEIVYEGFSKHELEYQYNPRESVPEYPELAKKRAEASRKARSNLK |
Ga0068858_1025656232 | 3300005842 | Switchgrass Rhizosphere | MEAIAYKGFRHDEMEYQYNPRESVPEYPELAKKRAAESKKVRETAK |
Ga0068862_1022019762 | 3300005844 | Switchgrass Rhizosphere | MNETEYKGFRPDEMEYQYNPRVSVPEYPELAKVRAAQA |
Ga0075428_1009281461 | 3300006844 | Populus Rhizosphere | MPEIVYKGFRSDELEYQYNPRESVPEYPELAKLRAEASRK |
Ga0075428_1012621771 | 3300006844 | Populus Rhizosphere | MNEPAYKGFRQVEMEYQYNPRVSVPEYPELAKMRAAQARKVRDSAKSWLN |
Ga0075431_1007486863 | 3300006847 | Populus Rhizosphere | MNEPAYKGFGQDEMEYQYNPRVSVPEYPELAKMRAAQARK |
Ga0075420_1010059531 | 3300006853 | Populus Rhizosphere | MSDQLYKGFRPDELEYQYNPRESVPEYPELAKVRAA |
Ga0075434_1003895361 | 3300006871 | Populus Rhizosphere | MNEAIHSGFHQDELEYQYNPRVSVPEYPELAKIRAAQARKVRESAKSWLNIAYGASPRERLD |
Ga0079217_100051125 | 3300006876 | Agricultural Soil | MIETYKRFRPDEMEYQYNPRVSAPEYPELAKVRAA |
Ga0079216_100450451 | 3300006918 | Agricultural Soil | MSVIPYKGFRPDEMEYQYNPRVSVPEYPELAKVRAAQAKKVRESAK |
Ga0075419_110250152 | 3300006969 | Populus Rhizosphere | MSDQLYKGFRPDELEYQYNPRESVPEYPELAKVRAAQAKKVRD |
Ga0066709_1026818721 | 3300009137 | Grasslands Soil | MNETAYKGFRQDEMEYQYNPRVSVPEYPELAKVRSAQARKVRESAKSW |
Ga0114129_102135394 | 3300009147 | Populus Rhizosphere | MKGERILIMSEPAYKGFRQDEMEFQYNPRVSVPEFPELAKVRSA |
Ga0114129_123039042 | 3300009147 | Populus Rhizosphere | MSDSGYKGFRPEEMEYQYNPRESVPEYPQLAKRRAEQARRVRESA |
Ga0105347_13566141 | 3300009609 | Soil | MSDRAYKSFQQDELEYQYNPRVSVPEFPELAKVRSARSRRVRESAKSWLDIAYGASPRET |
Ga0126374_106608781 | 3300009792 | Tropical Forest Soil | MTEITYKGFRQDELEYQYNPRESVPEFPEISKRKAEQARK |
Ga0126304_111683122 | 3300010037 | Serpentine Soil | MSDLYKGFRPDEMEYQYNPRESVPEYPELAKVRAA |
Ga0126384_108349041 | 3300010046 | Tropical Forest Soil | MNEIGYEGFSKHELEYQYNPRESVPEYPELAKKRAEASRKARSN |
Ga0126382_115658882 | 3300010047 | Tropical Forest Soil | MSEIVYKGFRKDELEYQYNPRESVAEYPQLSKRKADQ |
Ga0126382_117016332 | 3300010047 | Tropical Forest Soil | MNEIVYEGFSKHELEYQYNPRESVPEYPELAKKRAEASRK |
Ga0126370_125170831 | 3300010358 | Tropical Forest Soil | MDEIIYKGFRQDELEYQYNPRESVVEYPQLSKRKAEQARKVRETAKSWLN |
Ga0126376_111698162 | 3300010359 | Tropical Forest Soil | MAMNDVVYKCFRKNELEYQYNPRESVPEYPQLSKRKAEQARARDG* |
Ga0126378_103592443 | 3300010361 | Tropical Forest Soil | MNDAAYKGFRQDELEYQYNPRVSVPEYPELAKVRAAQARKVRERAKSWLNIAYGASPRE |
Ga0126377_109687091 | 3300010362 | Tropical Forest Soil | MSEVTYKNYRADELEYQYNPRKSVPEYPQLSKRKAEQARARDG* |
Ga0126379_122940541 | 3300010366 | Tropical Forest Soil | MNEIVYEGFSKHELEYQYNPRESVPEYPELAKKRAEASRKARSNLKS |
Ga0134125_101992081 | 3300010371 | Terrestrial Soil | MNEAIHSGFHQDELEYQYNPRVSVPEYPELAKIRAAQARKVRESAK |
Ga0126381_1007853621 | 3300010376 | Tropical Forest Soil | MTEITYKGFRQDELEYQYNPRESVPEFPEISKRKAEQARKVRETVK |
Ga0134124_116387812 | 3300010397 | Terrestrial Soil | MNEAVYRGFRQDQLEYQYNPRSSVPEYPELAKIRATQARKVRESAKSWLNI |
Ga0126383_110020551 | 3300010398 | Tropical Forest Soil | MNEIVYEGFSKHELEYQYNPRESVPEYPELAKKRAEASRKARSNLKSW |
Ga0126383_111663271 | 3300010398 | Tropical Forest Soil | MNEAAYKDFRQDELEYQYNPRVSVPEYPELAKVRSAQARKVRESAKSWLNIAYGASPRER |
Ga0134121_109817962 | 3300010401 | Terrestrial Soil | MEAIAYKGFRHDEMKYQYNPRESVPEYPELAKKRAAESKKVRETA |
Ga0137457_12799011 | 3300011443 | Soil | MSELYKGFRPDEMEYQYNPRESVPEYPELAKVRAAQAKKVRETAKFWLTISYGSSPREMLDI |
Ga0137382_100554363 | 3300012200 | Vadose Zone Soil | MNETAYKGFRQDEMEYQYNPRVSVPEYPELAKVRSAQARKVRESAKSWLN |
Ga0137374_101166221 | 3300012204 | Vadose Zone Soil | MSEPAYRGFRQDEMEFQYNPRVSVPEFPELARIRSAQARKV |
Ga0137381_118042321 | 3300012207 | Vadose Zone Soil | MNETAYKGFRQDEMEYQYNPRVSVPEYPELAKVRS |
Ga0137387_104013301 | 3300012349 | Vadose Zone Soil | MSELAYKNFRGDELEYQYNPRKSVREYPGLAKKRAE |
Ga0137367_106002472 | 3300012353 | Vadose Zone Soil | MNEPAYKGFRQDEMEFQYNPRVSVPEFPELARIRSA |
Ga0137366_109396911 | 3300012354 | Vadose Zone Soil | MSGTKYKGFSKDELEYQYNPRESVPEYPELAKRRAEQSRKARSTL |
Ga0157331_10034263 | 3300012486 | Soil | MNEAVYRGFRQDELECQYNPRISVPEYPELAKVRAAQARKVR |
Ga0157313_10209861 | 3300012503 | Arabidopsis Rhizosphere | MNEAVYRGFRQDELEYQYNPRVSVPEYPELAKVRAAQARKVRESAKSWLNIA |
Ga0157298_100616071 | 3300012913 | Soil | MNEAIHSGFHQDELEYQYNPRVSVPEYPELAKIRAAQARKVRESAKSWLNI |
Ga0137407_117032721 | 3300012930 | Vadose Zone Soil | MSEPAYKGFRQDEMEFQYNPRVSVPEFPELARIRSAQARKVRDSA |
Ga0164303_109291341 | 3300012957 | Soil | MNETAYKGFRLGEMEYQYNPRVSVPEYPELAKMRAAQARKVRASAKS |
Ga0075349_10421632 | 3300014305 | Natural And Restored Wetlands | MSELYKGFRPDEMEYQYNPRESVPEYPELAKVRAAQANRRSPG* |
Ga0180095_10750802 | 3300014871 | Soil | MSESAYRNLRPDELEFQYNPRVSVPEFPELAEVRSAKSRKVRDSAKSWLNIA* |
Ga0137403_109533313 | 3300015264 | Vadose Zone Soil | MNETAYKGFRLDEMEYQYNPRVSVPEYPELAKMRA |
Ga0132257_1032490392 | 3300015373 | Arabidopsis Rhizosphere | MNEAVYRRFRQDELEYQYNPRISVPEYPELAKVRAAQARKVRESAKSWLNIAY |
Ga0132257_1038987402 | 3300015373 | Arabidopsis Rhizosphere | MNEAIHSGFHQDELEYQYNPRVSVPEYPELAKIRA |
Ga0132255_1014442451 | 3300015374 | Arabidopsis Rhizosphere | MNETAYKGFREDEMEYQYNPRVSVPEYPELAKVRAAQARK |
Ga0132255_1044050012 | 3300015374 | Arabidopsis Rhizosphere | MNEAVYRRFRQDELEYQYNPRISVPEYPELAKVRAAQARKVRESAKSWLNIAYGASP |
Ga0184634_104951701 | 3300018031 | Groundwater Sediment | MSEIAYKGFSKGEMEYQYNPRESVPEYPELAKLRA |
Ga0184638_10394211 | 3300018052 | Groundwater Sediment | MSELSYKAYPQDELEFQYNPRVSVPEYPQLAEVRSAKSRRVRDSAKSWLNI |
Ga0184640_102191341 | 3300018074 | Groundwater Sediment | MSDNLYKGFRQDEMEYQYNPRVSVPEFPELAKVRSAQARKVRESAKSW |
Ga0184612_103097892 | 3300018078 | Groundwater Sediment | MSDNLYKGFRQDQMEYQYNPRVSVPEFPELAKIRSAQARK |
Ga0184625_100710271 | 3300018081 | Groundwater Sediment | MNEIRPNGFPKDELEYQYNPRESVPEYPELAKRRAE |
Ga0184639_100511231 | 3300018082 | Groundwater Sediment | MSDQLYKGFRPDEMEFQYNPRVSVPEFPELAKVRAAQARKV |
Ga0190271_102195201 | 3300018481 | Soil | MSDQLYKGFRPDEMEYQYNPRESVPEYSELAKVRAAQANKVRETAKSWLNISYGSSP |
Ga0210380_100832952 | 3300021082 | Groundwater Sediment | MSDQLYKGFRPHEMEYQYNPRESVPEYPELAKVRAAQAKKVRD |
Ga0210339_10232041 | 3300021332 | Estuarine | MSDQLYKGFRQDEMEYQYNPRESVPEFPELAKIRAAQAKKVRETAKS |
Ga0209109_103592722 | 3300025160 | Soil | MNDLGYKGFHQDELEYQYNPRVSVPEFPELSKLRSAQSRKVRESAKSW |
Ga0209108_101293012 | 3300025165 | Soil | MSEVVYKGFHQDELEYQFNPRVSVPEFPELSKVRA |
Ga0209321_103089401 | 3300025312 | Soil | MSDVGYKGFRQDELEYQYNPRVSVPEFPELAKVRAALS |
Ga0209640_109108491 | 3300025324 | Soil | MSEIGYRGFRQDELEYQFNPRVSVPEFPELSKVRAA |
Ga0207693_114657262 | 3300025915 | Corn, Switchgrass And Miscanthus Rhizosphere | MSEIIYKGFRQDELEYQYNPRESVPEYPALAKKRGEASRKVRSTL |
Ga0208911_10125961 | 3300026051 | Natural And Restored Wetlands | MSEFAYRNFRQDELEFQYNPRVSVPEFPELAKARSAQARKVRES |
Ga0208290_10050101 | 3300026066 | Natural And Restored Wetlands | MNENGYKGFRQDELEYQYNPRVSVPDYPELAKVRAAQSRKVR |
Ga0209969_10350383 | 3300027360 | Arabidopsis Thaliana Rhizosphere | MNENAYKGFRQDELEYQYNPRVSVPEYPELAKVRAAQSRKVRERAK |
Ga0209995_10461883 | 3300027471 | Arabidopsis Thaliana Rhizosphere | MNESGYKGFRQDELEYQYNPRVSVPEYPELAKVRAAQSRKVRESARS |
Ga0209684_10128881 | 3300027527 | Tropical Forest Soil | MNEIIYKGFRKDELEYQYNPRESVPEYLQLSKRKAEQARARDG |
Ga0209874_11083271 | 3300027577 | Groundwater Sand | MSGTAYKGFSKDELEYQYNPRVSVPEYPELAKRRAEASRKAR |
Ga0209464_103037931 | 3300027778 | Wetland Sediment | MSELYKGFRPDEMEYQYQPRESVPEFPELSKIRAAQAKKVRETAKSWLN |
Ga0209074_104994351 | 3300027787 | Agricultural Soil | MNEAIHRGFHQDELEYQYNPRVSVPEYPELAKIRAAQARKVRESAKSWLNIAYGASP |
Ga0209726_100340851 | 3300027815 | Groundwater | MSDQLYKGFRPDEMEYQYNPRESVPEFPELAKVRSAQAKK |
Ga0209797_100980381 | 3300027831 | Wetland Sediment | MSDQLYKGFRPDEMEYQFNPRASVPEFPELAKIRAAQAKKVRETA |
Ga0207428_111312332 | 3300027907 | Populus Rhizosphere | MNEAIHSGFHQDELEYQYNPRVSVPEYPELAKIRAAQARKVRESAKS |
Ga0209382_102373153 | 3300027909 | Populus Rhizosphere | MNEIRPNGFPKDELEYQYNPRESVPEYPELAERRAEESRKAR |
Ga0209382_107738393 | 3300027909 | Populus Rhizosphere | MNEAAYRGFRQDELEYQYNPRVSVPEYPELAKVRAAQARKVRESAKSWLNI |
Ga0302046_107376812 | 3300030620 | Soil | MNESAYEGFRQDDLEYQYNPRVSVPEYPELAKLRAAQARKVRQ |
Ga0310886_101125053 | 3300031562 | Soil | MTQLYKGFRPDEMEYQYNPRESVPEYPELAKVRAA |
Ga0307469_103172112 | 3300031720 | Hardwood Forest Soil | MTEISYKDFRKDELEYQYNPRESVPEYPELAKKRAEPAGRR |
Ga0307469_111439031 | 3300031720 | Hardwood Forest Soil | MSKPAYKGFRQDEMEFQYNPRVSVPEFPELARIRSAQARK |
Ga0307473_103681711 | 3300031820 | Hardwood Forest Soil | MSEIIYKGFRQDELEYQYNPRESVPEYPALAKKRAEASRK |
Ga0307413_104107951 | 3300031824 | Rhizosphere | MIDAGYRGFRQDELEYQYNPRESVPEYPQLAKKRAEQARRVRRSAKSWLGVPYGSSPREKLD |
Ga0310904_101714353 | 3300031854 | Soil | MNETAYKGFRLDEMEYQYNPRVSVPEYPELAKMRAAQARKVR |
Ga0310904_111351821 | 3300031854 | Soil | MNEAVYRRFRQDELEYQYNPRISVPEYPELAKVRAAQARKVRESAKSW |
Ga0307407_110469141 | 3300031903 | Rhizosphere | MIDAGYRGFRQDELEYQYNPRESVPEYPQLAKKRAEQARR |
Ga0214473_117082481 | 3300031949 | Soil | MSESAYRNFRQDELEFQYNPRVSVPEYPQLAEVRSAKSRTVRDSAKSWLNIAYGTSAREA |
Ga0326597_114562161 | 3300031965 | Soil | MSDQLHKGFRPDEMEYQYNPRESAPEYPELAKVRAAQAKKVRDSARSWLNVA |
Ga0310903_102372011 | 3300032000 | Soil | MNEPAYKGFGQDEMEYQYNPRVSVPEYPELAKMRAAQARKVRDSAKS |
Ga0307471_1006083151 | 3300032180 | Hardwood Forest Soil | MNEMIYKGFRQDELEYQYNPRESVPEYPELAKKRG |
Ga0307472_1005180602 | 3300032205 | Hardwood Forest Soil | MSEIIYKGFRQDELEYQYNPRESVPEYPALAKKRGEASRKVR |
Ga0307472_1019070632 | 3300032205 | Hardwood Forest Soil | MNEMIYKGFRQDELEYQYNPRESVPEYPELAKKRAEPAGRR |
Ga0335080_104869792 | 3300032828 | Soil | MNEKIYKTFRQDELEYQYNPRASVADYPQLSKRKAEQARKVRE |
Ga0316613_108422522 | 3300033434 | Soil | MTELYKGFRPDEMEYQYNPRESVPEYPELAKVRAAQAKKVR |
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