Basic Information | |
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Family ID | F073186 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 120 |
Average Sequence Length | 43 residues |
Representative Sequence | MVNNTSKIDIKNGLHIKSHPPVSIEKPFSKTHAPVIGLMLDRNF |
Number of Associated Samples | 93 |
Number of Associated Scaffolds | 120 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 0.00 % |
% of genes near scaffold ends (potentially truncated) | 20.83 % |
% of genes from short scaffolds (< 2000 bps) | 75.00 % |
Associated GOLD sequencing projects | 85 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.14 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (77.500 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh (55.833 % of family members) |
Environment Ontology (ENVO) | Unclassified (55.833 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) (95.833 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70 |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 4.17% β-sheet: 0.00% Coil/Unstructured: 95.83% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.14 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Aqueous Seawater Marine Surface Water Freshwater To Marine Saline Gradient Marine Seawater Estuarine Salt Marsh Marine Estuarine Water Pelagic Marine Seawater Pelagic Marine Pond Water Saline Marine Methane Seep Sediment |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
JGI20152J14361_100892682 | 3300001344 | Pelagic Marine | MVNNTSKIDIKNGLHIKSKPPFSIKKPFSKTHAPVFVLMLDGNF* |
GOS2229_10562832 | 3300001963 | Marine | MVNNTSKIDIKNGLHIKSHPPVSIEKLFSKTHAPVFGLMLDGNF* |
JGI26080J50196_10821352 | 3300003345 | Marine | MVNNSSKINIKSGLHIKSHPHVSTEKPFSKTHAPEIGIEMLEKF* |
JGI26086J50260_1000009142 | 3300003410 | Marine | FMVNNTSKIDIKNGLHIKSHPHVPIEKPFSITHAPLYGLMLDGNFWLLN* |
JGI26084J50262_10497553 | 3300003427 | Marine | MVNNTSKIDIKNGLHIKYHPPVSIEKPFSKTHAPVFGLMLNGNF* |
Ga0065726_100422 | 3300004369 | Saline | MINNISKIDIKNGLYIKSHILVSIEKPFSKTHAPVFGIEVVEKF* |
Ga0076923_1005732 | 3300005735 | Marine | MINNSSKIDIKNGLYIKYHPPVPIEKPFSKTHAPVFGIIMDRNF* |
Ga0076923_1047811 | 3300005735 | Marine | MINNSSKIDIKNGLHIKFHPPVSIEKLFSKTHAPVFGFDVPEKL* |
Ga0078893_102521184 | 3300005837 | Marine Surface Water | MVNNSSKIDIENGLHIKSQPHVSIEKPFSKTHAPVFGLMLD* |
Ga0075474_100862682 | 3300006025 | Aqueous | MVNNSPKINIKSGLHIKSHPHVSTEKPFSKTHAPEIGIEMLEKF* |
Ga0075475_100765953 | 3300006874 | Aqueous | MVNYTSKIDIKDGLYIKSHLLVSIEKPFSKTHAAVFVLMLDVNF* |
Ga0075480_102089422 | 3300008012 | Aqueous | MVNNSSKINIKSGLHIKSHPNVSTEKPFSKTHAPEIGIEMLEKF* |
Ga0102960_10080252 | 3300009000 | Pond Water | MVNNTSKIDIKNGLHIKSHPPVSIEKPFSKTHAPVFGLEVLEKF* |
Ga0102960_11014201 | 3300009000 | Pond Water | MVNNTSKIDIKNGLHIKSHPHVPIEKPFSITHAPLYGLMLDGNFWLLK* |
Ga0102963_10004752 | 3300009001 | Pond Water | MVNNSSKINIKSGLHIKSHPHVSTEKPFSKTNALEIGIEMLEKF* |
Ga0102814_107827512 | 3300009079 | Estuarine | MVNNSSKINKKSGLHIKSHPHVSTEKPFSKTHAPEIGIEMLEKF* |
Ga0115563_13319022 | 3300009442 | Pelagic Marine | MVNNTSKIDIKNELHIKSHPHDSIEKPFSKTHAPVFGIGVLEKF* |
Ga0115565_101941902 | 3300009467 | Pelagic Marine | LVNNVSKIDIKNELHIKSHPHDSIEKPFSKTHAPVFGIGVLEKF* |
Ga0115554_10510033 | 3300009472 | Pelagic Marine | MVNNTSKIDIKNGLHIKSHSPVPIEKPFSKTHAPVFWLILDGNF* |
Ga0115571_12015691 | 3300009495 | Pelagic Marine | MVNNTSKIDIKNGLHIKSHSPVPIEKPFSKTHTPVFGLMLDRNF* |
Ga0115571_12175141 | 3300009495 | Pelagic Marine | RVVFSCLQDIENGLHIKSHIPYSIEKPFYKTHAPVFGLILDVNF* |
Ga0129348_13125371 | 3300010296 | Freshwater To Marine Saline Gradient | FFHINNIKISLHIKSHPHVSTEKPFSKTHALVFGIGVLENF* |
Ga0129324_1000136515 | 3300010368 | Freshwater To Marine Saline Gradient | MINNSPKIERKKGLHIKLYSPIPIEKPFSKTHATV* |
Ga0136549_102175621 | 3300010389 | Marine Methane Seep Sediment | MVNNTSKIDIKNGLHIKSHPPVLIEKPFPKTHALVFRLMLAGIF* |
Ga0129352_109688181 | 3300012528 | Aqueous | NRSKIDIKNGLHIKSHPPVLIEKPFSKTHALVLV* |
Ga0182093_12123612 | 3300016745 | Salt Marsh | MVNNTSKIDIKNGLHIKSHPHVSIEKPFPKTHAPVFGLMLDGNF |
Ga0182082_12068062 | 3300016771 | Salt Marsh | MINSSSKIDIKNGLYIKYHLPVPIEKPFSKTHAPEIGIGVFEKF |
Ga0182046_14894571 | 3300016776 | Salt Marsh | MVNNTSKIDIKNGLYIKSHPHASTEKPFSKTHARVFWTGVLEKI |
Ga0180120_100889733 | 3300017697 | Freshwater To Marine Saline Gradient | MINNISKIDIKNGLHIKSHPPISIEKPFPKTHAPEFGLMLD |
Ga0180120_101499463 | 3300017697 | Freshwater To Marine Saline Gradient | MVNNTLKIDIKNGLHIKSKPPFSIKKPFSKTHAPVFV |
Ga0181565_101123451 | 3300017818 | Salt Marsh | MVNNTSKIDIKNGLHIKSQPPVPIEKPFSKTHAPVFVLMLD |
Ga0181565_107663252 | 3300017818 | Salt Marsh | MVNNTSKIDIKNGLYIKSHPYASTEKPFSKTHALVFWTGVLEKI |
Ga0181565_110070982 | 3300017818 | Salt Marsh | MVNNTSKIDIKNGLHIKSHPPVLIEKPFSKTHALVFRLMLAGIF |
Ga0181607_101615572 | 3300017950 | Salt Marsh | MVNNSSKINKKSGLHIKSHPHVSTEKPFSKTHAPEIGIEMLEKF |
Ga0181607_105342322 | 3300017950 | Salt Marsh | MVNNTSKIDIKNGLHIKSQPPISIEKPFSKTHAPVIGLEVLEKF |
Ga0181607_107349882 | 3300017950 | Salt Marsh | MINNSSKIDIKNGLHIKSQPPVSIEKQFSKTHAPVFGLMLDGNF |
Ga0181577_100519814 | 3300017951 | Salt Marsh | FMINNSSKIDIKNGLYIKYHPPVPIEKSFSKTHAPVFGLMLDRNF |
Ga0181577_107337542 | 3300017951 | Salt Marsh | MINNTSKIDIKNGLHIKSHPPVLIEKPFSKTHAPVFGLMLYGNF |
Ga0181583_101220591 | 3300017952 | Salt Marsh | MVNNTSKIDIKNGLHIKSHHPVSIEKPFSKTHAPVFGLMLD |
Ga0181571_100037772 | 3300017957 | Salt Marsh | MVNNTSKIDIKNGLHIKSHSLVPIEKPFPITHAPVFEKGVLKKF |
Ga0181571_104683802 | 3300017957 | Salt Marsh | FMVNNTSKIDIKNGLHIKSHPPVLIEKPFSKTHAPVFVLMLD |
Ga0181582_101765261 | 3300017958 | Salt Marsh | MINCNSKIDIKNGLYIKSHPPVSIEKPFSKTHAPVFGIGVLEKFY |
Ga0181581_108922702 | 3300017962 | Salt Marsh | NNTSKIDIKNGLHIKSHPPVLIEKPFSKTHAPVFGLMLYGNF |
Ga0181589_102731912 | 3300017964 | Salt Marsh | MINNFSKIDIKNGLYIKYHLPVPIEKPFSKTHAPVFGIIMDRNF |
Ga0181569_107994502 | 3300017986 | Salt Marsh | MFNNTSKIDIKNGLHIKSQPPVPIEKPFSETHALVFVLMLDGNF |
Ga0181600_1000022538 | 3300018036 | Salt Marsh | MVNNTSKIDIKNGLHIKSKPPFSIEKPFSKTHAPVFGIGVLKKF |
Ga0181600_102345782 | 3300018036 | Salt Marsh | MVKNTSKIDIKNGLHIKSHSLVPIEKPFPITHAPVFGLMLDGNF |
Ga0181600_104472612 | 3300018036 | Salt Marsh | MVINTSKIDIKNGLHIKSHPHVSIEKPFPKTHAPVFGLMLGGNF |
Ga0181579_100032112 | 3300018039 | Salt Marsh | MVNNTSKIDIKNGLHIKSHSLVPIEKPFPVTHAPVFEKGVLKKF |
Ga0181601_104256051 | 3300018041 | Salt Marsh | MVNNSSKINIKSGLHIKSHPHVSTEKPFSKTHAPEIGIEMLEKF |
Ga0181561_101007213 | 3300018410 | Salt Marsh | MINNSSKIDIKNGLYIKYHLPVPIEKPFSKTHAPVFGIIMDRNF |
Ga0181560_101020743 | 3300018413 | Salt Marsh | MVKNTSKIDIKNGLHIKSHSLVPIEKPFPITHAPVFEKGVLKKF |
Ga0181560_102001692 | 3300018413 | Salt Marsh | MVNNTSKIDIKNGLHIKSHPPVLIEKPFSKTHALVFGIIMDRSF |
Ga0181559_105562091 | 3300018415 | Salt Marsh | NSSKIDIKNGLYIKYHLPVPIEKMFSKTHAPLFRLMLD |
Ga0181558_101291781 | 3300018417 | Salt Marsh | NSSKIDIKNGLYIKYHLPVPIEKPFSKTHAPLFRLMLD |
Ga0181558_102243682 | 3300018417 | Salt Marsh | MIYNTPKVRIKNGLHIKFHPPVPIEKPFSKTHAPVFGLMLDRNF |
Ga0181568_101102534 | 3300018428 | Salt Marsh | MINNSSKIDIKNGLYIKYHLPVPIEKPFSKTHAPMFGLMLDRNF |
Ga0181562_105505321 | 3300019459 | Salt Marsh | MVNNTSKIDIKNGLYIKSHPYASTEKPFSKTHAPVSGLMLDRNF |
Ga0181555_10523363 | 3300020051 | Salt Marsh | MVNNKSKLDIKNGLYINYHPPFSTEKPFSKTHAPVFGIGVVEKF |
Ga0181554_12002152 | 3300020052 | Salt Marsh | MVNNTSKIDIKNGLHIKSHSLVPIEKPFPITHAPVFGLMLDGNF |
Ga0181595_100554753 | 3300020053 | Salt Marsh | MVNNTSKIDIKNGLHIKSHPPVSIEEPFSKTHAPVFGLMLNENFMLLK |
Ga0181575_100000142 | 3300020055 | Salt Marsh | MINNTSNIIIKNGLHIKSHPPVSIEKSFSKTHAPVFGIGVLEKF |
Ga0181575_101235263 | 3300020055 | Salt Marsh | MINNSSKIDIKNGLYIKYHLPVPIEKPFSKTHAPVFGLMLDRNF |
Ga0181575_104391131 | 3300020055 | Salt Marsh | MVNNTSKIDIKNGLYIKSHPYASTEKPFSKTHAPVFGLMLDRNF |
Ga0181602_100220744 | 3300020173 | Salt Marsh | MVNNTSKIDIKNGLHIKSHPHVPIEKSFSITHAPVFGIGVLEKF |
Ga0181556_11574561 | 3300020176 | Salt Marsh | MVNNTSKIDIKNGLYIKSHPPVSIEKTFSKTHAPVFGLMLNRSF |
Ga0181596_100003323 | 3300020177 | Salt Marsh | MVNNTSKIDIKNGLHIKSHPPVSIEKPFYKTHAPVFGLMLNENFMLLK |
Ga0181596_100279195 | 3300020177 | Salt Marsh | MINNTSKINIKNGLHIKSQPPISIEKRFSKTHTPVFGIGVPRYLFHLHLL |
Ga0181596_103553721 | 3300020177 | Salt Marsh | MVNNTSKIDIKNGLHIKSQPPISIEKPFSKTHAPVFGLEVLEKF |
Ga0181599_10099712 | 3300020178 | Salt Marsh | MVNNTSKIDIKNGLHIKSHPHVSIEKPFPKTHAPVFGLMLGGNF |
Ga0181599_12253293 | 3300020178 | Salt Marsh | MVNNTSKIDIKNGLYIKSHPYASTEKPFSKTHAPVFGLMLD |
Ga0206129_100495924 | 3300020182 | Seawater | MVNNTSKIDIKNGLHIKSKPPFSIKKPFSKTHAPVFVLMLDGNF |
Ga0181573_102488902 | 3300020184 | Salt Marsh | MVNNTSKIDIKNGLHIKSHPPVLIEKPFSKTHAPVFGLMLYGNF |
Ga0206131_103524182 | 3300020185 | Seawater | MVNNTSKIDIKNGLHIKSHSPVPIEKPFSKTHTPVFGLMLDRNF |
Ga0181605_101278301 | 3300020188 | Salt Marsh | MVNNTSKIDIKNGLHIKSHPPVSIEKPFSKTHAPVFGLMLNENFMLLK |
Ga0181578_103472732 | 3300020189 | Salt Marsh | MVNNTSKIDIKNGLYIKSHPYASTEKPFSKTHAPVFGLMLDR |
Ga0181604_100941921 | 3300020191 | Salt Marsh | NMVNNTSKIDIKNGLYIKSHPYASTEKPFSKTHALVFWTGVLEKI |
Ga0181598_10341074 | 3300020810 | Salt Marsh | MVNNTSKIDIKNGLHIKSHPPVSIEKPFSKTHAPVFGIGVLKKF |
Ga0213867_11723172 | 3300021335 | Seawater | MVNNTSKIDIKNGLHIKSSTPVSIEKPFYKTHAPVFGLMLDRNF |
Ga0213858_100965363 | 3300021356 | Seawater | MVNNSEKIERNNRLHIKSQPHVSIEKPFSKTHAPVFGTEVLEEF |
Ga0213863_103013112 | 3300021371 | Seawater | MVNNTSKIDIKNGLHIKSKPHVSIEKPFSKTHAPVFVLMLDGNF |
Ga0213869_100039832 | 3300021375 | Seawater | MVNNTSKIDIKNGLHIKSHPPVSIEEPFSKTHAPVFGLMLDRNF |
Ga0213869_100846093 | 3300021375 | Seawater | MINNSSKIDIKNGLYIKYHPPVPIEKPFSKTHAPVFGIIMDRNF |
Ga0213869_102454091 | 3300021375 | Seawater | MVNNTSKIDIKNGLYIKYHPPFSTEKPFPKTHAPVFGIGVVE |
Ga0213869_102959811 | 3300021375 | Seawater | MVNNTSKIDIKNGLYIKYHPLVSIEKPFSKTHAPVFGLMLDRNF |
Ga0213861_100026233 | 3300021378 | Seawater | MVNNTSKIDIKNGLHIKSHPPVSIEKPFSKTHAPVIGLMLDRNF |
Ga0213861_101170213 | 3300021378 | Seawater | MVNNSSKINIKSGLHINSHPHVSTEKPFSKTHAPVFGLMLDGNF |
Ga0222717_103754161 | 3300021957 | Estuarine Water | MVNNTSKIDIKNGLHIKSQPPVSIEKPFSKTHAPVFGLMLNGNF |
Ga0255771_11719891 | 3300022900 | Salt Marsh | MINNFSKIDIKNGLYIKYHLPVPIEKPFSKTHAPVFGIIM |
Ga0255779_11597182 | 3300022922 | Salt Marsh | MINNSSKIDEKNGLFIKYHLPVPIEKPFSKTHAPVFGIIMDRNF |
Ga0255779_12800481 | 3300022922 | Salt Marsh | MVNNTSKIDIKNGLHIKSHSLVPIEKPFPITHAPVFEK |
Ga0255783_100263601 | 3300022923 | Salt Marsh | MVNNISKIDIKNGLHIKSHSLVPIEKPFPITHAPVFEKGVLKKF |
Ga0255783_101714483 | 3300022923 | Salt Marsh | MINNSSKIDIKNGLYIKYHLPVPIEKPFSKTHALLFGLMLDRNF |
Ga0255773_103742092 | 3300022925 | Salt Marsh | MVNNTSKIDIKNGLHIKSHPPVLIEKPFSKTHAPVFVLMLD |
Ga0255753_11145362 | 3300022926 | Salt Marsh | MVNNTSKIDIKNGLNIKSQPHVSTEKPFSKTHAPVFGLMLNGNF |
Ga0255769_101364312 | 3300022927 | Salt Marsh | VFNNNSKIDSKNGLYIKSYLFLSIEKPFSKTHAPVFGIGVL |
Ga0255781_100423473 | 3300022934 | Salt Marsh | MINNTSNIIIKNGLHIKSHPPVSIEKPFSKTHAPVFGIGVLEKF |
Ga0255754_1000008362 | 3300022939 | Salt Marsh | MVNNTSKIDIKNGLHIKSHSLVPIEKPFSITHAPVFEKGVLKKF |
Ga0255754_100834334 | 3300022939 | Salt Marsh | MVNNTSKIDIKNGLHIKSQPPVPIEKPFSKTHAPVLELILYENF |
Ga0255764_101251953 | 3300023081 | Salt Marsh | MVNNTSKIDIKNGLHIKFHPPVLIEKPFSKTHALVFRLMLAGIF |
Ga0255751_101384232 | 3300023116 | Salt Marsh | MVNNTSKIDIKNGLHIKSHPPVLIEKPFPKTHALVFRLMLAGIF |
Ga0255772_102070693 | 3300023176 | Salt Marsh | MINNSSKIDIKNGLYIKYHLPVPIEKPFSKTHAPMFGLM |
Ga0255759_104560752 | 3300023178 | Salt Marsh | VFSYQQDIKNGLHIKSQPPVPIEKPFSKTHAPVLELILYENF |
Ga0255768_100675835 | 3300023180 | Salt Marsh | MVNNTSKIDIKNGLHIKSHPPIPIEKPFSKTHAPVFGIGVLEKF |
Ga0255768_102595331 | 3300023180 | Salt Marsh | VFINNSKIDSKNGLYIKSYLFLSIEKPFSKTHPPVFGIIMDRNF |
Ga0228666_1000011291 | 3300024221 | Seawater | MDFIVFKINNFKDTENELNIKSHPHVSIEKPFSKAHAPVFGLMLDENF |
Ga0233451_101388591 | 3300024301 | Salt Marsh | MIYNTPKVRIKNGLHIKFHPPVPIEKPFSKTHAPVFGIGVLEKF |
Ga0228631_10863691 | 3300024329 | Seawater | MDFIVFKINNFKDTENVLNIKSHPHVSIEKPFSKTHAPVFGLMPD |
Ga0228628_10678222 | 3300024359 | Seawater | MGFIVFMINNFKDIENVLNTKSHPHVSIEKPFSKTHAPVFELMLD |
Ga0209304_10514462 | 3300025577 | Pelagic Marine | MVNNTSKIDIKNGLHIKSKPPFSIKKPFSKTHAPVFVESALEVLGIKLIL |
Ga0208004_11097831 | 3300025630 | Aqueous | NNSPKINIKSGLHIKSHPHVSTEKPFSKTHAPEIGIEMLEKF |
Ga0209136_11021722 | 3300025636 | Marine | MVNNTSKIDIKNGLHIKYHPPVSIEKPFSKTHAPVFGLMLNGNF |
Ga0209652_10989242 | 3300025684 | Marine | MINNTPKDIENGLHIKSNPRVSIEKPFSKTHAPVFGLMLYGNF |
Ga0209653_10033262 | 3300025695 | Marine | MVNNTSKIDIKNGLHIKSHPHVPIEKPFSITHAPLYGLMLDGNFWLLK |
Ga0209137_10130943 | 3300025767 | Marine | MINNTPKDIENGLHIKSNPPVSIEKPFSKTHAPVLELMLD |
Ga0208427_12353831 | 3300025771 | Aqueous | MVNNSPKINIKSGLHIKSHPHVSTEKPFSKTHAPEIGIEMLEKF |
Ga0209223_102625591 | 3300025876 | Pelagic Marine | RVVFSCLQDIENGLHIKSHPLVPIEKPFSKTHAPVLG |
Ga0209534_102382013 | 3300025880 | Pelagic Marine | LVNNVSKIDIKNELHIKSHPHDSIEKPFSKTHAPVFGIGVLEKF |
Ga0209630_102348161 | 3300025892 | Pelagic Marine | MVNNTSKIDIKNGLHIKSHSPVPIEKPFSKTHAPVLG |
Ga0315320_100268892 | 3300031851 | Seawater | VFINNSKIDIKNGLYIKSNPHVSIEKPFSKTHAPLFGLMLDGNL |
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