NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F073084

Metagenome Family F073084

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F073084
Family Type Metagenome
Number of Sequences 120
Average Sequence Length 57 residues
Representative Sequence MTKQDKIIDWICKDYITNIKEKEWPEKSWHYVIEKAFGLHSMTLPELKKFKTELTKED
Number of Associated Samples 69
Number of Associated Scaffolds 120

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 46.67 %
% of genes near scaffold ends (potentially truncated) 30.83 %
% of genes from short scaffolds (< 2000 bps) 92.50 %
Associated GOLD sequencing projects 62
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (62.500 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake
(46.667 % of family members)
Environment Ontology (ENVO) Unclassified
(89.167 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Water (non-saline)
(93.333 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 70.69%    β-sheet: 0.00%    Coil/Unstructured: 29.31%
Feature Viewer
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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 120 Family Scaffolds
PF08708PriCT_1 0.83
PF07862Nif11 0.83



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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A62.50 %
All OrganismsrootAll Organisms37.50 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300002408|B570J29032_109555106Not Available868Open in IMG/M
3300003277|JGI25908J49247_10023900All Organisms → Viruses → Predicted Viral1797Open in IMG/M
3300003388|JGI25910J50241_10097825Not Available813Open in IMG/M
3300003394|JGI25907J50239_1007783All Organisms → Viruses → Predicted Viral2552Open in IMG/M
3300003412|JGI25912J50252_10138519Not Available564Open in IMG/M
3300004240|Ga0007787_10057250Not Available1754Open in IMG/M
3300005580|Ga0049083_10173870Not Available735Open in IMG/M
3300005581|Ga0049081_10102501Not Available1066Open in IMG/M
3300005581|Ga0049081_10107014All Organisms → Viruses → Predicted Viral1040Open in IMG/M
3300005581|Ga0049081_10293540Not Available561Open in IMG/M
3300005582|Ga0049080_10036633All Organisms → Viruses → Predicted Viral1705Open in IMG/M
3300005582|Ga0049080_10067635All Organisms → Viruses → Predicted Viral1226Open in IMG/M
3300005584|Ga0049082_10199347Not Available685Open in IMG/M
3300005584|Ga0049082_10239989Not Available613Open in IMG/M
3300005805|Ga0079957_1020983All Organisms → cellular organisms → Archaea4556Open in IMG/M
3300007734|Ga0104986_1598Not Available18802Open in IMG/M
3300008266|Ga0114363_1099162All Organisms → Viruses → Predicted Viral1051Open in IMG/M
3300008267|Ga0114364_1132031Not Available722Open in IMG/M
3300008448|Ga0114876_1024324Not Available3072Open in IMG/M
3300008448|Ga0114876_1192549Not Available697Open in IMG/M
3300008450|Ga0114880_1215927Not Available629Open in IMG/M
3300009068|Ga0114973_10044100All Organisms → Viruses → Predicted Viral2651Open in IMG/M
3300009068|Ga0114973_10119819All Organisms → Viruses → Predicted Viral1482Open in IMG/M
3300009068|Ga0114973_10122249All Organisms → Viruses → Predicted Viral1464Open in IMG/M
3300009068|Ga0114973_10436015Not Available683Open in IMG/M
3300009068|Ga0114973_10458905Not Available663Open in IMG/M
3300009155|Ga0114968_10178703All Organisms → Viruses → Predicted Viral1242Open in IMG/M
3300009155|Ga0114968_10222140All Organisms → Viruses → Predicted Viral1086Open in IMG/M
3300009155|Ga0114968_10395745Not Available755Open in IMG/M
3300009155|Ga0114968_10692932Not Available534Open in IMG/M
3300010160|Ga0114967_10286252Not Available851Open in IMG/M
3300010354|Ga0129333_10174960All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon1961Open in IMG/M
3300010885|Ga0133913_12981462All Organisms → Viruses → Predicted Viral1130Open in IMG/M
3300011011|Ga0139556_1033769Not Available751Open in IMG/M
3300011995|Ga0153800_1010508Not Available909Open in IMG/M
3300012012|Ga0153799_1060020Not Available693Open in IMG/M
3300015050|Ga0181338_1066128Not Available516Open in IMG/M
3300017701|Ga0181364_1043584All Organisms → cellular organisms → Bacteria711Open in IMG/M
3300017716|Ga0181350_1040201Not Available1265Open in IMG/M
3300017716|Ga0181350_1067081Not Available926Open in IMG/M
3300017716|Ga0181350_1142873Not Available562Open in IMG/M
3300017716|Ga0181350_1149422Not Available546Open in IMG/M
3300017722|Ga0181347_1196141Not Available532Open in IMG/M
3300017723|Ga0181362_1039747All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium992Open in IMG/M
3300017723|Ga0181362_1059069Not Available789Open in IMG/M
3300017723|Ga0181362_1074811Not Available686Open in IMG/M
3300017736|Ga0181365_1148848Not Available555Open in IMG/M
3300017736|Ga0181365_1163135Not Available524Open in IMG/M
3300017761|Ga0181356_1084110All Organisms → Viruses → Predicted Viral1053Open in IMG/M
3300017761|Ga0181356_1152041All Organisms → cellular organisms → Bacteria716Open in IMG/M
3300017761|Ga0181356_1206674All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon578Open in IMG/M
3300017766|Ga0181343_1160509Not Available624Open in IMG/M
3300017774|Ga0181358_1254096Not Available552Open in IMG/M
3300017774|Ga0181358_1263640Not Available537Open in IMG/M
3300017774|Ga0181358_1276706Not Available519Open in IMG/M
3300017780|Ga0181346_1096938All Organisms → Viruses → Predicted Viral1148Open in IMG/M
3300017780|Ga0181346_1231210Not Available654Open in IMG/M
3300017780|Ga0181346_1282609Not Available568Open in IMG/M
3300017784|Ga0181348_1193455Not Available734Open in IMG/M
3300017784|Ga0181348_1257176Not Available601Open in IMG/M
3300017784|Ga0181348_1316046Not Available518Open in IMG/M
3300017785|Ga0181355_1226136Not Available726Open in IMG/M
3300019783|Ga0181361_121699All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon510Open in IMG/M
3300019784|Ga0181359_1054198All Organisms → Viruses → Predicted Viral1543Open in IMG/M
3300019784|Ga0181359_1058602All Organisms → cellular organisms → Bacteria1476Open in IMG/M
3300019784|Ga0181359_1097126All Organisms → cellular organisms → Bacteria1084Open in IMG/M
3300019784|Ga0181359_1130966Not Available884Open in IMG/M
3300019784|Ga0181359_1131016All Organisms → cellular organisms → Bacteria884Open in IMG/M
3300019784|Ga0181359_1145886All Organisms → cellular organisms → Bacteria817Open in IMG/M
3300019784|Ga0181359_1164182All Organisms → cellular organisms → Bacteria749Open in IMG/M
3300019784|Ga0181359_1183293Not Available689Open in IMG/M
3300019784|Ga0181359_1200655All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium643Open in IMG/M
3300019784|Ga0181359_1235268Not Available566Open in IMG/M
3300019784|Ga0181359_1270144Not Available505Open in IMG/M
3300019784|Ga0181359_1272592Not Available501Open in IMG/M
3300020141|Ga0211732_1487505All Organisms → Viruses → Predicted Viral1549Open in IMG/M
3300020159|Ga0211734_10329816Not Available694Open in IMG/M
3300020159|Ga0211734_11102122Not Available594Open in IMG/M
3300020159|Ga0211734_11277142Not Available501Open in IMG/M
3300020160|Ga0211733_10806710Not Available1509Open in IMG/M
3300020172|Ga0211729_10982743Not Available565Open in IMG/M
3300022190|Ga0181354_1035304All Organisms → Viruses → Predicted Viral1646Open in IMG/M
3300022190|Ga0181354_1060281All Organisms → Viruses → Predicted Viral1261Open in IMG/M
3300022190|Ga0181354_1070230All Organisms → Viruses → Predicted Viral1161Open in IMG/M
3300022190|Ga0181354_1084232Not Available1046Open in IMG/M
3300022190|Ga0181354_1138690Not Available769Open in IMG/M
3300022190|Ga0181354_1151363Not Available725Open in IMG/M
3300022190|Ga0181354_1212895Not Available569Open in IMG/M
3300022190|Ga0181354_1228668Not Available540Open in IMG/M
3300022407|Ga0181351_1109852All Organisms → Viruses → Predicted Viral1051Open in IMG/M
3300022407|Ga0181351_1171476Not Available757Open in IMG/M
3300022752|Ga0214917_10021105Not Available5329Open in IMG/M
3300022752|Ga0214917_10026275Not Available4535Open in IMG/M
3300027132|Ga0255110_1027069Not Available974Open in IMG/M
3300027586|Ga0208966_1067212Not Available1006Open in IMG/M
3300027593|Ga0255118_1083925Not Available517Open in IMG/M
3300027608|Ga0208974_1061538Not Available1057Open in IMG/M
3300027608|Ga0208974_1079619Not Available898Open in IMG/M
3300027608|Ga0208974_1159133Not Available568Open in IMG/M
3300027659|Ga0208975_1060385All Organisms → Viruses → Predicted Viral1147Open in IMG/M
3300027736|Ga0209190_1300195Not Available614Open in IMG/M
3300027744|Ga0209355_1369388Not Available521Open in IMG/M
3300027760|Ga0209598_10104212Not Available1327Open in IMG/M
3300027760|Ga0209598_10122152All Organisms → Viruses → Predicted Viral1192Open in IMG/M
3300027836|Ga0209230_10614808All Organisms → cellular organisms → Eukaryota → Opisthokonta607Open in IMG/M
3300027892|Ga0209550_10491009Not Available739Open in IMG/M
3300027963|Ga0209400_1318767Not Available588Open in IMG/M
3300027971|Ga0209401_1030740All Organisms → Viruses → Predicted Viral2599Open in IMG/M
3300027973|Ga0209298_10061559All Organisms → Viruses → Predicted Viral1714Open in IMG/M
(restricted) 3300028044|Ga0247838_1104338All Organisms → Viruses → Predicted Viral1181Open in IMG/M
3300028394|Ga0304730_1172387All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon847Open in IMG/M
(restricted) 3300028559|Ga0247831_1044312All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium2416Open in IMG/M
(restricted) 3300028569|Ga0247843_1136746All Organisms → Viruses → Predicted Viral1030Open in IMG/M
3300031857|Ga0315909_10545489Not Available789Open in IMG/M
3300031873|Ga0315297_10607287All Organisms → cellular organisms → Bacteria919Open in IMG/M
3300031952|Ga0315294_10356579All Organisms → cellular organisms → Bacteria1385Open in IMG/M
3300032053|Ga0315284_11445552Not Available734Open in IMG/M
3300032401|Ga0315275_11581550Not Available702Open in IMG/M
3300032516|Ga0315273_10354868Not Available1983Open in IMG/M
3300034062|Ga0334995_0190752All Organisms → Viruses → Predicted Viral1435Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake46.67%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake15.00%
Freshwater LenticEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic10.83%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater8.33%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater5.00%
SedimentEnvironmental → Aquatic → Freshwater → Lake → Sediment → Sediment4.17%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake2.50%
Freshwater, PlanktonEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton1.67%
FreshwaterEnvironmental → Aquatic → Freshwater → River → Unclassified → Freshwater1.67%
FreshwaterEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater0.83%
Freshwater And SedimentEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment0.83%
LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Lake0.83%
FreshwaterEnvironmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater0.83%
Freshwater To Marine Saline GradientEnvironmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient0.83%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300002408Freshwater microbial communities from Lake Mendota, WI, sample - 15JUL2010 deep hole epilimnion (Lake Mendota Combined assembly, ASSEMBLY_DATE=20140123)EnvironmentalOpen in IMG/M
3300003277Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SDEnvironmentalOpen in IMG/M
3300003388Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.SNEnvironmentalOpen in IMG/M
3300003394Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SNEnvironmentalOpen in IMG/M
3300003412Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.DDEnvironmentalOpen in IMG/M
3300004240Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.SNEnvironmentalOpen in IMG/M
3300005580Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG MI27MSRFEnvironmentalOpen in IMG/M
3300005581Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRFEnvironmentalOpen in IMG/M
3300005582Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRFEnvironmentalOpen in IMG/M
3300005584Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG HU45MSRFEnvironmentalOpen in IMG/M
3300005805Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USAEnvironmentalOpen in IMG/M
3300007734Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015JanEnvironmentalOpen in IMG/M
3300008266Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NAEnvironmentalOpen in IMG/M
3300008267Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-100-LTREnvironmentalOpen in IMG/M
3300008448Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - August 4, 2014 all contigsEnvironmentalOpen in IMG/M
3300008450Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - Oct 27, 2014 all contigsEnvironmentalOpen in IMG/M
3300009068Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaGEnvironmentalOpen in IMG/M
3300009155Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaGEnvironmentalOpen in IMG/M
3300010160Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130628_MF_MetaGEnvironmentalOpen in IMG/M
3300010354Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNAEnvironmentalOpen in IMG/M
3300010885northern Canada Lakes Co-assemblyEnvironmentalOpen in IMG/M
3300011011Freshwater microbial communities from Western Basin Lake Erie, Ontario, Canada - Station 970 - Top - Depth 1mEnvironmentalOpen in IMG/M
3300011995Freshwater microbial communities from Central Basin Lake Erie, Ontario, Canada - Station 880 - Top - Depth 1mEnvironmentalOpen in IMG/M
3300012012Freshwater microbial communities from Eastern Basin Lake Erie, Ontario, Canada - Station 879 - Top - Depth 1mEnvironmentalOpen in IMG/M
3300015050Freshwater viral communities from Lake Michigan, USA - Sp13.VD.MM110.S.DEnvironmentalOpen in IMG/M
3300017701Freshwater viral communities from Lake Michigan, USA - Fa13.ND.MM110.S.NEnvironmentalOpen in IMG/M
3300017716Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.DCM.DEnvironmentalOpen in IMG/M
3300017722Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.S.NEnvironmentalOpen in IMG/M
3300017723Freshwater viral communities from Lake Michigan, USA - Su13.ND.MM110.S.NEnvironmentalOpen in IMG/M
3300017736Freshwater viral communities from Lake Michigan, USA - Fa13.ND.MM110.D.NEnvironmentalOpen in IMG/M
3300017761Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.S.NEnvironmentalOpen in IMG/M
3300017766Freshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.S.DEnvironmentalOpen in IMG/M
3300017774Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.S.DEnvironmentalOpen in IMG/M
3300017780Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.D.NEnvironmentalOpen in IMG/M
3300017784Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.D.NEnvironmentalOpen in IMG/M
3300017785Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.D.NEnvironmentalOpen in IMG/M
3300019783Freshwater viral communities from Lake Michigan, USA - Sp13.ND.MM110.S.NEnvironmentalOpen in IMG/M
3300019784Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.DEnvironmentalOpen in IMG/M
3300020141Freshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1EnvironmentalOpen in IMG/M
3300020159Freshwater lake microbial communities from Lake Erken, Sweden - P4710_108 megahit1EnvironmentalOpen in IMG/M
3300020160Freshwater lake microbial communities from Lake Erken, Sweden - P4710_105 megahit1EnvironmentalOpen in IMG/M
3300020172Freshwater lake microbial communities from Lake Erken, Sweden - P4710_102 megahit1EnvironmentalOpen in IMG/M
3300022190Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.NEnvironmentalOpen in IMG/M
3300022407Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.S.DEnvironmentalOpen in IMG/M
3300022752Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BBEnvironmentalOpen in IMG/M
3300027132Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Miss_RepC_8hEnvironmentalOpen in IMG/M
3300027586Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG HU45MSRF (SPAdes)EnvironmentalOpen in IMG/M
3300027593Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Atlam_RepB_8hEnvironmentalOpen in IMG/M
3300027608Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)EnvironmentalOpen in IMG/M
3300027659Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF (SPAdes)EnvironmentalOpen in IMG/M
3300027736Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027744Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.SN (SPAdes)EnvironmentalOpen in IMG/M
3300027760Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_EF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027836Freshwater and sediment microbial communities from Lake Ontario - Sta 18 epilimnion Metagenome (SPAdes)EnvironmentalOpen in IMG/M
3300027892Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SN (SPAdes)EnvironmentalOpen in IMG/M
3300027963Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027971Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027973Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300028044 (restricted)Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_15mEnvironmentalOpen in IMG/M
3300028394Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130628_MF_MetaG (v2)EnvironmentalOpen in IMG/M
3300028559 (restricted)Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_1mEnvironmentalOpen in IMG/M
3300028569 (restricted)Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2017_8mEnvironmentalOpen in IMG/M
3300031857Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125EnvironmentalOpen in IMG/M
3300031873Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G15_0EnvironmentalOpen in IMG/M
3300031952Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_40EnvironmentalOpen in IMG/M
3300032053Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_16EnvironmentalOpen in IMG/M
3300032401Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G03_0EnvironmentalOpen in IMG/M
3300032516Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_0EnvironmentalOpen in IMG/M
3300034062Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Jul2012-rr0045EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
B570J29032_10955510633300002408FreshwaterMTEQDKIIDWICKDYITNIKEKDWPEKSWHYVIEKAFGLHSMTLPELKKFKTELTKEY*
JGI25908J49247_1002390073300003277Freshwater LakeMTKQDKIIDWICNNYITNIKEKEWPNDSWHYVIEKAFDLHNMTLPELKEFKTELTKED*
JGI25910J50241_1009782523300003388Freshwater LakeMKEDKRQKIIDWICDDYITNIKEKEWSQESWYYVIEKAFDLYNKTLPELKEFKTELAKED
JGI25907J50239_100778313300003394Freshwater LakeMTKQDKIIDWICNNYITNIKEKEWPNDSWHYVIEKAFDLHNMTLPELKEFKTELTNKTELTKED*
JGI25912J50252_1013851923300003412Freshwater LakeKGDSVMTKQDKIIDWICKDYITNIKEKEWPEKSWHYVIEKAFGLHSMTLPELKKFKTELTKE*
Ga0007787_1005725083300004240Freshwater LakeMDKKDKIINWICKDYITNIKEKEWPEESWYYVIEKAFDLYNMTLPELKEFKIELSKKGK*
Ga0049083_1017387023300005580Freshwater LenticMKEKIIDWICKDYITNIKEKEWPEKSWHYVIEKAFGLHSMTLPELKKFKTELTKE*
Ga0049081_1010250133300005581Freshwater LenticMTKQDKIIDWICKDYITNIKEKDWPEKSWHYVIEKAFGLHSMTLPELKKFKTELTKED*
Ga0049081_1010701433300005581Freshwater LenticMKDKIIDWICNDYITNIKEKDWPNDSWHYVIEKAFNLHSMTLPELKKFKTELTKE*
Ga0049081_1029354033300005581Freshwater LenticIDWICKDYITNIKEKDWPEKSWHYVIEKAFGLHSMTLPELKKFKTELTKEY*
Ga0049080_1003663363300005582Freshwater LenticMTNKDKTIDWICKDYITNIKEKDWPEKSWHYVIEKAFGLHSMTLPELKKFKTELTKEY*
Ga0049080_1006763513300005582Freshwater LenticICKDYITNIKEKDWPEKSWHYVIEKAFGLHSMTLPELKKFKTELTKEY*
Ga0049082_1019934713300005584Freshwater LenticIDWICKDYITNIKEKEWPEKSWHYVIEKAFGLHSMTLPELKKFKTELTKE*
Ga0049082_1023998933300005584Freshwater LenticMKEDKRQKIIDWICDDYITNIKEKEWSQESWYYVIEKAFDLYNKTLPELKEFKTELTKE
Ga0079957_102098383300005805LakeMKDNEKQKIIDWICDDYITNIKEKDWPKDSWYYVIEKAFDLYNMSPKELKEFREELKYER
Ga0104986_1598163300007734FreshwaterMEKKDKIINWICNDYITNIKEKDWPKESWYYVIEKAFDLYNMTLPELKKFKIELTKK*
Ga0114363_109916213300008266Freshwater, PlanktonMTKQDKIIDWICNNYITNIKEKEWPNDSWYYVIEKAFDLHNMTLPELKEFKTELTKED*
Ga0114364_113203113300008267Freshwater, PlanktonDKIIDWICNNYITNIKEKERPNDSWYYVIEKAFDLHNMTLPELKEFKTELTKED*
Ga0114876_102432463300008448Freshwater LakeMTKQDKIIDWICNNYITNIKEKEWPNNSWYYVIEKAFDLHNMTLPELKEFKTELTEED*
Ga0114876_119254913300008448Freshwater LakeMTKQDKIIDWICNNYITNIKEKEWPNNSWHYVIEKAFDLHKMTLPELKKFKTELTKEY*
Ga0114880_121592723300008450Freshwater LakeMTKQDKIIDWICKDYITNIKEKEWPEKSWHYVIEKAFGLHSMTLPELKKFKTELTKE*
Ga0114973_1004410033300009068Freshwater LakeMTNKDKTIDWICKDYITNIKEKDWPEKSWHYVIEKAFGLHSMTLPELKKFKTELTKED*
Ga0114973_1011981953300009068Freshwater LakeMTKQDKIIDWICKDYITNIKENDWPEKSWHYVIEKAFGLHSMTLPELKKFKTELTKED*
Ga0114973_1012224953300009068Freshwater LakeMTKQDKIIDWICNNYITNIKEKEWPKDSWYYVIEKAFNLHNMTLPELKEFKNELTKED*
Ga0114973_1043601523300009068Freshwater LakeMTKHDKIIDWICNNYITNIKEKEWPNNSWHYVIEKAFDLHNMTLPELKEFKTELTKED*
Ga0114973_1045890523300009068Freshwater LakeMTKQDKIIDWICNNYITNIKEKEWPNNSWHYVIEKAFDLHNMTLPELKEFKAELKEED*
Ga0114968_1017870343300009155Freshwater LakeMTKQDKIIDWICNNYITNIKEKEWPNNSWHYVIEKAFDLHNMTLPELKEFKAELREED*
Ga0114968_1022214023300009155Freshwater LakeMTKQDKIIDWICKDYITNIKEKEWPEKSWHYVIEKAFGLHSMTLPELKKFKTELTKED*
Ga0114968_1039574543300009155Freshwater LakeKQDKIIDWICNNYITNIKEKEWPNNSWYYVIEKAFDLHNMTLPELKEFKTELTKED*
Ga0114968_1069293233300009155Freshwater LakeMTKQDKIIDWICNNYITNIKEKEWPKDSWYYVIEKAFNLHNMTLPELKEFK
Ga0114967_1028625233300010160Freshwater LakeMTKQDKIIDWICNNYITNIKEKEWPNNSWYYVIEKAFDLHNMTLPELKEFKTELTKED*
Ga0129333_1017496073300010354Freshwater To Marine Saline GradientMTNKDKIIDWICKDYITNIKEKNWPEESWHYVIEKAFGLHNMTLPKLKKFKTELR
Ga0133913_1298146233300010885Freshwater LakeMREDKRQKIIDWICDDYITNIKEKEWSQESWYYVIEKAFDLYNKTLPELKEFKTELTKED
Ga0139556_103376913300011011FreshwaterMKEDKRQKIIDWICDDYITNIKEKEWSQESWYYEFEKAFDLYNKTLPELKEFKIELTKED
Ga0153800_101050833300011995FreshwaterMTNKDKTIDWICKDYITNIKEKDWPEKSWHYVIEKAFGLHSMTLPELKKFKTELTKE*
Ga0153799_106002023300012012FreshwaterMTKQDKIIDWICNNYITNIKEKEWPNNSWYYVIEKAFDLHNMTLPELKEFKTELTKEY*
Ga0181338_106612823300015050Freshwater LakeMKEKIIDWICKDYITNIKEKEWPEKSWHYVIEKAFGLHSMTLPELKKFKTELTKEY*
Ga0181364_104358433300017701Freshwater LakeMTKQDKIIDWICKDYITNIKEKDWPEKSWHYVIEKAFDLHNMTLPELKKFKTELTEEV
Ga0181350_104020113300017716Freshwater LakeMSDDKRQKIIDWICDDYITNIKEKEWSQENWYYVIEKAFDLHNMTLPELKEFKTELAKED
Ga0181350_106708143300017716Freshwater LakeMTKQDKIIDWICNNYITNIKEKKWPNDSWHYVIAKAFDLHNMTLPELKEFKIELTKED
Ga0181350_114287333300017716Freshwater LakeMTKQDKIIDWICNNYITNIKEKEWPNDSWYYVIEKAFDLHNMTLPELKEF
Ga0181350_114942233300017716Freshwater LakeMTKQDKIIDWICKDYITNIKEKEWPEKSWHYVIEKAFGLHSMTLPELKKFKTELTK
Ga0181347_119614123300017722Freshwater LakeMKEKIIDWICKDYITNIKEKEWPNKSWYYVIEKAFDLQNMTLSELKKFKTELTKEA
Ga0181362_103974743300017723Freshwater LakeMKEKIIDWICKDYITNIKEKEWPEKSWHYVIEKAFGLHSMTLPELKKFKTELTKEA
Ga0181362_105906923300017723Freshwater LakeMTNKDKTIDWICKDYITNIKEKDWPEKSWYYVIEKAFGLHNMTLPELKKFKTEITKEY
Ga0181362_107481133300017723Freshwater LakeMSDDKRQKIIDWICDDYITNIKEKEWSQENWYYVIEKAFDLYNKTLPELKEFKTELTKED
Ga0181365_114884833300017736Freshwater LakeCKDYITNIKEKDWPEKSWHYVIEKAFGLHSMTLPELKKFKTELTKEY
Ga0181365_116313513300017736Freshwater LakeKQDKIIDWICNNYITNIKEKEWPNNSWHYVIEKAFDLHNMTLSELKEFKTELTKED
Ga0181356_108411043300017761Freshwater LakeMKEDKRQKIIDWICDDYITNIKEKEWSQESWYYVIEKAFDLYNKTLPELKEFREELKNE
Ga0181356_115204143300017761Freshwater LakeKQDKIIDWICKDYITNIKEKEWPEKSWHYVIEKAFGLHSMTLPELKKFKTELTEEV
Ga0181356_120667423300017761Freshwater LakeMKGKMTKQDKIINWICNNYITNIKEKEWPNNSWHYVIEKAFDLHNMTLPELKEFKTELTKKE
Ga0181343_116050923300017766Freshwater LakeMDKKDKIINWICKDYITNIKEKEWPEESWYYVIEKAFDLYNMTLPELKEFKTELTKED
Ga0181358_125409613300017774Freshwater LakeQDKIIDWICKDYITNIKEKDWPEKSWHYVIEKAFGLHSMTLPELKKFKTELTKEY
Ga0181358_126364013300017774Freshwater LakeQDKIIDWICKDYITNIKEKDWPEKSWHYVIEKAFGLHSMTLPELKKFKTELTKED
Ga0181358_127670613300017774Freshwater LakeNKQGEKMKEKIIDWICKDYITNIKEKEWPEKSWHYVIEKAFSLHSMTLSELKKFKIELTK
Ga0181346_109693843300017780Freshwater LakeMKEDKRQKIIDWICDDYITNIKEKEWSQESWYYVIEKAFDLYNKTLPELKEFKIEL
Ga0181346_123121033300017780Freshwater LakeMTKQDKIIDWICKDYITNIKEKEWPEKSWHYVIEKAFGLHSMTLPELKKFKTELT
Ga0181346_128260923300017780Freshwater LakeMDKKDKIINWICKDYITNIKEKEWPEESWYYVIEKAFDLYNKTLPELKEFKIELSKKGK
Ga0181348_119345513300017784Freshwater LakeMTKQDKIIDWICNNYITNIKEKEWPNNSWHYVIEKAFDLHNMTLPELKEF
Ga0181348_125717613300017784Freshwater LakeMKEDKRQKIIDWICDDYITNIKEKEWSQESWYYVIEKAFDLYNKTLPELKEFREELKNEX
Ga0181348_131604613300017784Freshwater LakeDWICKDYITNIKEKDWPEKSWHYVIEKAFGLHSMTLPELKKFKTELTKEY
Ga0181355_122613623300017785Freshwater LakeMTKQDKIIDWICKDYITNIKEKEWPEKSWHYVIEKAFGLHSMTLLELKKFKTELTKEY
Ga0181361_12169913300019783Freshwater LakeMTKQDKIIDWICNNYITNIKEKEWPNDSWHYVIEKAFDLHNMTLPELKEFKTELTKED
Ga0181359_105419833300019784Freshwater LakeMSDDKRQKIIDWICDDYITNIKEKEWSQESWYYVIEKAFDLYNKTLPELKEFKTELAKED
Ga0181359_105860223300019784Freshwater LakeMKEKIIDWICKDYITNIKEKEWPEKSWHYVIEKAFGLHSMTLPELKKFKTELTKE
Ga0181359_109712633300019784Freshwater LakeMTKQDKIINWICNNYITNIKEKEWPNNSWHYVIEKAFDLHNMTLPELKEFKTELTEED
Ga0181359_113096633300019784Freshwater LakeMTKQDKIIDWICNNYITNIKEKEWPNNSWHYVIEKAFDLHNMTLTELKEFKTELTEED
Ga0181359_113101633300019784Freshwater LakeMTKQDKIIDWICNNYITNIKEKEWPNNSWHYVIEKAFDLHNMTLPELKKFKTELTKED
Ga0181359_114588613300019784Freshwater LakeIIDWICNNYITNIKEKEWPNNSWHYVIEKAFDLHNMTLPELKEFKTELTKED
Ga0181359_116418233300019784Freshwater LakeMTKQDKIIDWICKDYITNIKEKEWPEKSWHYVIEKAFGLHSMTLPELKKFKTELTEEV
Ga0181359_118329323300019784Freshwater LakeMKEDKRQKIIDWICDDYITNIKEKEWSQESWYYVIEKAFDLYNKTLPELKEFKTELTKED
Ga0181359_120065533300019784Freshwater LakeMTKQDKIIDWICKDYITNIKEKEWPEKSWHYVIEKAFGLHSMTLPELKKFKTELTKED
Ga0181359_123526833300019784Freshwater LakeMKEKIIDWICKDYITNIKEKDWPEKSWHYVIKKAFGLHSMTLSELKKFKIELTKE
Ga0181359_127014433300019784Freshwater LakeIIDWICDDYITNIKEKEWSQESWYYVIEKAFDLYNKTLPELKEFREELKNE
Ga0181359_127259223300019784Freshwater LakeMKEDKRQKIIDWICDDYITNIKEKEWSQESWYYVIEKAFDLYNKTLPELKEFKIELTKED
Ga0211732_148750543300020141FreshwaterMTNKDRIIDWICKDYITNIKEKEWPNDSWYYVIKKAFDLHNMTLPELKKFKTELTKED
Ga0211734_1032981633300020159FreshwaterVTKQDKIIDWICNDYITNIKEKEWPNNSWYYIIKKAFDLHNMTLPELKKFKTELTKED
Ga0211734_1110212223300020159FreshwaterMKEKIIDWICKDYITNIKEKDWPEESWHYVIKKAFDLHSMTLSELKKFKTELTKE
Ga0211734_1127714223300020159FreshwaterMKEDKKQKIIDWICDDYITNIKEKEWSQESWYYVIEKAFDLYNKTLPELKEFKTELAKED
Ga0211733_1080671033300020160FreshwaterMKEDKKQKIIDWICDDYITNIKEKEWPNDSWYYVIKKAFDLHNMTLPELKKFKTELTRED
Ga0211729_1098274323300020172FreshwaterMDKKDKIINWICKDYITNIKEKEWPEESWYYIIKKAFDLYNMTLPELKKFKIELSNKGK
Ga0181354_103530473300022190Freshwater LakeKRKKMTKQDKIIDWICNNYITNIKEKEWPNNSWHYVIEKAFDLHNMTLPELKEFKTELTKED
Ga0181354_106028143300022190Freshwater LakeMTKQDKIIDWICNNYITNIKEKEWPNDSWYYVIEKAFDLHNMTLPELKEFKTELTKED
Ga0181354_107023013300022190Freshwater LakeEMSDDKRQKIIDWICDDYITNIKEKEWSQENWYYVIEKAFDLYNKTLPELKEFKTELAKE
Ga0181354_108423223300022190Freshwater LakeMKEDKRQKIIDWICDDYITNIKEKEWSQESWYYVIEKAFDLYNKTLPELKEFKIELAKED
Ga0181354_113869033300022190Freshwater LakeMKEDKRQKIIDWICDDYITNIKEKEWPEKSWHYVIEKSFGLHSMTLPELKKFREELKNE
Ga0181354_115136323300022190Freshwater LakeMTKQDKIIDWICKDYITNIKEKEWPEKSWHYVIEKAFGLHSMTLPELKKFKTELTKEY
Ga0181354_121289513300022190Freshwater LakeMTKQDKIIDWICKDYITNIKEKEWPEKSWYYVIEKAFGLHSMTLPELKKFKTELTKEV
Ga0181354_122866813300022190Freshwater LakeMTKQDTIIDWICNNYITNIKEKEWPNNSWHYVIEKAFGLHSMTLPELKKFK
Ga0181351_110985213300022407Freshwater LakeKMTKQDKIIDWICNNYITNIKEKEWPNDSWHYVIEKAFDLHNMTLPELKEFKTELTKED
Ga0181351_117147633300022407Freshwater LakeMTKQDKIIDWICNNYITNIKEKEWPNNSWYYVIEKAFDLHNMTLPELKEFKTELTEED
Ga0214917_10021105143300022752FreshwaterMTKQDKIIDWICKDYITNIKEKDWPEKSWHYVIEKAFGLHSMTLPELKKFKTELTKE
Ga0214917_10026275123300022752FreshwaterMKEDKRQKIINWICDDYITNIKEKEWSQESWYYVIEKAFDLYNKTLPELKEFKTELTKED
Ga0255110_102706943300027132FreshwaterMTNKDKTIDWICKDYITNIKEKDWPEKSWHYVIEKAFGLHSMTLPELKKFKTKLTKEY
Ga0208966_106721213300027586Freshwater LenticMKEDKRQKIIDWICDDYITNIKEKEWSQESWYYVIEKAFDLYNKTLPELKEFKTELTK
Ga0255118_108392533300027593FreshwaterMTNKDKTIDWICKDYITNIKEKDWPEKSWHYVIEKAFGLHSMTLPELKKFKTELTKE
Ga0208974_106153823300027608Freshwater LenticMDKKDKIINWICKDYITNIKEKEWPEESWYYVIEKAFDLYNMTLPELKEFKIELSKKGK
Ga0208974_107961933300027608Freshwater LenticMTNKDKTIDWICKDYITNIKEKDWPEKSWHYVIEKAFGLHSMTLPELKKFKTELTKEY
Ga0208974_115913313300027608Freshwater LenticIDWICKDYITNIKEKDWPEKSWHYVIEKAFGLHSMTLPELKKFKTELTKEY
Ga0208975_106038513300027659Freshwater LenticLGILKMTNKDKTIDWICKDYITNIKEKDWPEKSWHYVIEKAFGLHSMTLPELKKFKTELTKEY
Ga0209190_130019523300027736Freshwater LakeMTKQDKIIDWICNNYITNIKEKEWPNNSWHYVIEKAFDLHNMTLPELKEFKAELREED
Ga0209355_136938813300027744Freshwater LakeMSDDKRQKIIDWICDDYITNIKEKEWSQENWYYVIEKAFDLYNKTLPELKEFKTEL
Ga0209598_1010421233300027760Freshwater LakeMTNKDKTIDWICKDYITNIKEKDWPEKSWHYVIEKAFGLHSMTLPELKKFKTELTKED
Ga0209598_1012215233300027760Freshwater LakeMTKQDKIIDWICNNYITNIKEKEWPKDSWYYVIEKAFNLHNMTLPELKEFKNELTKED
Ga0209230_1061480823300027836Freshwater And SedimentMKEDKRQKIIDWICDDYITNIKEKEWSQESWYYVIEKAFDLYNKTLPELKEF
Ga0209550_1049100913300027892Freshwater LakeMTNKDKTIDWICKDYITNIKEKDWPEKSWHYVIEKAFGLHSMTLPELKKFKTELTKEH
Ga0209400_131876733300027963Freshwater LakeCKDYITNIKEKEWPEKSWHYVIEKAFGLHSMTLPELKKFKTELTKED
Ga0209401_103074063300027971Freshwater LakeMTKQDKIIDWICKDYITNIKENDWPEKSWHYVIEKAFGLHSMTLPELKKFKTELTKED
Ga0209298_1006155963300027973Freshwater LakeMTKQDKIIDWICKDYITNIKEKDWPEKSWYYVIEKAFGLHSMTLPELKKFKTELTKED
(restricted) Ga0247838_110433863300028044FreshwaterRDKTIDWICKDYITNIKEKDWPEKSWYYVIEKAFGLHSMTLPELKKFKIELTKED
Ga0304730_117238713300028394Freshwater LakeMKEKMTKQDKIIDWICNNYITNIKEKEWPNNSWHYVIEKAFDLHNMTLPELKEFKDELKEED
(restricted) Ga0247831_104431293300028559FreshwaterMTNKDKTIDWICKDYITNIKEKDWPEKSWYYVIEKAFGLHSMTLPELKKFKIELTKED
(restricted) Ga0247843_113674643300028569FreshwaterMKDKIIDWICNDYITNIKEKDWPNDSWHYVIEKAFNLHSMTLPELKKFKTELTKE
Ga0315909_1054548933300031857FreshwaterMTKQDKIIDWICNNYITNIKEKEWPNNSWHYVIEKAFDLHNMTLPELKKFKTELTKEY
Ga0315297_1060728713300031873SedimentMKEKIIDWICKDYITNIKEKDWPEKSWHYVIKKAFDLHSMTLSELKKFKTEL
Ga0315294_1035657933300031952SedimentMKEKIIDWICKDYITNIKEKDWPEKSWHYVIKKAFDLHSMTLSELKKFKTELTKE
Ga0315284_1144555243300032053SedimentMKEKIIDWICKDYITNIKEKEWPEKSWHYVIEKAFGLHSMTLPELKKFKTELTK
Ga0315275_1158155013300032401SedimentICDDYITNIKEKEWSQESWYYVIEKAFDLYNKTLPELKEFKTELTKED
Ga0315273_1035486833300032516SedimentMSDDKRQKIIDWICDDYITNIKEKEWSQESWYYVIEKAFDLYNKTLPELKEFKIELTKED
Ga0334995_0190752_315_4913300034062FreshwaterMTEQDKIIDWICKDYITNIKEKDWPEKSWHYVIEKAFGLHSMTLPELKKFKTELTKEY


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