Metagenome / Metatranscriptome Family F073066

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Overview

Basic Information
Family ID	F073066
Family Type	Metagenome / Metatranscriptome
Number of Sequences	120
Average Sequence Length	70 residues
Representative Sequence	MEEDLRKIHLENLLNTLEDSDKDKKIEICNIMKEMVKEEIEKAKRNQNNDMTHFLNKLKELLEKTINRYSE
Number of Associated Samples	74
Number of Associated Scaffolds	120

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	19.17 %
% of genes near scaffold ends (potentially truncated)	25.00 %
% of genes from short scaffolds (< 2000 bps)	91.67 %
Associated GOLD sequencing projects	66
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Unclassified (98.333 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater (40.000 % of family members)
Environment Ontology (ENVO)	Unclassified (65.000 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (88.333 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76. 1TBL_comb48_EPIDRAFT_10561982 2B570J29611_10023853 3Ga0007817_10091181 4Ga0007829_101016351 5Ga0065177_10879911 6Ga0007827_100105611 7Ga0007827_100469494 8Ga0007827_100894022 9Ga0007827_100947132 10Ga0007827_101232012 11Ga0007809_102416902 12Ga0071351_10581781 13Ga0071350_10360161 14Ga0071350_10373233 15Ga0071350_10514853 16Ga0071350_11161974 17Ga0071350_11365352 18Ga0071350_12526091 19Ga0071350_12618321 20Ga0071350_12849751 21Ga0071350_13270603 22Ga0071350_13707971 23Ga0068877_105431651 24Ga0007876_10680861 25Ga0007806_10321342 26Ga0007813_10577641 27Ga0007813_10717442 28Ga0007871_10585762 29Ga0007857_10594301 30Ga0007807_10721861 31Ga0007807_11060782 32Ga0007818_10445614 33Ga0007867_10598152 34Ga0007824_10364952 35Ga0007837_10114665 36Ga0007837_10829382 37Ga0114338_10824205 38Ga0114338_12261723 39Ga0114339_10622464 40Ga0114342_10386614 41Ga0114342_10478102 42Ga0114342_11374073 43Ga0114345_10177636 44Ga0114345_10286922 45Ga0114345_10451501 46Ga0114345_10705543 47Ga0114345_10733814 48Ga0114345_10866593 49Ga0114345_11503501 50Ga0114345_12143981 51Ga0114345_12439623 52Ga0114345_12510343 53Ga0114345_12650183 54Ga0114352_10427593 55Ga0114352_10845783 56Ga0114352_11164442 57Ga0114352_11281091 58Ga0114359_11129632 59Ga0114359_12603672 60Ga0114336_12419403 61Ga0157565_11375001 62Ga0157578_10692092 63Ga0157562_11318354 64Ga0157574_10274591 65Ga0164292_106967192 66Ga0164296_10628205 67Ga0164296_12400992 68Ga0164296_13119633 69Ga0164296_13516943 70Ga0164297_102345273 71Ga0164297_102397591 72Ga0164297_102743322 73Ga0164297_103648883 74Ga0208464_1132252 75Ga0208697_10042595 76Ga0208361_10035085 77Ga0208855_10058205 78Ga0214169_1011581 79Ga0214197_10089682 80Ga0214207_10185251 81Ga0214178_10018985 82Ga0214202_10125452 83Ga0214170_10133605 84Ga0214201_10243021 85Ga0214187_10244083 86Ga0214171_10068344 87Ga0214171_10219261 88Ga0214164_10299475 89Ga0214166_10274694 90Ga0247724_10010727 91Ga0247724_10068755 92Ga0247724_10084975 93Ga0247724_10320082 94Ga0247724_10415982 95Ga0247724_10735061 96Ga0208866_10006072 97Ga0208254_10021592 98Ga0207955_10204592 99Ga0208876_10194253 100Ga0208378_10347882 101Ga0208614_10435512 102Ga0208739_10383931 103Ga0208618_10216551 104Ga0208105_10464991 105Ga0208105_10645612 106Ga0208496_10145775 107Ga0208379_11354811 108Ga0208741_101582831 109Ga0208104_10238863 110Ga0208258_10395322 111Ga0209617_103761282 112Ga0209990_100825723 113Ga0316219_11655824 114Ga0334980_0009855_1359_1574 115Ga0335020_0083702_1051_1266 116Ga0335010_0214168_983_1162 117Ga0335068_0338381_79_294 118Ga0335054_0435935_531_743 119Ga0335049_0293151_1_180 120Ga0335013_0293603_142_357
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76. 1TBL_comb48_EPIDRAFT_10561982 2Ga0114345_10177636 3Ga0114345_12510343 4Ga0208464_1132252
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76. 1TBL_comb48_EPIDRAFT_10561982 2Ga0114345_10177636 3Ga0114345_12510343 4Ga0208464_1132252
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 87.32% β-sheet: 0.00% Coil/Unstructured: 12.68%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	1.67 %
Unclassified	root	N/A	98.33 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.33 %
Viruses	superkingdom	All Organisms → Viruses	1.67 %

Name	Rank	Taxonomy	Distribution
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.67 %
Unclassified	root	N/A	98.33 %

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000439\|TBL_comb48_EPIDRAFT_1056198	Not Available	1348	Open in IMG/M
3300002401\|B570J29611_1002385	Not Available	1859	Open in IMG/M
3300003804\|Ga0007817_1009118	Not Available	682	Open in IMG/M
3300004095\|Ga0007829_10101635	Not Available	584	Open in IMG/M
3300004685\|Ga0065177_1087991	Not Available	576	Open in IMG/M
3300004777\|Ga0007827_10010561	Not Available	2349	Open in IMG/M
3300004777\|Ga0007827_10046949	Not Available	1008	Open in IMG/M
3300004777\|Ga0007827_10089402	Not Available	696	Open in IMG/M
3300004777\|Ga0007827_10094713	Not Available	673	Open in IMG/M
3300004777\|Ga0007827_10123201	Not Available	580	Open in IMG/M

Showing 1 to 10 of 120 entries

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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	95.00%
Terrestrial	Environmental → Terrestrial	5.00%

Habitat	Taxonomy	Distribution
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	5.00%
Freshwater	Environmental → Aquatic → Freshwater	95.00%

Habitat	Taxonomy	Distribution
Lake	Environmental → Aquatic → Freshwater → Lake	36.67%
Lentic	Environmental → Aquatic → Freshwater → Lentic	58.33%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified	5.00%

Habitat	Taxonomy	Distribution
Epilimnion	Environmental → Aquatic → Freshwater → Lentic → Epilimnion	15.00%
Hypolimnion	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion	0.83%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	42.50%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	36.67%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified	5.00%

Habitat	Taxonomy	Distribution
Deep Subsurface Sediment	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment	5.00%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater	40.00%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	16.67%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater	14.17%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater	0.83%
Freshwater And Sediment	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater And Sediment	0.83%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	1.67%
Freshwater, Plankton	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton	20.00%
Freshwater, Plankton	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater, Plankton	0.83%

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000439	Trout Bog Lake June 7 2007 Epilimnion (Trout Bog Lake Combined Assembly 48 Epilimnion Samples, Aug 2012 Assem)	Environmental	Open in IMG/M
3300002401	Freshwater microbial communities from Lake Mendota, WI - 26JUN2009 deep hole epilimnion	Environmental	Open in IMG/M
3300003804	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE29May09	Environmental	Open in IMG/M
3300004095	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE03Jun09	Environmental	Open in IMG/M
3300004685	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE18Jul08 (version 2)	Environmental	Open in IMG/M
3300004777	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE16Jul07	Environmental	Open in IMG/M
3300004807	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE02Aug07	Environmental	Open in IMG/M
3300005044	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0048	Environmental	Open in IMG/M
3300005069	Metagenomes from Harmful Algal Blooms in Lake Erie, HABS-E2014-0024	Environmental	Open in IMG/M
3300005525	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel6S_1000h metaG	Environmental	Open in IMG/M

Showing 1 to 10 of 74 entries

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
TBL_comb48_EPIDRAFT_10561982	3300000439	Freshwater	MEEDLRKIHLESLLNNLEDSDKDRKIEICNIMKEMVKEEIEKAKRNQNNDMTYFLNKLKELLEKTISRYSE*
B570J29611_10023853	3300002401	Freshwater	MEEDLRKIHLENLLNTXEDADKDKKVEICNIMKEMVKEEIXQAERNQNNDMTHFLNKLKELLEKTINRYSE*
Ga0007817_10091181	3300003804	Freshwater	MEEDLRKIHLESLLNNLEDSDKDRKIEICNIMKEMVKEEIEKAKRNQNNDMTYFLNKLKELLEKTISRYS
Ga0007829_101016351	3300004095	Freshwater	MEEALRKIHLENLLKTLEDSDKNKKIEICNIMKEMVKEEIEKAKRNQNNDMTHFLNKLKELLEKTINRYSE*
Ga0065177_10879911	3300004685	Freshwater	MEEDLRKIHLENLLNTLEDSDKDKKIEICNIMKEMVEEETEKAKRNQNNDMTHFLNKLKELLEKTINRYSE*
Ga0007827_100105611	3300004777	Freshwater	MEEDLRKIHLENLLNTLEDSDKDKKIEICNIMKEMVEEETVKAKRNQNNDMTHFLNKLKELLEKTINRYSE*
Ga0007827_100469494	3300004777	Freshwater	MEEDLRKIHLESLLNNLEDSDKDKKVEICNIMKEMVKEEIEQAKRNQNNDMTHFLNKLRELLEKTINRYSE*
Ga0007827_100894022	3300004777	Freshwater	MEEDLRKIHLESLLNTLEDSDKDKKIEICNIMKEMVKEEIEKAKRNQNNDMTHFLNKLKELLEKTINRYSE*
Ga0007827_100947132	3300004777	Freshwater	MEEDLRKIHLENLLNTLEDSDKDKKIEVCNIMKEMVEEEIEKAKRNQDNDMTHFLNKLKELLEKTTDRCSE*
Ga0007827_101232012	3300004777	Freshwater	MEEDLRKTHLENLLNTLEDSDKNKKIEICNIMKEMVKEETEKAKRNQDNDITHFLNKLKELLEKTIDRYSE*
Ga0007809_102416902	3300004807	Freshwater	MEEDLRKTHLENLLNTLEDSDEDKKIEICNIMKEMVKEEIEKAKRNQNNDMTHFLNKLKELLEKTINRYSE*
Ga0071351_10581781	3300005044	Freshwater, Plankton	MEEDLRKIHLESLLNNLEDSDKDKKIEICNIMKEMVKEEIEQAKRNQNDDMTHFLNKLKELLEKTINRYSK*
Ga0071350_10360161	3300005069	Freshwater	MEEDLRKIHLENLLNTLEDADKDKKVEICNIMKEMVKEEIEQAKRNQNNDMTHFLNKLKELLEKTINRYSE*
Ga0071350_10373233	3300005069	Freshwater	MEEDLRKIHLENLLNTLEDSDKDKKIEICNIMKEMVREETEKAKRNQNDDMTHFLNKLKELLEKTINRYSK*
Ga0071350_10514853	3300005069	Freshwater	MEEDLRKIHLESLLNTLEDSDKDKKVEICNIMKEMVKEEIEKAKRNQNNDMTHFLNKLKELLEKTINRYSE*
Ga0071350_11161974	3300005069	Freshwater	MEKDLRKIHLENLLNTLEDSDKDKKIEICNIMKEMVKEETEKAKRNQNNDMTHFLNKLKELLEKTINRYSE*
Ga0071350_11365352	3300005069	Freshwater	MEEDLRKIHLENLLNTLEDSDKDKKIEICNIMKEMVKEETEKAKRDQNNDMTHFLNKLKELLEKTINRYSE*
Ga0071350_12526091	3300005069	Freshwater	TMEEDLRKIHLENLLNTLEDSDKDKKIEICNIMKEMVEEETEKAKRNQNNDMTHFLNKLKELLEKTINRYSE*
Ga0071350_12618321	3300005069	Freshwater	MEEDLRKIHLENLLNTLEDSDEDKKIEICNIMKEMVKEEIEKAKRNQNDDMTHFLNKLKELLEKTI
Ga0071350_12849751	3300005069	Freshwater	MEEDLRKIHLESLLNNLEDSDKDKKVEICNIMKEMVKEEIEKAKRNQNDEMTHFLNKLNELLEKTINRYSE*
Ga0071350_13270603	3300005069	Freshwater	MEEDLRKIHLENLLKTLEDSDKDKKIEICNIMKEMVKEEIEKAKRNQNDDMTHFLNKLKELLEKT
Ga0071350_13707971	3300005069	Freshwater	EDLRKIHLEDLLKTLEDSDKDKKIEICNIMKEMVKEEIEEAKRNQDNDMTHFLDKLKELLEKTINRYSE*
Ga0068877_105431651	3300005525	Freshwater Lake	MEEDLRKIHLENLLNTLEDSDKDKKIEICNIMKEMVEEETEKAKRNQNNDITHFLNKLKELLEKTINRYSE*
Ga0007876_10680861	3300006071	Freshwater	TMEEDLRKIHLENLLNTLEESDKDKKIEICHIMKEMVEEETEKAKRNQNNDMTHFLNKLKELLEKTINRYSE*
Ga0007806_10321342	3300006100	Freshwater	MEEDLRKIHLESLLNNLEDSDKDRKIEICNIMKEMVKEEIEQAKRNQNNDMTHFLNKLKELLEKTINRYSE*
Ga0007813_10577641	3300006103	Freshwater	MEEDLRKIHLESLLNNLEDSDKDKKVEICNIMKEMVKEEIEQAKRNQNNDMTHFLNKLRELLEKTINHYSE*
Ga0007813_10717442	3300006103	Freshwater	MEEDLRKIHLENLLNTLEDSDKDKKIEICNIMKEMVKEEIEQAKRNQNNDMTHFLNKLKELLEKTINRYSE*
Ga0007871_10585762	3300006110	Freshwater	MEEDLRKIHLENLLNTLEDSDKDKKVEICNIMKEMVKEEIEQAKRNQNNDMTHFLNKLRELLEKTINRYSE*
Ga0007857_10594301	3300006112	Freshwater	MEEDLRKIHLESLLNNLEDSDKDKKVEICNIMKEMVKEEIEQAKRNQNNDMTHFLNKLRELLEKTISRYSE
Ga0007807_10721861	3300006116	Freshwater	MEEDLRKIHLENLLNTLEDSDKDKKVEICNIMKEMVKEEIEKAKRNQNDDMIHFLNKLKELLDKTINRYSE*
Ga0007807_11060782	3300006116	Freshwater	TMEEDLRKIHLENLLNTLEDSDKDKKIEICNIMKEMVKEETEKAKRNQDNDITHFLNKLKELLEKTIDRYSE*
Ga0007818_10445614	3300006117	Freshwater	MEEDLRKIHLENLLNTLEDSDKDKKIEICNIMKGMVKEETEKAKRNQDNDITHFLNKLKELLEKTIDRYSE*
Ga0007867_10598152	3300006120	Freshwater	TMEEDLRKIHLESLLNNLEDSDKDKKVEICNIMKEMVKEEIEQAKRNQNNDMTHFLNKLRELLEKTINRYSE*
Ga0007824_10364952	3300006121	Freshwater	MEEDLRKIHLEHLLDALKDSDKDKKIEICNIMKEMVKEEIEQAKRNQNNDMTHFLNKLRKLLEKTINRYSE*
Ga0007837_10114665	3300006122	Freshwater	MEEDLRKIHLENLLNTLEDSDKDKKIEICNIMKEMVKEETEKAKRNQDNDITHFLNKLKELLEKTINRYSE*
Ga0007837_10829382	3300006122	Freshwater	MEEDLRKIHLESLLNNLEDSDKDKKVEICNIMKEMVKEEIEQAKRNQNNDMTHFLNKLRELLEKTINRHSE*
Ga0114338_10824205	3300008105	Freshwater, Plankton	MEEDLRKIHLESLLNTLEDSDKDKKVEICNIMKEMVKEEIEQAKRNQNNDMTHFLNKLKELLE
Ga0114338_12261723	3300008105	Freshwater, Plankton	MEEDLRKIHLENLLNTLEDSDKDKKIEICNIMKEMVKEEIEQAKRNQNNDMTHFLNKLKELLE
Ga0114339_10622464	3300008106	Freshwater, Plankton	MEEDLRKIHLEDLLKTLEDSDKDKKIEICNIMKEMVKEETEKAKRNQNNDMTHFLNKLKELLEKTINRYSE*
Ga0114342_10386614	3300008109	Freshwater, Plankton	MEEDLRKIHLESLLNNLEDSDKEKKVEICNIMKEMVREETEKAKRNQNDDMTHFLNKLKELLEKTINRYSE*
Ga0114342_10478102	3300008109	Freshwater, Plankton	MEEDLRKIYLESLLNTLEDSDKDKKIEICNIMKEMVKEEIEEAKRNQDNDVTHFLDKLKELLEKTVNRYSE*
Ga0114342_11374073	3300008109	Freshwater, Plankton	MEEDLRKVHLENLLNTLEDSDKDKKIEICNIMKEMVEEETEKAKRNQNNDMTHFLNKLKELLEKTINRYSE*
Ga0114345_10177636	3300008112	Freshwater, Plankton	MEKDLRKIHLENLLNTLEDSDKDEEIEKARRSQNNDMTHFLNKLKELLEKTINRYSE*
Ga0114345_10286922	3300008112	Freshwater, Plankton	MEEDLKKIHLENLLSTLEDSDKDKKMEICNIMKEMAKEEMEKAKRNRDSDMTHFLNKLKELLEKTIDRYSE*
Ga0114345_10451501	3300008112	Freshwater, Plankton	MEEDLRKVHLENLLNTLEDSDKDKKIEICIEICNIMKEMVKEEIEKTKRNRNNDMTHFLNRLKELLEKTIDRCSE*
Ga0114345_10705543	3300008112	Freshwater, Plankton	MEEDLRKIHLEDLLKTLEDSDKDKKIEICNIMKEMVKEEIEQAKRNQNNDMTHFLNKLKELLEKTINRYSE*
Ga0114345_10733814	3300008112	Freshwater, Plankton	MEEDLRKIHLENLLNTLEDSDKDKKIEICNIMKEMVKEETEKAERDQNNDMTHFLNKLKELLEKTINRYSE*
Ga0114345_10866593	3300008112	Freshwater, Plankton	MEEDLRKTHLENLLNTLEDSDKDKKIEICNIMKEMVKEETEKAKRNQDNDITHFLNKLKELLEKTIDRYSE*
Ga0114345_11503501	3300008112	Freshwater, Plankton	LRKIHLESLLNTLEDSDKDKKVEICNIMKEMVKEETEKAKRNQDNDITHFLNKLKELLEKTIDRYSE*
Ga0114345_12143981	3300008112	Freshwater, Plankton	MEEDLRKIHLENLLNTLEDSDEDKKIEICNIMKEMVKEEIEKAKRNQNNDMTHFLNKLK
Ga0114345_12439623	3300008112	Freshwater, Plankton	MEEDLRKIHLESLLNTLEDSDKDKKVEICNIMKEMVKEEIEKAKRNQNNDMTHFLNKLKELLE
Ga0114345_12510343	3300008112	Freshwater, Plankton	MEEDLRKIHLENLLNTLEDSDKDKKIEICNIMKEMVEEETEKAKRNQNNDITHFLNKLKE
Ga0114345_12650183	3300008112	Freshwater, Plankton	MEEDLRKIHLESLLNTLEDSDKDKKIEICNIMKEMVKEEIEKAKRNQNNDMTHFLNKLK
Ga0114352_10427593	3300008118	Freshwater, Plankton	MEEDLRKIHLESLLNTLEDSEKDKKVEICNIMKEMVKEEIEKAKRNQNNDMTHFLNKLKELLEKTINRYSE*
Ga0114352_10845783	3300008118	Freshwater, Plankton	MEEDLRKIHLENLLNTLEDSDKDKKIEICNKMKEMVEEETEKAKRNQNNDMTHFLNKLKELLEKTINRYSE*
Ga0114352_11164442	3300008118	Freshwater, Plankton	MEEDLRKIHLENLLNTLEDSDKDKKIEICNIMKEMVREETEKAKRNQNDDMTHFLNKLNELLEKTINRYSK*
Ga0114352_11281091	3300008118	Freshwater, Plankton	MEEDLRKIHLDNLLNTLEDSDKDKKIEICNIMKEMVREETEKAKRNQDNDITHFLNKLKELLEKTIDRYSE*
Ga0114359_11129632	3300008122	Freshwater, Plankton	MEEDLRKVHLENLLNTLGDSDEDKKIEICNIMKEMVKEEIEKAKRNQNNDMTHFLNKLKELLEKTINRYSE*
Ga0114359_12603672	3300008122	Freshwater, Plankton	MEEDLRKIHLENLLNTLEDSDKDKKIEICNIMKEMVREETEKAKRNQNDDMTHFLNKLKELLEKTINRYSE*
Ga0114336_12419403	3300008261	Freshwater, Plankton	MEEDLRKIHLESLLNTLEDSDKEKKVEICNIMKEMVKEEIEKAKRNQNNDMTHFLNKLKELLEKTINRYSE*
Ga0157565_11375001	3300012689	Freshwater	TMEEDLRKIHLESLLNNLEDSDKDKKVEICNIMKEMVKEEIEQAKRNQNNDMTHFLNKLKELLEKTINRYSE*
Ga0157578_10692092	3300012697	Freshwater	MEEDLRKIHLESLLNNLEDSDKDKKVEICNIMKGMVKEEIEQAKRNQNNDMTYFLNKLKELLEKTINRYTE*
Ga0157562_11318354	3300012701	Freshwater	MEEDLRKIHLENLLNTLEDSDKDKKIEICNIMKEMVKEEIEKAKRNQNNDMTHFLNKLKELLEKTINRYSE*
Ga0157574_10274591	3300012704	Freshwater	LESLLNTLEDSDKDKKVEICNIMKEMVKEEIEKAKRNQNNDMTHFLNKLKELLEKTINRYSE*
Ga0164292_106967192	3300013005	Freshwater	MEEDLRKIHLENLLNTLEDSDKDKKIEICNIMKEMVEEKTEKAKRNQNNDMTHFLNKLKELLEKTINRYSE*
Ga0164296_10628205	3300013093	Freshwater	MEEDLRKIHLENLLNTLEESDKDKKIEICHIMKEMVEEETEKAKRNQNNDMTHFLNKLKELLEKTINRYSE*
Ga0164296_12400992	3300013093	Freshwater	MEEDLRKTHLESLLNTLEDSDKDKKIEICNIMKEMVKEEIEKAKRNQNNDMTHFLNKLKELLEKTINRYSE*
Ga0164296_13119633	3300013093	Freshwater	MEEDLRKTHLENLLNTLEDSDEDKKIEICNIMKEMVKEETEKAKRNQDNDITHFLNKLKELLEKTIDRYSE*
Ga0164296_13516943	3300013093	Freshwater	MEEDLRKIHLETLLNTLEDSDKDKKIEICNIMKEMVKEETEKAKRNQDNDITHFLNKLKELLEKTIDRYS
Ga0164297_102345273	3300013094	Freshwater	MEEDLRKTHLESPLNTLEDSDKDKKIEICNIMKKMVKEETEKAKRNQANEITHFLIKLKELLEKTIDRYSE*
Ga0164297_102397591	3300013094	Freshwater	MEEDLRKIHLESLLNTLEDSDKDKKVEICNIMKEMVKEEIEKTKRNQNNEITHFLNKLKELLEKTINRYSE*
Ga0164297_102743322	3300013094	Freshwater	MEEDLRKIHLENLLNTLEDSDKDKKVEICNIMKEMVKEEIEQAKRNQNNDMTHFLNKLKELLEKTINRYSE*
Ga0164297_103648883	3300013094	Freshwater	MEEDLRKIHLENLLNTLEDSDEDKKIEICNIMKEMVKEEAEKAKRNQDNDMTHFLNKLKELLEKTINRYSK*
Ga0208464_1132252	3300020482	Freshwater	NLLNTLEDADKDKKVEICNIMKEMVKEEIEQAKRNQNNDMTHFLNKLKELLEKTINRYSE
Ga0208697_10042595	3300020507	Freshwater	MEEDLRKIHLENLLNTLEDADKDKKVEICNIMKEMVKEEIEQAERNQNNDMTHFLNKLKELLEKTINRYSE
Ga0208361_10035085	3300020547	Freshwater	MEEDLRKIHLENLLNTLEDADKDKKVEICNIMKEMVKEETEQAKRNQNNDMTHFLNKLKELLEKTINRYSE
Ga0208855_10058205	3300020553	Freshwater	MEEDLRKIHLENLLNTIEDADKDKKVEICNIMKEMVKEEIEQAERNQNNDMTHFLNKLKELLEKTINRYSE
Ga0214169_1011581	3300020677	Freshwater	MEEDLRKIHLESLLNNLEDSDKDKKVEICNIMKEMVKEEIEQAKRNQNNDMTHFLNKLRELLEKTINRYSE
Ga0214197_10089682	3300020694	Freshwater	MEEDLRKIHLENLLNTLEDSDKDKKIEICNIMKEMVKEETEKAKRDQNNDMTHFLNKLRELLEKTINRYSE
Ga0214207_10185251	3300020716	Freshwater	TMEEDLRKIHLENLLNTLEDSDKDKKVEICNIMKEMVKEEIEKAKRNQNNDMTHFLNKLKELLEKTINRYSE
Ga0214178_10018985	3300020718	Freshwater	MEEDLRKIHLESLLNNLEDSDKDRKIEICNIMKEMVKEEIEQAKRNQNNDMTHFLNKLRELLEKTINRHSE
Ga0214202_10125452	3300020728	Freshwater	MEEDLRKVYLESLLNNLEDSDKDKKVEICNIMKEMVKEEIEQAKRNQNNDMTHFLNKLRKLLEKTINRYSE
Ga0214170_10133605	3300020731	Freshwater	STMEENLRKIHLESLLNNLEDSDKDKKVEICNIMKEMVKEEIEQAKRNQNNDMTHFLNKLRELLEKTINRYSE
Ga0214201_10243021	3300020732	Freshwater	MEEDLRKIHLENLLNTLEDSDKDKKVEICNIMKEMVKEEIEQAKRNQNNDMTHFLNKLRE
Ga0214187_10244083	3300021126	Freshwater	MEEDLRKIHLESLLNNLEDSDKDKKVEICNIMKEMVKEEIEQAKRNQNNDMTHFLNKLKELLE
Ga0214171_10068344	3300021134	Freshwater	MEEDLRKIHLESLLNNLEDSDKDRKIEICNIMKEMVKEEIEKAKRNQNNDMTYFLNKLKELLEKTINRYSE
Ga0214171_10219261	3300021134	Freshwater	MEEDLRKIHLENLLNTLEDSDKDKKIEICNIMKEMVKEEIEKAKRNQNNDMTHFLNKLKELLEKTINRYSE
Ga0214164_10299475	3300021138	Freshwater	MEEDLRKVHLESLLNNLEDSDKDRKIEICNIMKEMVKEEIEKAKRNQNNDMTYFLNKLKELLEKTINRYSE
Ga0214166_10274694	3300021139	Freshwater	MEEDLRKVHLESLLNNLEDSDKDRKIEICNIMKEMVKEEIEKAKRNQNNDMTYFLNKLKELLEKTISRYSE
Ga0247724_10010727	3300024239	Deep Subsurface Sediment	MEEDLRKIHLEDLLKTLEDSDKDKKIEICNIMKEMVKEEIQEAKRNQDNDITHFLDKLKELLEKTINRYSE
Ga0247724_10068755	3300024239	Deep Subsurface Sediment	MEEDLRKIHLENLLKTLEDSDRDKKIEICNIMEEMVKEEIEKAKRSQNNDMTHFLGKLKELLEKTINRYSE
Ga0247724_10084975	3300024239	Deep Subsurface Sediment	MEEDLRKIHLEDLLKTLEDSDKDKKIEICNIMKEMVKEEIEKAKRSQNNDMTHFLDKLKELLEKTINRYSE
Ga0247724_10320082	3300024239	Deep Subsurface Sediment	MEEDLRKIHLENLLKTLEDSDRDKKIEICNIMKEMVKEEIEKAKRSQSNDMTHFLGKLKELLEKTINRYSE
Ga0247724_10415982	3300024239	Deep Subsurface Sediment	MEEDLRKIHLEDLLKTLEDPDKDKKIEICNIMKEMVKEEIEEAKRNQDNDMTHFLDKLKELLEKTINRYSE
Ga0247724_10735061	3300024239	Deep Subsurface Sediment	MEEDLRKIHLEDLLKTLEDSDKDKKIEICNIMKEMVKEEIEKAKRSQNNDMIHFLDKLKELLEKTINRYS
Ga0208866_10006072	3300025340	Freshwater	MEEDLRKIHLESLLNNLEDSDKDKKVEICNIMKEMVKEEIEQAKRNQNNDMTHFLNKLKELLEKTINRYSE
Ga0208254_10021592	3300025355	Freshwater	MEEDLRKVHLESLLNNLEDSDKDRKIEICNIMKEMVKEEIEKAKRNQNNDMTHFLNKLKELLEKTINRYSE
Ga0207955_10204592	3300025401	Freshwater	MEEDLRKIHLESLLNNLEDSDKDKKVEICNIMKEMVKEEIEQAKRNQNNDMTHFLNKLRELLEKTINHYSE
Ga0208876_10194253	3300025402	Freshwater	MEEDLRKIHLESLLNNLEDSDKDRKIEICNIMKEMVKEETEKAKRNQDNDITHFLNKLKELLEKTINRYSE
Ga0208378_10347882	3300025407	Freshwater	MEEDLRKIHLENLLNTLEDSDKDKKVEICNIMKEMVKEEIEQAKRNQNNDMTHFLNKLRELLEKTINRYSE
Ga0208614_10435512	3300025413	Freshwater	MEEDLRKIHLESLLNNLEDSDKDRKIEICNIMKEMVKEEIEKAKRNQNNDMTYFLNKLKELLEKTISRYSE
Ga0208739_10383931	3300025426	Freshwater	MEEDLRKIHLESLLNNLEDSDKDKKVEICNIMKEMVKEEIEKAKRNQNNDMTHFLNKLKELLEKTINRYSE
Ga0208618_10216551	3300025435	Freshwater	MEEDLRKIHLENLLNTLEDSDKDKKIEICNIMKEMVKEETEKAKRNQNNDMTHFLNKLKELLEKTINRYSE
Ga0208105_10464991	3300025487	Freshwater	MEEDLRKIHLENLLNTLEDSDKDKKIEICNIMKEMVEEETVKAKRNQNNDMTHFLNKLKELLEKTINRYSE
Ga0208105_10645612	3300025487	Freshwater	MEEDLRKIHLENLLNTLEDSDKDKKIEVCNIMKEMVEEEIEKAKRNQDNDMTHFLNKLKELLEKTTDRCSE
Ga0208496_10145775	3300025591	Freshwater	MEEDLRKIHLESLLNNLEDSDKDKKVEICNIMKEMVKEEIEQAKRNQNNDMTYFLNKLKELLEKTINRYSE
Ga0208379_11354811	3300025598	Freshwater	MEEDLRKIHLESLLNNLEDSDKDRKIEICNIMKEMVKEEIEKAKRNQNNDMTHFLNKLKE
Ga0208741_101582831	3300025723	Freshwater	MEEDLRKIHLENLLNTLEDSDKDKKIEICNIMKEMVKEEIEKAKRSQNNDMTHFLDKLKELLEKTINRYSE
Ga0208104_10238863	3300025773	Freshwater	MEEDLRKTHLENLLNTLEDSDEDKKIEICNIMKEMVKEEIEKAKRNQNDDMTHFLNKLKELLEKTINRYSK
Ga0208258_10395322	3300025783	Freshwater	MEEDLRKIHLENLLNTLEDSDKDKKVEICNIMRKMVEEEAEKAKRNQDNDITHFLNKLKELLEKTIDRYSE
Ga0209617_103761282	3300027720	Freshwater And Sediment	NLLNTLEDSDKDKKIEICNIMKEMVEEETEKAKRNQNNDMTHFLNKLKELLEKTINRYSE
Ga0209990_100825723	3300027816	Freshwater Lake	MEEDLRKIHLENLLNTLEDSDKDKKIEICNIMKEMVREETEKAKRNQNDDMTHFLNKLKELLEKTINRYSK
Ga0316219_11655824	3300031759	Freshwater	MEEDLRKIHLESLLNNLEDSDKDKKVEICNIMKEMVKEEIEQAERNQNNDMTHFLNKLRELLEKTINHYSE
Ga0334980_0009855_1359_1574	3300033816	Freshwater	MEEDLRKIHLENLLNTLEDADKDKKVEICNIMKEMVKEEIEQAKRNQNNDMTHFLNKLKELLEKTINRYSE
Ga0335020_0083702_1051_1266	3300034082	Freshwater	MEEDLRKVHLEDLLKSLEDSDKDKKIEICNIMKEMVKEEIEKAKRNQNNDMTHFLNKLKELLEKTINRYSE
Ga0335010_0214168_983_1162	3300034092	Freshwater	LLNTSEDADKDKKVEICNIMKEMVKEEIEQAKRNQNNDMTHFLNKLKELLEKTINRYSE
Ga0335068_0338381_79_294	3300034116	Freshwater	MEEDLRKIHLENLLNTIEDADKDKKVEICNIMKEMVKEEIEQAKRNQNNDMTHFLNKLKELLEKTINRYSE
Ga0335054_0435935_531_743	3300034119	Freshwater	EEDLRKIHLENLLNTLEDADKDKKVEICNIMKEMVKEEIEQAKRNQNNDMTHFLNKLKELLEKTINRYSE
Ga0335049_0293151_1_180	3300034272	Freshwater	LLNTLEDADKDKKVEICNIMKEMVKEEIEQAKRNQNNDMTHFLNKLKELLEKTINRYSE
Ga0335013_0293603_142_357	3300034284	Freshwater	MEEDLRKVHLEDLLKSLEDSDKDKKIEICNIMKEMVKEEIEEAKRNQDNDMTHFLDKLKELLEKTINRYSE

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F073066

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences