NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F072907

Metagenome / Metatranscriptome Family F072907

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F072907
Family Type Metagenome / Metatranscriptome
Number of Sequences 120
Average Sequence Length 40 residues
Representative Sequence PFKDFNAIFEKYDEDKSAIVLINFLRHQQRVKIQSEMIA
Number of Associated Samples 42
Number of Associated Scaffolds 120

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 99.17 %
% of genes from short scaffolds (< 2000 bps) 82.50 %
Associated GOLD sequencing projects 28
AlphaFold2 3D model prediction Yes
3D model pTM-score0.52

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (57.500 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh
(100.000 % of family members)
Environment Ontology (ENVO) Unclassified
(100.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(100.000 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52
1Ga0182079_11029913
2Ga0182055_14726181
3Ga0182082_15933711
4Ga0182063_13062871
5Ga0181565_100791661
6Ga0181565_101426881
7Ga0181565_101792091
8Ga0181565_102319591
9Ga0181565_102613641
10Ga0181565_102689763
11Ga0181565_105686622
12Ga0181565_107070582
13Ga0181565_110265811
14Ga0181584_105134541
15Ga0181584_105842411
16Ga0181584_106967471
17Ga0181584_108430961
18Ga0181584_108880211
19Ga0181584_108943392
20Ga0181577_100653767
21Ga0181577_102913122
22Ga0181577_106767622
23Ga0181583_103189943
24Ga0181583_106555742
25Ga0181580_106597392
26Ga0181571_100097879
27Ga0181571_100134979
28Ga0181571_100211881
29Ga0181571_103539611
30Ga0181571_108028041
31Ga0181582_102355483
32Ga0181581_100196127
33Ga0181581_101765222
34Ga0181581_108676891
35Ga0181589_100412146
36Ga0181589_102187681
37Ga0181589_102307411
38Ga0181589_105312981
39Ga0181589_108006302
40Ga0181589_109010801
41Ga0181590_103349111
42Ga0181587_104012783
43Ga0181585_101932811
44Ga0181576_100298171
45Ga0181576_105335301
46Ga0181576_107641842
47Ga0181576_108261982
48Ga0181569_100117089
49Ga0181569_100143728
50Ga0181569_100513271
51Ga0181569_100639011
52Ga0181569_101401001
53Ga0181569_102865521
54Ga0181569_107315153
55Ga0181572_100682674
56Ga0181572_104446111
57Ga0181572_107304541
58Ga0181572_107849291
59Ga0181567_106395642
60Ga0181592_102004711
61Ga0181592_104567353
62Ga0181592_104695292
63Ga0181592_105179322
64Ga0181592_105812271
65Ga0181591_102989561
66Ga0181591_105565601
67Ga0181591_109919631
68Ga0181566_100398171
69Ga0181566_102161643
70Ga0181566_104144841
71Ga0181566_104270921
72Ga0181566_108807592
73Ga0181566_110681611
74Ga0181568_106036711
75Ga0181568_109727391
76Ga0181568_113979871
77Ga0182061_13484121
78Ga0182081_16550721
79Ga0181588_101217211
80Ga0181570_100191015
81Ga0181570_102583371
82Ga0181570_102706381
83Ga0181570_103278302
84Ga0181570_103958512
85Ga0181570_105196772
86Ga0255780_103975231
87Ga0255754_101206284
88Ga0255754_103240773
89Ga0255754_104579092
90Ga0255764_101032952
91Ga0255764_101900622
92Ga0255764_103712101
93Ga0255764_104979921
94Ga0255778_101232381
95Ga0255778_103973242
96Ga0255778_104312692
97Ga0255774_100035151
98Ga0255774_100168307
99Ga0255774_101183703
100Ga0255774_101435061
101Ga0255774_103808721
102Ga0255774_104237531
103Ga0255782_101765561
104Ga0255743_102785613
105Ga0255760_100926581
106Ga0255760_101134413
107Ga0255760_101755951
108Ga0255760_103063321
109Ga0255751_102493081
110Ga0255751_104347082
111Ga0255757_102921101
112Ga0255762_101014211
113Ga0255762_103303763
114Ga0255762_105004672
115Ga0255777_100632251
116Ga0255777_102626391
117Ga0255777_105238423
118Ga0255772_100397305
119Ga0255772_100778773
120Ga0255768_105755551
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 50.75%    β-sheet: 0.00%    Coil/Unstructured: 49.25%
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Variant

5101520253035PFKDFNAIFEKYDEDKSAIVLINFLRHQQRVKIQSEMIASequenceα-helicesβ-strandsCoilSS Conf. score
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.52
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
57.5%42.5%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Visualization
Salt Marsh
100.0%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
Ga0182079_110299133300016741Salt MarshGPFKDFNAIFEKYDEDKSAIVLINFLRYQQRVKIQSEMIA
Ga0182055_147261813300016746Salt MarshPFKGFNAIFEKYDKDKSAIVLINFLRHQQRVKIQSEMIA
Ga0182082_159337113300016771Salt MarshFNAIFEKYDEDKSAIVLINFLRHQQMMKIQLEMIA
Ga0182063_130628713300016781Salt MarshPFKDFNAIFEKYDEDKSAIVLINFLRHQQMMKIQLEMIA
Ga0181565_1007916613300017818Salt MarshKGFNAIFEKYDEDKSAIVLINFLRHQQRVKIQSEMIA
Ga0181565_1014268813300017818Salt MarshSGPFKDFNAIVEKYEADQSVIVLINFLRYQQRVKIQSEMIV
Ga0181565_1017920913300017818Salt MarshIKSGPFKDFNGIFERYDADQSAIILINFLRHQQKVKLKAEMIA
Ga0181565_1023195913300017818Salt MarshDFNAIVEKYEADQSVIVLINFLRYQQRVKIQSEMIA
Ga0181565_1026136413300017818Salt MarshVLIKSGPFKDFNAIVEKYEADQSVIVLINFLRHQQRVKIQSEMIA
Ga0181565_1026897633300017818Salt MarshGFNAIFEKYDEDKSAIVLINFLRHQQPVKIQSEMIA
Ga0181565_1056866223300017818Salt MarshFIKSGPFKDFNAIFEKYDEDKSAIVLINFLRHQQMMKIQLEMIA
Ga0181565_1070705823300017818Salt MarshQEVLIKSGPLKDFNGIFEKYEADQSAIVLINFLRHHQQVKVKLEAIS
Ga0181565_1102658113300017818Salt MarshFIKSGPFKDFNGIFEKYDADQSAIVLINFLRHQQRVKIQSEMIT
Ga0181584_1051345413300017949Salt MarshFKGFNGVFEKYEADQSVIVLINFLRHQQRVKIQSKMIA
Ga0181584_1058424113300017949Salt MarshSGPFKDFNAIVEKYEADQSVIVLINFLRYQQRVKIQSEMIA
Ga0181584_1069674713300017949Salt MarshDEVFIKSGPFKDFNAIFEKYDEDKSAIVLINFLRHQQRVKIQSEMIA
Ga0181584_1084309613300017949Salt MarshEVFIKSGPFKDFNAIFEKYDEDKSAIVIINFLRYQQRVKIQSEMIA
Ga0181584_1088802113300017949Salt MarshGFNAIFEKYDKDKSAIVLINFVRHQQRVKIQSEMIA
Ga0181584_1089433923300017949Salt MarshSGPFKDFNAIFEKYDEDKSAIVLINFLRRQQRVKIQSEMIA
Ga0181577_1006537673300017951Salt MarshVLIKSGPFKDFNAIFEKYDKDKSAIVLINFLRHQQRVKIQSEMIA
Ga0181577_1029131223300017951Salt MarshKSGPFKGFNAIFEKYDKDKSAIVLINFLRHQQWVKIQWEMIA
Ga0181577_1067676223300017951Salt MarshEEVFIKSGPFKDFNAIVEKYEADQSVIVLINFLRHQQQVKIQSEMIA
Ga0181583_1031899433300017952Salt MarshIKSGPFKDFNAIFEKYEADQSVIVLINFLRHQQRMKIQLEMIA
Ga0181583_1065557423300017952Salt MarshKDFNAIVEKYEADQSVIVLINFLRYQQRVKIQSEMIS
Ga0181580_1065973923300017956Salt MarshIKSGPFKDYNGIFEKYDADQSAIVLINFLRYQQRVKIQSEMIA
Ga0181571_1000978793300017957Salt MarshFKDFNAIVEKYEADQSVIVLINFLRYQQRVKIQSKVIA
Ga0181571_1001349793300017957Salt MarshPFKGFNAIFVKYDEDKSAIVLINFLRHQQRVKIQSEMIA
Ga0181571_1002118813300017957Salt MarshIKSGPFKDFNAIFEKYEADQSVIVLINFLRYQQRVKIQSEMIA
Ga0181571_1035396113300017957Salt MarshKGFNAIFEKYDKDKSAIVLINFLRHQQRVKIQSEMIA
Ga0181571_1080280413300017957Salt MarshFKDFNAIVEKYEADQSVIVLINFLRYQQRVKIQSEMIV
Ga0181582_1023554833300017958Salt MarshFNAIFEKYEADQSVIVLINFLRYQQRVKIQSEMIV
Ga0181581_1001961273300017962Salt MarshFKDFKGVFDKYDEDNSAIVLINFLRHQQQVKIQSEMIA
Ga0181581_1017652223300017962Salt MarshFNGVFDKYDADQSAIVLINFLRHQQRVKIKAEMIA
Ga0181581_1086768913300017962Salt MarshDEVVIKSGPFKDFNAIFEKYDANQSATVLINFLRSQQKVNIKLDAIS
Ga0181589_1004121463300017964Salt MarshPFKDFNAIVEKYEADQSVIVLINFLRHQQRVKIQSEMIV
Ga0181589_1021876813300017964Salt MarshPFKGFNAIFEKYDVDKSAIVLINFLRHQQRVKIQSEVIA
Ga0181589_1023074113300017964Salt MarshVFIKSGPFKGFNGVFEKYDKDKSAIILINFLRHQQRVKIQSQMIA
Ga0181589_1053129813300017964Salt MarshKGEEVFIKSGPFKDFNAIFENYDEDKSAIILINFLRHQQRVKIQLEMIA
Ga0181589_1080063023300017964Salt MarshLHQKGEEVLIKSGPFKDFNGIFEKYDANKSAIVLINFFRHQQQIKIKAEMIS
Ga0181589_1090108013300017964Salt MarshKSGPFKDFNAIFEKYDEDKSAIVLINFLRHQQRVKIQSEMIA
Ga0181590_1033491113300017967Salt MarshKGEEVFIKSGPFMDFNVIFEKYDEDKSAIVLINFLRHQQRVKIQSEMIA
Ga0181587_1040127833300017968Salt MarshFKGFNAIFEKYNEDKSAIVLINFLRHQQRVKIQSEMIV
Ga0181585_1019328113300017969Salt MarshSGPFKDFNAIFEKYDKDKSAIVLINFLRHQQRVKIQSEMIA
Ga0181576_1002981713300017985Salt MarshHQKGEEVFIKSGPFKDFNGVFEKYDVDNSAIVLINFLRNRQQVKIKADMIA
Ga0181576_1053353013300017985Salt MarshSGPFKDFNGIFENYDADQSAIVLINFLRHQQRVKIKAEMIA
Ga0181576_1076418423300017985Salt MarshLIKSGPLKDFNGIFEKYEADQSAIVLINFLRHHQQVKVKLEAIS
Ga0181576_1082619823300017985Salt MarshFKGFNAIFEKYDKDKSAIVLINFLRHQQRVKIQSKMIA
Ga0181569_1001170893300017986Salt MarshEEVLIKSGPFKDFNAIVEKYEADQSVIVLINFLRCQQRVKIQSEMIA
Ga0181569_1001437283300017986Salt MarshFKDFNAIFEKYDEDKSAIVLINFLRHQQWVKIQSEMIA
Ga0181569_1005132713300017986Salt MarshSGPFKDFNAIVEKYEADQSVIVLINFLRYQQRVKIQSEMIS
Ga0181569_1006390113300017986Salt MarshFNAIFEKYDKDKSAIVLINFLRHQQQVKIQSEMIA
Ga0181569_1014010013300017986Salt MarshFKDFNAIFEKYDEDKSAIVLINFLRHQQRVKIQSEMIA
Ga0181569_1028655213300017986Salt MarshKDFNGIFEKYDAEKSAIVLINFLRHQQRVKIQSEMIA
Ga0181569_1073151533300017986Salt MarshGEEVFIKSGPFKDFNGIFEKYEADQSAIVLINFLRHQKRLKIKAEMIA
Ga0181572_1006826743300018049Salt MarshSGPFKDFNAIVEKYEADQSVIVLINFLRHQQRVKIQSEMIA
Ga0181572_1044461113300018049Salt MarshFKGFNAIFEKYDEDKSAIVLINFLRHQQRVKIQSEMIA
Ga0181572_1073045413300018049Salt MarshDFNAIVEKYDKDKSVIVLINFLRYQQRVKIQSEMIA
Ga0181572_1078492913300018049Salt MarshFKDFNAIVEKYEADQSVIVLINFLRHQQQVKIQSEMIA
Ga0181567_1063956423300018418Salt MarshPFKDFNAIVEKYEADQSVIVLINFLRYQQRVKIHSEMIA
Ga0181592_1020047113300018421Salt MarshIKSGPFKDFNAIVEKYESDQSVIVLINFLRYQQRVKIQSEMIA
Ga0181592_1045673533300018421Salt MarshPFKGFNAIFEKYDKDKSAIVLINFLRHQQRVKIRSEMIV
Ga0181592_1046952923300018421Salt MarshPFKDFNAIFEKYDEDKSAIVLINFLRHQQWVKIQSEMIA
Ga0181592_1051793223300018421Salt MarshFKGFNGVFDKYDADQSAIVLINFLRHQQRVKIKAEMIA
Ga0181592_1058122713300018421Salt MarshFKGFNAIFEKYDKEKSAIVLINFIRHQQRVKIQSNMIA
Ga0181591_1029895613300018424Salt MarshKDFNAIVEKYEADQSVIVLINFLRYQQRVKIQSEMIA
Ga0181591_1055656013300018424Salt MarshFSGVFDSYDANQSANVLINFLRHEQLVKIKADMIA
Ga0181591_1099196313300018424Salt MarshFKDFNAIFEKYEGDQSVIVLINFLRYRQRVKIQSEMIA
Ga0181566_1003981713300018426Salt MarshIKSGPFKGFYGIFDKYDTDQSVIVLINFIRHQQRVKIQSEMIT
Ga0181566_1021616433300018426Salt MarshFNAIFEKYEADQSVVVLINFLRYQQRVKIQSEMIA
Ga0181566_1041448413300018426Salt MarshPFKDFNAIVEKYEADQSVIVLINFLRYQQRVKIQSKVIA
Ga0181566_1042709213300018426Salt MarshGPFKDFNAIVEKYEADQSVIVLINFLRYQQRVKIQSEMIV
Ga0181566_1088075923300018426Salt MarshGEEVFIKSVPFKDFNGIFEKYDTNQSAIVLINFLRNQQRVKIQSDMIA
Ga0181566_1106816113300018426Salt MarshKDFNAIVEKYEADQSVIVLINFLRHQQQVKIQSEMIA
Ga0181568_1060367113300018428Salt MarshSGPFKDFNAIFEKYNEDKSAIVLINFLRHQQLVKIQSEMIA
Ga0181568_1097273913300018428Salt MarshFKSFNAIFEKYDKDKSAIVLINFLRHQQRVKIQSEMIA
Ga0181568_1139798713300018428Salt MarshKDFNAIFEKYDEDKSAIVLINFLRHQQRVKIQSEMIA
Ga0182061_134841213300019266Salt MarshKSGPFKDFNAIVEKYEADQSVIVLINFLRYQQRVQIQSEMIT
Ga0182081_165507213300019277Salt MarshFKDFNAIVEKYEADQSVIVLINFLRYQQRVKIQSKMIA
Ga0181588_1012172113300020168Salt MarshGPFKSFNAIFEKYDKDKSAIVLINFLRHQQRVKIQSEMIA
Ga0181570_1001910153300020207Salt MarshKSGPFKDFNAIVEKYEADQSVIVLINFLRYQQRVKIQSEMIS
Ga0181570_1025833713300020207Salt MarshPFKDFNAIFEKYDEDKSAIVLINFLRHQQRVKIQSEMIA
Ga0181570_1027063813300020207Salt MarshPFKGFNAIFEKYEADQSVIVLINFLRHQQRVKIQSEMIA
Ga0181570_1032783023300020207Salt MarshFNAIVEKYDADQSVIVLINFLRHQQRVKIQSEMIA
Ga0181570_1039585123300020207Salt MarshVFIKSGPFKGFNAIFEKYNEDKSVIVLINFLRHQQQVKIQSEMIA
Ga0181570_1051967723300020207Salt MarshPFKGFNGIFEKYGADQSAIILINFLRHRQRVKIKAEMIA
Ga0255780_1039752313300022935Salt MarshEEVFIKSGPFKDFNGVFEKYEADQSAIVLINFLRHQQRVKIQSEMIA
Ga0255754_1012062843300022939Salt MarshIKSGPFKDFNAIVEKYEADQSVIVLINFLRYQQRVKIQSEMIV
Ga0255754_1032407733300022939Salt MarshGPFKDFNAIFEKYNEDKSAIVLINFLRHQQLVKIQSEMIA
Ga0255754_1045790923300022939Salt MarshFKGFNAIFEKYDKDKSAIVLINFLRHQQRVKIQSEMIA
Ga0255764_1010329523300023081Salt MarshQKGEEVFIKSGPFKDFKGIFEKYEADNAVIVLINFLRHQQRLKIKPDMII
Ga0255764_1019006223300023081Salt MarshFIKSGPFKDFNGVFDKYDADQSAIVLINFLRHQQRVKIKAEMIA
Ga0255764_1037121013300023081Salt MarshFNAIFEKYDGDKSAIVLINFLRHQQRVKIQTGMIA
Ga0255764_1049799213300023081Salt MarshEEVLIKSGPFKDFNAIFEKYNKDKSAIVLINFLRHQQRVKIQSEMIA
Ga0255778_1012323813300023084Salt MarshILIKSGPFKDFNAIFRNYDADQSAIVLINFLRNKLQVRVKLDAIS
Ga0255778_1039732423300023084Salt MarshFNAIFEKYDKDKSAIVLINFLRHQQMVKIQSEMVA
Ga0255778_1043126923300023084Salt MarshSGPCKGFNGVFDKYDADQSAIVLINFLRHQQRVKIKAEMIA
Ga0255774_1000351513300023087Salt MarshIKSGPFKDFNAIVEKYEADQSVIVLINFLRYQQRVKIQSEMIS
Ga0255774_1001683073300023087Salt MarshFKDFNAIFEKYNEDKSAIVLINFLRHQQLVKIQSEMIA
Ga0255774_1011837033300023087Salt MarshIKSGPFKDFNAIVEKYEADQSVIVLINFLRYQQRVKIQSEMIA
Ga0255774_1014350613300023087Salt MarshFIKSGPLKGFNAIFEKYDKDKSAIVLINFLRHQQRVKIQSEMIA
Ga0255774_1038087213300023087Salt MarshFNAIFEKYDKDKSAIVLINFVRHQQRVKIQSEMIA
Ga0255774_1042375313300023087Salt MarshGFNAIFEKYDEDKSAIVLINFLRHQQRVKIQSEMIA
Ga0255782_1017655613300023105Salt MarshIKSGPFKDFNGIFEKYDADKSAIVLINFLRHQQRVKIQSEMIA
Ga0255743_1027856133300023110Salt MarshVLIKSGPFKDFNAIFEKYDEDKSAIVLINFLRYQQRVKIQSEMIA
Ga0255760_1009265813300023115Salt MarshGPFKGFNAIFEKYDKGKSAIVLINFLRHQQRVKVQSEMIA
Ga0255760_1011344133300023115Salt MarshFNAIFEKYDEDKSAIVLINFLRHQQQVKIQPEMIA
Ga0255760_1017559513300023115Salt MarshLIKSGPFKNFNAIFEKYDVDQSVIVLINFLRHQQRVKIQSEMIA
Ga0255760_1030633213300023115Salt MarshFKDFNAIFEKYDKDKSAIVLINFLRHQQMVKIQSEMVA
Ga0255751_1024930813300023116Salt MarshFIKSGPFKGFNGVFEKYDKDKSAIILINFLRHQQRVKIQSQMIA
Ga0255751_1043470823300023116Salt MarshFKDFNGVFEKYDEDKSVIVLINFLRHQQRVKIQSEMIA
Ga0255757_1029211013300023117Salt MarshFNGIFENYDADQSAIVLINFLRHQQRVKIQSEMIA
Ga0255762_1010142113300023119Salt MarshDFNGIFEKYDVDKSAIVLINFLRHHQQVKVKLEAIS
Ga0255762_1033037633300023119Salt MarshDFNAIVEKYEADQSVIVLINFLRYQQRVKIQSKVIA
Ga0255762_1050046723300023119Salt MarshFKSFNGIFENYDADQSAIVLVNFLRHQQRVKIKAEMIG
Ga0255777_1006322513300023175Salt MarshFNAIFEKYDEDKSAIVLINFLRHQQRVKIQSEMIA
Ga0255777_1026263913300023175Salt MarshFKDFNAIFEKYDEDNSAIVLINFLRHLQRVKIQSEMIA
Ga0255777_1052384233300023175Salt MarshKSGPFKDFNAIVEKYEADQSVIVLVNFLRYQQRVKIQSEMIA
Ga0255772_1003973053300023176Salt MarshIKSGPFKDFNAIVEKYEADQSVIVLINFLRYQQRVKIQSKMIA
Ga0255772_1007787733300023176Salt MarshKSGPFKDFNAIFRNYDADQSAIVLINFLRNKLQVRVKLDAIS
Ga0255768_1057555513300023180Salt MarshEVFIKSGPFKDFNAIFEKYDADKSVIVLINFLRHQQRVKIQSEMIA


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