Metagenome Family F072678

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F072678
Family Type	Metagenome
Number of Sequences	121
Average Sequence Length	52 residues
Representative Sequence	VAILKMLAVLIAALGMAAVESVRPSPATDEDDVALFVGSAHPLAAKLPISRRRR
Number of Associated Samples	91
Number of Associated Scaffolds	121

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	24.79 %
% of genes near scaffold ends (potentially truncated)	24.79 %
% of genes from short scaffolds (< 2000 bps)	76.03 %
Associated GOLD sequencing projects	81
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.38

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (86.777 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (25.620 % of family members)
Environment Ontology (ENVO)	Unclassified (33.058 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (45.455 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 24.39% β-sheet: 0.00% Coil/Unstructured: 75.61%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.38
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.38
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 121 Family Scaffolds
PF02811	PHP	37.19
PF07733	DNA_pol3_alpha	9.09
PF00072	Response_reg	2.48
PF04014	MazE_antitoxin	1.65
PF13185	GAF_2	1.65
PF00154	RecA	0.83
PF13188	PAS_8	0.83
PF00293	NUDIX	0.83
PF14579	HHH_6	0.83
PF01370	Epimerase	0.83

COG ID	Name	Functional Category	% Frequency in 121 Family Scaffolds
COG0587	DNA polymerase III, alpha subunit	Replication, recombination and repair [L]	9.09
COG2176	DNA polymerase III, alpha subunit (gram-positive type)	Replication, recombination and repair [L]	9.09
COG0468	RecA/RadA recombinase	Replication, recombination and repair [L]	0.83

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	86.78 %
Unclassified	root	N/A	13.22 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	86.78 %
Unclassified	root	N/A	13.22 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	86.78 %
Unclassified	root	N/A	13.22 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	78.51 %
Unclassified	root	N/A	13.22 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	58.68 %
Unclassified	root	N/A	13.22 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1.65 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	57.02 %
Unclassified	root	N/A	13.22 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.83 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	57.02 %
Unclassified	root	N/A	13.22 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.83 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.83 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000887\|AL16A1W_10068940	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	7817	Open in IMG/M
3300001538\|A10PFW1_10989003	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2511	Open in IMG/M
3300004643\|Ga0062591_100615842	All Organisms → cellular organisms → Bacteria	963	Open in IMG/M
3300005166\|Ga0066674_10157444	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1074	Open in IMG/M
3300005172\|Ga0066683_10253568	All Organisms → cellular organisms → Bacteria	1091	Open in IMG/M
3300005175\|Ga0066673_10034918	All Organisms → cellular organisms → Bacteria → Proteobacteria	2445	Open in IMG/M
3300005186\|Ga0066676_10669805	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	706	Open in IMG/M
3300005444\|Ga0070694_100250219	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1340	Open in IMG/M
3300005445\|Ga0070708_100105978	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2580	Open in IMG/M
3300005445\|Ga0070708_101179637	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	716	Open in IMG/M
3300005446\|Ga0066686_10011830	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	4576	Open in IMG/M
3300005446\|Ga0066686_10103747	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1834	Open in IMG/M
3300005450\|Ga0066682_10630590	Not Available	669	Open in IMG/M
3300005467\|Ga0070706_100669890	Not Available	963	Open in IMG/M
3300005467\|Ga0070706_101848704	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	548	Open in IMG/M
3300005468\|Ga0070707_100040138	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	4477	Open in IMG/M
3300005468\|Ga0070707_100302014	All Organisms → cellular organisms → Bacteria	1555	Open in IMG/M
3300005536\|Ga0070697_100687011	Not Available	902	Open in IMG/M
3300005536\|Ga0070697_101360935	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	634	Open in IMG/M
3300005540\|Ga0066697_10834343	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	500	Open in IMG/M
3300005545\|Ga0070695_100639661	All Organisms → cellular organisms → Bacteria → Terrabacteria group	839	Open in IMG/M
3300005556\|Ga0066707_10079000	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1981	Open in IMG/M
3300005557\|Ga0066704_10301113	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1083	Open in IMG/M
3300005558\|Ga0066698_10728933	Not Available	650	Open in IMG/M
3300005558\|Ga0066698_11059007	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	514	Open in IMG/M
3300005576\|Ga0066708_10181805	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1310	Open in IMG/M
3300005616\|Ga0068852_101963648	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	607	Open in IMG/M
3300006173\|Ga0070716_100319036	All Organisms → cellular organisms → Bacteria	1088	Open in IMG/M
3300006852\|Ga0075433_10462788	Not Available	1118	Open in IMG/M
3300006854\|Ga0075425_100072072	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	3892	Open in IMG/M
3300006854\|Ga0075425_100114537	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	3075	Open in IMG/M
3300007076\|Ga0075435_100764586	All Organisms → cellular organisms → Bacteria → Terrabacteria group	841	Open in IMG/M
3300009012\|Ga0066710_100613879	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1651	Open in IMG/M
3300009012\|Ga0066710_100912251	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1353	Open in IMG/M
3300009012\|Ga0066710_102722357	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	704	Open in IMG/M
3300009012\|Ga0066710_104778118	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	507	Open in IMG/M
3300009038\|Ga0099829_10127588	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2010	Open in IMG/M
3300009089\|Ga0099828_10395117	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1247	Open in IMG/M
3300009090\|Ga0099827_10178708	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1754	Open in IMG/M
3300009147\|Ga0114129_13326875	All Organisms → cellular organisms → Bacteria → Terrabacteria group	519	Open in IMG/M
3300009162\|Ga0075423_10011331	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	8605	Open in IMG/M
3300009162\|Ga0075423_11828826	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	655	Open in IMG/M
3300010304\|Ga0134088_10519387	All Organisms → cellular organisms → Bacteria → Terrabacteria group	588	Open in IMG/M
3300010333\|Ga0134080_10127353	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1066	Open in IMG/M
3300010396\|Ga0134126_12509792	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	560	Open in IMG/M
3300012014\|Ga0120159_1166434	Not Available	600	Open in IMG/M
3300012198\|Ga0137364_10261410	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1280	Open in IMG/M
3300012200\|Ga0137382_10049298	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2623	Open in IMG/M
3300012200\|Ga0137382_10585383	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	796	Open in IMG/M
3300012200\|Ga0137382_10767784	Not Available	693	Open in IMG/M
3300012203\|Ga0137399_10096015	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2282	Open in IMG/M
3300012203\|Ga0137399_11022114	Not Available	696	Open in IMG/M
3300012208\|Ga0137376_10170721	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1876	Open in IMG/M
3300012208\|Ga0137376_10330907	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1322	Open in IMG/M
3300012208\|Ga0137376_11236744	Not Available	636	Open in IMG/M
3300012211\|Ga0137377_10132246	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2384	Open in IMG/M
3300012211\|Ga0137377_10466425	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1201	Open in IMG/M
3300012356\|Ga0137371_10745021	All Organisms → cellular organisms → Bacteria → Terrabacteria group	748	Open in IMG/M
3300012532\|Ga0137373_10443903	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1000	Open in IMG/M
3300012582\|Ga0137358_10246918	Not Available	1215	Open in IMG/M
3300012918\|Ga0137396_10053920	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2766	Open in IMG/M
3300012922\|Ga0137394_10328387	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1306	Open in IMG/M
3300012923\|Ga0137359_10437350	Not Available	1158	Open in IMG/M
3300012927\|Ga0137416_10550056	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1000	Open in IMG/M
3300012927\|Ga0137416_10706866	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	886	Open in IMG/M
3300012927\|Ga0137416_11646937	All Organisms → cellular organisms → Bacteria → Terrabacteria group	585	Open in IMG/M
3300012930\|Ga0137407_11588071	Not Available	623	Open in IMG/M
3300012944\|Ga0137410_10498664	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	995	Open in IMG/M
3300014154\|Ga0134075_10117185	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1130	Open in IMG/M
3300017654\|Ga0134069_1373485	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	514	Open in IMG/M
3300018027\|Ga0184605_10005069	All Organisms → cellular organisms → Bacteria → Terrabacteria group	4728	Open in IMG/M
3300018027\|Ga0184605_10016221	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2929	Open in IMG/M
3300018028\|Ga0184608_10000261	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	13455	Open in IMG/M
3300018028\|Ga0184608_10066194	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1456	Open in IMG/M
3300018028\|Ga0184608_10518332	All Organisms → cellular organisms → Bacteria → Terrabacteria group	509	Open in IMG/M
3300018051\|Ga0184620_10216837	All Organisms → cellular organisms → Bacteria → Terrabacteria group	639	Open in IMG/M
3300018054\|Ga0184621_10131859	Not Available	896	Open in IMG/M
3300018054\|Ga0184621_10225130	Not Available	671	Open in IMG/M
3300018061\|Ga0184619_10066260	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1590	Open in IMG/M
3300018482\|Ga0066669_10394834	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1169	Open in IMG/M
3300018482\|Ga0066669_11039224	All Organisms → cellular organisms → Bacteria → Terrabacteria group	740	Open in IMG/M
3300019868\|Ga0193720_1040908	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	660	Open in IMG/M
3300019885\|Ga0193747_1001290	All Organisms → cellular organisms → Bacteria	6943	Open in IMG/M
3300019885\|Ga0193747_1007371	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2660	Open in IMG/M
3300020004\|Ga0193755_1010670	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	3005	Open in IMG/M
3300020022\|Ga0193733_1095957	All Organisms → cellular organisms → Bacteria → Terrabacteria group	829	Open in IMG/M
3300020059\|Ga0193745_1121954	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	541	Open in IMG/M
3300021078\|Ga0210381_10093420	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	967	Open in IMG/M
3300021080\|Ga0210382_10044141	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1732	Open in IMG/M
3300023058\|Ga0193714_1014603	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1179	Open in IMG/M
3300025910\|Ga0207684_10027171	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	4880	Open in IMG/M
3300025922\|Ga0207646_10000840	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	39941	Open in IMG/M
3300025922\|Ga0207646_11633275	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	555	Open in IMG/M
3300025939\|Ga0207665_10322039	All Organisms → cellular organisms → Bacteria	1160	Open in IMG/M
3300025949\|Ga0207667_12169752	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	513	Open in IMG/M
3300026305\|Ga0209688_1072986	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	618	Open in IMG/M
3300026529\|Ga0209806_1111703	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1136	Open in IMG/M
3300026532\|Ga0209160_1154945	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1039	Open in IMG/M
3300026536\|Ga0209058_1085469	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1641	Open in IMG/M
3300026537\|Ga0209157_1143197	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1082	Open in IMG/M
3300026548\|Ga0209161_10188414	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1155	Open in IMG/M
3300027587\|Ga0209220_1107836	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	729	Open in IMG/M
3300027846\|Ga0209180_10418827	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	757	Open in IMG/M
3300027875\|Ga0209283_10455550	All Organisms → cellular organisms → Bacteria → Terrabacteria group	828	Open in IMG/M
3300027882\|Ga0209590_10551223	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	743	Open in IMG/M
3300027903\|Ga0209488_10830106	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	653	Open in IMG/M
3300028536\|Ga0137415_10036758	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4806	Open in IMG/M
3300028536\|Ga0137415_10753036	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	785	Open in IMG/M
3300028768\|Ga0307280_10016532	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2078	Open in IMG/M
3300028784\|Ga0307282_10463207	Not Available	615	Open in IMG/M
3300028819\|Ga0307296_10009815	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	5010	Open in IMG/M
3300028824\|Ga0307310_10716631	Not Available	514	Open in IMG/M
3300028828\|Ga0307312_10097156	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1821	Open in IMG/M
3300028881\|Ga0307277_10000057	All Organisms → cellular organisms → Bacteria	32736	Open in IMG/M
3300028881\|Ga0307277_10132673	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1073	Open in IMG/M
3300028884\|Ga0307308_10016494	All Organisms → cellular organisms → Bacteria	3354	Open in IMG/M
3300031720\|Ga0307469_10049317	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2632	Open in IMG/M
3300031720\|Ga0307469_10243725	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1440	Open in IMG/M
3300031820\|Ga0307473_10004368	All Organisms → cellular organisms → Bacteria	4418	Open in IMG/M
3300031820\|Ga0307473_11000761	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	610	Open in IMG/M
3300032180\|Ga0307471_102093827	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	711	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	92.56%
Host-Associated	Host-Associated	7.44%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	83.47%
Aquatic	Environmental → Aquatic	9.09%
Plants	Host-Associated → Plants	7.44%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	83.47%
Sediment	Environmental → Aquatic → Sediment	7.44%
Rhizosphere	Host-Associated → Plants → Rhizosphere	5.79%
Freshwater	Environmental → Aquatic → Freshwater	1.65%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.65%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	69.42%
Loam	Environmental → Terrestrial → Soil → Loam	14.05%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	7.44%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	5.79%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.65%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.65%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	42.15%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	19.83%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	12.40%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	7.44%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	5.79%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	4.13%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	2.48%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.65%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.65%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.83%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.83%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.83%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	25.62%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	14.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	12.40%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	12.40%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	7.44%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	5.79%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	4.96%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	4.13%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	3.31%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	2.48%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	1.65%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.65%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.83%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.83%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.83%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000887	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A3-65cm-16A)- 1 week illumina	Environmental	Open in IMG/M
3300001538	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A10-PF 4A)- 1 week illumina	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005175	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental	Open in IMG/M
3300005450	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental	Open in IMG/M
3300005557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153	Environmental	Open in IMG/M
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental	Open in IMG/M
3300005576	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157	Environmental	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300010304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015	Environmental	Open in IMG/M
3300010333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300012014	Permafrost microbial communities from Nunavut, Canada - A10_80cm_6M	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012532	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300014154	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09212015	Environmental	Open in IMG/M
3300017654	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018051	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_b1	Environmental	Open in IMG/M
3300018054	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1	Environmental	Open in IMG/M
3300018061	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300019868	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2s1	Environmental	Open in IMG/M
3300019885	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1m2	Environmental	Open in IMG/M
3300020004	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1a2	Environmental	Open in IMG/M
3300020022	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1s2	Environmental	Open in IMG/M
3300020059	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1a2	Environmental	Open in IMG/M
3300021078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_coex redo	Environmental	Open in IMG/M
3300021080	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_coex redo	Environmental	Open in IMG/M
3300023058	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2m1	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025949	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026305	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_142 (SPAdes)	Environmental	Open in IMG/M
3300026529	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152 (SPAdes)	Environmental	Open in IMG/M
3300026532	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153 (SPAdes)	Environmental	Open in IMG/M
3300026536	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147 (SPAdes)	Environmental	Open in IMG/M
3300026537	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135 (SPAdes)	Environmental	Open in IMG/M
3300026548	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155 (SPAdes)	Environmental	Open in IMG/M
3300027587	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M3 (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027875	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028768	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_119	Environmental	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300028824	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_197	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300028881	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116	Environmental	Open in IMG/M
3300028884	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AL16A1W_100689403	3300000887	Permafrost	MLAVLIAALGMAAFESVRRTPAKDEDDVALFVGSAHPLAAKRPISRRAR*
A10PFW1_109890033	3300001538	Permafrost	VGILKMLAVLIAALGMAAFESVRRTPAKDEDDVALFVGSAHPLAAKRPISRRAR*
Ga0062591_1006158422	3300004643	Soil	VGIVKLLAVLVVALGMAAVESVRPRATRDEDDDALFVGSAHALPAKRSQKRAQLG*
Ga0066674_101574442	3300005166	Soil	VAILKMLALLIAALGMAAVESVRPSPATDEDDVALFVGSAHPLRANPISRLRR*
Ga0066683_102535682	3300005172	Soil	VAILKMLALLIAAVGMAALESVRPAAAKDDDDVALFVGSAHPLAATRPISRRPR*
Ga0066673_100349181	3300005175	Soil	MGLIKMLGVLVAVLVMAALESVRPGRANDEDDTALFVGSAHPLAAKPPSPRLPR*
Ga0066676_106698052	3300005186	Soil	VGALKMLALLVAALGMAAFESVRPSAAKDDDDVGLFVGSAHALPANPISRRRR*
Ga0070694_1002502191	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	MGVLKMLAVLVAALGMAALEGVDSSRAKDEEVVALFVGSAHPIAARFPNSRHR*
Ga0070708_1001059783	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MLVVLIAALGMAALESVESSRAKDDDDIALFVGSAHPLAAKLPISRRR*
Ga0070708_1011796372	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MLAVLIAALGMAALESVESSRAKDDDDIALFVGSAHPLAAKLPISRRR*
Ga0066686_100118303	3300005446	Soil	MLAVLIAALGMAAFESVRRDPAKDDDDVVLFVGSAHPLRANRPISRRRR*
Ga0066686_101037472	3300005446	Soil	MLAVLIAALGMAAFESVRPTAAKDDDDVGLFVGSAHALPANPLSRRRR*
Ga0066682_106305901	3300005450	Soil	GMAALESVRPAAAKDDDDVALFVGSAHPLAATRPISRRPR*
Ga0070706_1006698901	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	VGVLKILAVLIAALGMAAMESVRPTPAKDEDDVALFVGSAHALPINRRRH*
Ga0070706_1018487042	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	LPCMGVLKMLAVLVAALGMAALEGVDSSRAKDEEVVALFVGSAHPIAARFPNSRHR*
Ga0070707_1000401382	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MLAVLVAALGMAALEGVDSSRAKDEEVVALFVGSAHPIAARFPNSRHR*
Ga0070707_1003020142	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	LKVLAVLIAALGMAALESVESSRAKDEDDIALFVGSAHALAANRPISRRR*
Ga0070697_1006870111	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	VGVLKILAVLIAALGMAAMESVRPTPAKDEDDVALFVGSAHALPINRRRR*
Ga0070697_1013609351	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	VGVLKLLAVLIAAVGMAAVESVRPTPAKDDDDVGLFVGSAHPLPAKPPMSLRRR*
Ga0066697_108343432	3300005540	Soil	LLIAALGMAAVESVRPSPATDEDDVALFVGSAHPLRANPISRLRR*
Ga0070695_1006396611	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	MLAVVTAVLWMAAVESVQPRRAKDEDDVALFVGSAHALPAKRSQKRAQLG*
Ga0066707_100790002	3300005556	Soil	MLALLIAALGMAAVESVRPSPATDEDDVALFVGSAHPLRANPISRLRR*
Ga0066704_103011133	3300005557	Soil	VAILKMLAVLIAALGMAAVESVRPSPATDEDDIALFVGSAHPLAAKLPISRRRR*
Ga0066698_107289331	3300005558	Soil	VAILKMLALLIAAVGMAALESVRPAAAKDDDDVALFVGSAHPLAAKRPISRR
Ga0066698_110590072	3300005558	Soil	VGALKMLAVLIAALGMAAFESVRPTAAKDDDDVGLFVGSAHALPANPLSRRRR*
Ga0066708_101818051	3300005576	Soil	MLGVLVAVLVMAALESVRPGRANDEDDTALFVGSAHPLAAKPPS
Ga0068852_1019636482	3300005616	Corn Rhizosphere	FKMLAVVTAVLWMAAVESVQPRRAKDEDDVALFVGSAHALPAKRSQKRAQLG*
Ga0070716_1003190362	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MLAVLIAALGMAALESVESTRAKDEDDIALFVGSAHALAVNRPISRRR*
Ga0075433_104627882	3300006852	Populus Rhizosphere	MLTLLIAALVMAALESVRPSRANDEDDVALFVGSAHPLAAKRPISRRPAK*
Ga0075425_1000720723	3300006854	Populus Rhizosphere	VGILKMLTLLIAALVMAALESVRPSRANDEDDVALFVGSAHPLAAKRPISRRPAK*
Ga0075425_1001145371	3300006854	Populus Rhizosphere	LKVLAVLVVALGMAALEAVDSSRAKDEEVVALFVGSAHPLAARVPNTRHR*
Ga0075435_1007645862	3300007076	Populus Rhizosphere	MLTLLIAALVMAALESVRPSRANDEDDVALFVGSAHPLAAKRPIS
Ga0066710_1006138792	3300009012	Grasslands Soil	VAILKMLALLIAALGMAALESVRPAAAKDDDDVALFVGSAHPLAAKRPISRRTR
Ga0066710_1009122513	3300009012	Grasslands Soil	VAILKMLALLIAALGMAAVESVRPSPATDEDDVALFVGSAHPLRANPIS
Ga0066710_1027223571	3300009012	Grasslands Soil	MLAVLIAALGMAAFESVRPSPVKDDDDVGLFVGSAHPLPANPPISRRRR
Ga0066710_1047781182	3300009012	Grasslands Soil	VGALKILAVLIAALGMAAFESVRPSAAKDDDDVGLFVGSAHALPANPISRRRR
Ga0099829_101275881	3300009038	Vadose Zone Soil	MRPASLFPSLVGVLKMLAVLIVALGMAALESVESSRAKDEDDIALFVGSAHPLAAKRPISRRR*
Ga0099828_103951172	3300009089	Vadose Zone Soil	VGVLKILAVLIAALGMAAVESVRPNPAKDADDVALFVGSAHPLLAKLPMSNRRRR*
Ga0099827_101787081	3300009090	Vadose Zone Soil	MLAVLIAAVGMAMVESIRPMPVKDDDDVGLFVGSAHPLPAKLPVSRRRRSIA
Ga0114129_133268751	3300009147	Populus Rhizosphere	VGIVKVLAVLVAVLWMAAIESVQPSRAKDEEDVALFVGSAHARSQKRAQLG*
Ga0075423_100113318	3300009162	Populus Rhizosphere	MVTLLIAALVMAALESVRPSRANDEDDVALFVGSAHPLAAKRPISRRPAK*
Ga0075423_118288262	3300009162	Populus Rhizosphere	LVAALGLAALEAVDSSRAKDEEVVALFVGSAHPLAARVPNSGHR*
Ga0134088_105193872	3300010304	Grasslands Soil	VGILKMLAVLIAALGMAAFESVRPSAAKDDDDVGLFVGSAHALPANPLSRRRR*
Ga0134080_101273532	3300010333	Grasslands Soil	ACSIGCVAILKMLAVLIAALGMAAVESVRPSPATDEDDIALFVRSAHPLAAKLPISRRRR
Ga0134126_125097922	3300010396	Terrestrial Soil	VAILKMLAVLTAVLWMAAVESVQPRRAKDEDDVALFVGSAHALPEKRSQKRAQLG*
Ga0120159_11664342	3300012014	Permafrost	ILKMLAVLIAALGMAAFESVRRTPAKDEDDVALFVGSAHPLAAKRPISRRAR*
Ga0137364_102614102	3300012198	Vadose Zone Soil	VAILKMLALLIAALGMAALESFRPAAANDDDDVALFVGSAHPLAAKRPISRRTR*
Ga0137382_100492981	3300012200	Vadose Zone Soil	MGILKLLAVVTAVLWMAAVESVRPSRAKDEDDVALFVGSAHPLAANRPIARRPR*
Ga0137382_105853831	3300012200	Vadose Zone Soil	VAILKMLALLIAALGMAAVESFRPAGAKDEDDDALFVGSAHALPASQRGR*
Ga0137382_107677842	3300012200	Vadose Zone Soil	MAILKMLAVLIAALVMAALESVRSSPAKDGDDVALFVGSAHALPADRSQKRGQLD*
Ga0137399_100960152	3300012203	Vadose Zone Soil	MLAVLIAVLVMAALESVRPGAKDEDDTALFVGSAHALAAKPPSARPLR*
Ga0137399_110221142	3300012203	Vadose Zone Soil	VGVLKVLAVLIAALGMAAVESVRPTPAKDEDDVALFVGSAHPLVAKLRIDRRG*
Ga0137376_101707212	3300012208	Vadose Zone Soil	VAILKMLAVLIAALGMAAVESVRPSPATDEDDVALFVGSAHPLAAKLPISRRRR*
Ga0137376_103309072	3300012208	Vadose Zone Soil	MGIVKLLAVLIAVLWMAAVESVQPSRAKDEDDVALFVGSAHPLAANRPIARRPR*
Ga0137376_112367442	3300012208	Vadose Zone Soil	MAILKMLAVLIAALVMAALESVRSSPAKDGDDVALFVGSAHALPADRSQKRGQLG*
Ga0137377_101322462	3300012211	Vadose Zone Soil	VGLLKVLAVLIAALGMAAMESVRPTPAKDEDDVALFVGSAHALPINRRRR*
Ga0137377_104664252	3300012211	Vadose Zone Soil	VAILKMLALLIAALGMAAVESVRPSPATDEDDVALFVGSAHPLAAKASISRRRR*
Ga0137371_107450212	3300012356	Vadose Zone Soil	MLAVLIAALGMAAVESIQPTRANDEDDVALFVGSAHPLPAKRPISRRPR
Ga0137373_104439032	3300012532	Vadose Zone Soil	ALKMLAVLIAALGMAAFESVRAKPATDEDVALFVGSAHPLPVKLPIDRRRH*
Ga0137358_102469182	3300012582	Vadose Zone Soil	VGVLKILAVLIAALGMAAVESVRAKPATDEDIALFVGSAHPLVAKLRINRRRG*
Ga0137396_100539204	3300012918	Vadose Zone Soil	VAILKLLALLTAALGMAALESVRPARAKDEDEDALFVGSAHALPISRRGR*
Ga0137394_103283872	3300012922	Vadose Zone Soil	VAILKLLALLIAALGMAALESVRPARAKDEDDDALFVGSAHPLAAKLPTGRRPR*
Ga0137359_104373501	3300012923	Vadose Zone Soil	LGCVGVVKILAVLIAALGMAAVESVRAKPATDEDIALFVGSAHPLVAKLRINRRRG*
Ga0137416_105500561	3300012927	Vadose Zone Soil	VAILKLLALLTAALGMAALESVRPARAKDEDDDALFVGSAHALPISRRGR*
Ga0137416_107068662	3300012927	Vadose Zone Soil	VGVLKILAVLIAALGMAAMESVRPTPVKDEDDVALFVGSAHALPINRRRR*
Ga0137416_116469372	3300012927	Vadose Zone Soil	VAILKLVALLIAALGMAALESVRPARAKDEDEDALFVGSAHALPISRCGR*
Ga0137407_115880712	3300012930	Vadose Zone Soil	MGVFKMLVVLVAALAMAAFESVRAAPAKDEDDVALFVGSAHALAQKAFVRRPRT*
Ga0137410_104986642	3300012944	Vadose Zone Soil	MLAVLIAALGMAAFESVRPTAAKEEDDVALFVGSAHPLLAKPINLRRR*
Ga0134075_101171852	3300014154	Grasslands Soil	MLAVLIAALGMAAFESVRRDPAKDDDDVGLFVGSAHPLRANRSISRRRR*
Ga0134069_13734852	3300017654	Grasslands Soil	MLALLVAALGMAAFESVRPSAAKDDDDVGLFVGSAHALPANPISRRRR
Ga0184605_100050694	3300018027	Groundwater Sediment	MLAVLIAVLWMAALESVRPRAKDEEDVALFVGSAHPLAVSRPKRAIR
Ga0184605_100162211	3300018027	Groundwater Sediment	MLAVLIAALGMAAAESVRPARPNDDDDVALFVGSAHPLAAKRPISRRVR
Ga0184608_100002613	3300018028	Groundwater Sediment	MLKMLAVLIAALGMAAAESVRPARPNDDDDVALFVGSAHPLAAKSPISRRVR
Ga0184608_100661942	3300018028	Groundwater Sediment	VGILKMLVVLVAALGMAAVESVRPAPAKDEDDVALFVGSAHALAAKRPISRRAR
Ga0184608_105183322	3300018028	Groundwater Sediment	VGILKMLAVLAVALGMAAVESVRPGPARDEDDDALFVGSAHPLALRLPINRRRR
Ga0184620_102168372	3300018051	Groundwater Sediment	VGILKMLAVLVVALGMAAVESVRPGPARDEDDDALFVGSAHPLALRLPINRRRR
Ga0184621_101318591	3300018054	Groundwater Sediment	LIAALGMAAAESVRPARPNDDDDVALFVGSAHPLAAKRPISRRVR
Ga0184621_102251302	3300018054	Groundwater Sediment	VGILKMLVVLVAALGMAAVESVRPAPAKDEDDVALFVGSAHALAAKRRISRRAR
Ga0184619_100662602	3300018061	Groundwater Sediment	VAILKMLAVLIAALGMAAAESVRPARPNDDDDVALFVGSAHPLAAKRP
Ga0066669_103948342	3300018482	Grasslands Soil	MLGVLVAVLVMAALESVRPGRANDEDDTALFVGSAHPLAAKPPSPRLPR
Ga0066669_110392241	3300018482	Grasslands Soil	MAILKMLAVLIAVLWMAAVESVRPSRAKDEDDVALFVGSAHPLAANRPITTRRPR
Ga0193720_10409081	3300019868	Soil	AVLIVALGMAAVESVRPAPARDEDDDALFVGSAHALPVKRSQKRAQLG
Ga0193747_10012903	3300019885	Soil	MPILKMLAVLIAALGMAAVESVRSSPAKDEDDVALFVGSAHPLAANRPITRRPR
Ga0193747_10073712	3300019885	Soil	VGIVKTLAFLVAALGMAAVESIRPTPAKDDDDVALFVGSAHALPAKRSQKRTQLV
Ga0193755_10106701	3300020004	Soil	VGILKMLVVLIAALGMAAVESVRSSPARDEDDDALFVGSAHALPARRSQKRTQLG
Ga0193733_10959571	3300020022	Soil	MPILKMLAVLIAALGMAAVESVRSAPAKDEDDVALFVGSAHPLVANR
Ga0193745_11219542	3300020059	Soil	VGILKMLVVLIAALGMAAVESVRSSPARDEDDDALFVGSAHALPARRSQKRAQLG
Ga0210381_100934203	3300021078	Groundwater Sediment	VGILKMLVVLVAALGMAAVESVRPAPAKDEDDVALFVGSAHALAAKRPIRRRPR
Ga0210382_100441411	3300021080	Groundwater Sediment	VAILKMLAVLIAALGMAAAESVRPARPNDDDDVALFVGSAHPLAAKRPISRRVR
Ga0193714_10146032	3300023058	Soil	VGIFKMLAVLIVALGMAAVESVRPAPARDEDDDALFVGSAHALPVKRSQKRAQLG
Ga0207684_100271713	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MGVLKMLAVLVAALGMAALEGVDSSRAKDEEVVALFVGSAHPIAARFPNSRHR
Ga0207646_1000084025	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MLAVLVAALGMAALEGVDSSRAKDEEVVALFVGSAHPIAARFPNSRHR
Ga0207646_116332752	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	LAQVGVLKVLAVLIAALGMAALESVESSRAKDEDDIALFVGSAHAVAADRPISRRR
Ga0207665_103220392	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	MLAVLIAALGMAALESVESTRAKDEDDIALFVGSAHALAVNRPISRRR
Ga0207667_121697522	3300025949	Corn Rhizosphere	FKMLAVVTAVLWMAAVESVQPRRAKDEDDVALFVGSAHALPAKRSQKRAQLG
Ga0209688_10729862	3300026305	Soil	MGLIKMLGVLVAVLVMAALESVRPGRANDEDDTALFVGSAHPLAAKPPSPRLPR
Ga0209806_11117031	3300026529	Soil	FLGCVGVLKILAVLIAALGMAAMESVRPTPAKDEDDVALFVGSAHALPINRRRR
Ga0209160_11549453	3300026532	Soil	VAILKMLAVLIAALGMAAVESVRPSPATDEDDIALFVGSAHPLAAKLPISRRRR
Ga0209058_10854692	3300026536	Soil	MLAVLIAALGMAAFESVRRDPAKDDDDVVLFVGSAHPLRANRPISRRRR
Ga0209157_11431972	3300026537	Soil	MLAVLIAALGMAAFESVRPTAAKDDDDVGLFVGSAHALPANPLSRRRR
Ga0209161_101884142	3300026548	Soil	AILKMLALLIAALGMAAVESVRPSPATDEDDVALFVGSAHPLRANPISRLRR
Ga0209220_11078362	3300027587	Forest Soil	FVAYVGVLKMLTVLLAALAMAAVESVRRSPETDEDQIALFVGSAHPLTTNPIGRRRH
Ga0209180_104188272	3300027846	Vadose Zone Soil	GVLKMLAVLIAALGMAAVESVRSNPATDEDDVALFVGSAHPLAAKPPLGRGRR
Ga0209283_104555501	3300027875	Vadose Zone Soil	VGVLKILAVLIAALGMAAVESVRPNPAKDADDVALFVGSAHPLLAKLPMSNRRRR
Ga0209590_105512231	3300027882	Vadose Zone Soil	MLAVLIAAVGMAMVESIRPMPVKDDDDVGLFVGSAHPLPAKLPVSRRRR
Ga0209488_108301062	3300027903	Vadose Zone Soil	VGVLKMLAVLIAALGMAALESVESSRAKDEDDIALFVGSARPLAAKLPISRRS
Ga0137415_100367582	3300028536	Vadose Zone Soil	VAILKLLALLTAALGMAALESVRPARAKDEDDDALFVGSAHALPISRRGR
Ga0137415_107530362	3300028536	Vadose Zone Soil	VGVLKVLAVLIAALGMAAMESVRPTPVKDEDDVALFVGSAHALPINRRRR
Ga0307280_100165322	3300028768	Soil	MPILKMLAVLIAALGMAAVESVRSTPAKDEDDVALFVGSAHPLAANRPITRRPR
Ga0307282_104632071	3300028784	Soil	LGMAAAESVRPARPNDDDDVALFVGSAHPLAAKRPISRRVR
Ga0307296_100098157	3300028819	Soil	VAILKMLAVLIAALGMAAAESVRPARPNDDDDVALFVGSAHPLAAKRPISPRVR
Ga0307310_107166312	3300028824	Soil	VGIVKMLAILIAVLWMAAVESVRPSRAKDEEDIVLFVGSAHPLAAKRPVSHRPR
Ga0307312_100971562	3300028828	Soil	MLAILIAALGMAAVESVRGTPAKDEDDVALFVGSAHPLAAKRPVSHRPR
Ga0307277_1000005722	3300028881	Soil	MGVFKMLVVLVAALGMAAVESARSAPAKDEDDVALFVGSAHALSAKRANSRRPR
Ga0307277_101326733	3300028881	Soil	MLAVLVVALGMAAVESVRPDPAIDEDDDALFVGSAHPLALRLPINRRRR
Ga0307308_100164946	3300028884	Soil	MPILKMLAVLIVALGMAAVESVRSTPAKDEDDVALFVGSAHPLAANRPITRRPR
Ga0307469_100493172	3300031720	Hardwood Forest Soil	VGVLKILAVLIAALGMAAVESVRAKPATDEDVALFVGSAHALSAKLPTNQRSR
Ga0307469_102437253	3300031720	Hardwood Forest Soil	VGILKMLAVLVVALGMAAVESVHPSPARDEDDDALFVGSAHALPAKRSQKRAQLG
Ga0307473_100043682	3300031820	Hardwood Forest Soil	LGILKMLAVLVVALGMAAVESVHPSPARDEDDDALFVGSAHALPAKRSQKRAQLG
Ga0307473_110007611	3300031820	Hardwood Forest Soil	MLAVLIAALGMAALESVESSRAKDEDDIALFVGSAHPLAAKLPISRHR
Ga0307471_1020938272	3300032180	Hardwood Forest Soil	PRACFLASVGVLKVLAVLVAALGMAAVESVRPSAATDEDDVALFVGSAHPLAAKASISRRRR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F072678

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences