Basic Information | |
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Family ID | F072661 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 121 |
Average Sequence Length | 39 residues |
Representative Sequence | MLRLLATLAFAASFDILLFDGKYISAVDKLAVAIIQHF |
Number of Associated Samples | 92 |
Number of Associated Scaffolds | 121 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Unclassified |
% of genes with valid RBS motifs | 53.72 % |
% of genes near scaffold ends (potentially truncated) | 31.40 % |
% of genes from short scaffolds (< 2000 bps) | 83.47 % |
Associated GOLD sequencing projects | 89 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.36 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Unclassified (52.066 % of family members) |
NCBI Taxonomy ID | N/A |
Taxonomy | N/A |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil (9.917 % of family members) |
Environment Ontology (ENVO) | Unclassified (27.273 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (47.934 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68 |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 48.48% β-sheet: 0.00% Coil/Unstructured: 51.52% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.36 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Soil Groundwater Sediment Watersheds Groundwater Sediment Soil Soil Terrestrial Soil Tropical Forest Soil Soil Agricultural Soil Soil Soil Forest Soil Soil Hardwood Forest Soil Soil Soil Natural And Restored Wetlands Tropical Peatland Tropical Forest Soil Forest Soil Corn, Switchgrass And Miscanthus Rhizosphere Corn Rhizosphere Peat Soil Arabidopsis Rhizosphere Corn Rhizosphere Switchgrass Rhizosphere Miscanthus Rhizosphere Arabidopsis Rhizosphere Switchgrass Rhizosphere Populus Endosphere Miscanthus Rhizosphere Populus Rhizosphere Miscanthus Rhizosphere Corn Rhizosphere Corn Rhizosphere Switchgrass Rhizosphere Miscanthus Rhizosphere Corn Rhizosphere Sugar Cane Bagasse Incubating Bioreactor |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
ICChiseqgaiiDRAFT_06216331 | 3300000033 | Soil | MLRLLATLAFAASFEIILFDGRYLHAADKVAVAIIRSF* |
ARcpr5oldR_0186382 | 3300000041 | Arabidopsis Rhizosphere | MLLRILATLAFAASFDILIMDGKYLSAVDKVAVAIFQXF* |
NODE_06350002 | 3300000156 | Sugar Cane Bagasse Incubating Bioreactor | VRAYALRMLLRILATLAFAASFDILIMDGKYIGAVDKIAVAILQSF* |
AF_2010_repII_A1DRAFT_100033615 | 3300000597 | Forest Soil | MLLRILAMLAFAWSLDGKYISAVDKVAVAIFQSF* |
AF_2010_repII_A1DRAFT_100600433 | 3300000597 | Forest Soil | MLRLLATLAFVASFDILLFGGSHITAADRLAVQIFQHF* |
Ga0066398_102219111 | 3300004268 | Tropical Forest Soil | MLRLLATLAFAASFDILLFDGKYITAVDRIAVQIIQHF*ARAPQSQSIG |
Ga0066395_108998031 | 3300004633 | Tropical Forest Soil | NRMLRLLATLAFAASFDILLFDGKYITAVDRIAVQIIQHF* |
Ga0062594_1002443882 | 3300005093 | Soil | MLLRILATLAFAASFDTLILDGKYISAVDKVAVTIFQSF* |
Ga0066821_10176671 | 3300005147 | Soil | MLLRILATLAFAASFDILIMDGKYLSAVDKVAVAIFQSF* |
Ga0066807_10129112 | 3300005161 | Soil | MLLRILATLAFAASFDILIMDGKYISAVDKVAVAIIQSF* |
Ga0066388_1048855791 | 3300005332 | Tropical Forest Soil | RMLRLLATLAFAASFDILLFDGKYITAVDRIAVQIIQHF* |
Ga0070682_1001678103 | 3300005337 | Corn Rhizosphere | TYDSRMLRLLATLAFAASFDILLFDGKYISAVHKLAVAIIQHF* |
Ga0070660_1007194241 | 3300005339 | Corn Rhizosphere | HMLLRILATLAFAASFDILIMDGKYLSAVDKVAVAIFQSF* |
Ga0070660_1009759681 | 3300005339 | Corn Rhizosphere | SRMLRLLATLAFAASFDILLFDGKYISAVGNIAVAIVQHF* |
Ga0070694_1019279101 | 3300005444 | Corn, Switchgrass And Miscanthus Rhizosphere | FETYDSRMLRLLATLAFAASFDILLFDGKYISAVHKLAVAIIQHF* |
Ga0070665_1008126634 | 3300005548 | Switchgrass Rhizosphere | MLRLLATLAFAASFDILLFDGKYISAVGNIAVAIVQHF* |
Ga0068864_1000994165 | 3300005618 | Switchgrass Rhizosphere | MLLRILATLAFAASFDILIMDGKYLSAVDKVAVAIFQS |
Ga0066905_1000021352 | 3300005713 | Tropical Forest Soil | MLRLLATLAFAASFDIILFDGRYLNAADKVAVAIIRSF* |
Ga0066905_1002971202 | 3300005713 | Tropical Forest Soil | MLLRILATLAFAASFDILILDGKYISAVDKVAAIFQSF* |
Ga0066905_1006850142 | 3300005713 | Tropical Forest Soil | MLCLLATLAFAASFDIILFDGRYITAVDKVAVAIFRSF* |
Ga0066905_1018784831 | 3300005713 | Tropical Forest Soil | MLRLLATLAFAASFDIVLFDGKYISAVDRVAVAIFRGF* |
Ga0068861_1026629631 | 3300005719 | Switchgrass Rhizosphere | MLRLLATLAFAASFDILLFDGKYISAVHKLAVAIIQHF* |
Ga0066903_1003580973 | 3300005764 | Tropical Forest Soil | LANLAFAASFDILLFDGKCISTVDKIAVQIIGHF* |
Ga0066903_1038569171 | 3300005764 | Tropical Forest Soil | MLLRILATLAFAASFDILGLDGKYISAVDKVAVAIFQSF* |
Ga0066903_1040701063 | 3300005764 | Tropical Forest Soil | MLRLLATLAFAASFDILLFDGKYITAVDRIAVQIIQHF* |
Ga0066903_1064599362 | 3300005764 | Tropical Forest Soil | MLRLLATLAFAASFDIVLFDGKYISAVDRVAVAIFRSF* |
Ga0068863_1014375291 | 3300005841 | Switchgrass Rhizosphere | LRILATLAFAASFDILIMDGKYLSAVDKVAVAIFQSF* |
Ga0075023_1002912472 | 3300006041 | Watersheds | MLRLLTTMAIAASFDILLFDGKYTDAAHQLAVIAIQHF* |
Ga0075023_1005836412 | 3300006041 | Watersheds | MLLRILATLAFAASFDILIMDGKYIGAVDKLAVAIFQSF* |
Ga0075026_1004744592 | 3300006057 | Watersheds | MLRLLATLAFAASFDILLFDGKYIGAVSKIAVAIIQHF* |
Ga0075026_1005415772 | 3300006057 | Watersheds | MLLRILATLAFAASFDILIMDGKYIGAVDKVAVAIIQSF* |
Ga0075026_1007816322 | 3300006057 | Watersheds | MLLRILATLAFAASFDILILDGKYISAGDKVAVAIFQSF* |
Ga0070716_1009550592 | 3300006173 | Corn, Switchgrass And Miscanthus Rhizosphere | MLRLLATLAFAASFDILLNDGKYISAVNKLAVAVIHHF* |
Ga0070712_1005579481 | 3300006175 | Corn, Switchgrass And Miscanthus Rhizosphere | RMLRLLATLAFAASFDILLFDGKYISAVGNIAVAIVQHF* |
Ga0070712_1018985202 | 3300006175 | Corn, Switchgrass And Miscanthus Rhizosphere | RILATLAFAASFDILIMDGKYLSAVDKVAVAIFQSF* |
Ga0075367_108847722 | 3300006178 | Populus Endosphere | AAHMLLRILATLAFAASFDILIMDGKYLSAVDKVAVAIFQSF* |
Ga0097621_1008565231 | 3300006237 | Miscanthus Rhizosphere | IFETYDSRMLRLLATLAFAASFDILLFDGKYISAVHKLAVAIIQHF* |
Ga0074048_123471001 | 3300006581 | Soil | MLRLLATLAFAASFDILIMDGKYISAVDKVAVAIIQSF* |
Ga0079220_120957812 | 3300006806 | Agricultural Soil | MLRLLATLAFAASFDILLFDGKYITAVDRIAAQIIQ |
Ga0075428_1006635301 | 3300006844 | Populus Rhizosphere | YTARMLRLLATLAFAASFEIILFDGRYLHAADKVAVAIIRSF* |
Ga0075435_1007125621 | 3300007076 | Populus Rhizosphere | YASHMLLRILATLAFAASFDILIMDGKYLSAVDKVAVAIFQSF* |
Ga0105240_103427453 | 3300009093 | Corn Rhizosphere | MLRLLATLAFAASFDILLFDGKYISAVANIAVAIVQHF* |
Ga0105243_105336131 | 3300009148 | Miscanthus Rhizosphere | MLLRILATLAFAASFDTLILDGKYISAVHKLAVAIIQHF* |
Ga0126380_102226592 | 3300010043 | Tropical Forest Soil | MQRFLATLAFAAAFDILILDGKYVSAVNHVALTFFRGF* |
Ga0126380_105295182 | 3300010043 | Tropical Forest Soil | MLLRILATLAFAASFDILIMDGKYIGAVDKIAVAILQSF* |
Ga0126380_109516722 | 3300010043 | Tropical Forest Soil | MLLRILATLAFAASFDILIMDGKYISAVDKVAVAIFQSF* |
Ga0126380_114568562 | 3300010043 | Tropical Forest Soil | MLRLLATLAFAASFDIILFDGRYITAVDKVAVAIYRSF* |
Ga0126384_100642091 | 3300010046 | Tropical Forest Soil | MQRFLATLAFAAAFDILFLDGKYLSAVNQVALVYFRGF* |
Ga0126384_116729102 | 3300010046 | Tropical Forest Soil | MLLRILAMLTFAWSLDGKYISAVDKVAVAIFQSF* |
Ga0126382_104673752 | 3300010047 | Tropical Forest Soil | MLRLLATLAFAVGFDILLSDGKFTDAAHRVAVAAIQNL* |
Ga0126376_104585182 | 3300010359 | Tropical Forest Soil | MLLRILATLAIAASFDILILDGKYISAVDKVALAIFQSF* |
Ga0126376_128329761 | 3300010359 | Tropical Forest Soil | MLRLLATLAFAAGFDILLSDGKFTDAAYRVAVAAIQNL* |
Ga0126372_102626123 | 3300010360 | Tropical Forest Soil | MLRLLATLAFAASFDILLCDGKYITAVDRIAVQIIQHF* |
Ga0126379_114117632 | 3300010366 | Tropical Forest Soil | MLRLLATPAFAASFDILLFDGKCTSTVDKIAVQIIGHF* |
Ga0105239_105823243 | 3300010375 | Corn Rhizosphere | DSRMLRLLATLAFAASFDILLFDGKYISAVHKLAVAIIQHF* |
Ga0134126_101758383 | 3300010396 | Terrestrial Soil | MLRLLATLAVAASFDILLFDGKYISAVHKLAVAIIQHF* |
Ga0134124_114401143 | 3300010397 | Terrestrial Soil | FETYDSRMLRLLATLAFAASFDILLFDGKYISAVGNIAVAIVQHF* |
Ga0134121_100349161 | 3300010401 | Terrestrial Soil | MLLRILATLAFAASFDILIMDGKYLSAVDKVAVAIF |
Ga0134121_102318331 | 3300010401 | Terrestrial Soil | TYDSRMLRLLATLAFAASFDILLFDGKYISAVGNIAVAIVQHF* |
Ga0150983_107180673 | 3300011120 | Forest Soil | MPRLLATLAFAASFDILLFDGKYIGAVNKIAVAIIQHF* |
Ga0137463_11867692 | 3300011444 | Soil | MLRLLATLAFAVSFDILLFDGKYVNAVEHIALAVVQKF* |
Ga0157346_10083342 | 3300012480 | Arabidopsis Rhizosphere | MLLRILATLAFAASFDSLIMDGKYLSAVDKVAVAIFQSF* |
Ga0157337_10246712 | 3300012483 | Arabidopsis Rhizosphere | LATLAFAASFDILIMDGKYLSAVDKVAVAIFQSF* |
Ga0157343_10021442 | 3300012488 | Arabidopsis Rhizosphere | MLLCILATLAFAASFDILIMDGKYLSAVDKVAVAIFQSF* |
Ga0164300_102550273 | 3300012951 | Soil | IIAVQESTSLIFETYDSRMLRLLATLAFAASFDILLFDGKYISAVGNIAVAIVQHF* |
Ga0164303_100851925 | 3300012957 | Soil | MLRLLATLGFAVSFDILLFDGKYVNAVEHIALAVVQKF* |
Ga0164299_105463461 | 3300012958 | Soil | MLRLLATLAFAASFDILLFDGKYITAVDKIAVALIQHF* |
Ga0164309_102175844 | 3300012984 | Soil | ETYDSRMLRLLATLAFAASFDILLFDGRYISAVANIAVAIVQHF* |
Ga0164308_103823893 | 3300012985 | Soil | MLRLLATLAFAASFDILLFDGKYISAVHILAVAIIQHF* |
Ga0164307_112917962 | 3300012987 | Soil | MLRLLATLAFAASFDILLNDGKYISAVNKLAVAIIQHF* |
Ga0164306_114398141 | 3300012988 | Soil | IFETYDSRMLRLLATLAFAASFDILLFDGKYISAVANIAVAIVQHF* |
Ga0157369_103148404 | 3300013105 | Corn Rhizosphere | MLRLLATLAFAASFDILLFDCKYISAVHKLAVAIIQHF* |
Ga0075352_12722263 | 3300014324 | Natural And Restored Wetlands | LLATLAFAASFDIILFDGKYISAVDKVAVAIIRNF* |
Ga0132258_114599651 | 3300015371 | Arabidopsis Rhizosphere | MLRLLATLAFVASFDILLFDGKYITVVNKIAVQIIQHF* |
Ga0132258_121973413 | 3300015371 | Arabidopsis Rhizosphere | MLRLLATLAFAASFDILLFDGKYIGAVNKIAVAIIQHF* |
Ga0132258_134841672 | 3300015371 | Arabidopsis Rhizosphere | MLLRILATLAFAASFDTLILDGKYISAVDKVAVAIFQSF* |
Ga0132255_1003473271 | 3300015374 | Arabidopsis Rhizosphere | AVQESTSLIFETYDSRMLRLLATLAFAASFDILLFDGKYISAVHKLAVAIIQHF* |
Ga0163161_117983332 | 3300017792 | Switchgrass Rhizosphere | MLLRILATLAFAASFDTLILDGKYISAVDKVAVTIFQSF |
Ga0187786_100316234 | 3300017944 | Tropical Peatland | MMRLLLATLAFAVSFDVLLFDGKYTDAVHRIAVIAIQHF |
Ga0187786_100449571 | 3300017944 | Tropical Peatland | MQRFLATLAFAAAFDILFLDGKYISAVDHVALAFFRGF |
Ga0187786_103117042 | 3300017944 | Tropical Peatland | VGAYAPRMLLRILATLAFAASFDILIMDGKYIGAVDKIAVAILQSF |
Ga0187785_1000075612 | 3300017947 | Tropical Peatland | MLRLLLATLVFAVSFDVLLFDGKYTDAVHQIAVVAVQHF |
Ga0187785_100062735 | 3300017947 | Tropical Peatland | MLLRILATLAFAASFDILIMDGKYISAVDKVAVAIFQSF |
Ga0187785_100159382 | 3300017947 | Tropical Peatland | MQRFLATLAFAAAFDILFLDGKYISAVDRAALAFFRGF |
Ga0187785_100352543 | 3300017947 | Tropical Peatland | MLRLLSTTLAFVVSFDVLLFDGEYTDAVHQIAVVAIQHF |
Ga0187777_101577782 | 3300017974 | Tropical Peatland | MLRLLATLAFAASFDILLFDGKYITAVDRIAVQIIQHF |
Ga0184608_104705842 | 3300018028 | Groundwater Sediment | MLRFLAFAASFDILLLEGKYISAVDKVAVAIVRSF |
Ga0184621_101416982 | 3300018054 | Groundwater Sediment | MLRLLATLAFAASFDIILFDGKYISAVDKVAVAIVR |
Ga0187773_101647634 | 3300018064 | Tropical Peatland | MPRLSATPTFAASFDILLFDGKYISAVDKVAVAVIRSF |
Ga0184635_100335071 | 3300018072 | Groundwater Sediment | MLRILATLAFAASFDIILFDGKYISAVDKVAVAIVRSF |
Ga0210402_107692802 | 3300021478 | Soil | MLRLLATLAFAASFDILLCDGKYISAVNKLAVAIIQHF |
Ga0126371_132810301 | 3300021560 | Tropical Forest Soil | MLRLLATLAFAASFDILLFDGKYITAVDRIAVQIIQHFCARSPQS |
Ga0222729_10275141 | 3300022507 | Soil | MPRLLATLAFAASFDILLFDGKYIGAVNKIAVAIIQHF |
Ga0242662_100829033 | 3300022533 | Soil | MLRLLATLAFAASFDILLFDGKYIGAVNKIAVAIIQHF |
Ga0242662_101313373 | 3300022533 | Soil | MLRLLATLAFAASFDILLFDGKYICAGDKIAVALIQHF |
Ga0222623_100170262 | 3300022694 | Groundwater Sediment | MLRLLATLAFAASFDIILFDGKYISAVDKVAVAIVRSF |
Ga0222622_1001022310 | 3300022756 | Groundwater Sediment | MLRFLVTLAFAASFDILLLEGKYISAVDKVAVAIVRSF |
Ga0207682_104526372 | 3300025893 | Miscanthus Rhizosphere | MLRLLATLAFAASFDILLFDGKYISAVHKLAVAIIQHF |
Ga0207693_100097371 | 3300025915 | Corn, Switchgrass And Miscanthus Rhizosphere | HMLLRILATLAFAASFDILIMDGKYLSAVDKVAVAIFQSF |
Ga0207693_104700834 | 3300025915 | Corn, Switchgrass And Miscanthus Rhizosphere | MLRLLATLAFAASFDILLFDGKYISAVANIAVAIVQHF |
Ga0207689_100433806 | 3300025942 | Miscanthus Rhizosphere | MLLRILATLAFAASFDILIMDGKYLSAVDKVAVAIFQSV |
Ga0207640_105731343 | 3300025981 | Corn Rhizosphere | NSRMLRLLATLAFAASFDILLFDGKYISAVGNIAVAIVQHF |
Ga0208890_10859511 | 3300027523 | Soil | MLRLLTTMAIAASFDILLFDGKYTDAAHQLAVIAIQ |
Ga0209068_108663092 | 3300027894 | Watersheds | MLRLLATLAFAASFDILLFDGKYISAVDKLAVAIIQHF |
Ga0209583_107401702 | 3300027910 | Watersheds | MLLRILATLAFAASFDILIMDGKYIGAVDKLAVAIFQSF |
Ga0075373_101839661 | 3300030945 | Soil | MLRLLATLAFAASFDILLFDGKYIGAVSKIAVAIIQHF |
Ga0170824_11973189511 | 3300031231 | Forest Soil | MLRFLVTLAFAASFDILLLEGKYISAVDKVAVAIVRSY |
Ga0307505_105657551 | 3300031455 | Soil | MLRLLATLAFAASFDILFFDGKYIGAVSKIAVAIIQHF |
Ga0310888_100422901 | 3300031538 | Soil | EHIVGDYASHMLLRILATLAFAASFDILIMDGKYLSAVDKVAVAIFQSF |
Ga0307469_111115941 | 3300031720 | Hardwood Forest Soil | MLRLLATLAFAASFDILLNDGKYISAVNKLAVAIIQHF |
Ga0306918_110231991 | 3300031744 | Soil | MLRLLATPAFAASFDILLFDGISTVDKIAVQIIGNF |
Ga0310899_100420992 | 3300032017 | Soil | MLLCILATLAFAASFDILIMDGKYLSAVDKVAVAIFQSF |
Ga0310890_111893132 | 3300032075 | Soil | MLLRILATLAFAASFDILIMDGKYLSAVDKVAVAI |
Ga0307470_103786732 | 3300032174 | Hardwood Forest Soil | MLRLLATLAFAASFDILLNDGKYISAVNKLAVAII |
Ga0307471_1016940911 | 3300032180 | Hardwood Forest Soil | MLRLLATLAFAASFDVLLNDGKYISAVNKLAVAIIQHF |
Ga0335084_111829752 | 3300033004 | Soil | MLLRILATLAFAASFDILIMDGKYIGAVDKIAVAILQSF |
Ga0310810_102339521 | 3300033412 | Soil | ITKIYDEIMLRLLATLGFAVSFDILLFDGKYVNAVEHIALAVVQKF |
Ga0326726_100168997 | 3300033433 | Peat Soil | MLRLLITMAIAASFDILLFDGKYADAAHQLAVIAIQHF |
Ga0326726_119445572 | 3300033433 | Peat Soil | MFRLLATLAFVVGSDILLFDGKYTDAAHQLAVIAIQHL |
Ga0326723_0230089_595_711 | 3300034090 | Peat Soil | MLRLLTTMAIAASFDILLFDGKYTDAAHQLAVIALQHF |
Ga0326723_0282272_299_415 | 3300034090 | Peat Soil | MLRLSATLAFAASFDILLFDGKNISAVDKVAVAIIRSF |
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