Metagenome Family F072455

Overview

Basic Information

• Family ID: F072455
• Family Type: Metagenome
• Number of Sequences: 121
• Average Sequence Length: 44 residues
• Representative Sequence: MPRLELFPFRYRDRLTGKWVKARYVAERHEIAARYAEWEIIGSPE
• Number of Associated Samples: 100
• Number of Associated Scaffolds: 121

Quality Assessment

• Transcriptomic Evidence: No
• Most common taxonomic group: Unclassified
• % of genes with valid RBS motifs: 28.95 %
• % of genes near scaffold ends (potentially truncated): 78.51 %
• % of genes from short scaffolds (< 2000 bps): 87.60 %
• Associated GOLD sequencing projects: 83
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.46

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Unclassified (52.066 % of family members)
• NCBI Taxonomy ID: N/A
• Taxonomy: N/A

Most Common Ecosystem

• GOLD Ecosystem: Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere (15.703 % of family members)
• Environment Ontology (ENVO): Unclassified (60.331 % of family members)
• Earth Microbiome Project Ontology (EMPO): Host-associated → Plant → Plant rhizosphere (73.554 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 9.59%
  β-sheet: 23.29%
  Coil/Unstructured: 67.12%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 121 Family Scaffolds
PF00072	Response_reg	4.96
PF13650	Asp_protease_2	4.13
PF04392	ABC_sub_bind	2.48
PF13975	gag-asp_proteas	2.48
PF00413	Peptidase_M10	2.48
PF00583	Acetyltransf_1	1.65
PF00486	Trans_reg_C	1.65
PF13683	rve_3	1.65
PF07589	PEP-CTERM	0.83
PF06114	Peptidase_M78	0.83

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 121 Family Scaffolds
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	2.48
COG5549	Predicted Zn-dependent protease	Posttranslational modification, protein turnover, chaperones [O]	2.48
COG0688	Phosphatidylserine decarboxylase	Lipid transport and metabolism [I]	0.83
COG1273	Non-homologous end joining protein Ku, dsDNA break repair	Replication, recombination and repair [L]	0.83
COG1423	ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family	Replication, recombination and repair [L]	0.83
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	0.83
COG1804	Crotonobetainyl-CoA:carnitine CoA-transferase CaiB and related acyl-CoA transferases	Lipid transport and metabolism [I]	0.83
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	0.83
COG2132	Multicopper oxidase with three cupredoxin domains (includes cell division protein FtsP and spore coat protein CotA)	Cell cycle control, cell division, chromosome partitioning [D]	0.83
COG2366	Acyl-homoserine lactone (AHL) acylase PvdQ	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.83

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	47.93 %
Unclassified	root	N/A	52.07 %

Level 2

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	47.93 %
Unclassified	root	N/A	52.07 %

Level 3

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	47.93 %
Unclassified	root	N/A	52.07 %

Level 4

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.83 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	33.88 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	2.48 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.65 %
Unclassified	root	N/A	52.07 %

Level 5

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.83 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	18.18 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	0.83 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	4.13 %
Unclassified	root	N/A	52.07 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.83 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2.48 %

Level 6

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.83 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.83 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	4.96 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.83 %
Methylococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales	1.65 %
Nevskiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales	1.65 %
Unclassified	root	N/A	52.07 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	9.09 %
Verrucomicrobiae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae	2.48 %

Level 7

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.83 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.83 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	9.09 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	0.83 %
Methylococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	1.65 %
Pseudanabaenales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Pseudanabaenales	0.83 %
Sinobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae	1.65 %
Unclassified	root	N/A	52.07 %
Verrucomicrobiales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	2.48 %

Level 8

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.83 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.83 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	9.09 %
Hydrocarboniphaga	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Hydrocarboniphaga	1.65 %
Leptolyngbyaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Pseudanabaenales → Leptolyngbyaceae	0.83 %
Ramlibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter	0.83 %
Unclassified	root	N/A	52.07 %
unclassified Methylococcaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → unclassified Methylococcaceae	1.65 %
unclassified Verrucomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales	2.48 %

Level 9

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.83 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.83 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	9.09 %
Hydrocarboniphaga effusa	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Hydrocarboniphaga → Hydrocarboniphaga effusa	1.65 %
Leptolyngbya	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Pseudanabaenales → Leptolyngbyaceae → Leptolyngbya	0.83 %
Methylococcaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → unclassified Methylococcaceae → Methylococcaceae bacterium	1.65 %
Unclassified	root	N/A	52.07 %
unclassified Ramlibacter	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter → unclassified Ramlibacter	0.83 %
Verrucomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium	2.48 %

Level 10

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.83 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.83 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	9.09 %
Hydrocarboniphaga effusa	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Hydrocarboniphaga → Hydrocarboniphaga effusa	1.65 %
Methylococcaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → unclassified Methylococcaceae → Methylococcaceae bacterium	1.65 %
Ramlibacter sp. USB13	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter → unclassified Ramlibacter → Ramlibacter sp. USB13	0.83 %
Unclassified	root	N/A	52.07 %
unclassified Leptolyngbya	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Pseudanabaenales → Leptolyngbyaceae → Leptolyngbya → unclassified Leptolyngbya	0.83 %
Verrucomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium	2.48 %

Level 11

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.83 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.83 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	9.09 %
Hydrocarboniphaga effusa	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Hydrocarboniphaga → Hydrocarboniphaga effusa	1.65 %
Leptolyngbya sp. FACHB-321	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Pseudanabaenales → Leptolyngbyaceae → Leptolyngbya → unclassified Leptolyngbya → Leptolyngbya sp. FACHB-321	0.83 %
Methylococcaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → unclassified Methylococcaceae → Methylococcaceae bacterium	1.65 %
Ramlibacter sp. USB13	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter → unclassified Ramlibacter → Ramlibacter sp. USB13	0.83 %
Unclassified	root	N/A	52.07 %
Verrucomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium	2.48 %

Associated Scaffolds

Scaffold	Taxonomy	Length
2162886012|MBSR1b_contig_1993759	Not Available	1537
2162886012|MBSR1b_contig_3273780	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium	1334
3300003319|soilL2_10292059	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Pseudanabaenales → Leptolyngbyaceae → Leptolyngbya → unclassified Leptolyngbya → Leptolyngbya sp. FACHB-321	1133
3300004157|Ga0062590_100348581	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium	1183
3300005295|Ga0065707_11113249	Not Available	513
3300005328|Ga0070676_10157957	Not Available	1457
3300005328|Ga0070676_10239417	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1206
3300005330|Ga0070690_101305683	All Organisms → cellular organisms → Bacteria → Proteobacteria	581
3300005331|Ga0070670_100061652	All Organisms → cellular organisms → Bacteria	3219
3300005331|Ga0070670_100091808	All Organisms → cellular organisms → Bacteria	2611

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	36.36%
Host-Associated	Host-Associated	63.64%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	5.79%
Plants	Host-Associated → Plants	63.64%
Terrestrial	Environmental → Terrestrial	30.58%

Category

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	4.96%
Marine	Environmental → Aquatic → Marine	0.83%
Rhizoplane	Host-Associated → Plants → Rhizoplane	20.66%
Rhizosphere	Host-Associated → Plants → Rhizosphere	38.84%
Roots	Host-Associated → Plants → Roots	4.13%
Soil	Environmental → Terrestrial → Soil	30.58%

Type

Habitat	Taxonomy	Distribution
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	17.36%
Lentic	Environmental → Aquatic → Freshwater → Lentic	0.83%
Loam	Environmental → Terrestrial → Soil → Loam	7.44%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	4.13%
Sediment	Environmental → Aquatic → Freshwater → Sediment	2.48%
Soil	Host-Associated → Plants → Rhizosphere → Soil	28.93%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	19.01%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	9.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	3.31%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	4.13%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.65%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.83%

Subtype

Habitat	Taxonomy	Distribution
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.65%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.61%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	9.09%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.65%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.83%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	0.83%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.83%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	4.13%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	28.93%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	17.36%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	9.92%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	6.61%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	4.13%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	3.31%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	2.48%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.83%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.83%

Habitat

Habitat	Taxonomy	Distribution
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.65%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	4.13%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	2.48%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.65%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.83%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	1.65%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.65%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	1.65%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	0.83%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	2.48%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.83%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	0.83%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.31%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	8.26%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	5.79%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	1.65%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.65%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.83%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.83%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.13%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.48%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.83%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.83%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	0.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	15.70%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	7.44%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	4.13%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	3.31%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	3.31%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.83%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.48%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.83%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.65%

Associated Samples

Taxon OID	Sample Name	Habitat Type
2162886012	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental
3300003319	Sugarcane bulk soil Sample L2	Environmental
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated
3300005333	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG	Host-Associated
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
MBSR1b_0778.00000830	2162886012	Miscanthus Rhizosphere	MPLELFLFPFRYRDPLTGKWVRARYVAERHEIAARYNEWEIIGAPEI
MBSR1b_0631.00000100	2162886012	Miscanthus Rhizosphere	MPRLELFPFRYRDRLTGKWVKARYVAERHEIAARY
F14TB_1029822331	3300001431	Soil	MPAPLFPFRYRDARTGKWVRARYVATRDDIAARYAEW
soilL2_102920592	3300003319	Sugarcane Root And Bulk Soil	MPRLELFPFRYRNPTTGKWIRARYVAERHEIAARDAPGDWDIIGPP*
Ga0062590_1003485811	3300004157	Soil	MPRLELFPFRYRDRLTGKWVKARYVAERHEIAARYAEWEII
Ga0065707_111132491	3300005295	Switchgrass Rhizosphere	MTPRLGLLHFRYRDARTGKWIRARYRADRDEIAARHAEWE
Ga0070676_101579571	3300005328	Miscanthus Rhizosphere	MPRLEFFPLRCWDRLTGKSVKARYVERHEIAARCAEWEIIGSV*
Ga0070676_102394172	3300005328	Miscanthus Rhizosphere	MPRLELFSFRYRDPLTGKWVKARCVAERHEISARYAEWQMVGRPGICRIV*
Ga0070690_1013056832	3300005330	Switchgrass Rhizosphere	MPRLELFPFRYRAPLTGKRVKARYVAERHEIAARYAEWDR
Ga0070670_1000616526	3300005331	Switchgrass Rhizosphere	MPRIELFPFRYRDRVTGRWETRYVAEGHEIAARYSEWETSH*
Ga0070670_1000918085	3300005331	Switchgrass Rhizosphere	MPRLELFPFRYRDGLTGQWVRARYHAERHEISKRYADTDWEISG
Ga0070677_106136411	3300005333	Miscanthus Rhizosphere	MPRLELFSFRYRDRLTGKWVRARYVAERHAIAARYTEWKIIGPREIRDV
Ga0068869_1001607771	3300005334	Miscanthus Rhizosphere	MPRLELFPFRYRDRLTGKWVKARYVAERHEIAARYAEWEIIGSPEIRD
Ga0070666_115223222	3300005335	Switchgrass Rhizosphere	MPRLELFPFRYRESFTGKWVKARYRAERHEIAARYNEWEIIGPPEIRDVDP
Ga0070689_1010073602	3300005340	Switchgrass Rhizosphere	MPKELFPFRYRDELTGKWVRARYLAERHEIAAAYKEWEIAGPPEIR
Ga0070687_1003209533	3300005343	Switchgrass Rhizosphere	RLELFAFHYRNSLTGKWVKARYVAAPHKIAARYAEWESLDRPRS*
Ga0070668_1008467851	3300005347	Switchgrass Rhizosphere	MPRLELFPLRYRDRVTGEWVKARYVAERHEIAARCSKSQMVGRPGICRIV*
Ga0070668_1010768642	3300005347	Switchgrass Rhizosphere	MPRLQLFPFRYRDDVTGKWVKARYVAEPQEIAARYSEWEIIGPPEIRDVD
Ga0070668_1020368161	3300005347	Switchgrass Rhizosphere	VPAARLELFPFRYRDRVTGKWVKARHVAERHDIAARYAEWEIIGPPEI
Ga0070675_1005438933	3300005354	Miscanthus Rhizosphere	ASFFMPRLEFFPLRCWDRLTGKSVKARYVERHEIAARCAEWEIIGSV*
Ga0070671_1002084912	3300005355	Switchgrass Rhizosphere	MPRLELFPFRYRDRVTGRWVKARYVAEGHESAARYSEWETSR*
Ga0070674_1004928902	3300005356	Miscanthus Rhizosphere	MPKELFPFRYRDELTGKWVRASYLAERHEIAERYKEWEITGS
Ga0070674_1008790891	3300005356	Miscanthus Rhizosphere	VHRLELFPFRYRDPRTGKWVRARYRAERQEIAARYAEYEIVGQAEIRE
Ga0070673_1017989021	3300005364	Switchgrass Rhizosphere	RLELFPFRYRDRVTGKWVKARYVAERHEIAARHSEWEIVGPPEIRDVVTCPLR*
Ga0070667_1020487872	3300005367	Switchgrass Rhizosphere	MPRLELFPFRYRDCLTGKWVKARYIAEREIAASHSEWEIIGPREIRDV
Ga0070701_107793022	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	MSRIELFPFRFRDRITGKWVRARYRAERDEIARRYPEYEITGPP
Ga0070663_1015610002	3300005455	Corn Rhizosphere	MPRLELFPFRYREPFTGKWVKARYRAELHEIVARYKEWEIIGPPEIREV
Ga0068867_1006323603	3300005459	Miscanthus Rhizosphere	MGRVELFPFRFRDPVTGKWTRARYKAERHEIAERYADYEIIG
Ga0068867_1019947892	3300005459	Miscanthus Rhizosphere	MPRLELFPFRYRDRLTGKWVRARYVAERQEIARRYAEWEIIGPPVGR*
Ga0070679_1009100543	3300005530	Corn Rhizosphere	MGRLVLYPFRYRDETTGKWVKARYVAELKDIEARHAQWEPTGPPEVREL
Ga0068853_1012620852	3300005539	Corn Rhizosphere	LRADRGIVCTMPRLELFSFRYRDPLTGKWVKARCVAERHEISARYAEWQMVGRPGICRIV
Ga0070693_1011269072	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	VPRLELFRFRYRNVVTGQWVRARYVAERHEIATRHKEWKIVGPPEIR
Ga0070665_1004149531	3300005548	Switchgrass Rhizosphere	MPRIELFPFRYRDRVTGRWETRYVAEGHESAARYSEWET
Ga0070664_1000372943	3300005564	Corn Rhizosphere	MPRLELFPFRYHDRITGKWVKARYVAERHEIAARYSE*
Ga0068852_1008245541	3300005616	Corn Rhizosphere	MPRLQLFPFRYRDDVTGKWVKARYVAEPQEIAARYSE
Ga0068852_1013508521	3300005616	Corn Rhizosphere	MPRLELFPFRYRDPVTRKWVRARYVAERHESPTRYSEWETLI*
Ga0068859_1024161142	3300005617	Switchgrass Rhizosphere	MPRLELFPFATTTGSGKWVKALYVAETHEIAARYTEWE
Ga0068864_1026811241	3300005618	Switchgrass Rhizosphere	MPIKELFPFRYRDPVTGKWVSARYVAERHEIAERYKEWEIAGPPECEPVLRG*
Ga0068858_1012597841	3300005842	Switchgrass Rhizosphere	MARLELFPFRYRDHLSGKWVKARYVAERQEIVARYADWEIIGPPEIRD
Ga0068862_1012055551	3300005844	Switchgrass Rhizosphere	PRLELFRFRYRDRVTGKWVGTYVAERHEIVARYAEWEMVGRPGICRIV*
Ga0068862_1024341501	3300005844	Switchgrass Rhizosphere	MPRLELFSFRYRDPLTGKWVKARCVAERHEISARYAEWQMV
Ga0097621_1015751672	3300006237	Miscanthus Rhizosphere	FRYRGRITGKWVRARYVADRHEIAARYAEWGFLRPPTLRAPS*
Ga0075434_1015471002	3300006871	Populus Rhizosphere	MPRPELFPFRYRSPVTGKWVRARYLAEWLEIIERYVEWEIIGPPEIRYADPASES
Ga0068865_1018789262	3300006881	Miscanthus Rhizosphere	MPRLELFPFRYREPFTGKWVKARYRAERHEIAARYKEWEIIGPPEIR
Ga0105103_101632551	3300009085	Freshwater Sediment	MTSTIEAFPFRYRDARTGRWVKARNKAERDDIAARYAEWE
Ga0105245_116904302	3300009098	Miscanthus Rhizosphere	MAPRLELFPFRYRDPRTGKWIRARYRADRQEIASRY
Ga0111538_124649911	3300009156	Populus Rhizosphere	MAIELFPFRYRDPLTGKWVKARYLAERHEIAARYAEWEITGAPE
Ga0113563_115077392	3300009167	Freshwater Wetlands	MARLELYPFRDPLAGKWDRARYVAERHEIAARSAE*
Ga0105248_110327951	3300009177	Switchgrass Rhizosphere	MPRIELFPFRYRDRVTGRWVKTRYVAERHEIAARYPEIEIVGPA
Ga0105248_113402313	3300009177	Switchgrass Rhizosphere	MPRLELFPFRYRDPPTGKWVKARYVAERHEIAERNTDWEI
Ga0105248_118981171	3300009177	Switchgrass Rhizosphere	MPRIELFPFRYRDRVTGKWVKARYVAERHEIAARHSEWEIVGPPEI
Ga0105249_110028182	3300009553	Switchgrass Rhizosphere	VPRLELFPVRYRNPVTGKWVRARYVATREEIAKANAEWEIIGPPETREVD
Ga0105249_121941862	3300009553	Switchgrass Rhizosphere	MPRLELFPFATTTGSGKWVKALYVAETHEIAARYTEWEIIGRPEIRDVDP
Ga0126374_113882531	3300009792	Tropical Forest Soil	MALTLYPFRYRDQRTGKWHQARYLAELHEISARYAEWEIIGPPEVRPDQDGGHFT
Ga0134126_102175995	3300010396	Terrestrial Soil	MRRLLLYPFRYRDEATGKWVKARYVAEWHDIEARHAQWEP
Ga0134122_128231922	3300010400	Terrestrial Soil	MSRIELFPFRFRDRITGKWVRARYRAERDEIARRYPEYEITGPPE
Ga0134123_118664891	3300010403	Terrestrial Soil	MFKALFPFRYRDEVTGQWVPARYLAERREIGAARTHA*
Ga0164301_112623182	3300012960	Soil	MGRLVLYPFRYRDETTGKWVKARYVAELKDIEARHAQWE
Ga0164307_114244782	3300012987	Soil	MPRLELFPFRYRESFTGKWVKARYRAERHEIAARYN
Ga0157374_107440432	3300013296	Miscanthus Rhizosphere	MRRLLLYPFRYRDEATGKWVKARYVAEWHDIEARHAQWEPTGPP
Ga0157372_109521573	3300013307	Corn Rhizosphere	MGRLVLYPFRYRDETTGKWVKARYVAELKDIEARHAQWEPTG
Ga0163163_118542241	3300014325	Switchgrass Rhizosphere	MKLFPFRYRDPLTDKWVRARYKAELHEIADRYREW
Ga0163163_119950451	3300014325	Switchgrass Rhizosphere	MPRIELFPFRYRDPVTRKWVRARYVAERHESPTRYSEWETSHLS
Ga0163163_125247251	3300014325	Switchgrass Rhizosphere	MPRLELFPFRYRDRLTGKWVRARYVAERHEIAARYAAWEIIGPPEIRDV
Ga0163163_125497722	3300014325	Switchgrass Rhizosphere	MPRVELFAFHYRDPRTGRWIRARYRAERHEIASRHAEFEIIGAPE
Ga0157377_101980081	3300014745	Miscanthus Rhizosphere	MPRLELFPFRYRDRVTGKWLKARYVAERHEVAARCSKSQMVGRPGICRIV*
Ga0157379_116629042	3300014968	Switchgrass Rhizosphere	MPRLELFPFRYREPFTGKWAKARYRAERHEIAARYQEWEITGPPEIGDVDP
Ga0132258_130755662	3300015371	Arabidopsis Rhizosphere	VRIELFPFRFRDPVTGKWVRARYHPEPHEIATRYVEWEITGPAEVHDS*
Ga0132256_1022370652	3300015372	Arabidopsis Rhizosphere	MPRLELFPFRYRDRLTGKWVKARYFAERHEIAARYSEWEIVGPP
Ga0132255_1038236232	3300015374	Arabidopsis Rhizosphere	MPRLELFPFATTTGSGKWVKALYVAETHEIAARYTEWEIIGR
Ga0187824_102767101	3300017927	Freshwater Sediment	MGRMRRLLLYPFCYRDETTGKWVKARYVAELHEIEAR
Ga0187785_103270241	3300017947	Tropical Peatland	MPRGFFQFRYRDPLTGKMVKARYRAERHEITARYAEWELIEPPERSRGR
Ga0187779_110461191	3300017959	Tropical Peatland	MPRELFPFRFRDSVTGKWVRARYVTEHHEIAARYKEWEIAGAPEIR
Ga0190270_134618592	3300018469	Soil	MAPRIEPFNFRYRDPRTGKWIRARYRAERHEIAARYAEGEITGPAEV
Ga0207682_104896672	3300025893	Miscanthus Rhizosphere	MPLELFLFPFRYRDPLTGKWVRARYVAERHEIAARYNEWEIIGAPEIRQGG
Ga0207688_101586322	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	PRAAGPFRYHDRITGKWVKARYVAERHEIAARYSE
Ga0207688_103221383	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	MPRLQLFPFRYRDRVTGKWAKARYVAEPQEIAARYERVGD
Ga0207645_101460951	3300025907	Miscanthus Rhizosphere	IAASFFMPRLEFFPLRCWDRLTGKSVKARYVERHEIAARCAEWEIIGSV
Ga0207657_113436111	3300025919	Corn Rhizosphere	MPRLELFPFRYRDRLTGKWVEARYVAERHEIAARYAEWEIIGSPEIRRYRTRS
Ga0207652_101585101	3300025921	Corn Rhizosphere	MRRLLLYPFRYRDEATGKWVKARYVAEWHDIEARHAQWEPT
Ga0207681_104917092	3300025923	Switchgrass Rhizosphere	MPRLELFPFRYHDRITGKWVKARYVAERHEIAARYSE
Ga0207650_102324706	3300025925	Switchgrass Rhizosphere	MPRLEQFPFRYRDRVTGKWVRARYVAERHEIAARYAEWEIIGPPEIRDVD
Ga0207701_110471882	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	MPRLELFPFRYRDRVTGKCVKARYVAERHEIAARYTEWEIIGPPEI
Ga0207701_115734011	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	MPKELFPFRYRDELTGKWVRASYLAERHEIAERYKEWEI
Ga0207644_118029881	3300025931	Switchgrass Rhizosphere	MPRIELFPFRYRDRVTGKWVKARYVAERHEIAARHSEW
Ga0207690_100360686	3300025932	Corn Rhizosphere	MPRLELFPFRYRDRLTGKWVKARYVAERHEIAARYAEWEIIGSPE
Ga0207670_113446831	3300025936	Switchgrass Rhizosphere	MSRELFPFRYRDPLTGKWVRARYLAERHEIAATCKEWEI
Ga0207669_107002733	3300025937	Miscanthus Rhizosphere	MPRLQLFPFRYRDRVTGKWVKARYVAEPQEIAARYSEWEIIGPPEIRD
Ga0207704_105285992	3300025938	Miscanthus Rhizosphere	MPRLELFSFRYRDPLTGKWVKARCVAERHEISARYAEWQMVGRPGICRIV
Ga0207704_119871051	3300025938	Miscanthus Rhizosphere	MRHRLHMPRLELFPFRYREPFTGKWVKARYRAERHEIAARYK
Ga0207691_101049035	3300025940	Miscanthus Rhizosphere	MPRLELFPFRYPDRITGKWVKARYVAERHEIAARYSE
Ga0207689_117766532	3300025942	Miscanthus Rhizosphere	MPRLELFPFATTTGSGKWVKALYVAETHEIAARYTEWEIIGRPEIRDVDPRA
Ga0207651_105679681	3300025960	Switchgrass Rhizosphere	MPRLELFPFRYRKPVTGKWVRARYVASREEIAKGN
Ga0210070_10239661	3300025962	Natural And Restored Wetlands	MPQLELFPFRYRDPITGKWVRAHYRAERHEIEARYVEWEITGPPEIRDVDS
Ga0207658_106854122	3300025986	Switchgrass Rhizosphere	MQSSIARMPLELYPFRYRDTPTGKWVRARYVAELHEIAARYKEWEITGAPEIRQG
Ga0207658_109559173	3300025986	Switchgrass Rhizosphere	MPRLELFPFATTTGSGKWVKALYVAETHEIAARYTEWEIIGRPEI
Ga0207658_115983932	3300025986	Switchgrass Rhizosphere	MPRLELFPFRYRDPLTGKWAKARNVAERHEIAARHGEWEIIGPPEIRNV
Ga0207658_116712291	3300025986	Switchgrass Rhizosphere	MPRLELFPFRYRDCLTGKWVKARYIAEREIAASHSEWEIIGPREIRDVD
Ga0207678_109453331	3300026067	Corn Rhizosphere	MPRLELFPFRYREPFTGKWVKARYRAELHEIVARYKEWEIIGPPEIREVD
Ga0207641_100241246	3300026088	Switchgrass Rhizosphere	MPIKELFPFRYRDPVTGKWVSARYVAERHEIAERYKEWEIAGPPECEPVLRG
Ga0207676_109463461	3300026095	Switchgrass Rhizosphere	MPKELFPFRYRDELTGKWVHARYRAERHEIAGRYKEWEITGAPEI
Ga0209668_111042192	3300027899	Freshwater Lake Sediment	PLMHYPFRFRDPVSGKWVRARYKAERTEIATRYAN
Ga0209079_100690572	3300027972	Freshwater Sediment	MTSTIEAFPFRYRDARTGRWVKARNKAERDDIAARYA
Ga0209391_100210421	3300027975	Freshwater Sediment	MTSTIEVFPFRYRDARTGKWVKARYKAERDEIAARYAEWEII
Ga0268266_114101701	3300028379	Switchgrass Rhizosphere	MANAPCLELFPFRYRDPRTGKWVRARYVATREQIADRHAEWEITGPAEIAP
Ga0268265_116674191	3300028380	Switchgrass Rhizosphere	MPRLELFSFRYRDPLTGKWVKARCVAERHEISARYAEWQMVGRPG
Ga0268264_112241071	3300028381	Switchgrass Rhizosphere	MPKELFPFRYRDELTGKWVRARYLAERHEIAAAYKE
Ga0318572_109494732	3300031681	Soil	MAPRLELFPFRFRDPRTGKWVRARYVAERHEIAARY
Ga0318501_101145321	3300031736	Soil	MAPRLELFPFRFRDPRTGKWVRVRYVAERHEIAARYAEWKI
Ga0307468_1014683012	3300031740	Hardwood Forest Soil	MAPRLELFPFRYRDERTGKWVRARYVAAFHEIAPRHAEFEIIGRAEIR
Ga0318492_106537902	3300031748	Soil	LGVEGAIVELFPFRFRDPLTGKWVRAQYVAERHEIAARYAEWEIIGPPEIRADS
Ga0318568_100757211	3300031819	Soil	VELFPFRFRDPLTGKWVRAQYVAERHEIAARYAEWEIIGPPEIRADSTDG
Ga0307473_106575091	3300031820	Hardwood Forest Soil	MPRLELFAFRYRDARTGKWVRARYVAERHEIAARYAEYGLIEPPEIREVGAD
Ga0306919_106617802	3300031879	Soil	MAPRLELFPFRFRDPRTGKWVRVRYVAERHEIAARYAEWKITGPAE
Ga0318536_102299821	3300031893	Soil	MAPRLELFPFRFRDPRTGKWVRARYVAERHEIAARYAEWKI
Ga0307471_1026322033	3300032180	Hardwood Forest Soil	MAPRLELYPFRYRDPRTGKWVRSRYVAERHEIKARYV
Ga0307472_1004095532	3300032205	Hardwood Forest Soil	MAPRLELFPFRYRDERTGKWVRARYVAAFHEIAARHAEFEITRFAT
Ga0306920_1014235132	3300032261	Soil	MARLELFLFRYRDSRTGKWMLARYRAELHEIVARYTEFEVVGPPEICEI
Ga0335082_107492832	3300032782	Soil	MVPRLELFPFRYRDERTGKWVRARYVAELHEIKARYADFEIIG
Ga0335070_112120851	3300032829	Soil	MVPRLELFPFRYRDERTGKWVRARYVAELHEIKARYADFEII
Ga0316605_114183401	3300033408	Soil	MPTTIELFPFRYRDPRTGKWVRARYMATREEIAARYAELEIIGSGELRRPRTG