Metagenome / Metatranscriptome Family F072441

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F072441
Family Type	Metagenome / Metatranscriptome
Number of Sequences	121
Average Sequence Length	41 residues
Representative Sequence	MFNNDKINKNKEAAIIEGPDAVLNSNEENNPKITDNK
Number of Associated Samples	105
Number of Associated Scaffolds	121

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	1.65 %
% of genes near scaffold ends (potentially truncated)	78.51 %
% of genes from short scaffolds (< 2000 bps)	96.69 %
Associated GOLD sequencing projects	101
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.21

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (98.347 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine (28.926 % of family members)
Environment Ontology (ENVO)	Unclassified (66.116 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (90.909 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 7.69% β-sheet: 0.00% Coil/Unstructured: 92.31%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.21
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.21
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 121 Family Scaffolds
PF01475	FUR	75.21
PF02615	Ldh_2	6.61
PF01451	LMWPc	2.48
PF00486	Trans_reg_C	1.65
PF00950	ABC-3	1.65
PF01895	PhoU	0.83
PF01061	ABC2_membrane	0.83
PF00230	MIP	0.83
PF07750	GcrA	0.83
PF00809	Pterin_bind	0.83
PF00528	BPD_transp_1	0.83

COG ID	Name	Functional Category	% Frequency in 121 Family Scaffolds
COG0735	Fe2+ or Zn2+ uptake regulation protein Fur/Zur	Inorganic ion transport and metabolism [P]	75.21
COG2055	Malate/lactate/ureidoglycolate dehydrogenase, LDH2 family	Energy production and conversion [C]	6.61
COG0609	ABC-type Fe3+-siderophore transport system, permease component	Inorganic ion transport and metabolism [P]	1.65
COG1108	ABC-type Mn2+/Zn2+ transport system, permease component	Inorganic ion transport and metabolism [P]	1.65
COG4606	ABC-type enterochelin transport system, permease component	Inorganic ion transport and metabolism [P]	1.65
COG0580	Glycerol uptake facilitator or related aquaporin (Major Intrinsic protein Family)	Carbohydrate transport and metabolism [G]	0.83
COG5352	Uncharacterized conserved protein	Function unknown [S]	0.83

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	98.35 %
Unclassified	root	N/A	1.65 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	98.35 %
Unclassified	root	N/A	1.65 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	98.35 %
Unclassified	root	N/A	1.65 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	97.52 %
Unclassified	root	N/A	1.65 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	45.45 %
Unclassified	root	N/A	1.65 %

Name	Rank	Taxonomy	Distribution
Pelagibacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales	33.06 %
Unclassified	root	N/A	1.65 %

Name	Rank	Taxonomy	Distribution
Pelagibacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae	33.06 %
Unclassified	root	N/A	1.65 %

Name	Rank	Taxonomy	Distribution
Candidatus Pelagibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	33.06 %
Unclassified	root	N/A	1.65 %

Name	Rank	Taxonomy	Distribution
Candidatus Pelagibacter ubique	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	18.18 %
Unclassified	root	N/A	1.65 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000117\|DelMOWin2010_c10118383	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	931	Open in IMG/M
3300000973\|BBAY93_10039107	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	1248	Open in IMG/M
3300001353\|JGI20159J14440_10032736	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	2197	Open in IMG/M
3300001354\|JGI20155J14468_10167351	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	686	Open in IMG/M
3300001951\|GOS2249_1006171	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	1490	Open in IMG/M
3300001960\|GOS2230_1051633	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	1650	Open in IMG/M
3300001969\|GOS2233_1072735	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	872	Open in IMG/M
3300001972\|GOS2216_10027017	All Organisms → cellular organisms → Bacteria → Proteobacteria	1098	Open in IMG/M
3300001974\|GOS2246_10061461	All Organisms → cellular organisms → Bacteria → Proteobacteria	830	Open in IMG/M
3300002040\|GOScombined01_102388544	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	1854	Open in IMG/M
3300002040\|GOScombined01_105270108	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	1514	Open in IMG/M
3300002176\|JGI24820J26691_1084730	All Organisms → cellular organisms → Bacteria → Proteobacteria	619	Open in IMG/M
3300002176\|JGI24820J26691_1099792	All Organisms → cellular organisms → Bacteria → Proteobacteria	564	Open in IMG/M
3300003474\|NAP4_1148541	All Organisms → cellular organisms → Bacteria → Proteobacteria	500	Open in IMG/M
3300005432\|Ga0066845_10084624	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	1193	Open in IMG/M
3300005608\|Ga0066840_10084955	All Organisms → cellular organisms → Bacteria → Proteobacteria	653	Open in IMG/M
3300005960\|Ga0066364_10160411	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	773	Open in IMG/M
3300006305\|Ga0068468_1003218	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	9066	Open in IMG/M
3300006315\|Ga0068487_1308334	All Organisms → cellular organisms → Bacteria → Proteobacteria	704	Open in IMG/M
3300006329\|Ga0068486_1026486	All Organisms → cellular organisms → Bacteria → Proteobacteria	754	Open in IMG/M
3300006332\|Ga0068500_1377777	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	1340	Open in IMG/M
3300006334\|Ga0099675_1517296	All Organisms → cellular organisms → Bacteria → Proteobacteria	678	Open in IMG/M
3300006334\|Ga0099675_1602767	All Organisms → cellular organisms → Bacteria → Proteobacteria	500	Open in IMG/M
3300006411\|Ga0099956_1014308	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1358	Open in IMG/M
3300006412\|Ga0099955_1202644	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1808	Open in IMG/M
3300007113\|Ga0101666_1042474	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	832	Open in IMG/M
3300007114\|Ga0101668_1034772	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1017	Open in IMG/M
3300007133\|Ga0101671_1058186	All Organisms → cellular organisms → Bacteria → Proteobacteria	563	Open in IMG/M
3300007283\|Ga0066366_10521242	All Organisms → cellular organisms → Bacteria → Proteobacteria	527	Open in IMG/M
3300007954\|Ga0105739_1063559	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	815	Open in IMG/M
3300008097\|Ga0111541_10213823	All Organisms → cellular organisms → Bacteria → Proteobacteria	810	Open in IMG/M
3300008253\|Ga0105349_10255547	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	729	Open in IMG/M
3300009071\|Ga0115566_10839404	All Organisms → cellular organisms → Bacteria → Proteobacteria	504	Open in IMG/M
3300009126\|Ga0118723_1361984	All Organisms → cellular organisms → Bacteria → Proteobacteria	532	Open in IMG/M
3300009193\|Ga0115551_1267362	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	753	Open in IMG/M
3300009339\|Ga0117928_1170144	All Organisms → cellular organisms → Bacteria → Proteobacteria	591	Open in IMG/M
3300009505\|Ga0115564_10547086	All Organisms → cellular organisms → Bacteria → Proteobacteria	552	Open in IMG/M
3300009703\|Ga0114933_10730230	All Organisms → cellular organisms → Bacteria → Proteobacteria	634	Open in IMG/M
3300009703\|Ga0114933_10882446	All Organisms → cellular organisms → Bacteria → Proteobacteria	568	Open in IMG/M
3300009703\|Ga0114933_11038385	All Organisms → cellular organisms → Bacteria → Proteobacteria	518	Open in IMG/M
3300010936\|Ga0137784_1050394	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	844	Open in IMG/M
3300011013\|Ga0114934_10103304	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	1384	Open in IMG/M
3300012919\|Ga0160422_10998478	All Organisms → cellular organisms → Bacteria → Proteobacteria	541	Open in IMG/M
3300012928\|Ga0163110_11337262	All Organisms → cellular organisms → Bacteria → Proteobacteria	578	Open in IMG/M
3300012954\|Ga0163111_11799082	All Organisms → cellular organisms → Bacteria → Proteobacteria	613	Open in IMG/M
3300012954\|Ga0163111_12201784	All Organisms → cellular organisms → Bacteria → Proteobacteria	558	Open in IMG/M
3300012954\|Ga0163111_12750276	All Organisms → cellular organisms → Bacteria → Proteobacteria	503	Open in IMG/M
3300013116\|Ga0171646_1172523	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	723	Open in IMG/M
3300013188\|Ga0116834_1035791	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	894	Open in IMG/M
3300017717\|Ga0181404_1167037	All Organisms → cellular organisms → Bacteria → Proteobacteria	528	Open in IMG/M
3300017743\|Ga0181402_1118395	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	679	Open in IMG/M
3300017745\|Ga0181427_1146225	All Organisms → cellular organisms → Bacteria → Proteobacteria	573	Open in IMG/M
3300017752\|Ga0181400_1096590	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	870	Open in IMG/M
3300017759\|Ga0181414_1191028	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	531	Open in IMG/M
3300017767\|Ga0181406_1255246	All Organisms → cellular organisms → Bacteria → Proteobacteria	514	Open in IMG/M
3300017782\|Ga0181380_1284832	All Organisms → cellular organisms → Bacteria → Proteobacteria	543	Open in IMG/M
3300017956\|Ga0181580_10245891	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	1237	Open in IMG/M
3300017986\|Ga0181569_10384076	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	963	Open in IMG/M
3300018876\|Ga0181564_10119609	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	1617	Open in IMG/M
3300020191\|Ga0181604_10375614	All Organisms → cellular organisms → Bacteria → Proteobacteria	621	Open in IMG/M
3300020194\|Ga0181597_10482736	All Organisms → cellular organisms → Bacteria → Proteobacteria	500	Open in IMG/M
3300020282\|Ga0211667_1032534	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1340	Open in IMG/M
3300020318\|Ga0211491_1042608	All Organisms → cellular organisms → Bacteria → Proteobacteria	782	Open in IMG/M
3300020334\|Ga0211593_1071661	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	723	Open in IMG/M
3300020340\|Ga0211594_1129721	All Organisms → cellular organisms → Bacteria → Proteobacteria	528	Open in IMG/M
3300020353\|Ga0211613_1060917	All Organisms → cellular organisms → Bacteria → Proteobacteria	882	Open in IMG/M
3300020353\|Ga0211613_1098213	All Organisms → cellular organisms → Bacteria → Proteobacteria	690	Open in IMG/M
3300020359\|Ga0211610_1042626	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	1047	Open in IMG/M
3300020360\|Ga0211712_10108387	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	684	Open in IMG/M
3300020371\|Ga0211500_1202880	All Organisms → cellular organisms → Bacteria → Proteobacteria	571	Open in IMG/M
3300020374\|Ga0211477_10179293	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	746	Open in IMG/M
3300020387\|Ga0211590_10014596	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	2367	Open in IMG/M
3300020396\|Ga0211687_10177430	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	870	Open in IMG/M
3300020396\|Ga0211687_10298825	All Organisms → cellular organisms → Bacteria → Proteobacteria	635	Open in IMG/M
3300020396\|Ga0211687_10423495	All Organisms → cellular organisms → Bacteria → Proteobacteria	508	Open in IMG/M
3300020403\|Ga0211532_10179814	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	853	Open in IMG/M
3300020405\|Ga0211496_10193491	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	754	Open in IMG/M
3300020416\|Ga0211644_10341712	All Organisms → cellular organisms → Bacteria → Proteobacteria	618	Open in IMG/M
3300020429\|Ga0211581_10100157	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1169	Open in IMG/M
3300020433\|Ga0211565_10419932	All Organisms → cellular organisms → Bacteria → Proteobacteria	584	Open in IMG/M
3300020448\|Ga0211638_10482399	All Organisms → cellular organisms → Bacteria → Proteobacteria	584	Open in IMG/M
3300020449\|Ga0211642_10483171	All Organisms → cellular organisms → Bacteria → Proteobacteria	532	Open in IMG/M
3300020450\|Ga0211641_10485470	All Organisms → cellular organisms → Bacteria → Proteobacteria	591	Open in IMG/M
3300020451\|Ga0211473_10604605	All Organisms → cellular organisms → Bacteria → Proteobacteria	555	Open in IMG/M
3300020451\|Ga0211473_10630801	All Organisms → cellular organisms → Bacteria → Proteobacteria	541	Open in IMG/M
3300020456\|Ga0211551_10109063	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	1301	Open in IMG/M
3300020459\|Ga0211514_10020887	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	3523	Open in IMG/M
3300020459\|Ga0211514_10480947	All Organisms → cellular organisms → Bacteria → Proteobacteria	611	Open in IMG/M
3300020460\|Ga0211486_10310768	All Organisms → cellular organisms → Bacteria → Proteobacteria	679	Open in IMG/M
3300020461\|Ga0211535_10436366	All Organisms → cellular organisms → Bacteria → Proteobacteria	597	Open in IMG/M
3300020463\|Ga0211676_10214667	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	1153	Open in IMG/M
3300020463\|Ga0211676_10566998	All Organisms → cellular organisms → Bacteria → Proteobacteria	589	Open in IMG/M
3300020477\|Ga0211585_10483272	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	702	Open in IMG/M
3300020477\|Ga0211585_10749948	All Organisms → cellular organisms → Bacteria → Proteobacteria	519	Open in IMG/M
3300020477\|Ga0211585_10764521	All Organisms → cellular organisms → Bacteria → Proteobacteria	512	Open in IMG/M
3300021365\|Ga0206123_10067840	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	1781	Open in IMG/M
3300022914\|Ga0255767_1088889	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	1493	Open in IMG/M
3300023087\|Ga0255774_10098979	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	1673	Open in IMG/M
3300023087\|Ga0255774_10403370	All Organisms → cellular organisms → Bacteria → Proteobacteria	615	Open in IMG/M
3300023105\|Ga0255782_10225910	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	913	Open in IMG/M
3300024230\|Ga0228638_1145465	All Organisms → cellular organisms → Bacteria → Proteobacteria	549	Open in IMG/M
3300024231\|Ga0233399_1138833	All Organisms → cellular organisms → Bacteria → Proteobacteria	526	Open in IMG/M
3300024237\|Ga0228653_1015128	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1847	Open in IMG/M
(restricted) 3300024261\|Ga0233439_10434785	All Organisms → cellular organisms → Bacteria → Proteobacteria	531	Open in IMG/M
3300025685\|Ga0209095_1177981	All Organisms → cellular organisms → Bacteria → Proteobacteria	601	Open in IMG/M
3300025830\|Ga0209832_1218334	All Organisms → cellular organisms → Bacteria → Proteobacteria	525	Open in IMG/M
3300025881\|Ga0209309_10291247	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	740	Open in IMG/M
3300025886\|Ga0209632_10432879	All Organisms → cellular organisms → Bacteria → Proteobacteria	618	Open in IMG/M
3300026076\|Ga0208261_1111946	All Organisms → cellular organisms → Bacteria → Proteobacteria	705	Open in IMG/M
3300026085\|Ga0208880_1074116	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	736	Open in IMG/M
3300026203\|Ga0207985_1043184	All Organisms → cellular organisms → Bacteria	1133	Open in IMG/M
3300026517\|Ga0228607_1132971	Not Available	609	Open in IMG/M
3300027774\|Ga0209433_10219159	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	715	Open in IMG/M
3300028194\|Ga0257106_1274777	All Organisms → cellular organisms → Bacteria → Proteobacteria	558	Open in IMG/M
3300028273\|Ga0228640_1086856	All Organisms → cellular organisms → Bacteria → Proteobacteria	609	Open in IMG/M
3300028290\|Ga0247572_1042688	Not Available	1066	Open in IMG/M
3300031775\|Ga0315326_10696262	All Organisms → cellular organisms → Bacteria → Proteobacteria	640	Open in IMG/M
3300031851\|Ga0315320_10983541	All Organisms → cellular organisms → Bacteria → Proteobacteria	511	Open in IMG/M
3300032006\|Ga0310344_10669706	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	885	Open in IMG/M
3300032047\|Ga0315330_10175866	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	1393	Open in IMG/M
3300032820\|Ga0310342_100947569	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	1006	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.17%
Host-Associated	Host-Associated	0.83%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	99.17%
Algae	Host-Associated → Algae	0.83%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	99.17%
Green Algae	Host-Associated → Algae → Green Algae	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Marine → Unclassified	29.75%
Oceanic	Environmental → Aquatic → Marine → Oceanic	24.79%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	14.05%
Coastal	Environmental → Aquatic → Marine → Coastal	8.26%
Pelagic	Environmental → Aquatic → Marine → Pelagic	5.79%
Strait	Environmental → Aquatic → Marine → Strait	5.79%
Volcanic	Environmental → Aquatic → Marine → Volcanic	5.79%
Neritic Zone	Environmental → Aquatic → Marine → Neritic Zone	4.13%
Inlet	Environmental → Aquatic → Marine → Inlet	0.83%
Ectosymbionts	Host-Associated → Algae → Green Algae → Ectosymbionts	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	29.75%
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	13.22%
Photic Zone	Environmental → Aquatic → Marine → Oceanic → Photic Zone	9.92%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	8.26%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	7.44%
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	6.61%
Unclassified	Environmental → Aquatic → Marine → Pelagic → Unclassified	5.79%
Unclassified	Environmental → Aquatic → Marine → Strait → Unclassified	5.79%
Unclassified	Environmental → Aquatic → Marine → Volcanic → Unclassified	5.79%
Unclassified	Environmental → Aquatic → Marine → Neritic Zone → Unclassified	4.13%
Aphotic Zone	Environmental → Aquatic → Marine → Oceanic → Aphotic Zone	1.65%
Unclassified	Environmental → Aquatic → Marine → Inlet → Unclassified	0.83%
Unclassified	Host-Associated → Algae → Green Algae → Ectosymbionts → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	28.93%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	10.74%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	7.44%
Seawater	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater	5.79%
Marine	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine	4.96%
Seawater	Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater	4.96%
Pelagic Marine	Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine	4.96%
Marine	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine	4.13%
Surface Seawater	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater	3.31%
Deep Subsurface	Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface	3.31%
Marine	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine	2.48%
Seawater	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater	2.48%
Pelagic Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine	2.48%
Seawater	Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater	1.65%
Marine	Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine	1.65%
Volcanic Co2 Seep Seawater	Environmental → Aquatic → Marine → Volcanic → Unclassified → Volcanic Co2 Seep Seawater	1.65%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	0.83%
Marine	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine	0.83%
Seawater	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Seawater	0.83%
Seawater	Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater	0.83%
Estuary Water	Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water	0.83%
Methane Seep Mesocosm	Environmental → Aquatic → Marine → Unclassified → Unclassified → Methane Seep Mesocosm	0.83%
Seawater	Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater	0.83%
Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine	0.83%
Estuarine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Estuarine	0.83%
Volcanic Co2 Seeps	Environmental → Aquatic → Marine → Volcanic → Unclassified → Volcanic Co2 Seeps	0.83%
Macroalgal Surface	Host-Associated → Algae → Green Algae → Ectosymbionts → Unclassified → Macroalgal Surface	0.83%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000117	Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010	Environmental	Open in IMG/M
3300000973	Macroalgal surface ecosystem from Botany Bay, Sydney, Australia - BBAY93	Host-Associated	Open in IMG/M
3300001353	Pelagic Microbial community sample from North Sea - COGITO 998_met_09	Environmental	Open in IMG/M
3300001354	Pelagic Microbial community sample from North Sea - COGITO 998_met_05	Environmental	Open in IMG/M
3300001951	Marine microbial communities from North Seamore Island, Equador - GS034	Environmental	Open in IMG/M
3300001960	Marine microbial communities from South of Charleston, South Carolina, USA - GS014	Environmental	Open in IMG/M
3300001969	Marine microbial communities from Yucatan Channel, Mexico - GS017	Environmental	Open in IMG/M
3300001972	Marine microbial communities from the Sargasso Sea - GS000d	Environmental	Open in IMG/M
3300001974	Marine microbial communities from Upwelling, Fernandina Island, Equador - GS031	Environmental	Open in IMG/M
3300002040	GS000c - Sargasso Station 3	Environmental	Open in IMG/M
3300002176	Marine microbial communities from oxygen minimum zone in mesopelagic equatorial Pacific - METZYME_5_50m	Environmental	Open in IMG/M
3300003474	Estuarine microbial communities from the Sarno estuary, Gulf of Naples, Italy - Sample Station 4	Environmental	Open in IMG/M
3300005432	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201310SV78	Environmental	Open in IMG/M
3300005608	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302PF84A	Environmental	Open in IMG/M
3300005960	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S7_td_SurfaceA_ad_6m_LV_A	Environmental	Open in IMG/M
3300006305	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_1_0025m	Environmental	Open in IMG/M
3300006315	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT233_1_0770m	Environmental	Open in IMG/M
3300006329	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT233_1_0500m	Environmental	Open in IMG/M
3300006332	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_1_0200m	Environmental	Open in IMG/M
3300006334	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT224_1_0025m	Environmental	Open in IMG/M
3300006411	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT225_1_0200m	Environmental	Open in IMG/M
3300006412	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT225_1_0125m	Environmental	Open in IMG/M
3300007113	Seawater microbiome, Papua New Guinea CO2 seep, Upa-Upasina 'bubble' site, Water-is	Environmental	Open in IMG/M
3300007114	Seawater microbiome, Papua New Guinea CO2 seep, Upa-Upasina 'bubble', waterEBis4	Environmental	Open in IMG/M
3300007133	Seawater microbiome, Papua New Guinea CO2 seep, Dobu 'bubble', water-ds	Environmental	Open in IMG/M
3300007283	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S7_td_250_ad_252m_LV_B	Environmental	Open in IMG/M
3300007954	Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1373B_0.2um	Environmental	Open in IMG/M
3300008097	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S7_td_DCM_ad_131m_LV_B (version 2)	Environmental	Open in IMG/M
3300008253	Methane-oxidizing microbial communities from mesocosms in the Hudson Canyon - EN1B Hudson Canyon	Environmental	Open in IMG/M
3300009071	Pelagic marine microbial communities from North Sea - COGITO_mtgs_120405	Environmental	Open in IMG/M
3300009126	Combined Assembly of Gp0139357, Gp0139356	Environmental	Open in IMG/M
3300009193	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110321	Environmental	Open in IMG/M
3300009339	Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, May cruise - 103m, 2.7-0.2um, replicate a	Environmental	Open in IMG/M
3300009505	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110523	Environmental	Open in IMG/M
3300009703	Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 4SBTROV12_W25 metaG	Environmental	Open in IMG/M
3300010936	Marine microbial communities from surface seawater of North Pacific Subtropical Gyre ? Stn. ALOHA, 15m	Environmental	Open in IMG/M
3300011013	Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 4SBTROV10_white metaG	Environmental	Open in IMG/M
3300012919	Marine microbial communities from the Central Pacific Ocean - Fk160115 60m metaG	Environmental	Open in IMG/M
3300012928	Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St17 metaG	Environmental	Open in IMG/M
3300012954	Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St18 metaG	Environmental	Open in IMG/M
3300013116	Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, May cruise - 103m, 2.7-0.2um, replicate b	Environmental	Open in IMG/M
3300013188	Marine hypoxic microbial communities from the Gulf of Mexico, USA - 6m_Station1_GOM_Metagenome	Environmental	Open in IMG/M
3300017717	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 27 SPOT_SRF_2011-10-25	Environmental	Open in IMG/M
3300017743	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 25 SPOT_SRF_2011-08-17	Environmental	Open in IMG/M
3300017745	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 50 SPOT_SRF_2014-01-15	Environmental	Open in IMG/M
3300017752	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 23 SPOT_SRF_2011-06-22	Environmental	Open in IMG/M
3300017759	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 37 SPOT_SRF_2012-11-28	Environmental	Open in IMG/M
3300017767	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 29 SPOT_SRF_2011-12-20	Environmental	Open in IMG/M
3300017782	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 3 SPOT_SRF_2009-08-19	Environmental	Open in IMG/M
3300017956	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071403BT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017986	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101405AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300018876	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011513CT metaG (megahit assembly)	Environmental	Open in IMG/M
3300020191	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041410US metaG (spades assembly)	Environmental	Open in IMG/M
3300020194	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041403US metaG (spades assembly)	Environmental	Open in IMG/M
3300020282	Marine microbial communities from Tara Oceans - TARA_B100000963 (ERX556074-ERR599169)	Environmental	Open in IMG/M
3300020318	Marine microbial communities from Tara Oceans - TARA_B000000475 (ERX556107-ERR598973)	Environmental	Open in IMG/M
3300020334	Marine microbial communities from Tara Oceans - TARA_B100001121 (ERX555938-ERR599091)	Environmental	Open in IMG/M
3300020340	Marine microbial communities from Tara Oceans - TARA_B100001121 (ERX555960-ERR599119)	Environmental	Open in IMG/M
3300020353	Marine microbial communities from Tara Oceans - TARA_B100000686 (ERX556093-ERR598998)	Environmental	Open in IMG/M
3300020359	Marine microbial communities from Tara Oceans - TARA_B100000686 (ERX555921-ERR599117)	Environmental	Open in IMG/M
3300020360	Marine microbial communities from Tara Oceans - TARA_B100000459 (ERX555918-ERR599165)	Environmental	Open in IMG/M
3300020371	Marine microbial communities from Tara Oceans - TARA_B100000003 (ERX555978-ERR598991)	Environmental	Open in IMG/M
3300020374	Marine microbial communities from Tara Oceans - TARA_A100001011 (ERX291766-ERR318618)	Environmental	Open in IMG/M
3300020387	Marine microbial communities from Tara Oceans - TARA_B100000405 (ERX556119-ERR599023)	Environmental	Open in IMG/M
3300020396	Marine microbial communities from Tara Oceans - TARA_B100000767 (ERX555915-ERR599122)	Environmental	Open in IMG/M
3300020403	Marine microbial communities from Tara Oceans - TARA_B100000085 (ERX556015-ERR599145)	Environmental	Open in IMG/M
3300020405	Marine microbial communities from Tara Oceans - TARA_B000000532 (ERX556129-ERR599012)	Environmental	Open in IMG/M
3300020416	Marine microbial communities from Tara Oceans - TARA_B100001109 (ERX556137-ERR599039)	Environmental	Open in IMG/M
3300020429	Marine microbial communities from Tara Oceans - TARA_B100000614 (ERX556134-ERR599032)	Environmental	Open in IMG/M
3300020433	Marine microbial communities from Tara Oceans - TARA_B100001989 (ERX556106-ERR599030)	Environmental	Open in IMG/M
3300020448	Marine microbial communities from Tara Oceans - TARA_B100000941 (ERX555919-ERR598954)	Environmental	Open in IMG/M
3300020449	Marine microbial communities from Tara Oceans - TARA_B100001079 (ERX556008-ERR599020)	Environmental	Open in IMG/M
3300020450	Marine microbial communities from Tara Oceans - TARA_B100000575 (ERX555933-ERR599077)	Environmental	Open in IMG/M
3300020451	Marine microbial communities from Tara Oceans - TARA_B100001778 (ERX555927-ERR598996)	Environmental	Open in IMG/M
3300020456	Marine microbial communities from Tara Oceans - TARA_B100001741 (ERX555984-ERR599123)	Environmental	Open in IMG/M
3300020459	Marine microbial communities from Tara Oceans - TARA_X000000368 (ERX555913-ERR599095)	Environmental	Open in IMG/M
3300020460	Marine microbial communities from Tara Oceans - TARA_A100001037 (ERX555931-ERR599097)	Environmental	Open in IMG/M
3300020461	Marine microbial communities from Tara Oceans - TARA_B100000401 (ERX556127-ERR599150)	Environmental	Open in IMG/M
3300020463	Marine microbial communities from Tara Oceans - TARA_B100001057 (ERX555988-ERR599050)	Environmental	Open in IMG/M
3300020477	Marine microbial communities from Tara Oceans - TARA_B100001123 (ERX555935-ERR599156)	Environmental	Open in IMG/M
3300021365	Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160316_1	Environmental	Open in IMG/M
3300022914	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071402CT metaG	Environmental	Open in IMG/M
3300023087	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101407AT metaG	Environmental	Open in IMG/M
3300023105	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101408AT metaG	Environmental	Open in IMG/M
3300024230	Seawater microbial communities from Monterey Bay, California, United States - 48D	Environmental	Open in IMG/M
3300024231	Seawater microbial communities from Monterey Bay, California, United States - 43D	Environmental	Open in IMG/M
3300024237	Seawater microbial communities from Monterey Bay, California, United States - 65D	Environmental	Open in IMG/M
3300024261 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_123_September2016_100_MG	Environmental	Open in IMG/M
3300025685	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110404 (SPAdes)	Environmental	Open in IMG/M
3300025830	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110407 (SPAdes)	Environmental	Open in IMG/M
3300025881	Pelagic marine microbial communities from North Sea - COGITO_mtgs_120412 (SPAdes)	Environmental	Open in IMG/M
3300025886	Pelagic Microbial community sample from North Sea - COGITO 998_met_10 (SPAdes)	Environmental	Open in IMG/M
3300026076	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S7_td_DCM_ad_131m_LV_B (SPAdes)	Environmental	Open in IMG/M
3300026085	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S23_td_SurfaceB_ad_5m_LV_B (SPAdes)	Environmental	Open in IMG/M
3300026203	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302SV84 (SPAdes)	Environmental	Open in IMG/M
3300026517	Seawater microbial communities from Monterey Bay, California, United States - 8D	Environmental	Open in IMG/M
3300027774	Marine microbial communities from oxygen minimum zone in mesopelagic equatorial Pacific - METZYME_5_50m (SPAdes)	Environmental	Open in IMG/M
3300028194	Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2011_P26_10m	Environmental	Open in IMG/M
3300028273	Seawater microbial communities from Monterey Bay, California, United States - 51D	Environmental	Open in IMG/M
3300028290	Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 25R (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031775	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 80m 32315	Environmental	Open in IMG/M
3300031851	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 21515	Environmental	Open in IMG/M
3300032006	Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-200_MG	Environmental	Open in IMG/M
3300032047	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 34915	Environmental	Open in IMG/M
3300032820	Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - S1503-DNA-20-500_MG	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
DelMOWin2010_101183833	3300000117	Marine	MFNKDNINKIKAATIIEGPEEVLNSNEENNPNITENNPPITE*
BBAY93_100391074	3300000973	Macroalgal Surface	MDCFILSNERMNKNKEAAIIEGPEAVLNSKDVNNPIITDNKPP
JGI20159J14440_100327363	3300001353	Pelagic Marine	MFNKDNINKIKAATIIEGPEEVLNSNEENNPNITE*
JGI20155J14468_101673513	3300001354	Pelagic Marine	MFNKDKINNIKAATIIEGPDEVLNSNEENNPNITDNKP
GOS2249_10061713	3300001951	Marine	MLSKDNINKIKEAIIIEGPDDVLNSKDENSPNNTD
GOS2230_10516331	3300001960	Marine	MNKNKEAAMIDGPEDVLNCNEVNKPKITDNKPPSTE*
GOS2233_10727351	3300001969	Marine	MDCFILSNERMNKNKEAAIIEGPEAVLNSKDVNNPIITDNKPPITEKRIICCGL
GOS2216_100270174	3300001972	Marine	MDCFIFNNESTNKIKDAVIIEGPDAVLNSSEENNPIITDSKPPNY*
GOS2246_100614611	3300001974	Marine	MDCFIFNNESINRTKDAVIIEGPDAVLNSSEENSPIITDNKPPI
GOScombined01_1023885443	3300002040	Marine	NLIDCLMLSKDNINNTKAAMIIEGPDDVLNSNEENKPNKTDKRPPNY*
GOScombined01_1052701081	3300002040	Marine	LIDCFILSRESINRNKEAAIIEGPEAVLNSKDVNSPIITDNKPPITEKRII
JGI24820J26691_10847302	3300002176	Marine	MFSSDKINRNKEAAIIEGPEAVLNSSEENNPKITDNKPPIIEYITIFWGLEE
JGI24820J26691_10997922	3300002176	Marine	MFSSDKINRNKEAAIIEGPEAVLNSSEENNPKITDNKQIGR
NAP4_11485412	3300003474	Estuarine	MDCFIFNKDKINKNKDAAIIEGPDAVLNSSDENKPIITDNR
Ga0066845_100846241	3300005432	Marine	MDCFIFNNESINRNKDAVIIEGPEAVLNSSEENSPITTDNKPP
Ga0066840_100849552	3300005608	Marine	MFNNDKINKNKEAAIIDGPEAVLNSNEENNPKITDN
Ga0066364_101604111	3300005960	Marine	LILNNESINNKKAAVIIEGPDEVLNSSEENNPKITDNKPPIIE*
Ga0068468_100321811	3300006305	Marine	MDCFILSNERMNKNKEAAIIDGPEAVLNSKDVNNPI
Ga0068487_13083341	3300006315	Marine	MDCFIFNNESINKIKDAVIIEGPDAVLNSSEENNPIITDSKPPIIA
Ga0068486_10264861	3300006329	Marine	MDCFIFNNESINRTKDAVIIEGPDAVLNSSEENSPII
Ga0068500_13777775	3300006332	Marine	MDCFIFNNESINRTKDAVIIEGPDAVLNSNEEKAAL
Ga0099675_15172962	3300006334	Marine	LIFSNESINKNKEAAIIDGPEEVLNSSEVNKPKTTDS
Ga0099675_16027672	3300006334	Marine	MFNNDKINNNKDAAIIEGPDAVLNSSEENNPKITDNNP
Ga0099956_10143081	3300006411	Marine	MDCFIFNNERINKTNDAVIIEGPDAVLNSSEENSPIITDNK
Ga0099955_12026444	3300006412	Marine	MDCFIFNNESINRTKDAVIIEGPDAVLNSSEENSPITTDNKPPIIE
Ga0101666_10424741	3300007113	Volcanic Co2 Seep Seawater	MDCFIFNKDKINKNKDAAIIEGPDAVLNSSDENKPIITD
Ga0101668_10347721	3300007114	Volcanic Co2 Seep Seawater	MDCFILNKDKINKNKEAAIIDGPDAVLNSSEENKPIITDNK
Ga0101671_10581861	3300007133	Volcanic Co2 Seeps	MFNNDKINKNKEAAIIDGPEAVLNSNEENNPKITD
Ga0066366_105212422	3300007283	Marine	MDCFIFNNESINKTNDAVIIEGPDGVLNSSDENNPII
Ga0105739_10635593	3300007954	Estuary Water	MFNKDNINKTSAATIIEGPDDVLNSKEQNNPNITDNNPP
Ga0111541_102138232	3300008097	Marine	MDCFIFNNESINRTKAAVIIEGPDAVLNSSEENSPIITDNKP
Ga0105349_102555471	3300008253	Methane Seep Mesocosm	MFNKDKINKAKDATIIEGPEEVLNSNEVNNPNITDNKPPIIEKRTIFCGLS
Ga0115566_108394042	3300009071	Pelagic Marine	MNRNKAAAIIEGPEDVLNSKEENNPNITDSNPPMIE*
Ga0118723_13619841	3300009126	Marine	MDCFIFNNESINRTKDAVIIEGPDAVLNSSEENSPI
Ga0115551_12673623	3300009193	Pelagic Marine	MNKNKAAAMIDGPEDVLNSKEENNPNITDNKPPMIE*
Ga0117928_11701441	3300009339	Marine	MDCFIFNNESINRTKDAVIIEGPDAVLNSSEENSPIITD
Ga0115564_105470862	3300009505	Pelagic Marine	MNKNKAAAIIEGPEDVLNSKEENNPNITDSNPPMIE*
Ga0114933_107302302	3300009703	Deep Subsurface	MDCLIFNNERINKTNDAVIIEGPDAVLNSSEENKPIITDSKPPITENNTIFCG
Ga0114933_108824462	3300009703	Deep Subsurface	MDCFIFNNESINKTNDAVIIEGPDAVLNSSEENKPIITDSKPPITENNTIFCG
Ga0114933_110383851	3300009703	Deep Subsurface	MDCFIFNNESINKTNDAVIIEGPDAVLNSSEENKPIITDSKPPITENNTIFCGLS
Ga0137784_10503941	3300010936	Marine	MFNNDKINSNKDAAIIEGPDAVLNSSEENNPKITDNKPPIIEYITIF*
Ga0114934_101033041	3300011013	Deep Subsurface	MDCFIFNNESINKTKDAVIIEGPDAVLNSSEENKPIITDSKPPITENNTIFCGL
Ga0160422_109984781	3300012919	Seawater	MFSNDKINKNKEAVIIEGPDAVLNSSEENNPKITDNKPPIIEYITIF
Ga0163110_113372622	3300012928	Surface Seawater	MNNNKAAVIIDGPDAVLNSSEENNPKITDNKPPIIE*
Ga0163111_117990821	3300012954	Surface Seawater	MNNTKAAMIIEGPDDVLNSNEENSPNKTDKRPPITENKTIF*
Ga0163111_122017841	3300012954	Surface Seawater	MNKNKAAAIIEGPEAVLNSKEVNKPKITDNKPPITEII
Ga0163111_127502762	3300012954	Surface Seawater	LIDCFIFSSESINKNKEAAIIDGPEAVLNSKDVNSPIITDN
Ga0171646_11725233	3300013116	Marine	MDCFIFNNESINRTKDAVIIEGPDAVLNSSEENSPIITDNKPPIIE
Ga0116834_10357913	3300013188	Marine	MDCFILNKDKMNKNNDAAIIDGPEAVLNSSEENSPSITDN
Ga0181404_11670371	3300017717	Seawater	MFNKDNINKISAATIIEGPDDVLNSKEVNNPNTNDKKHPMIE
Ga0181402_11183951	3300017743	Seawater	LILSKDNINKTKAAIIIEGPDAVLNSNEENKPNITDKRPPITENKTIF
Ga0181427_11462252	3300017745	Seawater	LNNERINKNKEAAIIEGPDDVLNSSEENSPETTDNKPP
Ga0181400_10965901	3300017752	Seawater	MNKNKAAAIIEGPEDVLNSKEENNPNITDNTPPIIE
Ga0181414_11910282	3300017759	Seawater	MFNKESMNRNKAAAIIEGPDDVLNSKEENNPNITDNKPPMIE
Ga0181406_12552462	3300017767	Seawater	MNKNKAAAMIEGPEDVLNSKEENNPNVTDNKPPIIE
Ga0181380_12848321	3300017782	Seawater	MNKNKEAAMIDGPEDVLNCNEVNKPKITDNKPPSTE
Ga0181580_102458911	3300017956	Salt Marsh	MNKNNEAAIIEGPEAVLNSSEENNPSITDNKPPIIEKNIIFXGLSE
Ga0181569_103840763	3300017986	Salt Marsh	MFNNDKINSNKDAAIIEGPDAVLNSSEENNPKITDNKPPIIEYI
Ga0181564_101196091	3300018876	Salt Marsh	MDCFILNKDKMNKNNEAAIIEGPEAVLNSSEENNPSI
Ga0181604_103756142	3300020191	Salt Marsh	MNKNNEAAIIEGPEAVLNSSEENNPSITDNKPPIIEKNIIFXGL
Ga0181597_104827361	3300020194	Salt Marsh	MDCFIFNKDKINKNKDAAIIEGPDAVLNSSDENKPIITDNRPPITEKNKIFR
Ga0211667_10325341	3300020282	Marine	MFNNDKINKNKEAAIIEGPDAVLNSNEENNPKITDNK
Ga0211491_10426082	3300020318	Marine	MDCFIFNNESINRTKDAVIIEGPDAVLNSSEENSPIITDN
Ga0211593_10716611	3300020334	Marine	MLSKDSINNTKAAMIIEGPDDVLNSNEENSPNKTDKRPPITEN
Ga0211594_11297211	3300020340	Marine	MFSSDKINRNKEAAIIDGPEAVLNSNEENNPKITDNN
Ga0211613_10609173	3300020353	Marine	MDCFIFNNESINKIKDALIIEGPDAVLNSSEANKPKITDSKPPIIENN
Ga0211613_10982133	3300020353	Marine	MDCFIFNNESINKIKDAVIIEGPDAVLNSSEENSPIITD
Ga0211610_10426263	3300020359	Marine	MDCFIFNNESINKIKDAVIIEGPDAVLNSSEENNPIITDSKPPIIANSTIF
Ga0211712_101083871	3300020360	Marine	MFNNDKINSNKDAAIIEGPDAVLNSSEENNPKITDNNPP
Ga0211500_12028801	3300020371	Marine	MFNNDKINSNKDAAIIEGPDAVLNSSEENNPKITD
Ga0211477_101792931	3300020374	Marine	MNNNKAAVIIEGPDEVLNSSEENNPKITDNKPPIIE
Ga0211590_100145961	3300020387	Marine	MNKNKAAAIIEGPEAVLNSKEVNKPKITDNKPPITE
Ga0211687_101774303	3300020396	Marine	MFNKDNINNVNAATIIEGPEEVLNSNEENNPKITDSNP
Ga0211687_102988253	3300020396	Marine	MFNKDNINKIKAATIIEGPEEVLNSNEENNPNITDN
Ga0211687_104234951	3300020396	Marine	MFNKDNINNISAATIIEGPEEVLNSNEENNPNITDNKPPITE
Ga0211532_101798143	3300020403	Marine	LIFSNESINKNKEAAIIDGPEEVLNSSEVNKPKTTDSKPPRIEKI
Ga0211496_101934911	3300020405	Marine	MLSKDNINKIKEAIIIEGPDDVLNSRDENSPNNTDNN
Ga0211644_103417122	3300020416	Marine	MNNNKAAVIIDGPDAVLNSSEENNPKITDNKPPII
Ga0211581_101001574	3300020429	Marine	MFNNDKINSNKDAAIIEGPEAVLNSSEENNPNITDNKPPMIEYIT
Ga0211565_104199322	3300020433	Marine	MFNNDKINKNKDAAIIEGPDAVLNSSEENNPKITDNN
Ga0211638_104823991	3300020448	Marine	MNKNKEAAMIDGPEDVLNCNEVNKPKITDNKPPSIE
Ga0211642_104831712	3300020449	Marine	MDCFIFNNESINRTKDAVIIEGPDAVLNSSEENSPIITDNKPPIIEK
Ga0211641_104854702	3300020450	Marine	MFNSDKINRNKDAVIIEGPDAVLNSSEENNPKITDNKPPKIEYITIFXGLEEIF
Ga0211473_106046052	3300020451	Marine	MDCFIFNNERINKTNDAVIIEGPDAVLNSSEENSPIITDN
Ga0211473_106308012	3300020451	Marine	MFSKDRINNSNAAAIIDGPDEVLNSNEVNNPIITDN
Ga0211551_101090631	3300020456	Marine	MDCFIFNNESINKIKDAVIIEGPDAVLNSNDENKPIITD
Ga0211514_100208876	3300020459	Marine	MNKNKEAAMIDGPEDVLNSKEVNKPKITDSKPPSTE
Ga0211514_104809471	3300020459	Marine	MFNNDKINKNKEAAIIDGPEAVLNSNEENNPKITDNK
Ga0211486_103107682	3300020460	Marine	MDCFIFNNESINKTKDAVIIEGPDAVLNSNDENNPIITD
Ga0211535_104363661	3300020461	Marine	LIDCFILSRESINRNKEAAIIDGPEAVLNSKDVNSPII
Ga0211676_102146673	3300020463	Marine	MNKNKEAAMIDGPEDVLNCNEVNKPKITDNKPPITE
Ga0211676_105669982	3300020463	Marine	MFSSDKINRNKEAAIIEGPDAVLNSSEENNPKITDNKP
Ga0211585_104832723	3300020477	Marine	MLSKDNINNTKAAMIIEGPDDVLNSNEENKPNKTDKRPP
Ga0211585_107499482	3300020477	Marine	MFNNESINKNKEAAIIDGPDDVLNSKEENNPIITDNK
Ga0211585_107645211	3300020477	Marine	MDCFIFNNESINKTNDAVIIEGPDAVLNSSEENKPIITDSKPPITE
Ga0206123_100678401	3300021365	Seawater	MFNKDNINKISAATIIEGPDDVLNSKEQNNPNITDNNPPITE
Ga0255767_10888894	3300022914	Salt Marsh	MDCFIFNKDKINKNKDAAIIEGPDAVLNSSDENKPIITDNRPPITEKNTIFRGL
Ga0255774_100989794	3300023087	Salt Marsh	MDCFIFNKDKINKNKDAAIIEGPDAVLNSSDENKPIITDNRPPITEKNT
Ga0255774_104033701	3300023087	Salt Marsh	MDCFILNKDKMNKNNEAAIIEGPEAVLNSSEENSPSITDNKPPII
Ga0255782_102259101	3300023105	Salt Marsh	MDCFILNKDKMNKNNEAAIIEGPEAVLNSSEENNPRITDNKPPIIE
Ga0228638_11454651	3300024230	Seawater	MNKNKAAAIIEGPDDVLNSKEENNPNITDNTPPIIEYTTIFC
Ga0233399_11388332	3300024231	Seawater	MFNKDNMNNIKAATIIDGPDDVLNSNDENNPNITD
Ga0228653_10151281	3300024237	Seawater	MNKNKAAAMIEGPEDVLNSKEENNPNITDNKPPMIE
(restricted) Ga0233439_104347851	3300024261	Seawater	MFNKDNINNINAATIIEGPEEVLNSNEENNPKITDNKPPITE
Ga0209095_11779811	3300025685	Pelagic Marine	MFNKERMNRNKAAAIIEGPDDVLNSSEENSPKTTDNKPPMIE
Ga0209832_12183341	3300025830	Pelagic Marine	MFNKDKINNIKAATIIEGPDEVLNSNEENNPNITDNKPPITE
Ga0209309_102912471	3300025881	Pelagic Marine	MNKNKAAAIIEGPEDVLNSKEENNPNITDSNPPMIE
Ga0209632_104328791	3300025886	Pelagic Marine	LNNERINKNKEAAIIEGPDDVLNSSEENSPKTTDSKP
Ga0208261_11119463	3300026076	Marine	MFNNDKINKNKEAAIIEGPDAVLNSNEENNPNITDNKPPTIE
Ga0208880_10741163	3300026085	Marine	MDCFIFNKDKINKNKDAAIIEGPDAVLNSSDENKPIITDNRPP
Ga0207985_10431844	3300026203	Marine	MFNNDKINNNKDAAIIEGPDAVLNSSEENNPKITDN
Ga0228607_11329712	3300026517	Seawater	MNKNKAAAMIEGPEDVLNYKEENNPNITDNKPPMIE
Ga0209433_102191591	3300027774	Marine	MFSSDKINRNKEAAIIEGPEAVLNSSEENNPKITDNKP
Ga0257106_12747771	3300028194	Marine	MFDKDNINKIKAATIMEGPDDVLNSKEQNNPNITDNN
Ga0228640_10868562	3300028273	Seawater	MFNKDNMNNIKAATIIDGPDDVLNSNDENNPNITDNKPP
Ga0247572_10426882	3300028290	Seawater	MFNKDNINNIRAATIIEGPDDVLNSKEENNPKITDNKPPITE
Ga0315326_106962622	3300031775	Seawater	MDCFIFNNESINRTKDAVIIEGPDAVLNSSEENSPINTD
Ga0315320_109835412	3300031851	Seawater	MFNKDNINKISAATIIEGPDDVLNSKEQNNPNITDNNP
Ga0310344_106697063	3300032006	Seawater	MDCFIFNKESINKTKEADIIEGPDAVLNSSDENKPIITDNKPP
Ga0315330_101758661	3300032047	Seawater	MNNINAAAIIEGPEDVLNSNEEYSPKITDNKPPIIE
Ga0310342_1009475691	3300032820	Seawater	MDCFIFNNESINRTKDAVIIEGPDAVLNSSEENSP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters