Metagenome / Metatranscriptome Family F072362

Basic Information
Family ID	F072362
Family Type	Metagenome / Metatranscriptome
Number of Sequences	121
Average Sequence Length	50 residues
Representative Sequence	MHKLFAIGVAIYLVGDPSLSMLASFSESRELIVASALAFIAVPWVVSQIDN
Number of Associated Samples	66
Number of Associated Scaffolds	121

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	81.82 %
% of genes near scaffold ends (potentially truncated)	24.79 %
% of genes from short scaffolds (< 2000 bps)	69.42 %
Associated GOLD sequencing projects	59
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.41

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Unclassified (57.851 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment (19.008 % of family members)
Environment Ontology (ENVO)	Unclassified (39.669 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Sediment (saline) (32.231 % of family members)

Multiple Sequence Alignments

Select alignment to view:

Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60 1BS_KBA_SWE12_21mDRAFT_100119993 2TDF_OR_ARG05_123mDRAFT_10073724 3JGI24024J18818_100090903 4JGI24024J18818_100195974 5Ga0055475_100043392 6Ga0055450_100391161 7Ga0055474_100838422 8Ga0055515_101674521 9Ga0070728_106957161 10Ga0070727_101189342 11Ga0070727_102869031 12Ga0070727_104280472 13Ga0070726_103097702 14Ga0070722_100215584 15Ga0070723_100134425 16Ga0070723_100661592 17Ga0070723_103341942 18Ga0070723_103851322 19Ga0070723_104742351 20Ga0070725_103355982 21Ga0099972_109977392 22Ga0099972_110353411 23Ga0099972_120290882 24Ga0099972_130535411 25Ga0102541_11394882 26Ga0115369_101601082 27Ga0115369_103044352 28Ga0129286_102369022 29Ga0129286_102971821 30Ga0114931_100217665 31Ga0136651_100297463 32Ga0118731_1022788889 33Ga0118731_1046816142 34Ga0118731_1046863522 35Ga0118731_1049382481 36Ga0118731_1051996911 37Ga0118731_1075700902 38Ga0118731_1079047976 39Ga0118731_1085795605 40Ga0118731_1098930413 41Ga0118731_1118820063 42Ga0118731_1140428491 43Ga0118731_1142859211 44Ga0118733_1001518783 45Ga0118733_1002452324 46Ga0118733_1006850572 47Ga0118733_1007308861 48Ga0118733_1013038382 49Ga0118733_1025606832 50Ga0118733_1030040602 51Ga0118733_1058849092 52Ga0164315_111373012 53Ga0164313_100196665 54Ga0164313_112433301 55Ga0120688_10286421 56Ga0194017_10206682 57Ga0194007_10177252 58Ga0193972_10368491 59Ga0210330_10101672 60Ga0224513_100101731 61Ga0224513_104178091 62Ga0210321_10569121 63Ga0212118_104570191 64Ga0233409_100270861 65Ga0233409_100597962 66Ga0255040_105031741 67Ga0255039_101195841 68Ga0255043_102337512 69Ga0255046_103795842 70Ga0255045_100134482 71Ga0255045_101090682 72Ga0255044_103681432 73Ga0210110_11092882 74Ga0210085_10947771 75Ga0210074_100007827 76Ga0210062_10582531 77Ga0210101_11298021 78Ga0210123_11592161 79Ga0209456_101804891 80Ga0209456_103077932 81Ga0209456_103133972 82Ga0209567_102379761 83Ga0209379_101038622 84Ga0209273_104204502 85Ga0209633_100409841 86Ga0209633_101009175 87Ga0209271_104278592 88Ga0209013_100151163 89Ga0209013_100426602 90Ga0209013_100447962 91Ga0209013_104265052 92Ga0209013_106722801 93Ga0209013_106786122 94Ga0209536_1001055543 95Ga0209536_1010167032 96Ga0265306_103678712 97Ga0265309_102809303 98Ga0265309_104489502 99Ga0265303_100811792 100Ga0265303_101493841 101Ga0265303_101520483 102Ga0316575_105101921 103Ga0316201_100176942 104Ga0316201_100743462 105Ga0316201_115279202 106Ga0316187_100373125 107Ga0316187_101480003 108Ga0316198_100579282 109Ga0316198_100698463 110Ga0316196_101574252 111Ga0316191_100457579 112Ga0316191_100648501 113Ga0316191_106279011 114Ga0316191_110716331 115Ga0316190_109745962 116Ga0316194_102699501 117Ga0316189_100669955 118Ga0316197_100161786 119Ga0316193_101070833 120Ga0316193_103102121 121Ga0316193_107571552
Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60 1BS_KBA_SWE12_21mDRAFT_100119993 2TDF_OR_ARG05_123mDRAFT_10073724 3JGI24024J18818_100090903 4Ga0070727_104280472 5Ga0114931_100217665 6Ga0118731_1075700902 7Ga0118733_1030040602 8Ga0255040_105031741 9Ga0255039_101195841 10Ga0210085_10947771 11Ga0209456_103077932
Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50. 1Ga0070725_103355982 2TDF_OR_ARG05_123mDRAFT_10073724 3Ga0055450_100391161 4Ga0055474_100838422 5Ga0099972_110353411 6Ga0129286_102369022 7Ga0114931_100217665 8Ga0118731_1049382481 9Ga0118731_1140428491 10Ga0118731_1142859211 11Ga0164313_100196665 12Ga0210330_10101672 13Ga0224513_104178091 14Ga0209456_103077932 15Ga0209567_102379761 16Ga0209536_1001055543 17Ga0265309_104489502 18Ga0316187_101480003 19Ga0316191_110716331 20Ga0316197_100161786
Powered by MSAViewer

Neighboring Clusters of Orthologous Genes (COGs)

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 58.23% β-sheet: 0.00% Coil/Unstructured: 41.77%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
Powered by Feature Viewer

Structure Viewer
WebGL does not seem to be available. This can be caused by an outdated browser, graphics card driver issue, or bad weather. Sometimes, just restarting the browser helps. Also, make sure hardware acceleration is enabled in your browser. For a list of supported browsers, refer to http://caniuse.com/#feat=webgl. Load File(s)

Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.41
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.41
Powered by PDBe Molstar

Pfam ID	Name	% Frequency in 121 Family Scaffolds
PF06080	DUF938	48.76
PF02082	Rrf2	11.57
PF00011	HSP20	8.26
PF00132	Hexapep	6.61
PF00152	tRNA-synt_2	4.13
PF12706	Lactamase_B_2	3.31
PF07992	Pyr_redox_2	1.65
PF08240	ADH_N	0.83
PF08750	CNP1	0.83
PF00588	SpoU_methylase	0.83

COG ID	Name	Functional Category	% Frequency in 121 Family Scaffolds
COG0640	DNA-binding transcriptional regulator, ArsR family	Transcription [K]	11.57
COG1414	DNA-binding transcriptional regulator, IclR family	Transcription [K]	11.57
COG1725	DNA-binding transcriptional regulator YhcF, GntR family	Transcription [K]	11.57
COG1959	DNA-binding transcriptional regulator, IscR family	Transcription [K]	11.57
COG2186	DNA-binding transcriptional regulator, FadR family	Transcription [K]	11.57
COG2188	DNA-binding transcriptional regulator, GntR family	Transcription [K]	11.57
COG2378	Predicted DNA-binding transcriptional regulator YobV, contains HTH and WYL domains	Transcription [K]	11.57
COG2524	Predicted transcriptional regulator, contains C-terminal CBS domains	Transcription [K]	11.57
COG0071	Small heat shock protein IbpA, HSP20 family	Posttranslational modification, protein turnover, chaperones [O]	8.26
COG0017	Aspartyl/asparaginyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	4.13

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	42.15 %
Unclassified	root	N/A	57.85 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	42.15 %
Unclassified	root	N/A	57.85 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	42.15 %
Unclassified	root	N/A	57.85 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	42.15 %
Unclassified	root	N/A	57.85 %

Name	Rank	Taxonomy	Distribution
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	29.75 %
Unclassified	root	N/A	57.85 %

Name	Rank	Taxonomy	Distribution
Chromatiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales	7.44 %
Unclassified	root	N/A	57.85 %

Name	Rank	Taxonomy	Distribution
Ectothiorhodospiraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Ectothiorhodospiraceae	4.96 %
Halothiobacillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Halothiobacillaceae	0.83 %
Unclassified	root	N/A	57.85 %

Name	Rank	Taxonomy	Distribution
Ectothiorhodospiraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Ectothiorhodospiraceae	4.96 %
Unclassified	root	N/A	57.85 %
unclassified Halothiobacillaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Halothiobacillaceae → unclassified Halothiobacillaceae	0.83 %

Name	Rank	Taxonomy	Distribution
Ectothiorhodospiraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Ectothiorhodospiraceae	4.96 %
Halothiobacillaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Halothiobacillaceae → unclassified Halothiobacillaceae → Halothiobacillaceae bacterium	0.83 %
Unclassified	root	N/A	57.85 %

Scaffold	Taxonomy	Length	IMG/M Link
(restricted) 3300022938\|Ga0233409_10027086	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1551	Open in IMG/M
(restricted) 3300022938\|Ga0233409_10059796	All Organisms → cellular organisms → Bacteria → Proteobacteria	1134	Open in IMG/M
(restricted) 3300024059\|Ga0255040_10503174	Not Available	519	Open in IMG/M
(restricted) 3300024062\|Ga0255039_10119584	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Ectothiorhodospiraceae	1063	Open in IMG/M
(restricted) 3300024338\|Ga0255043_10233751	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Halothiobacillaceae → unclassified Halothiobacillaceae → Halothiobacillaceae bacterium	633	Open in IMG/M
(restricted) 3300024519\|Ga0255046_10379584	Not Available	669	Open in IMG/M
(restricted) 3300024528\|Ga0255045_10013448	All Organisms → cellular organisms → Bacteria → Proteobacteria	2328	Open in IMG/M
(restricted) 3300024528\|Ga0255045_10109068	Not Available	1015	Open in IMG/M
(restricted) 3300024529\|Ga0255044_10368143	Not Available	596	Open in IMG/M
3300000124\|BS_KBA_SWE12_21mDRAFT_c10011999	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2785	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Engineered	Engineered	1.65%
Environmental	Environmental	97.52%
Host-Associated	Host-Associated	0.83%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	97.52%
Built Environment	Engineered → Built Environment	0.83%
Lab Enrichment	Engineered → Lab Enrichment	0.83%
Plants	Host-Associated → Plants	0.83%

Habitat	Taxonomy	Distribution
Canal	Engineered → Built Environment → Canal	0.83%
Defined Media	Engineered → Lab Enrichment → Defined Media	0.83%
Freshwater	Environmental → Aquatic → Freshwater	2.48%
Marine	Environmental → Aquatic → Marine	93.39%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.83%
Sediment	Environmental → Aquatic → Sediment	1.65%

Habitat	Taxonomy	Distribution
Anaerobic Media	Engineered → Lab Enrichment → Defined Media → Anaerobic Media	0.83%
Coastal	Environmental → Aquatic → Marine → Coastal	47.93%
Hydrothermal Vents	Environmental → Aquatic → Marine → Hydrothermal Vents	5.79%
Inlet	Environmental → Aquatic → Marine → Inlet	1.65%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	2.48%
Neritic Zone	Environmental → Aquatic → Marine → Neritic Zone	3.31%
Oceanic	Environmental → Aquatic → Marine → Oceanic	1.65%
Oil Seeps	Environmental → Aquatic → Marine → Oil Seeps	8.26%
Sediment	Environmental → Aquatic → Freshwater → Sediment	2.48%
Sediment	Environmental → Aquatic → Marine → Sediment	1.65%
Strait	Environmental → Aquatic → Marine → Strait	5.79%
Subtidal Zone	Environmental → Aquatic → Marine → Subtidal Zone	4.96%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.65%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.83%
Unclassified	Engineered → Built Environment → Canal → Unclassified	0.83%
Volcanic	Environmental → Aquatic → Marine → Volcanic	0.83%
Wetlands	Environmental → Aquatic → Marine → Wetlands	9.09%

Habitat	Taxonomy	Distribution
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	2.48%
Sediment	Environmental → Aquatic → Marine → Coastal → Sediment	47.93%
Sediment	Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment	5.79%
Sediment	Environmental → Aquatic → Marine → Subtidal Zone → Sediment	4.96%
Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment	1.65%
Sediment	Environmental → Aquatic → Marine → Wetlands → Sediment	0.83%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	8.26%
Unclassified	Environmental → Aquatic → Marine → Oil Seeps → Unclassified	8.26%
Unclassified	Environmental → Aquatic → Marine → Strait → Unclassified	5.79%
Unclassified	Environmental → Aquatic → Marine → Neritic Zone → Unclassified	3.31%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	2.48%
Unclassified	Environmental → Aquatic → Marine → Inlet → Unclassified	1.65%
Unclassified	Environmental → Aquatic → Marine → Sediment → Unclassified	1.65%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.65%
Unclassified	Environmental → Aquatic → Marine → Volcanic → Unclassified	0.83%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.83%
Unclassified	Engineered → Lab Enrichment → Defined Media → Anaerobic Media → Unclassified	0.83%
Unclassified	Engineered → Built Environment → Canal → Unclassified → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Aquatic Canal	Engineered → Built Environment → Canal → Unclassified → Unclassified → Aquatic Canal	0.83%
Deep Subsurface	Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface	0.83%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	1.65%
Marine	Environmental → Aquatic → Marine → Coastal → Sediment → Marine	13.22%
Marine	Environmental → Aquatic → Marine → Oil Seeps → Unclassified → Marine	8.26%
Marine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Marine	0.83%
Marine	Environmental → Aquatic → Marine → Wetlands → Sediment → Marine	0.83%
Marine Hydrothermal Vent	Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent	1.65%
Marine Sediment	Environmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment	19.01%
Marine Sediment	Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment	2.48%
Marine Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment	1.65%
Marine Sediment	Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment	1.65%
Marine Sediment	Engineered → Lab Enrichment → Defined Media → Anaerobic Media → Unclassified → Marine Sediment	0.83%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	8.26%
Pelagic Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine	3.31%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.83%
Seawater	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater	5.79%
Seawater	Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater	1.65%
Sediment	Environmental → Aquatic → Marine → Coastal → Sediment → Sediment	6.61%
Sediment	Environmental → Aquatic → Marine → Subtidal Zone → Sediment → Sediment	4.96%
Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment	2.48%
Sediment	Environmental → Aquatic → Marine → Sediment → Unclassified → Sediment	1.65%
Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment	1.65%
Worm Burrow	Environmental → Aquatic → Marine → Coastal → Sediment → Worm Burrow	9.09%

Visualization
Download SVG Download PNG Download CSV
Powered by ApexCharts

Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000124	Marine microbial communities from chronically polluted sediments in the Baltic Sea - site KBA sample SWE 12_21m	Environmental	Open in IMG/M
3300000242	Marine microbial communities from chronically polluted sediments in Tierra del Fuego: Site OR sample ARG 05_12.3m	Environmental	Open in IMG/M
3300001685	Oil polluted marine microbial communities from Coal Oil Point, Santa Barbara, California, USA - Sample 2	Environmental	Open in IMG/M
3300003988	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Muzzi_CordB_D2	Environmental	Open in IMG/M
3300004001	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - China_Galinas_PWC_D1	Environmental	Open in IMG/M
3300004010	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Muzzi_PWA_D1	Environmental	Open in IMG/M
3300004147	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - White_CordA_D2	Environmental	Open in IMG/M
3300005588	Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdDd47.1	Environmental	Open in IMG/M
3300005590	Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdAd47.2	Environmental	Open in IMG/M
3300005600	Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdAd47.1	Environmental	Open in IMG/M

Showing 1 to 10 of 66 entries

Previous1 2 3 4 5 6 7Next

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
BS_KBA_SWE12_21mDRAFT_100119993	3300000124	Marine	MHKLFAIGFAIYLVGDPGLSMLASFSEAREWILASALAFIAVPWVVSQIDN*
TDF_OR_ARG05_123mDRAFT_10073724	3300000242	Marine	MHKLFAIGVAMYLMGDPSLSVLASVSQSSELIVSSALALIMTPWVVSQIDN*
JGI24024J18818_100090903	3300001685	Marine	MHKLLAIGFAIYLAGDPSLSMLSMFNESKEVIVAFALALIAVPWVASQLDN*
JGI24024J18818_100195974	3300001685	Marine	MHKLFAIGVAIYLAGDPTLSMLASFSESRELIVASALAFIAVPWVVSQIDN*
Ga0055475_100043392	3300003988	Natural And Restored Wetlands	MHKLFAIGIAIYLVGDPSLSMLSSLSESRDLIISSVLALIAVPWVVSQFDN*
Ga0055450_100391161	3300004001	Natural And Restored Wetlands	MHKLFAIGIAIYLVGDPSLSMLSSFSESRDLIISSVLALIAVPWVVSQFDN*
Ga0055474_100838422	3300004010	Natural And Restored Wetlands	MHKLFAIGIGIYLAGDPSLSMLSAFNESKEVIVAIALALVAVPWVASQLDN*
Ga0055515_101674521	3300004147	Natural And Restored Wetlands	KEYEMHKLFAIGVLIYLVGDPGLSMLASFSEARELIVASALALIAVPWVVSQIDN*
Ga0070728_106957161	3300005588	Marine Sediment	MHKLFAIGLAIYLVGDPSLSMLASFSEARELIVASALAFIAVPWVVSQIDN*
Ga0070727_101189342	3300005590	Marine Sediment	MHKLLAIGFAIYLAGDPSLSMLSMFNESKEVIVALVLALIAVPWVASQLDN*
Ga0070727_102869031	3300005590	Marine Sediment	MHKLFAIGVAIYLLGDPSLSVLASVSESSELIVSSALAFIMTPWVVSQIDN*
Ga0070727_104280472	3300005590	Marine Sediment	MNKLYAIGVAIYLAGDPSLSMLSVFAESKEVIVSFAIALVITPWVTAQIDN*
Ga0070726_103097702	3300005600	Marine Sediment	MHKLFAICFAIYLAGDPSLSMLSMFNESKEVVVALALALIAVPWVASQLDN*
Ga0070722_100215584	3300005601	Marine Sediment	MHKIYAICLAIYLAGDPSLSMLSMFNESKEVILAFALALIAVPWVASQLDN*
Ga0070723_100134425	3300005612	Marine Sediment	MHKLFAIGVAIYLVGDPSLSMLASFSESRELIVASALAFIAVPWVV
Ga0070723_100661592	3300005612	Marine Sediment	MHKLFAICFAIYLAGDPSLSMLSMFNESKEVILAFALALIAVPWVASQLDN*
Ga0070723_103341942	3300005612	Marine Sediment	MHKLFAIGIGIYLAGDPSLSMLSVFAESKELIVAIAIALVAVPWVTSHIDN*
Ga0070723_103851322	3300005612	Marine Sediment	MHKLLAIGFAIYLAGDPSLSMLSMFSESKEVIVAFALALIAVPWVASQLDN*
Ga0070723_104742351	3300005612	Marine Sediment	MNKFYAIGVAIYLAGDPSLSMLSVFAESKEVIVSFAIALIATPWVTAQIDN*
Ga0070725_103355982	3300005920	Marine Sediment	MHKLFAIGVAIYLVGDPSLSMLASFSESRELIVASALAFIAVPWVVSQIDN*
Ga0099972_109977392	3300006467	Marine	MHKLFAIGVVIYLVGDPSLSMLASFSEARELIVASALAFIAVPWVVSHIDN*
Ga0099972_110353411	3300006467	Marine	MHKLFAIGIGIYLAGDPSLSMLSLFSESKELIVAVAIALVAVPWVTSQIDN*
Ga0099972_120290882	3300006467	Marine	LAIGVTIYLVGDPSLSLLSVFNESKEVIVAFTLALIAVPWVASQIDN*
Ga0099972_130535411	3300006467	Marine	MHKLLAIGFAIYLAGDPSLSMLSMFNESKEVIVAFAFALIAVP
Ga0102541_11394882	3300007102	Marine Sediment	AIGFAIYLAGDPSLSMLSIFNESKEVVVALALALIAVPWVASQLDN*
Ga0115369_101601082	3300008469	Marine Sediment	MHKLFAIGVAIYLAGDPTLSMLGSFSESRELIVASVLAFIAVPWVVSQIDN*
Ga0115369_103044352	3300008469	Marine Sediment	AIGVLIYLVGDPGLSMLASFSEARELIVASALALIAVPWVVSQIDN*
Ga0129286_102369022	3300009515	Sediment	MEYEMHKLFSIGVAIYLVGDPGLSLLASFSEAREFIIASVLAFIAVPWVVSQIDN*
Ga0129286_102971821	3300009515	Sediment	MHKLFAIGIAIYLAGDPTLSMLASFSESRELIVASALAFIAVPWVVSQIDN*
Ga0114931_100217665	3300009702	Deep Subsurface	MHKVFAIGVAIYLAGDPALGLLGPSSTGKDLIVASVLALIAVPWVIAYFDK*
Ga0136651_100297463	3300010330	Marine Hydrothermal Vent	MHKLFAIGVAIYLVGDPSLSLLAAFSGSRELIVASALAFIAVPWVVSQIDN*
Ga0118731_1022788889	3300010392	Marine	MHKLFAIGVAIYLVGDPSLSMLTSFSEARELIVASALAFIAVPWVVSHIDN*
Ga0118731_1046816142	3300010392	Marine	MIMHKLLAIGFAIYLAGDPSLSMLSMFNESKEVIVALVLALIAVPWVASQLDN*
Ga0118731_1046863522	3300010392	Marine	MIMHKLLAIGFAIYLAGDPSLSMLSMFSESKEVIVAFALALIAVPWVASQLDN*
Ga0118731_1049382481	3300010392	Marine	MIMHKLLAISLAIYLAGDPSLSMLSMFNESKEMIVALVLALIAVPWVASQIDN*
Ga0118731_1051996911	3300010392	Marine	MIMHKLFAIGFVIYLVGDPSLSMLSMFNESKEVIVALALALIAVPWVASQLDN*
Ga0118731_1075700902	3300010392	Marine	VGDEVQEKVMHKLFAIGVGIYLVGDPSLSMLSVFNESKEVIVAIALALVAVPWVTSQIDN
Ga0118731_1079047976	3300010392	Marine	MIMHKLFAICFAIYLAGDPSLSMLSMFNESKEVVVALALALIAVPWVASQLDN*
Ga0118731_1085795605	3300010392	Marine	MVMHKLFAIGIGIYLAGDPSLSMLSAFNESKEVIVAIALALVAVPWVASQLDN*
Ga0118731_1098930413	3300010392	Marine	MIMHKLLAIGFAIYLAGDPGLSMLSMFNESKEVIVALALALIAVPWVASQLDN*
Ga0118731_1118820063	3300010392	Marine	AIGIGIYLAGDPSLSMLSVFNESKEVIVALALALVAVPWVASQIDN*
Ga0118731_1140428491	3300010392	Marine	MIMHKLLAIGVTIYLVGDPSLSLLSVFNESKEVIVAFTLALIAVPWVASQIDN*
Ga0118731_1142859211	3300010392	Marine	MIMHKLFAICFAIYLAGDPSLSMLSIFNESKEVVVALALALIAVPWVASQFDN*
Ga0118733_1001518783	3300010430	Marine Sediment	MHKLFAIGVAIYLVGDPSLSMLASFSEARELIVASALAFIAVPWVVSHIDN*
Ga0118733_1002452324	3300010430	Marine Sediment	MHKLFAIGIGIYLAGDPSLSMLSVFNESKEVIVALALALVAVPWVASQIDN*
Ga0118733_1006850572	3300010430	Marine Sediment	MIMHKLLAIGFAIYLAGDPSLSMLSMFNESKEVIVALALALIAVPWVASQLDN*
Ga0118733_1007308861	3300010430	Marine Sediment	MHKLFAIGIGIYLAGDPSLSMLSLFSESKELIVAAAIALVAVPWVTSHIDN*
Ga0118733_1013038382	3300010430	Marine Sediment	MIMHKIYAICLAIYLAGDPSLSMLSMFNESKEVILAFALALIAVPWVASQLDN*
Ga0118733_1025606832	3300010430	Marine Sediment	MHKLFAIGIGIYLAGDPSLSVLSLFSESKELIVAVAIALVAVPWVTSQIDN*
Ga0118733_1030040602	3300010430	Marine Sediment	IYLVGDPSLSMLASFSESRELIVASALAFIAVPWVVSQIDN*
Ga0118733_1058849092	3300010430	Marine Sediment	MHKLFAIGVAIYLLGDPSLSVLASVSESSELIVSSALAFIMTPWVVSQI
Ga0164315_111373012	3300013099	Marine Sediment	MKQQEKVMHKLFAIGLGIYLAGDPSLSMLSVFSESKEMIVAAAIALVAVPWVTSQIDT*
Ga0164313_100196665	3300013101	Marine Sediment	MIMHKLFAICLAIYLAGDPGLSMLSMFNESKEVIVAFALALIAVPWVISQLDN*
Ga0164313_112433301	3300013101	Marine Sediment	EKVMHKLFAIGLGIYLAGDPSLSMLSVFSESKEMIVAAAIALVAVPWVTSQIDN*
Ga0120688_10286421	3300013293	Aquatic Canal	MHKLFAIGVLIYLVGDPGLSMLASFSEARELIVASALALIAVPWVVSQIDN*
Ga0194017_10206682	3300019696	Sediment	MHKLFAIGIAIYLAGDPTLSMLASFSESRELIVASALAFIAVPWVVSQIDN
Ga0194007_10177252	3300019697	Sediment	MHKLFAIGIGIYLAGDPSLSMLSLFSESKELIVAVAIALVAVPWVTSHIDN
Ga0193972_10368491	3300019717	Sediment	EYEMHKLFAIGVLVYLAGDPSLSMLASFSEAKELVVASALALIAVPWVVSQIDN
Ga0210330_10101672	3300021322	Estuarine	EYEMHRLFAIGFLVYLVGDPSLSMLASFSETRELIIASALALIAVPWVVSQIDN
Ga0224513_100101731	3300022220	Sediment	QLEEVMHKLFAIVIGIYLAGDPSLSMLSVFAESKELVVAVAIALVAVPWVTSQIDN
Ga0224513_104178091	3300022220	Sediment	MHKLLAIGFAIYLAGDPSLSMLSMFSESKEVIVAFALALIAVPWVASQLDN
Ga0210321_10569121	3300022384	Estuarine	MHKLLAIGFAIYLAGDPGLSMLSMFNESKEVVVAFALALIAVPWVASQIDN
Ga0212118_104570191	3300022552	Marine Hydrothermal Vent	MHKLFAIGVAIYLVGDPSLSLLAAFSGSRELIVASALAFIAVPWVVSQIDN
(restricted) Ga0233409_100270861	3300022938	Seawater	MHKLLAIGFAIYLAGDPSLSMLSMFNESKEVIVALALALIAVPWVASQLDN
(restricted) Ga0233409_100597962	3300022938	Seawater	MHKLFAIGVAIYLVGDPSLSMLALFSESRELIVASALAFIAVPWVVSQIDN
(restricted) Ga0255040_105031741	3300024059	Seawater	GIGIYLAGDPGLSMLSAFNESKEVIVAIALALVAVPWVASQLDN
(restricted) Ga0255039_101195841	3300024062	Seawater	MHKLFAIGIGIYLAGDPSLSMLSAFNESKEVIVAIALALVAV
(restricted) Ga0255043_102337512	3300024338	Seawater	MHKLFAIGIGIYLAGDPSLSMLSLFSESKELIVAVAIALVA
(restricted) Ga0255046_103795842	3300024519	Seawater	MHKLLAIGFAIYLAGDPGLSMLSMFNESKEVIVAFALALIAVPWVASQLDN
(restricted) Ga0255045_100134482	3300024528	Seawater	MHKLFAIGIGIYLAGDPSLSMLSAFNESKEVIVAIALALVAVPWVASQLDN
(restricted) Ga0255045_101090682	3300024528	Seawater	MHKLLAIGFAIYLAGDPGLSMLSMFNESKEVIVAFALALIAVPWVASHLDN
(restricted) Ga0255044_103681432	3300024529	Seawater	MHKLLAIGFAIYLAGDPSLSMLSMFNESKEVIVALVLALIAVPWVASQLDN
Ga0210110_11092882	3300025565	Natural And Restored Wetlands	MHKLFAIGIAIYLVGDPSLSMLSLFSESRDLIISSVLALIAVPWVVSQFDN
Ga0210085_10947771	3300025583	Natural And Restored Wetlands	AIGIAIYLVGDPSLSMLSSFSESRDLIISSVLALIAVPWVVSQFDN
Ga0210074_100007827	3300025599	Natural And Restored Wetlands	MHKLFAIGIAIYLVGDPSLSMLSSLSESRDLIISSVLALIAVPWVVSQFDN
Ga0210062_10582531	3300025797	Natural And Restored Wetlands	IYLVGDPSLSMLSSLSESRDLIISSVLALIAVPWVVSQFDN
Ga0210101_11298021	3300025814	Natural And Restored Wetlands	MHKLFAIGVTIYLVGDPSLSMLSSFSESRDLIIASVLALIAVPWVVSQFDN
Ga0210123_11592161	3300025823	Natural And Restored Wetlands	FAIGIAIYLVGDPSLSMLSSLSESRDLIISSVLALIAVPWVVSQFDN
Ga0209456_101804891	3300025883	Pelagic Marine	MHKLFAIGIGIYLAGDPSLSMLSVFAESKELIVAVAIALVAVPWVTSQIDN
Ga0209456_103077932	3300025883	Pelagic Marine	MNKLFAIGCAIYLAGDPSMSLLASFGDTRELIVASVLAFLATPWVVSQIDN
Ga0209456_103133972	3300025883	Pelagic Marine	NKLYAIGVAIYLAGDPSLSMLSVFAESKEVIASFAIALVITPWVTAQIDN
Ga0209567_102379761	3300025895	Pelagic Marine	MNKLYAIGVAIYLAGDPSLSMLSVFAESKEVIASFAIALVITPWVTAQIDN
Ga0209379_101038622	3300027758	Marine Sediment	MHKLFAICFAIYLAGDPSLSMLSMFNESKEVVVALALALIAVPWVASQLDN
Ga0209273_104204502	3300027790	Marine Sediment	MHKLFAIGVAIYLLGDPSLSVLASVSESSELIVSSALAFIMTPWVVSQIDN
Ga0209633_100409841	3300027822	Marine	MHKLFAICFAIYLAGDPGLSMLSMFNESKEVIVAFALALIAVP
Ga0209633_101009175	3300027822	Marine	EVQEMIMHKLFAICFAIYLAGDPGLSMLSMFNESKEVIVAFALALIAVPWVISQVDN
Ga0209271_104278592	3300027845	Marine Sediment	IGFAIYLAGDPSLSMLSMFNESKEVIVALVLALIAVPWVASQLDN
Ga0209013_100151163	3300027858	Marine	MHKLFAIGVAIYLAGDPTLSMLASFSESRELIVASALAFIAVPWVVSQIDN
Ga0209013_100426602	3300027858	Marine	MHKLLAIGFAIYLAGDPSLSMLSMFNESKEVIVAFALALIAVPWVASQLDN
Ga0209013_100447962	3300027858	Marine	MHKLFAICFAIYLAGDPGLSMLSMFNESKEVIVAFALALIAVPWVISQVDN
Ga0209013_104265052	3300027858	Marine	MHKLFAIGAAIYLVGDPTLSMLTVFSGSRELIVASALAFIAVPWVVSQIDN
Ga0209013_106722801	3300027858	Marine	MHKLFAIGVAIYLVGDPSLSMLASFNESRELIVASALAFIAVPWVISQIDN
Ga0209013_106786122	3300027858	Marine	MRKLLAIGFAIYLAGDPSLSMLSMFNESKEVIVAFALALIA
Ga0209536_1001055543	3300027917	Marine Sediment	MHKLFAIGVLVYLAGDPSLSMLASFSEAKEMVVASALALIAVPWVVSQIDN
Ga0209536_1010167032	3300027917	Marine Sediment	MHKLFAIGIAIYLAGDPTLSMLSSFSESRELIVASALAFIAVPWVVSQIDN
Ga0265306_103678712	3300028598	Sediment	MHKLFSIGVAIYLVGDPGLSLLASFSEARELIIASVLAFIAVPWVVSQ
Ga0265309_102809303	3300028599	Sediment	KLYAIGVAVYLAGDPSLSMLSVFAESKEVIASFAIALVITPWVTAQIDN
Ga0265309_104489502	3300028599	Sediment	MNKLLAIGAVIYLVGDPSLSMLASFNEMKEVIVASVLAFIAAPWVVSQIDN
Ga0265303_100811792	3300028600	Sediment	MNKLYAIGVAVYLAGDPSLSMLSVFAESKEVIASFAIALVITPWVTAQIDN
Ga0265303_101493841	3300028600	Sediment	MHKLFSIGVAIYLVGDPGLSLLASFSEARELIIASVLAFIAVPWVVSQIDN
Ga0265303_101520483	3300028600	Sediment	MHKLYAIGIGIYLAGDPSLSMLSVFAESKELIVAVAIALVAVPWV
Ga0316575_105101921	3300031665	Rhizosphere	MHKFFAIGVAIYLLGDPSLSMLSSFSESRELLIASALAFIAVPWVVSQIDN
Ga0316201_100176942	3300032136	Worm Burrow	MHKLFAIGVLIYLVGDPGLSMLASFSEARELIVASALALIAVPWVVSQIDN
Ga0316201_100743462	3300032136	Worm Burrow	MHKLFAIGVLVYLAGDPSLSMLASFSEAKELVVASALALIAVPWVVSQIDN
Ga0316201_115279202	3300032136	Worm Burrow	MHKLFSIGVAIYLVGDPGLSLLASFSEAREFIIASVLAFIAVPWVVSQIDN
Ga0316187_100373125	3300032231	Worm Burrow	MHKLFAIVIGIYLAGDPSLSMLSVFAESKELIVAVAIALVAVPWVTSQIDN
Ga0316187_101480003	3300032231	Worm Burrow	MHKVFAIGVLIYLVGDPNLSMLASFSEAREMIVASALALIAVPWVVSQIDN
Ga0316198_100579282	3300032251	Sediment	MHKLFAIGVLIYLVGDPGLSLLASFSEARELIVASALALIAVPWVVSQIDN
Ga0316198_100698463	3300032251	Sediment	MEYEMNKLFAIGIAIYLVGDPGLSLLAPFSEARELIIASALAFIAVPWVVSQIDN
Ga0316196_101574252	3300032252	Sediment	MHKLFAIGIGIYLAGDPSLSLLSVFAESKELIVAFAVALVAVPWVTSQIDN
Ga0316191_100457579	3300032258	Worm Burrow	LFAIGVLIYLVGDPGLSMLASFSEARELIVASALALIAVPWVVSQIDN
Ga0316191_100648501	3300032258	Worm Burrow	MHKLFAIGIGIYLAGDPSLSMLSLFSESKELIVAVAIALVAVPWVTSQIDN
Ga0316191_106279011	3300032258	Worm Burrow	LFAIGVLIYLVGDPGLSMLASFSEARELIVASALALIAVPWVISQIDN
Ga0316191_110716331	3300032258	Worm Burrow	MHKIFAIGVLVYLVGDPSLSMLALFSESGELIIASALALIAVPWVVSQIDN
Ga0316190_109745962	3300032259	Worm Burrow	MHKLFAIGVAIYLVGDPSLSMLTSFSEARELIVASALAFIAVPWVVSHIDN
Ga0316194_102699501	3300032262	Sediment	LIYLVGDPGLSLLASFSEARELIVASALALIAVPWVVSQIDN
Ga0316189_100669955	3300032272	Worm Burrow	MHKLLAICAAIYLAGDPSLSLLSVFNESKEVIVAFTLALIAVPWVASQIDN
Ga0316197_100161786	3300032273	Sediment	MNKLFAIGIAIYLVGDPGLSLLAPFSEARELIIASALAFIAVPWVVSQIDN
Ga0316193_101070833	3300033429	Sediment	MHKLFAIGVLIYLVGDPGLSMLASFSEARELIVASALALIAVPWVISQIDN
Ga0316193_103102121	3300033429	Sediment	MHKLFAVGIGIYLAGDPSLSMLSAFNESKEVIVAIALALVAVPWVASQLDN
Ga0316193_107571552	3300033429	Sediment	MHKVFAIGVLIYLVGDPDLSMLASFSEARELIVASALALIAVPWVVSQIDN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters