Metagenome Family F072115

Basic Information
Family ID	F072115
Family Type	Metagenome
Number of Sequences	121
Average Sequence Length	43 residues
Representative Sequence	MTHTTPTLLEVLSYLTDPTFTSVVVLVVGTFAALTAINKIGGAR
Number of Associated Samples	61
Number of Associated Scaffolds	121

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	38.02 %
% of genes near scaffold ends (potentially truncated)	19.01 %
% of genes from short scaffolds (< 2000 bps)	76.86 %
Associated GOLD sequencing projects	55
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.54

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Unclassified (75.207 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater (34.711 % of family members)
Environment Ontology (ENVO)	Unclassified (52.066 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (41.322 % of family members)

Multiple Sequence Alignments

Select alignment to view:

Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54 1Qinghai_72970 2QL_na_7816100 3QLA_00633080 4JGI24766J26685_100171354 5metazooDRAFT_12436251 6metazooDRAFT_12966012 7metazooDRAFT_13721892 8B570J29032_1091274052 9B570J29032_1092392912 10B570J29032_1092622763 11B570J29032_1093554952 12B570J40625_1006378472 13Ga0079957_10527736 14Ga0079957_13720652 15Ga0070749_102914973 16Ga0070749_105912282 17Ga0103958_10941723 18Ga0099851_10616144 19Ga0099851_10863125 20Ga0099849_12250902 21Ga0099848_10239416 22Ga0099848_12271941 23Ga0099848_12376332 24Ga0099848_12484023 25Ga0099848_12955902 26Ga0099848_12983521 27Ga0099846_11009432 28Ga0099846_12276122 29Ga0099846_12667273 30Ga0099850_12042472 31Ga0099850_12069271 32Ga0099850_12981662 33Ga0114876_101604610 34Ga0129333_104330312 35Ga0129333_106263963 36Ga0129333_106339113 37Ga0129333_111006163 38Ga0129333_112775052 39Ga0129333_113926492 40Ga0129333_116475962 41Ga0129336_102417952 42Ga0129336_102950982 43Ga0119931_10372133 44Ga0119951_10425595 45Ga0172373_101166793 46Ga0181358_11949372 47Ga0181358_12588412 48Ga0181359_10139326 49Ga0181359_10489955 50Ga0181359_10582774 51Ga0181359_10774072 52Ga0207193_11155164 53Ga0208091_10189202 54Ga0208089_10059142 55Ga0208855_10021356 56Ga0208599_10055254 57Ga0208486_10180904 58Ga0212031_10719822 59Ga0181354_10154184 60Ga0181354_11267442 61Ga0196905_11073103 62Ga0214921_1002190414 63Ga0208160_11100812 64Ga0208795_10495612 65Ga0208019_12059412 66Ga0209972_100985294 67Ga0209229_100043004 68Ga0209229_100212977 69Ga0209229_100671611 70Ga0209229_101158724 71Ga0209229_101336373 72Ga0209229_102745682 73Ga0209229_102961103 74Ga0119944_10185072 75Ga0119945_10312012 76Ga0315900_1001854412 77Ga0315900_102043455 78Ga0315900_102984012 79Ga0315909_104184013 80Ga0334980_0000446_597_731 81Ga0334980_0047520_370_504 82Ga0334980_0093516_301_459 83Ga0334982_0145100_231_389 84Ga0334982_0153682_346_480 85Ga0334982_0212503_147_281 86Ga0334994_0336132_632_751 87Ga0334994_0384450_362_481 88Ga0335003_0000132_5270_5395 89Ga0334986_0275005_554_673 90Ga0334986_0390027_304_423 91Ga0334998_0253038_621_758 92Ga0334987_0135336_1448_1582 93Ga0334995_0003686_1310_1471 94Ga0334995_0052434_385_543 95Ga0334995_0068892_2408_2527 96Ga0334995_0330410_2_115 97Ga0310130_0018543_1294_1452 98Ga0310130_0214535_459_596 99Ga0335020_0001322_3736_3855 100Ga0335020_0008147_3507_3632 101Ga0335010_0141125_2_112 102Ga0335010_0201539_979_1098 103Ga0335010_0544424_1_144 104Ga0335025_0015912_2171_2290 105Ga0335025_0040230_2937_3074 106Ga0335027_0016249_2657_2776 107Ga0335027_0026530_1226_1363 108Ga0335027_0066274_2013_2132 109Ga0335027_0091752_2205_2336 110Ga0335027_0135042_187_321 111Ga0335027_0698584_53_211 112Ga0335027_0822801_98_235 113Ga0335027_0857491_1_108 114Ga0335031_0169035_3_131 115Ga0335031_0227466_1117_1248 116Ga0335036_0025060_3361_3480 117Ga0335036_0653907_173_292 118Ga0335036_0820252_309_467 119Ga0335066_0205701_517_636 120Ga0335066_0334552_1_120 121Ga0335016_0271292_2_136
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54 1Qinghai_72970 2JGI24766J26685_100171354 3metazooDRAFT_12436251 4metazooDRAFT_12966012 5B570J29032_1091274052 6B570J29032_1092392912 7B570J29032_1093554952 8B570J40625_1006378472 9Ga0079957_10527736 10Ga0099851_10616144 11Ga0099848_12955902 12Ga0099848_12983521 13Ga0129333_104330312 14Ga0129333_106339113 15Ga0119931_10372133 16Ga0181354_10154184 17Ga0209229_100212977 18Ga0209229_100671611
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44 1Ga0214921_1002190414 2Qinghai_72970 3JGI24766J26685_100171354 4metazooDRAFT_12436251 5metazooDRAFT_13721892 6B570J29032_1091274052 7B570J40625_1006378472 8Ga0079957_13720652 9Ga0070749_102914973 10Ga0070749_105912282 11Ga0103958_10941723 12Ga0099848_10239416 13Ga0114876_101604610 14Ga0129333_106263963 15Ga0129333_106339113 16Ga0129333_116475962 17Ga0119931_10372133 18Ga0119951_10425595 19Ga0172373_101166793 20Ga0181358_12588412 21Ga0181359_10582774 22Ga0208855_10021356 23Ga0212031_10719822 24Ga0181354_10154184 25Ga0209229_100212977 26Ga0209229_100671611 27Ga0119944_10185072 28Ga0119945_10312012 29Ga0315900_102043455 30Ga0315909_104184013 31Ga0334994_0384450_362_481 32Ga0310130_0018543_1294_1452 33Ga0335010_0201539_979_1098 34Ga0335025_0015912_2171_2290 35Ga0335025_0040230_2937_3074 36Ga0335027_0135042_187_321 37Ga0335036_0820252_309_467 38Ga0335066_0205701_517_636
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Neighboring Clusters of Orthologous Genes (COGs)

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 44.44% β-sheet: 0.00% Coil/Unstructured: 55.56%
Feature Viewer
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Structure Viewer
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.54
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.54
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Pfam ID	Name	% Frequency in 121 Family Scaffolds
PF12728	HTH_17	57.85
PF13392	HNH_3	4.13
PF00145	DNA_methylase	3.31
PF14090	HTH_39	2.48
PF00589	Phage_integrase	1.65
PF01807	zf-CHC2	0.83
PF03796	DnaB_C	0.83
PF13730	HTH_36	0.83
PF01507	PAPS_reduct	0.83
PF08308	PEGA	0.83

COG ID	Name	Functional Category	% Frequency in 121 Family Scaffolds
COG0270	DNA-cytosine methylase	Replication, recombination and repair [L]	3.31
COG0305	Replicative DNA helicase	Replication, recombination and repair [L]	0.83
COG0358	DNA primase (bacterial type)	Replication, recombination and repair [L]	0.83
COG1066	DNA repair protein RadA/Sms, contains AAA+ ATPase domain	Replication, recombination and repair [L]	0.83

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	24.79 %
Unclassified	root	N/A	75.21 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	15.70 %
Unclassified	root	N/A	75.21 %
Viruses	superkingdom	All Organisms → Viruses	9.09 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	15.70 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	9.09 %
Unclassified	root	N/A	75.21 %

Name	Rank	Taxonomy	Distribution
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	9.09 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	4.96 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	8.26 %
Unclassified	root	N/A	75.21 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.65 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2.48 %
Unclassified	root	N/A	75.21 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	9.09 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	8.26 %

Name	Rank	Taxonomy	Distribution
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	2.48 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	9.09 %
Opitutae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	4.13 %
Rhodobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	1.65 %
Unclassified	root	N/A	75.21 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	4.13 %

Name	Rank	Taxonomy	Distribution
Alcaligenaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae	2.48 %
environmental samples	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples	9.09 %
Opitutales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales	4.13 %
Roseobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae	1.65 %
Unclassified	root	N/A	75.21 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	4.13 %

Name	Rank	Taxonomy	Distribution
Opitutaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae	4.13 %
Roseobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae	1.65 %
Unclassified	root	N/A	75.21 %
unclassified Alcaligenaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae → unclassified Alcaligenaceae	2.48 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	9.09 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	4.13 %

Name	Rank	Taxonomy	Distribution
Alcaligenaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae → unclassified Alcaligenaceae → Alcaligenaceae bacterium	2.48 %
Opitutaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae	4.13 %
Roseobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae	1.65 %
Unclassified	root	N/A	75.21 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	9.09 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	4.13 %

Visualization
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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
(restricted) 3300013131\|Ga0172373_10116679	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1973	Open in IMG/M
2020350000\|Qingha_contig18513	Not Available	568	Open in IMG/M
2022920000\|QLn_FQAYR3Y02QV8O7	Not Available	516	Open in IMG/M
2199352018\|QLA_contig20795.20795	Not Available	715	Open in IMG/M
3300002161\|JGI24766J26685_10017135	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae → unclassified Alcaligenaceae → Alcaligenaceae bacterium	1863	Open in IMG/M
3300002202\|metazooDRAFT_1243625	Not Available	561	Open in IMG/M
3300002203\|metazooDRAFT_1296601	Not Available	625	Open in IMG/M
3300002212\|metazooDRAFT_1372189	Not Available	668	Open in IMG/M
3300002408\|B570J29032_109127405	Not Available	604	Open in IMG/M
3300002408\|B570J29032_109239291	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	649	Open in IMG/M

Showing 1 to 10 of 121 entries

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Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	98.35%
Terrestrial	Environmental → Terrestrial	1.65%

Habitat	Taxonomy	Distribution
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	1.65%
Freshwater	Environmental → Aquatic → Freshwater	70.25%
Marine	Environmental → Aquatic → Marine	25.62%
Non-Marine Saline And Alkaline	Environmental → Aquatic → Non-Marine Saline And Alkaline	2.48%

Habitat	Taxonomy	Distribution
Coastal	Environmental → Aquatic → Marine → Coastal	25.62%
Drinking Water	Environmental → Aquatic → Freshwater → Drinking Water	2.48%
Lake	Environmental → Aquatic → Freshwater → Lake	39.67%
Lentic	Environmental → Aquatic → Freshwater → Lentic	24.79%
Saline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline	2.48%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	3.31%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified	1.65%

Habitat	Taxonomy	Distribution
Epilimnion	Environmental → Aquatic → Freshwater → Lentic → Epilimnion	5.79%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	0.83%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	38.84%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	25.62%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	19.01%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	3.31%
Unclassified	Environmental → Aquatic → Freshwater → Drinking Water → Unclassified	2.48%
Unclassified	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified	2.48%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified	1.65%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic → Freshwater → Drinking Water → Unclassified → Aquatic	1.65%
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	18.18%
Drinking Water Treatment Plant	Environmental → Aquatic → Freshwater → Drinking Water → Unclassified → Drinking Water Treatment Plant	0.83%
Fracking Water	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water	1.65%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	34.71%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater	4.96%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater	3.31%
Freshwater	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater	3.31%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	0.83%
Freshwater And Sediment	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment	6.61%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	7.44%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	1.65%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment	0.83%
Freshwater To Marine Saline Gradient	Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient	7.44%
Lake	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Lake	2.48%
Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake	1.65%
Saline Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water	2.48%

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2020350000	Saline water microbial communities from Qinghai Lake, Tibetan Plateau - High mountain lake (assembled)	Environmental	Open in IMG/M
2022920000	Saline water microbial communities from Qinghai Lake, Tibetan Plateau - High mountain lake (unassembled)	Environmental	Open in IMG/M
2199352018	Saline water microbial communities from Qinghai Lake, Tibetan Plateau -Sample 11630	Environmental	Open in IMG/M
3300002161	Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA	Environmental	Open in IMG/M
3300002202	Freshwater microbial communities from San Paulo Zoo lake, Brazil - SEP 2012	Environmental	Open in IMG/M
3300002203	Freshwater microbial communities from San Paulo Zoo lake, Brazil - MAR 2013	Environmental	Open in IMG/M
3300002212	Freshwater microbial communities from San Paulo Zoo lake, Brazil - JAN 2013	Environmental	Open in IMG/M
3300002408	Freshwater microbial communities from Lake Mendota, WI, sample - 15JUL2010 deep hole epilimnion (Lake Mendota Combined assembly, ASSEMBLY_DATE=20140123)	Environmental	Open in IMG/M
3300002835	Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)	Environmental	Open in IMG/M
3300005805	Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA	Environmental	Open in IMG/M

Showing 1 to 10 of 61 entries

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Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
Qinghai_72970	2020350000	Saline Water	FTTTMTNPTPLEVLSYLTDGTFVTVVAVLVIGFIILNALNRIGGRR
QL_na_7816100	2022920000	Saline Water	MEAATVWRFTTTMTNPTPLEVLSYLTDGTFVTVVAVLVIGFIILNALNRIGG
QLA_00633080	2199352018	Saline Water	MTNPTPLEVLSYLTDGTFVTVVAVLVIGFIILNALNRIGGRR
JGI24766J26685_100171354	3300002161	Freshwater And Sediment	MTTPTLLEVLSYITDPVFTTVIVITIGTFAALNAINKIGGAR*
metazooDRAFT_12436251	3300002202	Lake	EVLSYLTDPVFTTVVVLTIGTFAALQLINKLGGAR*
metazooDRAFT_12966012	3300002203	Lake	MSTLEVLSYLTDPVFTAVVALTIGTFVALEAINKMGGRP*
metazooDRAFT_13721892	3300002212	Lake	MSTLEVLSYLTDPVFTAVVALTIGTFVALEAINKIGGRP*
B570J29032_1091274052	3300002408	Freshwater	MSALEVFSYLTDTTFTTVVLLTIGTFAALQFINKIGGAR*
B570J29032_1092392912	3300002408	Freshwater	MSALEVLSYLTDPVFCTVVVLSVGTFVALEIINKIGGAR*
B570J29032_1092622763	3300002408	Freshwater	MTPHHTPTLLEVLSYLTDPVFTTVIVLTIGTFAALQFINKIGGAR*
B570J29032_1093554952	3300002408	Freshwater	MTNTTHTTLEVLSYLADPTFTVVVVLVVGAFAALTAINKIGGAR*
B570J40625_1006378472	3300002835	Freshwater	MSALEALSYLTDATFVSLVVLLVIGFIALNAINKIGGRR*
Ga0079957_10527736	3300005805	Lake	MTPHHTPTLLEVLSYLTDPVFTTVVVLTIGTFAALQFINRIGGAQ*
Ga0079957_13720652	3300005805	Lake	MTHHTTPTLLEVLSYITDPVFTTVVVLTVGTFAALTAINRIGGAR*
Ga0070749_102914973	3300006802	Aqueous	MTHHTTPTMLEVLSYLTDPTFTTVVVLVVGTYAALQAANRIGGAK*
Ga0070749_105912282	3300006802	Aqueous	MTHHTTPTLLEVLSYLTDPTFTAVVVLVVGTYAALEAVNRIGGAR*
Ga0103958_10941723	3300007212	Freshwater Lake	MTNTTPTLLEVLSYLTDPVFTTVVVLAVGTFAALNAINRIGGAR*
Ga0099851_10616144	3300007538	Aqueous	MKHHTTPTLLEVLSYLTDATFTSVVVATVAFAFTLQVINRIGGAK*
Ga0099851_10863125	3300007538	Aqueous	SMTHTTPTMLEVLSYLTDATFTSVVVATIAFAFTLQAINRIGGAR*
Ga0099849_12250902	3300007539	Aqueous	MTHHTTPTLLEVMSYLTDATFTSVVVATIAFAFTLQAINRIGGAK*
Ga0099848_10239416	3300007541	Aqueous	MSALEVLSYLTDSTFTTVVVLTISTFAALQFIERIGGAK*
Ga0099848_12271941	3300007541	Aqueous	QALSMTHHTTPTLLEVASYLTDATFTSVVVATIAFAFTLQAINRIGGAK*
Ga0099848_12376332	3300007541	Aqueous	MTHHTTPTLLEVLSYPTDATFTSVVVATIAFAFTLQAINRIGGAR*
Ga0099848_12484023	3300007541	Aqueous	QALSMTHHTTPTLLEVASYLTDATFTSVVVATIAFAFTLQVINRIGGAR*
Ga0099848_12955902	3300007541	Aqueous	MTHHTPTMLEVLSYLTDPTFTAVVVLVVGTYAALEAVNRIGGAK*
Ga0099848_12983521	3300007541	Aqueous	MTHHTTPTLLEVASYLTDATFTSVVVATIAFAFTLQ
Ga0099846_11009432	3300007542	Aqueous	MSALEVFSYLTDSTFTTVVVLTISTFAALQFIERIGGAK*
Ga0099846_12276122	3300007542	Aqueous	MTHHTTPTLLEVLSYLTDATFTSVVVATIAFAFTLQAINRIGGAR*
Ga0099846_12667273	3300007542	Aqueous	MTHTTPTLLEVLSYLTDATFTSVVVATIAFAFTLQAINRIGGAR*
Ga0099850_12042472	3300007960	Aqueous	MTHHTTPTPLEVMSYLTDATFTSVVVATIAFAFTLQAISRIGGAK*
Ga0099850_12069271	3300007960	Aqueous	TTSTPLEVLSYLTDATFTSVVVATIAFAFTLQAINRIGGAR*
Ga0099850_12981662	3300007960	Aqueous	MTHHTTPTMLEVLSYLTDPTFTAVVVLVVGTYAALEAVNRIGGAK*
Ga0114876_101604610	3300008448	Freshwater Lake	MTQSTLLEVLSYLTDPVFTTVVVLVVGTFAALNAINRIGGAK*
Ga0129333_104330312	3300010354	Freshwater To Marine Saline Gradient	MPTDAIRLSMTHTTPTLLEVLSYLTDPTFTSVVVLVVGTFAALTAINRIGGRP*
Ga0129333_106263963	3300010354	Freshwater To Marine Saline Gradient	MPSFAFLMTPHHTPTLLEVLSYLTDPVFTTVVVLTIGTFAALTAIHKIGGAR*
Ga0129333_106339113	3300010354	Freshwater To Marine Saline Gradient	MPSFAKTLMHTTHTTPLEVLSYLTDPVFTTVVVLVVGAFAALEAINRIGGAK*
Ga0129333_111006163	3300010354	Freshwater To Marine Saline Gradient	MTHHTTPTLLEVLSYLTDTTFTSVVVATIAFAFTLQ
Ga0129333_112775052	3300010354	Freshwater To Marine Saline Gradient	MTHHTTPTLLEVLSYLTDPVFTTVIVLTIGTFAALLFINKIGGAR*
Ga0129333_113926492	3300010354	Freshwater To Marine Saline Gradient	MTNTTPTLLEVLGYITDPVFTTVVVLTVGTFAALTAINRIGGRP*
Ga0129333_116475962	3300010354	Freshwater To Marine Saline Gradient	MSALEVFSYLTDPTFTAVIVLTIGTFVALQFIDRIGGAQ*
Ga0129336_102417952	3300010370	Freshwater To Marine Saline Gradient	MPSFAFLMTHHTTPTLLEVLSYLTDPVFTTVVVLTVGTFAALTAINRIGGRP*
Ga0129336_102950982	3300010370	Freshwater To Marine Saline Gradient	MPRFAFLMTPHHTPTLLEVLSYLTDPVFTTVIVLTIGTFAALQFINRIGGAQ*
Ga0119931_10372133	3300011984	Drinking Water Treatment Plant	MTSLEVLSYLTDSTFTTVVILVVGTFAALQAIHRIGGAK*
Ga0119951_10425595	3300012000	Freshwater	MTHTTHTTLEVLSILTDPTFTAVVVLVVGTFAALTAIHKIGGAR*
(restricted) Ga0172373_101166793	3300013131	Freshwater	MTPLEVLSYLTDTTFTTIVLLVVGTFVALEAINKIGGAK*
Ga0181358_11949372	3300017774	Freshwater Lake	MTPTPLEVLSYLTDATFMSLVVLLVIGFIALSAINKIGGRR
Ga0181358_12588412	3300017774	Freshwater Lake	MTHPTPLEVLSYLTDATFVSLVVLLVVGFIALNAINKIGGRR
Ga0181359_10139326	3300019784	Freshwater Lake	MTPTPLEVLSYLTDATFVSLVVLLVVGFVALNAINKIGGQR
Ga0181359_10489955	3300019784	Freshwater Lake	MTPTPLEVISYLTDATFVSLVVLLVIGFIALNAINKIGGRR
Ga0181359_10582774	3300019784	Freshwater Lake	MSALEVLSYLTDPVFCTVVALAVGTFVALEIINKIGGAR
Ga0181359_10774072	3300019784	Freshwater Lake	MTPHHTPTLLEVLSYLTDPVFATVIVLTIGTFVALEIINKIGGAR
Ga0207193_11155164	3300020048	Freshwater Lake Sediment	MTPTPLEVLSYLTDATFVSLVVLLVIGFIALNAINKIGGRR
Ga0208091_10189202	3300020506	Freshwater	MSALEVLSYLTDPVFCTVVVLSVGTFVALEIINKIGGAR
Ga0208089_10059142	3300020543	Freshwater	MSALEALSYLTDATFVSLVVLLVIGFIALNAINKIGGRR
Ga0208855_10021356	3300020553	Freshwater	MTNTTHTTLEVLSYLADPTFTVVVVLVVGAFAALTAINKIGGAR
Ga0208599_10055254	3300020554	Freshwater	MSALEVFSYLTDTTFTTVVLLTIGTFAALQFINKIGGAR
Ga0208486_10180904	3300020556	Freshwater	MSALEVLSYLTDPVFCTVVVLSVGTFVALEIINKIGGAK
Ga0212031_10719822	3300022176	Aqueous	QRHQASMTHHTTPTLLEVMSYLTDATFTSVVVATIAFAFTLQAINRIGGAK
Ga0181354_10154184	3300022190	Freshwater Lake	MPRFAFLMTPHHTPTLLEVLSYLTDPVFATVIVLTIGTFVALEIINKIGGAR
Ga0181354_11267442	3300022190	Freshwater Lake	MTPTPLEVLSYLTDATFVSLVVLLVIGFIAINAINKIGGRR
Ga0196905_11073103	3300022198	Aqueous	MTHHTTPTVLEVMSYLTDATFTSVVVATIAFAFTLQVINRIGGAR
Ga0214921_1002190414	3300023174	Freshwater	MTHTTPTLLEVLSYLTDPTFTSVVVLVVGTFAALTAINKIGGAR
Ga0208160_11100812	3300025647	Aqueous	MTHTTPTLLEVLSYLTDATFTSVVVATIAFAFTLQAINRIGGAR
Ga0208795_10495612	3300025655	Aqueous	MTHHTTPTLLEVLSYLTDATFTSVVVATIAFAFTLQAINRIGGAR
Ga0208019_12059412	3300025687	Aqueous	MTHTTPTMLEVLSYLTDATFTSVVVATIAFAFTLQAINRIGGAR
Ga0209972_100985294	3300027793	Freshwater Lake	MTQPTLLEVLSYITDPVFTTVVVLTIGTFAALNAINKIGGAK
Ga0209229_100043004	3300027805	Freshwater And Sediment	MTTPTLLEVLSYITDPVFTTVIVITIGTFAALNAINKIGGAR
Ga0209229_100212977	3300027805	Freshwater And Sediment	MSTLEVLTYLTDSTFTSVVVVAVATFAALQAIHRIGGQR
Ga0209229_100671611	3300027805	Freshwater And Sediment	ETTKHTTSMTQPTLLEVLSYITDPVFTTVVVLTIGTFAALNAINRIGGSK
Ga0209229_101158724	3300027805	Freshwater And Sediment	MTPHHTPTLLEVLSYLTDPVFTTVIVLTIGTFAALQFINKIGGAR
Ga0209229_101336373	3300027805	Freshwater And Sediment	MTTPTLLEVLSYITDPVFTTVVVLAVGTFAALNAINRIGGAK
Ga0209229_102745682	3300027805	Freshwater And Sediment	MTQSTLLEVLSYLTDPVFTTVVVLVVGTFAALNAINRIGGAK
Ga0209229_102961103	3300027805	Freshwater And Sediment	MTQPTLLEVLSYLTDPVFATVVVLTIGTFAALNAINKIGGAK
Ga0119944_10185072	3300029930	Aquatic	MSTLEVLSYLTDPTFTTVLLLVFGTFGALQAIHRIGGAK
Ga0119945_10312012	3300029933	Aquatic	MSTLEVLSYLTDSTFTTVVIFVVGAFAALNAIHKIGGAK
Ga0315900_1001854412	3300031787	Freshwater	MTQPTLLEVLSYLTDTVFTTVVVLTIGTFAALNAINKIGGAK
Ga0315900_102043455	3300031787	Freshwater	MTPHHTPTLLEVMSYLTDPVFTTVVVLTVGTFAALQFINKIGGAR
Ga0315900_102984012	3300031787	Freshwater	MTQPTLLEVLSYITDPVFTTVVVITIGTFAALNAINRIGGAK
Ga0315909_104184013	3300031857	Freshwater	MTIIEALTYLTDSTFTSVVVVAVATFAALQAIHRIGGRQ
Ga0334980_0000446_597_731	3300033816	Freshwater	MTNTTHTTLEVLSYLTDPTFTVVVVLVVGAFAALTAINKIGGAR
Ga0334980_0047520_370_504	3300033816	Freshwater	MTNTTHTLLEVLSYLTDPTFTVVVVLVVGAFAALTAINKIGGAR
Ga0334980_0093516_301_459	3300033816	Freshwater	MPSFAFSMTHHTTPTLLEVLSYITDPVFTTVVVLTVGTFAALQFINKIGGAK
Ga0334982_0145100_231_389	3300033981	Freshwater	MPSFAFLMTPHHTPTLLEVLSYLTDPVFTTVIVLTIGTFAALQFINKIGGAR
Ga0334982_0153682_346_480	3300033981	Freshwater	MTNTTPTTLEVLSYLTDPTFTAVVVLVVGTFAALTAINKIGGAR
Ga0334982_0212503_147_281	3300033981	Freshwater	MTNTTPTLLEVLGYLTDPVFTTVIVLTIGTFAALQFINKIGGAR
Ga0334994_0336132_632_751	3300033993	Freshwater	MSALEALSYLTDTTFTTVVLLTIGTFAALQFINKIGGAR
Ga0334994_0384450_362_481	3300033993	Freshwater	MSALEVFSYLTDPVFCTVVVLSVGTFVALELINKIGGAR
Ga0335003_0000132_5270_5395	3300033995	Freshwater	MTPTPLEVLSYLTDATFMSLTGLLVVGFILLNAINKIGGRR
Ga0334986_0275005_554_673	3300034012	Freshwater	MSALEVFSYLTDPVFCTVVVLAVGTFVALEIINKIGGAR
Ga0334986_0390027_304_423	3300034012	Freshwater	MSALEVLSYLTDATFTTVVLLTIGTFAALQFINRIGGAK
Ga0334998_0253038_621_758	3300034019	Freshwater	MTHHTTPTLLEVLSYLTDPVFTTVAVLTIGTFAALQFINKIGGAR
Ga0334987_0135336_1448_1582	3300034061	Freshwater	MTNTTPTLLEVLSYLTDPTFTAVIVITIGTFAALQFINRIGGAR
Ga0334995_0003686_1310_1471	3300034062	Freshwater	MPTDAIRLSMTNTTPTLLEVLSYLTDPTFTAVVVLVVGTFAALTAINKIGGAR
Ga0334995_0052434_385_543	3300034062	Freshwater	MPRFAFLMTPHHTPTLLEVLSYLTDPVFTTVVVLTVGTFAALTAIHKIGGRP
Ga0334995_0068892_2408_2527	3300034062	Freshwater	MSALEVLSYLTDPVFCTVVVLSVGTFVALELINKIGGAR
Ga0334995_0330410_2_115	3300034062	Freshwater	ALEALSYLTDTTVTTVVLLTIGTFAALQFINKIGGAR
Ga0310130_0018543_1294_1452	3300034073	Fracking Water	MPSFAFLMTPHHTPTLLEVLGYLTDPVFTTVIVLTIGTFAALQFINKIGGAQ
Ga0310130_0214535_459_596	3300034073	Fracking Water	MTHHTTPTLLEVLSYLTDATFTSVVVATIAVAFTLQLINRIGGAR
Ga0335020_0001322_3736_3855	3300034082	Freshwater	MSALEALSYLTDATFVSLVVLLVVGFVAFNAINKIGGRR
Ga0335020_0008147_3507_3632	3300034082	Freshwater	MTPTPLEVLSYLTDATFVSLVVLLVVGFVALNAINKIGGRR
Ga0335010_0141125_2_112	3300034092	Freshwater	MSALEVLSYLTDPVFCTVVVLSVGTFVALEIINKIGG
Ga0335010_0201539_979_1098	3300034092	Freshwater	MSALEALSYLTDTTFTTVVLLTIGTFAALQFINRIGGAK
Ga0335010_0544424_1_144	3300034092	Freshwater	MPSFAFLMTPHTTPTLLEVLSYLTDPTFTAVVVLVVGTFAALTAINKI
Ga0335025_0015912_2171_2290	3300034096	Freshwater	MSALEVLSYLTDSTFTAVVVLIAGAFAALTAINKIGGAR
Ga0335025_0040230_2937_3074	3300034096	Freshwater	MTPHHTPTLLEVLSHLTDPTFTVVVVLVVGAFAALTAINKIGGAE
Ga0335027_0016249_2657_2776	3300034101	Freshwater	MSALEVLSYLTDTTFTTVVLLTIGTFAALQFINRIGGAQ
Ga0335027_0026530_1226_1363	3300034101	Freshwater	MTHHTTPTLLEVLSYLTDPTFTAVIVITIGTFAALQFINKIGGAK
Ga0335027_0066274_2013_2132	3300034101	Freshwater	MSALEVLSYLTDSTFTTVVLLTIGTFAALQFISRIGGAK
Ga0335027_0091752_2205_2336	3300034101	Freshwater	TNTTPTLLEVLSYLTDPVFTTVIVLTIGTFAALQFINKIGGAR
Ga0335027_0135042_187_321	3300034101	Freshwater	MTNTTPTLLEVMGYLTDPVFTTVVVLTIGTFAALQFINRIGGAR
Ga0335027_0698584_53_211	3300034101	Freshwater	MPSFAFLMTPHTTPTLLEVLSYLTDPTFTAVVVLVVGTFAALTAINKIGGAR
Ga0335027_0822801_98_235	3300034101	Freshwater	MTHHTTPTLLEVLSYITDPVFTTVVVLTVGTFAALTAINRIGGRP
Ga0335027_0857491_1_108	3300034101	Freshwater	EVLSYLTDPVFCTVVVLAVGTFVALEIINKIGGAR
Ga0335031_0169035_3_131	3300034104	Freshwater	MTNTTPTTLEVLSYLTDPTFTVVVVLVVGAFAALTAINKIGGA
Ga0335031_0227466_1117_1248	3300034104	Freshwater	TNTTHTTLEVLSHLTDPTFTVVVVLVVGAFAALTAINKIGGAR
Ga0335036_0025060_3361_3480	3300034106	Freshwater	MSALEVLSYLTDPVFCTVVVLAVGTFVALEAINKIGGAR
Ga0335036_0653907_173_292	3300034106	Freshwater	MSALEVLSYLTDPVFCTVVALAVGTFVALEIINKIGGAK
Ga0335036_0820252_309_467	3300034106	Freshwater	MPSFAFPMTHHTTPTLLEVLSYLTDPTFTAVIVITIGTFAALQFINKIGGAR
Ga0335066_0205701_517_636	3300034112	Freshwater	MSALEVLSYLTDPVFCTVVLLTIGTFAALQFINRIGGAK
Ga0335066_0334552_1_120	3300034112	Freshwater	PTLLEVLGYLTDPVFTTVIVLTIGTFAALQFINKIGGAR
Ga0335016_0271292_2_136	3300034166	Freshwater	MTPHTTPTLLEVLSYLTDPTFTAVIVLTIGTFAALQFINRIGGAR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters