Metagenome / Metatranscriptome Family F072079

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F072079
Family Type	Metagenome / Metatranscriptome
Number of Sequences	121
Average Sequence Length	54 residues
Representative Sequence	MNLALLILLHGGDDRMDLIYFWSAILIVLLPIAIFVTIGYLLWKGYRKERKQNASH
Number of Associated Samples	84
Number of Associated Scaffolds	121

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	20.66 %
% of genes from short scaffolds (< 2000 bps)	71.07 %
Associated GOLD sequencing projects	78
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.46

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (84.298 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment (26.446 % of family members)
Environment Ontology (ENVO)	Unclassified (38.017 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Subsurface (non-saline) (50.413 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 60.71% β-sheet: 0.00% Coil/Unstructured: 39.29%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.46
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.46
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 121 Family Scaffolds
PF06778	Chlor_dismutase	43.80
PF01040	UbiA	19.01
PF01208	URO-D	9.92
PF00510	COX3	2.48
PF03626	COX4_pro	2.48
PF13806	Rieske_2	1.65
PF00762	Ferrochelatase	1.65
PF01593	Amino_oxidase	0.83
PF03449	GreA_GreB_N	0.83
PF00115	COX1	0.83
PF10609	ParA	0.83

COG ID	Name	Functional Category	% Frequency in 121 Family Scaffolds
COG3253	Coproheme decarboxylase/chlorite dismutase	Coenzyme transport and metabolism [H]	43.80
COG0407	Uroporphyrinogen-III decarboxylase HemE	Coenzyme transport and metabolism [H]	9.92
COG1845	Heme/copper-type cytochrome/quinol oxidase, subunit 3	Energy production and conversion [C]	2.48
COG3125	Heme/copper-type cytochrome/quinol oxidase, subunit 4	Energy production and conversion [C]	2.48
COG0276	Protoheme ferro-lyase (ferrochelatase)	Coenzyme transport and metabolism [H]	1.65
COG0782	Transcription elongation factor, GreA/GreB family	Transcription [K]	0.83

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	84.30 %
Unclassified	root	N/A	15.70 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	84.30 %
Unclassified	root	N/A	15.70 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	84.30 %
Unclassified	root	N/A	15.70 %

Name	Rank	Taxonomy	Distribution
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	42.15 %
Unclassified	root	N/A	15.70 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	3.31 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	42.15 %
Unclassified	root	N/A	15.70 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	3.31 %

Name	Rank	Taxonomy	Distribution
unclassified Gemmatimonadetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes	42.15 %
Unclassified	root	N/A	15.70 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	3.31 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	42.15 %
Unclassified	root	N/A	15.70 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	3.31 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002886\|JGI25612J43240_1053190	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	604	Open in IMG/M
3300005294\|Ga0065705_10531086	Not Available	754	Open in IMG/M
3300005295\|Ga0065707_11005145	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	538	Open in IMG/M
3300005440\|Ga0070705_100005153	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	6344	Open in IMG/M
3300005440\|Ga0070705_100967027	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	689	Open in IMG/M
3300005444\|Ga0070694_100071415	All Organisms → cellular organisms → Bacteria	2393	Open in IMG/M
3300005450\|Ga0066682_10127925	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1609	Open in IMG/M
3300005518\|Ga0070699_100029581	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	4724	Open in IMG/M
3300005536\|Ga0070697_101110294	Not Available	704	Open in IMG/M
3300005545\|Ga0070695_100531192	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	914	Open in IMG/M
3300006049\|Ga0075417_10546800	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	585	Open in IMG/M
3300006844\|Ga0075428_100172761	All Organisms → cellular organisms → Bacteria	2342	Open in IMG/M
3300006844\|Ga0075428_101378787	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	740	Open in IMG/M
3300006845\|Ga0075421_100157518	All Organisms → cellular organisms → Bacteria	2835	Open in IMG/M
3300006845\|Ga0075421_100329310	All Organisms → cellular organisms → Bacteria	1850	Open in IMG/M
3300006845\|Ga0075421_100736709	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1142	Open in IMG/M
3300006845\|Ga0075421_100738992	Not Available	1139	Open in IMG/M
3300006847\|Ga0075431_100426006	Not Available	1326	Open in IMG/M
3300006852\|Ga0075433_10199151	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1781	Open in IMG/M
3300006854\|Ga0075425_100217038	All Organisms → cellular organisms → Bacteria	2200	Open in IMG/M
3300006880\|Ga0075429_100116963	All Organisms → cellular organisms → Bacteria	2330	Open in IMG/M
3300009147\|Ga0114129_10529009	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1536	Open in IMG/M
3300009815\|Ga0105070_1094326	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	586	Open in IMG/M
3300010337\|Ga0134062_10092378	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1290	Open in IMG/M
3300011419\|Ga0137446_1081524	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	755	Open in IMG/M
3300011429\|Ga0137455_1008809	All Organisms → cellular organisms → Bacteria	2709	Open in IMG/M
3300011442\|Ga0137437_1146096	Not Available	817	Open in IMG/M
3300012040\|Ga0137461_1021255	All Organisms → cellular organisms → Bacteria	1635	Open in IMG/M
3300012199\|Ga0137383_10000559	All Organisms → cellular organisms → Bacteria	19589	Open in IMG/M
3300012203\|Ga0137399_10072324	All Organisms → cellular organisms → Bacteria	2590	Open in IMG/M
3300012203\|Ga0137399_10360393	All Organisms → cellular organisms → Bacteria	1209	Open in IMG/M
3300012204\|Ga0137374_10262443	All Organisms → cellular organisms → Bacteria	1440	Open in IMG/M
3300012206\|Ga0137380_10000595	All Organisms → cellular organisms → Bacteria	26846	Open in IMG/M
3300012206\|Ga0137380_11025150	Not Available	705	Open in IMG/M
3300012355\|Ga0137369_10166453	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1735	Open in IMG/M
3300012685\|Ga0137397_10231938	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1374	Open in IMG/M
3300012685\|Ga0137397_10299949	All Organisms → cellular organisms → Bacteria	1197	Open in IMG/M
3300012918\|Ga0137396_10182616	All Organisms → cellular organisms → Bacteria	1538	Open in IMG/M
3300012922\|Ga0137394_10077781	All Organisms → cellular organisms → Bacteria	2772	Open in IMG/M
3300012922\|Ga0137394_11348265	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	575	Open in IMG/M
3300012922\|Ga0137394_11367849	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	569	Open in IMG/M
3300012924\|Ga0137413_11615125	Not Available	530	Open in IMG/M
3300012944\|Ga0137410_11263897	Not Available	637	Open in IMG/M
3300015245\|Ga0137409_10626963	Not Available	906	Open in IMG/M
3300015245\|Ga0137409_11304663	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	568	Open in IMG/M
3300015358\|Ga0134089_10405844	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	583	Open in IMG/M
3300017997\|Ga0184610_1033406	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1456	Open in IMG/M
3300017997\|Ga0184610_1153178	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	757	Open in IMG/M
3300017997\|Ga0184610_1208509	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	653	Open in IMG/M
3300018028\|Ga0184608_10000515	All Organisms → cellular organisms → Bacteria	10434	Open in IMG/M
3300018031\|Ga0184634_10005347	All Organisms → cellular organisms → Bacteria	4292	Open in IMG/M
3300018031\|Ga0184634_10076465	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1432	Open in IMG/M
3300018031\|Ga0184634_10161506	All Organisms → cellular organisms → Bacteria	1009	Open in IMG/M
3300018053\|Ga0184626_10256478	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	733	Open in IMG/M
3300018056\|Ga0184623_10020813	All Organisms → cellular organisms → Bacteria	2906	Open in IMG/M
3300018063\|Ga0184637_10216455	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1172	Open in IMG/M
3300018063\|Ga0184637_10356825	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	878	Open in IMG/M
3300018071\|Ga0184618_10000030	All Organisms → cellular organisms → Bacteria	37633	Open in IMG/M
3300018071\|Ga0184618_10030393	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1853	Open in IMG/M
3300018071\|Ga0184618_10040463	All Organisms → cellular organisms → Bacteria	1651	Open in IMG/M
3300018071\|Ga0184618_10058322	All Organisms → cellular organisms → Bacteria	1423	Open in IMG/M
3300018071\|Ga0184618_10333499	Not Available	647	Open in IMG/M
3300018072\|Ga0184635_10397124	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	522	Open in IMG/M
3300018074\|Ga0184640_10035263	All Organisms → cellular organisms → Bacteria	2009	Open in IMG/M
3300018074\|Ga0184640_10106582	Not Available	1224	Open in IMG/M
3300018075\|Ga0184632_10496951	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	501	Open in IMG/M
3300018076\|Ga0184609_10170584	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1007	Open in IMG/M
3300018076\|Ga0184609_10413497	Not Available	625	Open in IMG/M
3300018076\|Ga0184609_10416299	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	622	Open in IMG/M
3300018077\|Ga0184633_10040491	All Organisms → cellular organisms → Bacteria	2357	Open in IMG/M
3300018078\|Ga0184612_10020675	All Organisms → cellular organisms → Bacteria	3382	Open in IMG/M
3300018078\|Ga0184612_10136480	All Organisms → cellular organisms → Bacteria	1283	Open in IMG/M
3300018078\|Ga0184612_10370889	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	723	Open in IMG/M
3300018079\|Ga0184627_10158543	All Organisms → cellular organisms → Bacteria	1199	Open in IMG/M
3300018079\|Ga0184627_10541824	Not Available	594	Open in IMG/M
3300018082\|Ga0184639_10003177	All Organisms → cellular organisms → Bacteria	7377	Open in IMG/M
3300018084\|Ga0184629_10022806	All Organisms → cellular organisms → Bacteria	2617	Open in IMG/M
3300018084\|Ga0184629_10053969	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1845	Open in IMG/M
3300019255\|Ga0184643_1134216	Not Available	670	Open in IMG/M
3300019869\|Ga0193705_1050560	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	858	Open in IMG/M
3300019872\|Ga0193754_1020898	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	704	Open in IMG/M
3300019879\|Ga0193723_1000069	All Organisms → cellular organisms → Bacteria	31610	Open in IMG/M
3300019879\|Ga0193723_1005163	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	4458	Open in IMG/M
3300019880\|Ga0193712_1000114	All Organisms → cellular organisms → Bacteria	12817	Open in IMG/M
3300019880\|Ga0193712_1013529	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1683	Open in IMG/M
3300019886\|Ga0193727_1005158	All Organisms → cellular organisms → Bacteria	5296	Open in IMG/M
3300020003\|Ga0193739_1000819	All Organisms → cellular organisms → Bacteria	8734	Open in IMG/M
3300020010\|Ga0193749_1052675	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	778	Open in IMG/M
3300021073\|Ga0210378_10004663	All Organisms → cellular organisms → Bacteria	6418	Open in IMG/M
3300021073\|Ga0210378_10022842	All Organisms → cellular organisms → Bacteria	2521	Open in IMG/M
3300021081\|Ga0210379_10031410	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	2057	Open in IMG/M
3300021081\|Ga0210379_10111226	All Organisms → cellular organisms → Bacteria	1145	Open in IMG/M
3300021090\|Ga0210377_10714512	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	550	Open in IMG/M
3300021972\|Ga0193737_1004484	All Organisms → cellular organisms → Bacteria	1854	Open in IMG/M
3300022534\|Ga0224452_1017690	All Organisms → cellular organisms → Bacteria	1953	Open in IMG/M
3300022756\|Ga0222622_10291293	All Organisms → cellular organisms → Bacteria	1120	Open in IMG/M
3300022756\|Ga0222622_11444240	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	506	Open in IMG/M
3300025165\|Ga0209108_10280765	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	840	Open in IMG/M
3300025318\|Ga0209519_10523567	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	662	Open in IMG/M
3300025327\|Ga0209751_10368565	Not Available	1198	Open in IMG/M
3300025922\|Ga0207646_10640833	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	952	Open in IMG/M
3300026285\|Ga0209438_1000555	All Organisms → cellular organisms → Bacteria	11628	Open in IMG/M
3300026329\|Ga0209375_1151067	Not Available	978	Open in IMG/M
3300027490\|Ga0209899_1077018	Not Available	660	Open in IMG/M
3300027587\|Ga0209220_1000170	All Organisms → cellular organisms → Bacteria	27958	Open in IMG/M
3300027873\|Ga0209814_10425481	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	585	Open in IMG/M
3300027903\|Ga0209488_10116577	All Organisms → cellular organisms → Bacteria	2009	Open in IMG/M
3300027909\|Ga0209382_10233092	All Organisms → cellular organisms → Bacteria	2097	Open in IMG/M
3300027909\|Ga0209382_10448932	All Organisms → cellular organisms → Bacteria	1429	Open in IMG/M
3300027947\|Ga0209868_1018032	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	714	Open in IMG/M
3300028784\|Ga0307282_10003236	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	6077	Open in IMG/M
3300028793\|Ga0307299_10002443	All Organisms → cellular organisms → Bacteria	6315	Open in IMG/M
3300032180\|Ga0307471_102476693	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	656	Open in IMG/M
3300033407\|Ga0214472_10319831	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1472	Open in IMG/M
3300033407\|Ga0214472_10352842	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1389	Open in IMG/M
3300033407\|Ga0214472_10950122	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	763	Open in IMG/M
3300033407\|Ga0214472_11491965	Not Available	578	Open in IMG/M
3300033417\|Ga0214471_10319164	Not Available	1261	Open in IMG/M
3300033417\|Ga0214471_10642328	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	838	Open in IMG/M
3300034164\|Ga0364940_0157552	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	656	Open in IMG/M
3300034176\|Ga0364931_0022620	All Organisms → cellular organisms → Bacteria	1787	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	87.60%
Host-Associated	Host-Associated	12.40%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	50.41%
Aquatic	Environmental → Aquatic	37.19%
Plants	Host-Associated → Plants	12.40%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	48.76%
Sediment	Environmental → Aquatic → Sediment	32.23%
Rhizosphere	Host-Associated → Plants → Rhizosphere	12.40%
Freshwater	Environmental → Aquatic → Freshwater	4.96%
Floodplain	Environmental → Terrestrial → Floodplain	1.65%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	38.84%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	32.23%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	12.40%
Loam	Environmental → Terrestrial → Soil → Loam	7.44%
Sediment	Environmental → Aquatic → Freshwater → Sediment	4.96%
Sand	Environmental → Terrestrial → Soil → Sand	2.48%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	1.65%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	32.23%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	29.75%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	12.40%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.79%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	4.96%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	4.96%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.31%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	2.48%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	1.65%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.83%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.83%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	26.45%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	14.88%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	12.40%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	9.92%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.79%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	4.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	4.96%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	3.31%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.48%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	2.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.65%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.65%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	1.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.65%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.65%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	1.65%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.83%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.83%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	0.83%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002886	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cm	Environmental	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005450	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009815	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_0_10	Environmental	Open in IMG/M
3300010337	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015	Environmental	Open in IMG/M
3300011419	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT357_2	Environmental	Open in IMG/M
3300011429	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT600_2	Environmental	Open in IMG/M
3300011442	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT138_2	Environmental	Open in IMG/M
3300012040	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT746_2	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015358	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300017997	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_coex	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018031	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b1	Environmental	Open in IMG/M
3300018053	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_b1	Environmental	Open in IMG/M
3300018056	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_b1	Environmental	Open in IMG/M
3300018063	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b2	Environmental	Open in IMG/M
3300018071	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_b1	Environmental	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300018074	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b2	Environmental	Open in IMG/M
3300018075	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b1	Environmental	Open in IMG/M
3300018076	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex	Environmental	Open in IMG/M
3300018077	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b1	Environmental	Open in IMG/M
3300018078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_coex	Environmental	Open in IMG/M
3300018079	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b1	Environmental	Open in IMG/M
3300018082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b2	Environmental	Open in IMG/M
3300018084	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_b1	Environmental	Open in IMG/M
3300019255	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019869	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3m2	Environmental	Open in IMG/M
3300019872	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1a1	Environmental	Open in IMG/M
3300019879	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2m2	Environmental	Open in IMG/M
3300019880	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3a1	Environmental	Open in IMG/M
3300019886	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c2	Environmental	Open in IMG/M
3300020003	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2a2	Environmental	Open in IMG/M
3300020010	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1s2	Environmental	Open in IMG/M
3300021073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_b1 redo	Environmental	Open in IMG/M
3300021081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_coex redo	Environmental	Open in IMG/M
3300021090	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_65_b1 redo	Environmental	Open in IMG/M
3300021972	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2m2	Environmental	Open in IMG/M
3300022534	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_b1	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025165	Soil microbial communities from Rifle, Colorado, USA - sediment 10ft 1	Environmental	Open in IMG/M
3300025318	Soil microbial communities from Rifle, Colorado, USA - sediment 13ft 1	Environmental	Open in IMG/M
3300025327	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 13_1 (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026285	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cm (SPAdes)	Environmental	Open in IMG/M
3300026329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131 (SPAdes)	Environmental	Open in IMG/M
3300027490	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_0_10 (SPAdes)	Environmental	Open in IMG/M
3300027587	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M3 (SPAdes)	Environmental	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300027947	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_40_50 (SPAdes)	Environmental	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300028793	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_159	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300033407	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT140D175	Environmental	Open in IMG/M
3300033417	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT142D155	Environmental	Open in IMG/M
3300034164	Sediment microbial communities from East River floodplain, Colorado, United States - 14_s17	Environmental	Open in IMG/M
3300034176	Sediment microbial communities from East River floodplain, Colorado, United States - 21_j17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25612J43240_10531902	3300002886	Grasslands Soil	MMNLALLVLLHGGDDRMDLIYFWSAILIVLLPISIFVTIGYKLWKGYRKERKRSASH*
Ga0065705_105310862	3300005294	Switchgrass Rhizosphere	QPETLPRAMTNLALLVLLHGGDDRMDLIYFWSAILIVLLPISIFVTIGYKLWKGYRKERKQSASH*
Ga0065707_110051452	3300005295	Switchgrass Rhizosphere	MTNLARLVLLHGGDDRMDLIYFWSAILIVLLPISIFVTIGYKLWKGYRKERKQSASH*
Ga0070705_1000051536	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MNLALLLLLHGGDDRMDLIYFWSAILIVLLPITIFVTIGYLLWKRYRKERKQSASH*
Ga0070705_1009670272	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MTPALLVLMHGGGDRMDLIYFWSAILIVLLPIAIFVTIGYLLWRGYRKERKQSASH*
Ga0070694_1000714152	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	MTNLALLVLLHGGDDRMDLIYFWSAILIVLLPISIFVTIGYKLWKGYRKERKQSASH*
Ga0066682_101279253	3300005450	Soil	MNHDRMDLIYFWSAILIVLLPIAIFVTIGYLLWKGYRKERKQSAPH*
Ga0070699_1000295816	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MMNLALLVLLHGGDDRMDLIYFWSAILIVLLPISIFVTIGYKLWKGYRKERKQSASH*
Ga0070697_1011102941	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MNLALLILLHGGNDRMDLIYFWSAILIVLLPITIFVTIGYLLWKRYRKERKQSASH*
Ga0070695_1005311923	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	MNLALLLLLHGGDDRMDLIYFWSAILIVLLPITIFVTIGYLLWKRYRKERKQS
Ga0075417_105468002	3300006049	Populus Rhizosphere	MNLALLILLHGGDDRMDLIYFWSAILIVLLPISIFVTIGYKLWQGYRKERKQNASH*
Ga0075428_1001727613	3300006844	Populus Rhizosphere	MMNLALLVLLHGGDDRMDLIYFWSAILIVLLPITVFVTIGYKLWKGYRKERKQSASH*
Ga0075428_1013787872	3300006844	Populus Rhizosphere	MIPALLVLLHGDDMDLIYFWSAILIVLLPVTIFVTIGYLLWKGYRKERKETASH*
Ga0075421_1001575183	3300006845	Populus Rhizosphere	MSLALLMLLHGGNDRMDLIYFWSAILIVLLPIAIFVTIGYKLWKAYRKEHKPSASH*
Ga0075421_1003293105	3300006845	Populus Rhizosphere	MMNLALLVLLHGGDDRMDLIYFWSAILIVLLPITIFITIGYKLWKGYRKERKQSASR*
Ga0075421_1007367091	3300006845	Populus Rhizosphere	MNLALLMLLHGGDDRMDLIYFWSAILIVLLPISIFVTIGYKLWQGYRKERKQNA
Ga0075421_1007389922	3300006845	Populus Rhizosphere	MIPTLLVLLHGDDMDLIYFWSAILIVLLPVTIFVTIGYLLWKGYRKERKETASH*
Ga0075431_1004260062	3300006847	Populus Rhizosphere	MIPVLLVLLHGDDMDLIYFWSAILIVLLPVTIFVTIGYLLWKGYRKERKETASH*
Ga0075433_101991512	3300006852	Populus Rhizosphere	MNLALLMLLHGGDDRMDLIYFWSAILIVLLPISIFVTIGYKLWQGYRKERKQNASH*
Ga0075425_1002170385	3300006854	Populus Rhizosphere	MNLSPLVLLLLLHGGDDRMDLIYFWSAILIVLLPIAIFVTIGYLLWRGYRKERKQSASR*
Ga0075429_1001169632	3300006880	Populus Rhizosphere	MIPVLMVLLHGDDMDLIYFWSAILIVLLPVTIFVTIGYLLWKGYRKERKETASH*
Ga0114129_105290093	3300009147	Populus Rhizosphere	MNLALLMLLHGSNDRMDLIYFWSAILIVLLPISIFVTIGYKLWQGYRKERKQNASH*
Ga0105070_10943262	3300009815	Groundwater Sand	MIAASLAFLALLHGGDDRMDLIYFWSAILIVLLPLAIFTTLTWLLVKAYRKRERREHLPH
Ga0134062_100923783	3300010337	Grasslands Soil	MNLALLVLLHGGDDRMDLIYFWSAILIVLLPISVFVTIGYKLWKGYRKERKQTASH*
Ga0137446_10815243	3300011419	Soil	MNLALLILLHGGDDRMDLIYFWSAIIIVLLPIAIFVTIGYLLWKAYRKERKQSASH*
Ga0137455_10088091	3300011429	Soil	MNALLVLLHGGGDRMDLIYFWSAILIVLLPLAIFVTIGVLLVKGYRKREHKPTASH*
Ga0137437_11460962	3300011442	Soil	MIPALLVLLHGDNMDLIYFWSAILIVLLPIAIFVTIGYLLWKGYRKERKETASH*
Ga0137461_10212553	3300012040	Soil	HGGDDRMDLIYFWSAILIVLLPIAIFVTIGYLLWKAYRKERKQSASH*
Ga0137383_100005597	3300012199	Vadose Zone Soil	MNHDRMDLIYFWSAILIVLLPIAVFVTIGYLLWKGYRKERKHSAPH*
Ga0137399_100723244	3300012203	Vadose Zone Soil	MNLALLVLLHGGDDRMDLIYFWSAILIVLLPISVFVTIAYKLWKGYRKERKQSASH*
Ga0137399_103603932	3300012203	Vadose Zone Soil	MTLALLVLLHRGGDRMDLIYFWSAILIVLLPVAIFVTIGYLLWKGYRKERKQNASH*
Ga0137374_102624432	3300012204	Vadose Zone Soil	MMNLTLLVLLHGGDDRMDLIYFWSAILIVLLPISVFVTIGYKLWKGYRKERKQSAPH*
Ga0137380_100005959	3300012206	Vadose Zone Soil	MNHDRMDLIYFWSAILIVLLPIAVFVTIGYLLWKGYRKERKHSASH*
Ga0137380_110251502	3300012206	Vadose Zone Soil	MNHDRMDLIYFWSAILIVLLPIAIFVTIGYLLWKGYRKERKHSAPH*
Ga0137369_101664533	3300012355	Vadose Zone Soil	MMNLTLLVLLHGGDDRMDLIYFWSAILIVLLPISVFVTIGYKLWKGYRKERKQSASH*
Ga0137397_102319384	3300012685	Vadose Zone Soil	MTNLALLVLMHGGDDRMDLIYFWSAILIVLLPISVFVTIAYKLWKGYRKERKQ
Ga0137397_102999492	3300012685	Vadose Zone Soil	LIYFWSAILIVLLPIAIFVTIGYLLWRGYRKERKQSASH*
Ga0137396_101826162	3300012918	Vadose Zone Soil	MTPTLLVLMHGGGDRMDLIYFWSAILIVLLPIAIFVTIGYLLWRGYRKERKQSASH*
Ga0137394_100777815	3300012922	Vadose Zone Soil	MTNLALLVLMHGGDDRMDLIYFWSAILIVLLPISVFVTIAYKLWKGYRKERKQSASH*
Ga0137394_113482652	3300012922	Vadose Zone Soil	MTLALLVLLHGGGDRMDLIYFWSAILIVLLPIAIFVTIGYLLWKGYRKERKQNASH*
Ga0137394_113678493	3300012922	Vadose Zone Soil	MTPSLLALLVPLHGGSDRMDLIYFWSAILIVLLPIAIFVTIGYLLVKGYRKREHKPTASR
Ga0137413_116151252	3300012924	Vadose Zone Soil	MMNHDRMDLIYFWSAILIVLLPISVFVTIAYKLWKGYRKERKQSASH*
Ga0137410_112638971	3300012944	Vadose Zone Soil	IYFWSAILIVLLPIGIFVTIGYLLWKGYRKERKETPSH*
Ga0137409_106269632	3300015245	Vadose Zone Soil	LLHGDMDLIYFWSAILIVLLPIGIFVTIGYLLWKGYRKERKETPSH*
Ga0137409_113046633	3300015245	Vadose Zone Soil	MTLALLVLSHGGGDRMDLIYFWRAILIVLLPIAIFVTIGYLLWKGYRKERKQNASH*
Ga0134089_104058441	3300015358	Grasslands Soil	ALSRPMTPALLVLMHGGGDRMDLIYFWSAILIVLLPIAIFVTIGYLLWRGYRKERKQSASH*
Ga0184610_10334062	3300017997	Groundwater Sediment	MIAASLAFLALLHGGDDRMDLIYFWSAVLIVALPLTIFTVLAYRLVKAYRSRERGAGSSS
Ga0184610_11531783	3300017997	Groundwater Sediment	MNHGDGRLDLIYFWSSILIVLLPIAIFATIGYLLWKGYRKERKQSASH
Ga0184610_12085092	3300017997	Groundwater Sediment	MNLFLLILLHGGNDRMDLIYFWSAILIVLLPITIFVTIGYLLWKRYRKERKQSASH
Ga0184608_100005159	3300018028	Groundwater Sediment	MNLALLILLHGGDDRMDLIYFWSAILIVLLPIAIFVTIGYLLWKGYRKERKQNASH
Ga0184634_100053477	3300018031	Groundwater Sediment	MISASLTLLALLHGGDDRIDLIYFWSSILMVLLPLAIFTTLAVLLVKAYRSRERGAGSSR
Ga0184634_100764652	3300018031	Groundwater Sediment	MNHGDGRLDLIYFWSSILIVLLPIAIFVTIGYLLWKGYRKERKQSAPH
Ga0184634_101615061	3300018031	Groundwater Sediment	LPDEPQALPRPMNVLLVLLHGGGDRMDLIYFWSAILIVLLPLAIFVTIGYLLWKGYRKERKQSASH
Ga0184626_102564783	3300018053	Groundwater Sediment	MNMVLLILLHGGDDRMDLIYFWSAILIVLLPIAVFVTIGYLLWKGYRKERKQSAS
Ga0184623_100208133	3300018056	Groundwater Sediment	MNHGDGRLDLIYFWSSILIVLLPIAIFATIGYLLWKGYRKERKQSASR
Ga0184637_102164551	3300018063	Groundwater Sediment	MMSASLTLLALLHGGDDRIDLIYFWSSILMVLLPLAIFTTLAVLLVKAYRKRERRAH
Ga0184637_103568252	3300018063	Groundwater Sediment	MNLVLLILLHGDDRMDLIYFWSAILIVLLPITIFVTIGYLLWKRYRKEGKQSASH
Ga0184618_1000003039	3300018071	Groundwater Sediment	MNLALLTLLHGSDQMDLIYFWSAILMVALPITIFGTIGFLLWKGYRKREQRP
Ga0184618_100303932	3300018071	Groundwater Sediment	MNLALLVLLHGGDDRMDLIYFWSAILIVLLPISVFVTIGYKLWKGYRKERKETASR
Ga0184618_100404633	3300018071	Groundwater Sediment	MTNLALLVLLHGGDDRMDLIYFWSAILIVLLPISIFVTIGYKLWKGYRKERKQSASH
Ga0184618_100583222	3300018071	Groundwater Sediment	MNLALLALLHGDDRMDLIYFWSAILIVALPIAIFVTIGFLLWKGYRKREQRP
Ga0184618_103334992	3300018071	Groundwater Sediment	YFWSAILIVLLPIAIFVTIGYLLWKGYRKERKQNASH
Ga0184635_103971242	3300018072	Groundwater Sediment	MNLALMVLLHGGDDRMDLIYFWSAILIVLLPISIFVTIGYKLWKGYRKERKQSAPH
Ga0184640_100352632	3300018074	Groundwater Sediment	MMSASLMLLALLHGGDDRIDLIYFWSSILMVLLPLAIFTTLAYLLVKAYRKRERGPESRNAERGTRN
Ga0184640_101065822	3300018074	Groundwater Sediment	MNLALLILLHGGDDRMDLIYFWSSILIVLLPITIFVTIGYLLWKGYRKERKQSASH
Ga0184632_104969512	3300018075	Groundwater Sediment	MNLVLLILLHGGDDRMDLIYFWSAILIVLLPITIFVTIGYLLWKRYRKERKQSASR
Ga0184609_101705843	3300018076	Groundwater Sediment	MNHDHMDLIYFWSAILIVLLPITIFVTIGYLLWKGYRKERKQNASH
Ga0184609_104134971	3300018076	Groundwater Sediment	HDHMDLIYFWSAILIVLLPITIFVTIGCLLWKGYRKERKQSASH
Ga0184609_104162993	3300018076	Groundwater Sediment	MNALLVLLHGGGDRMDLIYFWSAILIVLLPLAIFVTIGFLLVKAYRKREHKPTASH
Ga0184633_100404915	3300018077	Groundwater Sediment	MISASLTLLALLHGGDDRIDLIYFWSSILMVLLPLAIFTTLAVLLVKAYRKRERSQSQ
Ga0184612_100206752	3300018078	Groundwater Sediment	MNLALLLLLHGDDRMDLIYFWSAILIVLLPIGIFVTIGYLLWKRYRKERKQSASH
Ga0184612_101364802	3300018078	Groundwater Sediment	MNLVLLILLHGGDDRMDLIYFWSAILIVLLPITIFVTIGYLLWKRYRKERKQSASH
Ga0184612_103708892	3300018078	Groundwater Sediment	MNLSPLALLVLLHGRDDRLDLIYFWSAILIVLLPLAIFVTIGFLLVKAYRKRERRAH
Ga0184627_101585432	3300018079	Groundwater Sediment	HGGDDRIDLIYFWSSILMVLLPLAIFTTLAVLLVKAYRSRERGAGSSR
Ga0184627_105418243	3300018079	Groundwater Sediment	MNLALLVLLHGGDDRLDLIYFWSAILIVLLPIAVFVTIGFLLVKAYRKREHKPTA
Ga0184639_100031778	3300018082	Groundwater Sediment	MISASLTLLALLHGGDDRIDLIYFWSSILMVLLPLAIFTTLAVLLVKAYRKRERSQSR
Ga0184629_100228064	3300018084	Groundwater Sediment	DRMDLIYFWSAILIVLLPITIFVTIGYLLWKGYRKERKQSASH
Ga0184629_100539693	3300018084	Groundwater Sediment	MNQALLILLHGGGDRMDLIYFWSAILIVLLPITIFVTIGYLLWKGYRKERKQSASH
Ga0184643_11342161	3300019255	Groundwater Sediment	NLALLILLHGGDDRMDLIYFWSAILIVLLPIAIFVTIGYLLWKGYRKERKQNASH
Ga0193705_10505603	3300019869	Soil	MTNLALVLLHGGDDRMDLIYFWSAILIVLLPISIFVTIGYKLWKGYLKERKQNASR
Ga0193754_10208981	3300019872	Soil	MNLALLLLVHGGDDRMDLIYFWSAILIVLLPITIFVTIGYLLWKRYRKERK
Ga0193723_100006924	3300019879	Soil	MTPALLVLMHGGGDRMDLIYFWSAILIVLLPIAIFVTIGYLLWRGYRKERKQSASH
Ga0193723_10051635	3300019879	Soil	MTNLALLVLLHGGDDRMDLIYFWSAILIVLLPISTFVTIGYKLWKGYRQERKQNASH
Ga0193712_10001146	3300019880	Soil	MNLALLLLLHGGDDRMDLIYFWSAILIVLLPITIFVTIGYLLWKRYRKERKQSASH
Ga0193712_10135293	3300019880	Soil	MNLALLLLVHGGDDRMDLIYFWSAILIVLLPITIFVTIGYLLWKRYRKERKETASH
Ga0193727_10051586	3300019886	Soil	MTNLALLVLLHGGDDRMDLIYFWSAILIVLLPISIFGTIGYKLWKGYRKERKQSASH
Ga0193739_10008193	3300020003	Soil	MNHGDGRLDLIYFWSAILIVLLPIAIFGTIGYKLWKAYRKEHKPSASR
Ga0193749_10526753	3300020010	Soil	MTNLALLVLLHGGDDRMDLIYFWSAILIVLLPISIFVTIGYKLWKGYRKERKQNASR
Ga0210378_100046637	3300021073	Groundwater Sediment	MNHDHMDLIYFWSAILIVLLPITIFVTIGYLLWKGYRKERKQSASH
Ga0210378_100228421	3300021073	Groundwater Sediment	MNLALLILLHGGDDRMDLIYFWSAILIVLLPIAIFVTIGYLLWKGYRKERKQ
Ga0210379_100314103	3300021081	Groundwater Sediment	MNLALLILLHGSSDRMDLIYFWSAILIVLLPITIFVTIGYLLWKGYRKERKQSASH
Ga0210379_101112262	3300021081	Groundwater Sediment	PETLHRPMNPALLILLHGGGDRMDLIYFWSAILIVLLPITIFVTIGYLLWKGYRKERKQSASH
Ga0210377_107145121	3300021090	Groundwater Sediment	MSLALLVLLHGGDDRMDLVYFWSAILIVLLPIAIFVTIAYLLFKGYRKRERRSTEPGPPP
Ga0193737_10044845	3300021972	Soil	MSLALLILVHGGNDRMDLIYFWSAILIVLLPIAIFVTIGYKLWKAYRKEHKPSASR
Ga0224452_10176902	3300022534	Groundwater Sediment	MNLALLILLHGRDDRMDLIYFWSAILIVLLPIAIFVTIGYLLWKGYRKERKQSASH
Ga0222622_102912932	3300022756	Groundwater Sediment	LHGGDDRMDLIYFWSAILIVLLPISIFVTIGYKLWKGYLKERKQNASR
Ga0222622_114442402	3300022756	Groundwater Sediment	MNMFLLILLHGGNDRMDLIYFWSAILIVLLPITIFVTIGYLLWKRYRKERKQSASH
Ga0209108_102807653	3300025165	Soil	MSLALLVLLHGGDDRMDLIYFWSAILIVLLPVAIFVTIAYLLFKGYRKRERRKTEPGPSS
Ga0209519_105235672	3300025318	Soil	MSLALLVLLHGGDDRMDLVYFWSAILIVLLPIATFVTIAYLLFKGYRKRERRSTEPGPPR
Ga0209751_103685652	3300025327	Soil	MMLAALLLLHGGDSRMDLAYFWSAILIVLLPVGTFVTIAYLLIKAYRNRERSQH
Ga0207646_106408333	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MNLALLLLLHGGDDRMDLIYFWSAILIVLLPITIFVTIGYLLWKRY
Ga0209438_10005555	3300026285	Grasslands Soil	MMNLALLVLLHGGDDRMDLIYFWSAILIVLLPISIFVTIGYKLWKGYRKERKRSASH
Ga0209375_11510672	3300026329	Soil	MNHDRMDLIYFWSAILIVLLPIAIFVTIGYLLWKGYRKERKQSAPH
Ga0209899_10770182	3300027490	Groundwater Sand	TLHRPMIAASLAFLALLHGGDDRMDLIYFWSAILIVLLPLAIFTTLTWLLVKAYRKRERREHLPH
Ga0209220_10001706	3300027587	Forest Soil	MIAASLVLQVLQHGAKDRMDLIYFWSSLFMVLLPLAIFSTLTYMIVNAYRKRERSEHLPH
Ga0209814_104254812	3300027873	Populus Rhizosphere	MNLALLMLLHGGDDRMDLIYFWSAILIVLLPISIFVTIGYKLWQGYRKERKQNASH
Ga0209488_101165773	3300027903	Vadose Zone Soil	MTNLVLLVLLHRGDDRMDLIYFWSAILIVLLPISIFVTIAYKLWRGYRKERKQSAPH
Ga0209382_102330922	3300027909	Populus Rhizosphere	MSLALLMLLHGGNDRMDLIYFWSAILIVLLPIAIFVTIGYKLWKAYRKEHKPSASH
Ga0209382_104489322	3300027909	Populus Rhizosphere	MIPVLLVLLHGDDMDLIYFWSAILIVLLPVTIFVTIGYLLWKGYRKERKETASH
Ga0209868_10180323	3300027947	Groundwater Sand	MNLALLVLLHGGDDRMDLIYFWSAILIVLLPIAVFVALGYWLVKMYRREQKPR
Ga0307282_100032366	3300028784	Soil	MTNLALLVLLHGGDDRMDLIYFWSAILIVLLPISIFVTIGYKLWKRYRQERKQNASH
Ga0307299_100024436	3300028793	Soil	MTNLVLLVLLHGGDDRMDLIYFWSAILIVLLPISVFVTIGYKLWKGYRKERKQSASH
Ga0307471_1024766933	3300032180	Hardwood Forest Soil	MNLALLLLLHGGDDRMDLIYFWSAILIVLLPIAIFVTIGYLLWKRYR
Ga0214472_103198313	3300033407	Soil	MMPAALLLLHGGDSRMDLAYFWSAILIVLLPVATFVTIAYLLIKAYRKRERSQH
Ga0214472_103528423	3300033407	Soil	MMPLALLLLHGGDSRMDLAYFWSAILIVLLPVATFVTIAYWLVRMYRREHKSRLDSVA
Ga0214472_109501222	3300033407	Soil	MMPVALLLLHGGDSRMDLAYFWSAILIVLLPMATFVTIAYLLIKAYRNRERSEH
Ga0214472_114919653	3300033407	Soil	MPAALLLLHGGDSRMDLAYFWSAILIVLLPVAVFITMAVLLVKAYRGRERSQH
Ga0214471_103191643	3300033417	Soil	MMPAALLLLHGGDSRMDLAYFWSAILIVLLPMATFVTIAYLLIKAYRKRERSQH
Ga0214471_106423283	3300033417	Soil	MMPLALLLLHGGDSRMDLAYFWSAILIVLLPMATFVTIAYLLIKAYRNRERSQH
Ga0364940_0157552_25_174	3300034164	Sediment	LHGGDDRIDLIYFWSSILIVLLPLAIFTTLTYKLVKAYRNRERGAGSSN
Ga0364931_0022620_1589_1756	3300034176	Sediment	MNLVLLILLHGDDRMDLIYFWSAILIVLLPITIFVTIGYLLWKRYRKERKQSASH

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F072079

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences