Metagenome / Metatranscriptome Family F072073

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F072073
Family Type	Metagenome / Metatranscriptome
Number of Sequences	121
Average Sequence Length	51 residues
Representative Sequence	MTEPSKNPILNERVKPAMLNPLVKYITPSADIKWILLCFGIALAIFAIAYI
Number of Associated Samples	95
Number of Associated Scaffolds	121

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	81.82 %
% of genes near scaffold ends (potentially truncated)	27.27 %
% of genes from short scaffolds (< 2000 bps)	93.39 %
Associated GOLD sequencing projects	91
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.38

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (68.595 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (15.703 % of family members)
Environment Ontology (ENVO)	Unclassified (28.926 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (40.496 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 36.71% β-sheet: 0.00% Coil/Unstructured: 63.29%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.38
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.38
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 121 Family Scaffolds
PF00076	RRM_1	4.96
PF00210	Ferritin	4.96
PF04545	Sigma70_r4	4.13
PF10722	YbjN	1.65
PF13610	DDE_Tnp_IS240	1.65
PF02771	Acyl-CoA_dh_N	0.83
PF13180	PDZ_2	0.83
PF04226	Transgly_assoc	0.83
PF00011	HSP20	0.83
PF01609	DDE_Tnp_1	0.83
PF03914	CBF	0.83
PF03992	ABM	0.83
PF12681	Glyoxalase_2	0.83
PF13282	DUF4070	0.83

COG ID	Name	Functional Category	% Frequency in 121 Family Scaffolds
COG0071	Small heat shock protein IbpA, HSP20 family	Posttranslational modification, protein turnover, chaperones [O]	0.83
COG1960	Acyl-CoA dehydrogenase related to the alkylation response protein AidB	Lipid transport and metabolism [I]	0.83
COG2261	Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family	General function prediction only [R]	0.83
COG3039	Transposase and inactivated derivatives, IS5 family	Mobilome: prophages, transposons [X]	0.83
COG3293	Transposase	Mobilome: prophages, transposons [X]	0.83
COG3385	IS4 transposase InsG	Mobilome: prophages, transposons [X]	0.83
COG5421	Transposase	Mobilome: prophages, transposons [X]	0.83
COG5433	Predicted transposase YbfD/YdcC associated with H repeats	Mobilome: prophages, transposons [X]	0.83
COG5659	SRSO17 transposase	Mobilome: prophages, transposons [X]	0.83

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.60 %
All Organisms	root	All Organisms	31.40 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.60 %
cellular organisms	root	All Organisms → cellular organisms	31.40 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.60 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	30.58 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.60 %
Nitrospinae/Tectomicrobia group	clade	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group	14.88 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.65 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.83 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.83 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.60 %
Candidatus Tectomicrobia	phylum	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia	14.88 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	0.83 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.83 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.83 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.83 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.60 %
Candidatus Entotheonella	genus	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	14.88 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.83 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.83 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	0.83 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.83 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.60 %
Candidatus Entotheonella factor	species	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella → Candidatus Entotheonella factor	2.48 %
unclassified Cyanobacteria	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria	0.83 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.83 %
Candidatus Entotheonella palauensis	species	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella → Candidatus Entotheonella palauensis	0.83 %
Desulfuromonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales	0.83 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.83 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.60 %
Candidatus Entotheonella factor	species	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella → Candidatus Entotheonella factor	2.48 %
Cyanobacteria bacterium 13_1_40CM_2_61_4	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → Cyanobacteria bacterium 13_1_40CM_2_61_4	0.83 %
Geobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae	0.83 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.83 %
Candidatus Entotheonella palauensis	species	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella → Candidatus Entotheonella palauensis	0.83 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.83 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.60 %
Candidatus Entotheonella factor	species	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella → Candidatus Entotheonella factor	2.48 %
Geothermobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → Geothermobacter	0.83 %
Cyanobacteria bacterium 13_1_40CM_2_61_4	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → Cyanobacteria bacterium 13_1_40CM_2_61_4	0.83 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.83 %
Candidatus Entotheonella palauensis	species	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella → Candidatus Entotheonella palauensis	0.83 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.83 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.60 %
Candidatus Entotheonella factor	species	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella → Candidatus Entotheonella factor	2.48 %
Geothermobacter ehrlichii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → Geothermobacter → Geothermobacter ehrlichii	0.83 %
Cyanobacteria bacterium 13_1_40CM_2_61_4	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → Cyanobacteria bacterium 13_1_40CM_2_61_4	0.83 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.83 %
Candidatus Entotheonella palauensis	species	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella → Candidatus Entotheonella palauensis	0.83 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.83 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.83 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2228664022\|INPgaii200_c1123290	Not Available	834	Open in IMG/M
3300000550\|F24TB_10159267	Not Available	652	Open in IMG/M
3300000550\|F24TB_10240606	Not Available	2058	Open in IMG/M
3300000787\|JGI11643J11755_11770653	Not Available	672	Open in IMG/M
3300003998\|Ga0055472_10225123	Not Available	585	Open in IMG/M
3300004463\|Ga0063356_105933446	Not Available	524	Open in IMG/M
3300004798\|Ga0058859_11779561	Not Available	1364	Open in IMG/M
3300005093\|Ga0062594_100565779	Not Available	984	Open in IMG/M
3300005174\|Ga0066680_10971006	Not Available	500	Open in IMG/M
3300005176\|Ga0066679_10307284	Not Available	1032	Open in IMG/M
3300005289\|Ga0065704_10477506	Not Available	684	Open in IMG/M
3300005294\|Ga0065705_10049974	Not Available	899	Open in IMG/M
3300005295\|Ga0065707_10443261	Not Available	808	Open in IMG/M
3300005441\|Ga0070700_101538976	Not Available	566	Open in IMG/M
3300005577\|Ga0068857_100344977	All Organisms → cellular organisms → Bacteria	1378	Open in IMG/M
3300005840\|Ga0068870_10457476	Not Available	842	Open in IMG/M
3300006047\|Ga0075024_100531868	Not Available	621	Open in IMG/M
3300006049\|Ga0075417_10100279	Not Available	1313	Open in IMG/M
3300006049\|Ga0075417_10344239	Not Available	729	Open in IMG/M
3300006049\|Ga0075417_10546539	Not Available	585	Open in IMG/M
3300006049\|Ga0075417_10708136	Not Available	518	Open in IMG/M
3300006844\|Ga0075428_101177127	Not Available	808	Open in IMG/M
3300006844\|Ga0075428_101273612	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella → Candidatus Entotheonella factor	774	Open in IMG/M
3300006845\|Ga0075421_101222858	Not Available	836	Open in IMG/M
3300006846\|Ga0075430_100486275	Not Available	1019	Open in IMG/M
3300006847\|Ga0075431_100687412	Not Available	1001	Open in IMG/M
3300006871\|Ga0075434_100749179	Not Available	994	Open in IMG/M
3300006881\|Ga0068865_102115179	Not Available	512	Open in IMG/M
3300007255\|Ga0099791_10067924	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	1613	Open in IMG/M
3300009012\|Ga0066710_100065196	Not Available	4632	Open in IMG/M
3300009090\|Ga0099827_11752329	Not Available	541	Open in IMG/M
3300009100\|Ga0075418_10922374	All Organisms → cellular organisms → Bacteria	944	Open in IMG/M
3300009100\|Ga0075418_11725392	Not Available	681	Open in IMG/M
3300009137\|Ga0066709_100089498	All Organisms → cellular organisms → Bacteria	3717	Open in IMG/M
3300009137\|Ga0066709_104072935	Not Available	532	Open in IMG/M
3300009147\|Ga0114129_11538633	Not Available	816	Open in IMG/M
3300009162\|Ga0075423_10186956	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	2174	Open in IMG/M
3300009553\|Ga0105249_10342614	Not Available	1512	Open in IMG/M
3300010106\|Ga0127472_1113624	Not Available	741	Open in IMG/M
3300010124\|Ga0127498_1150479	Not Available	908	Open in IMG/M
3300010362\|Ga0126377_11891472	Not Available	672	Open in IMG/M
3300010366\|Ga0126379_10345794	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	1515	Open in IMG/M
3300012206\|Ga0137380_11620962	Not Available	531	Open in IMG/M
3300012209\|Ga0137379_10879295	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	801	Open in IMG/M
3300012349\|Ga0137387_10566349	Not Available	824	Open in IMG/M
3300012357\|Ga0137384_10823672	Not Available	750	Open in IMG/M
3300012376\|Ga0134032_1039066	Not Available	3291	Open in IMG/M
3300012390\|Ga0134054_1273504	Not Available	545	Open in IMG/M
3300012401\|Ga0134055_1089023	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	614	Open in IMG/M
3300012402\|Ga0134059_1017460	Not Available	1355	Open in IMG/M
3300012407\|Ga0134050_1083913	Not Available	509	Open in IMG/M
3300012685\|Ga0137397_10400528	All Organisms → cellular organisms → Bacteria	1022	Open in IMG/M
3300012685\|Ga0137397_10459151	All Organisms → cellular organisms → Bacteria	949	Open in IMG/M
3300012925\|Ga0137419_10289298	Not Available	1249	Open in IMG/M
3300012944\|Ga0137410_11698760	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	555	Open in IMG/M
3300013306\|Ga0163162_10198867	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella → Candidatus Entotheonella palauensis	2133	Open in IMG/M
3300013306\|Ga0163162_10376302	Not Available	1553	Open in IMG/M
3300014745\|Ga0157377_11032355	Not Available	625	Open in IMG/M
3300015241\|Ga0137418_10305979	Not Available	1327	Open in IMG/M
3300015241\|Ga0137418_10800756	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	706	Open in IMG/M
3300015371\|Ga0132258_10321276	Not Available	3815	Open in IMG/M
3300015372\|Ga0132256_103258030	Not Available	546	Open in IMG/M
3300015374\|Ga0132255_103671974	Not Available	652	Open in IMG/M
3300019208\|Ga0180110_1058704	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella → Candidatus Entotheonella factor	1508	Open in IMG/M
3300019228\|Ga0180119_1055889	Not Available	545	Open in IMG/M
3300019229\|Ga0180116_1262210	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella → Candidatus Entotheonella factor	1047	Open in IMG/M
3300019232\|Ga0180114_1148521	All Organisms → cellular organisms → Bacteria	866	Open in IMG/M
3300019248\|Ga0180117_1179150	All Organisms → cellular organisms → Bacteria	1081	Open in IMG/M
3300019249\|Ga0184648_1070035	Not Available	670	Open in IMG/M
3300019249\|Ga0184648_1222553	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → Cyanobacteria bacterium 13_1_40CM_2_61_4	1733	Open in IMG/M
3300019249\|Ga0184648_1246544	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	759	Open in IMG/M
3300019257\|Ga0180115_1329534	All Organisms → cellular organisms → Bacteria	1912	Open in IMG/M
3300019279\|Ga0184642_1145948	Not Available	504	Open in IMG/M
3300020065\|Ga0180113_1324767	All Organisms → cellular organisms → Bacteria	643	Open in IMG/M
3300020065\|Ga0180113_1425435	All Organisms → cellular organisms → Bacteria	1181	Open in IMG/M
3300025942\|Ga0207689_10086059	All Organisms → cellular organisms → Bacteria	2583	Open in IMG/M
3300027846\|Ga0209180_10265447	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	986	Open in IMG/M
3300027880\|Ga0209481_10072314	Not Available	1632	Open in IMG/M
3300027903\|Ga0209488_10175751	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	1617	Open in IMG/M
3300027909\|Ga0209382_10293398	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	1835	Open in IMG/M
3300027909\|Ga0209382_11109249	Not Available	816	Open in IMG/M
3300027915\|Ga0209069_10357017	All Organisms → cellular organisms → Eukaryota	790	Open in IMG/M
3300028380\|Ga0268265_10853712	Not Available	891	Open in IMG/M
3300028597\|Ga0247820_10751903	Not Available	683	Open in IMG/M
3300030551\|Ga0247638_1126433	Not Available	601	Open in IMG/M
3300030554\|Ga0247640_1136585	Not Available	597	Open in IMG/M
3300030554\|Ga0247640_1212115	Not Available	501	Open in IMG/M
3300030563\|Ga0247653_1006170	Not Available	871	Open in IMG/M
3300030563\|Ga0247653_1062402	Not Available	570	Open in IMG/M
3300030571\|Ga0247652_1000222	All Organisms → cellular organisms → Bacteria	1772	Open in IMG/M
3300030574\|Ga0247648_1002378	Not Available	1565	Open in IMG/M
3300030574\|Ga0247648_1139032	Not Available	584	Open in IMG/M
3300030585\|Ga0247639_1009702	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → Geothermobacter → Geothermobacter ehrlichii	1302	Open in IMG/M
3300030592\|Ga0247612_1014936	Not Available	1134	Open in IMG/M
3300030592\|Ga0247612_1098855	Not Available	667	Open in IMG/M
3300030592\|Ga0247612_1115729	Not Available	632	Open in IMG/M
3300030601\|Ga0247650_1064540	Not Available	645	Open in IMG/M
3300030607\|Ga0247615_10130304	Not Available	760	Open in IMG/M
3300030608\|Ga0247651_10003919	All Organisms → cellular organisms → Bacteria	1494	Open in IMG/M
3300030608\|Ga0247651_10269252	Not Available	553	Open in IMG/M
3300030628\|Ga0247629_10075511	All Organisms → cellular organisms → Bacteria	934	Open in IMG/M
3300030634\|Ga0247636_10057713	Not Available	954	Open in IMG/M
3300030635\|Ga0247627_10001700	All Organisms → cellular organisms → Bacteria	1556	Open in IMG/M
3300030830\|Ga0308205_1003735	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	1310	Open in IMG/M
3300030830\|Ga0308205_1005664	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	1146	Open in IMG/M
3300030990\|Ga0308178_1051540	Not Available	771	Open in IMG/M
3300031058\|Ga0308189_10039279	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	1252	Open in IMG/M
3300031092\|Ga0308204_10026800	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	1243	Open in IMG/M
3300031547\|Ga0310887_11017629	Not Available	529	Open in IMG/M
3300031854\|Ga0310904_11289915	Not Available	529	Open in IMG/M
3300032012\|Ga0310902_10640172	Not Available	710	Open in IMG/M
3300034448\|Ga0370540_08485	Not Available	624	Open in IMG/M
3300034643\|Ga0370545_011268	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1356	Open in IMG/M
3300034643\|Ga0370545_049245	Not Available	814	Open in IMG/M
3300034643\|Ga0370545_079053	Not Available	686	Open in IMG/M
3300034643\|Ga0370545_102470	Not Available	624	Open in IMG/M
3300034643\|Ga0370545_125828	Not Available	577	Open in IMG/M
3300034643\|Ga0370545_171667	Not Available	507	Open in IMG/M
3300034660\|Ga0314781_088654	Not Available	608	Open in IMG/M
3300034664\|Ga0314786_148316	Not Available	547	Open in IMG/M
3300034680\|Ga0370541_007015	Not Available	1060	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	73.55%
Host-Associated	Host-Associated	26.45%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	61.16%
Plants	Host-Associated → Plants	25.62%
Aquatic	Environmental → Aquatic	12.40%
Human	Host-Associated → Human	0.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	61.16%
Rhizosphere	Host-Associated → Plants → Rhizosphere	16.53%
Freshwater	Environmental → Aquatic → Freshwater	9.92%
Rhizoplane	Host-Associated → Plants → Rhizoplane	9.09%
Sediment	Environmental → Aquatic → Sediment	1.65%
Marine	Environmental → Aquatic → Marine	0.83%
Digestive System	Host-Associated → Human → Digestive System	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	58.68%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	15.70%
Sediment	Environmental → Aquatic → Freshwater → Sediment	9.92%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	6.61%
Loam	Environmental → Terrestrial → Soil → Loam	2.48%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.48%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.65%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.83%
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	0.83%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	31.41%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	15.70%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	15.70%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	9.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	6.61%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.79%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	4.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.48%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.65%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.65%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.83%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.83%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.83%
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	0.83%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	15.70%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	14.05%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	11.57%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	10.74%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	9.92%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	5.79%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	4.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.31%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.48%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.48%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.65%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.65%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	1.65%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.65%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.65%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.65%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.83%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.83%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	0.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere	0.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.83%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.83%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.83%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2228664022	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300000787	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300003998	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleC_D2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004798	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - roots SR-2 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental	Open in IMG/M
3300005289	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2	Host-Associated	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005840	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2	Host-Associated	Open in IMG/M
3300006047	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013	Environmental	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010106	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_20_5_0_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010124	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_5_4_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012376	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_5_0_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012390	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_8_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012401	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_16_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012402	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_8_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012407	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_16_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300019208	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT231_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019228	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT790_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019229	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT660_1_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019232	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT530_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019248	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT660_2_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019249	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019257	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT660_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019279	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020065	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT499_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027880	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes)	Host-Associated	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300027915	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes)	Environmental	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028597	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day14	Environmental	Open in IMG/M
3300030551	Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Cb3 (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030554	Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Cnb5 (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030563	Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Dnb6 (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030571	Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Dnb5 (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030574	Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Db1 (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030585	Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Cnb4 (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030592	Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Ab1 (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030601	Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Db3 (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030607	Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Anb4 (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030608	Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Dnb4 (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030628	Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Bnb6 (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030634	Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Cb1 (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030635	Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Bnb4 (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030830	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_368 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030990	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_149 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031058	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_184 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031092	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_367 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031547	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4	Environmental	Open in IMG/M
3300031854	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1	Environmental	Open in IMG/M
3300032012	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D3	Environmental	Open in IMG/M
3300034448	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_115 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034643	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_120 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034660	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60R2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034664	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20R3 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034680	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_116 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPgaii200_11232901	2228664022	Soil	MTEPSKNPILNERVKPAMLNPLVKYITPSADIKWILLCFGIALAIFAIAYI
F24TB_101592672	3300000550	Soil	MGRMGSTMTEPSKNPILNERVKPAMLNPLVKYITPSTDIKWVLLCVGVALAIFAIAYI*
F24TB_102406061	3300000550	Soil	MTVPSKNPILNERVKPGMLNPLVKYITPSTDIKWILLCFGIALAIFAIAYTVG*
JGI11643J11755_117706532	3300000787	Soil	MTEPSKNLILNERVKPAMLNPLVKYITPSXDIKWXLXCXGXALAIFAIAYI*
Ga0055472_102251232	3300003998	Natural And Restored Wetlands	MTEPSTNPILNERVKPAMLNPPVKHVTPSSDIKWVLVCVGIALAIFALAYI*
Ga0063356_1059334461	3300004463	Arabidopsis Thaliana Rhizosphere	MTEPGTNPILNERVKPAWLNPLVKHVTASTDIKWILLSVGIALAIFAIANI*
Ga0058859_117795612	3300004798	Host-Associated	MTEPNKNPILNERVKPAMLNPLVKHIVPSADIKWVLLCFGIALAIFAVAYI*
Ga0062594_1005657792	3300005093	Soil	MTEPGKNPILNERVKPAWLNPLVKHITASTDIKWILLSVGIALAIFAIANT*
Ga0066680_109710061	3300005174	Soil	MTEPSKNPILNERVKPAMLNPLVKHITPSADIKWVLLCVGIVLAIFAMAYI*
Ga0066679_103072841	3300005176	Soil	MTEPSKNPILNERVKPGMLNPLVQYITPSADIKWVFLCVGIALAIFAIAYT*
Ga0065704_104775062	3300005289	Switchgrass Rhizosphere	MTEPSKNLILNERVKPAMLNPLVKYITPSTDIKWVLVCVGVALAIFAIA*
Ga0065705_100499741	3300005294	Switchgrass Rhizosphere	RKRFLTMTEPSKNLILNERVKPAMLNPLVKYITPSTDIKWVLVCVGVALAIFAIAYI*
Ga0065707_104432612	3300005295	Switchgrass Rhizosphere	MTEPSKNLILNERVKPAMLNPLVKYITPSTDIKWVLVCVGVALAIFAIAYI*
Ga0070700_1015389762	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	MTEPGKNPILNERVKPAWLNPLVKHITASTDIKWILLSVGIALAIF
Ga0068857_1003449775	3300005577	Corn Rhizosphere	PSKNPIINERVKPAMLNPLVKHIVPSADIKWVLLCCGIALAIFAIAYI*
Ga0068870_104574762	3300005840	Miscanthus Rhizosphere	MTDPRKNPILNERMKPAMLNPLVKYLTPSTDTKWVLLCCGMALAIFALAYL*
Ga0075024_1005318681	3300006047	Watersheds	MTESSTNPILNERVKPAGLNPFVKHMTPSADIKWVLVCLGIALAIFTIAYTVG*
Ga0075417_101002793	3300006049	Populus Rhizosphere	MTEPSKNPILNERVKPAMLNPLVKYITPSADIKWILLCFGIALAIFAIAYI*
Ga0075417_103442392	3300006049	Populus Rhizosphere	MTVPSKNPILNERVKPGMLNPLVKYITPSTDIKWVLLCFGIALAIFAIAYI*
Ga0075417_105465391	3300006049	Populus Rhizosphere	MMTKPSENPILNERVKPALLNPDVKPIAPSADILWVLLCVSLSLGIFALAYTLG*
Ga0075417_107081361	3300006049	Populus Rhizosphere	MTEPSKNSILHERVKPGMLNPLVKYITPSTDMKWILLCFGIALAIFAIAYI*
Ga0075428_1011771272	3300006844	Populus Rhizosphere	MTVPSKNPILNERVKPGMLNPLVKYITPSTDIKWILLCFGIALAIFALAYI*
Ga0075428_1012736121	3300006844	Populus Rhizosphere	IERKRFLTMTEPGTNPILNERVKPAWLNPLVKHVTASTDIKWILLSVGIALAIFAIANI*
Ga0075421_1012228581	3300006845	Populus Rhizosphere	MPEPSKNPILNERVKPAMLNPLVKYLTPSADIKWVLLCFGIALAIFAIAYI*
Ga0075430_1004862753	3300006846	Populus Rhizosphere	EPSKNPILNERVKPAMLNPLVKYITPSADIKWILLCFGIALAIFAIAYI*
Ga0075431_1006874123	3300006847	Populus Rhizosphere	AEEVLTMTEPSKNPILNERVKPAMLNPLVKYITPSADIKWILLCFGIALAIFAIAYI*
Ga0075434_1007491792	3300006871	Populus Rhizosphere	KRFLTMTEPSKNPILNERVKPPMLNPLVKYVTPSADIKWVLLCFGIALAIFAIAYI*
Ga0068865_1021151791	3300006881	Miscanthus Rhizosphere	MTEPNKNPILNERVKPAMLNPLVKHIVPSADIKWVLLCFGIALAIFAVAY
Ga0099791_100679241	3300007255	Vadose Zone Soil	MMTEPSANPILKERVKPALLNPQVKPITPAADMTWVLLCVSISLGIFALALTLG*
Ga0066710_1000651966	3300009012	Grasslands Soil	MTEPSKNPILNERVKPAMLNPLVKHITPSADIKWVLLCVGIVLAIFAMAYI
Ga0099827_117523292	3300009090	Vadose Zone Soil	MTEPSKNPILTERVKPAMLNPLVKYITPSADIKWVLLCFG
Ga0075418_109223742	3300009100	Populus Rhizosphere	MTEPSKNPILNERVKPPMLNPLVKYVTPSADIKWVLLCFGIALAIFAIAYI*
Ga0075418_117253921	3300009100	Populus Rhizosphere	MMTAQHDNPILDEPVKPPLLNPPVKPIAPSADLTWVLLCVSMSLGIFALALTLG*
Ga0066709_1000894987	3300009137	Grasslands Soil	TTTEPRKNPILNERVKPAWLNPSVTYVTASAAIKWILLGVGIAVAIFAIAYI*
Ga0066709_1040729351	3300009137	Grasslands Soil	LTMTEPSKNPILNERVKPGMLNPLVQYITPSADIKWVFLCVGIALAIFAIAYT*
Ga0114129_115386332	3300009147	Populus Rhizosphere	MTEPSKNPILNERVKPAWLNPSVKHVTASADIKWSLLGVGIAVAIFAIAYI*
Ga0075423_101869562	3300009162	Populus Rhizosphere	MTEPRKNPILNERVKPGMLNPLVKYITPSTDIKWILLCFGIALAIFAIAYI*
Ga0105249_103426143	3300009553	Switchgrass Rhizosphere	MTEPSKNPILNEWVKPAMLNPPVKHITPSADINWVLLCIGIAELPWLFLL
Ga0127472_11136242	3300010106	Grasslands Soil	MTEPSKNPILNERVKPGMLNPLVKYITPSADIKWVFLCVGIALAIFAIAYT*
Ga0127498_11504792	3300010124	Grasslands Soil	MTVPSKNPILNERVKPGMLNPLVKYITPSTDIKWILLCFGIALAIFAIAYI*
Ga0126377_118914721	3300010362	Tropical Forest Soil	MKTEPSENPILHERVKPALLNPPVKPIAPSADITWVLLCVSLSLGIFALAYTLG*
Ga0126379_103457942	3300010366	Tropical Forest Soil	MRSEPRDNPILKERVKPPLLNPAVKPIAPAADLTWVLLCVSLSLGIFVLAYTLG*
Ga0137380_116209622	3300012206	Vadose Zone Soil	MTESRKNPILNERVKPAMLNPLVKHITPSADIKWVLLCFGMALAIFAMAYI*
Ga0137379_108792952	3300012209	Vadose Zone Soil	MMTEPNENPILNERVKPALLNPAVKPIAPSADITWVLLCVSMSLGIFALAYTLG*
Ga0137387_105663492	3300012349	Vadose Zone Soil	MTESRKNPILNERVKPAMLNPLVKHITPSADIKWVLLCFGITLAIFAMAYI*
Ga0137384_108236721	3300012357	Vadose Zone Soil	MTELNKNPILNERVKPAMLNPLVKHITPSADIKWVLLCFGITLAIFAMAYI*
Ga0134032_10390664	3300012376	Grasslands Soil	MTEPSKNPILNEQVKPAMLNPLVKYITPSADIKWVFLCVGIALAIFAIAYT*
Ga0134054_12735041	3300012390	Grasslands Soil	MMTAPSQNPILNERVKPALLNPAVKPIAPSTDITWVLLCVSMSLGIFALAYTLG*
Ga0134055_10890231	3300012401	Grasslands Soil	MTVPSKNPILNERVKPEMLNPLVKYITPSTDIKWILLCFGIALAVFAIAYV*
Ga0134059_10174603	3300012402	Grasslands Soil	MTVPSKNPIINERVKPGMLNPLVKYITPSADIKWILLCFGIALAVFAIPYV*
Ga0134050_10839131	3300012407	Grasslands Soil	MTEPSKNPILNERVKPAMLNPLVKHITPSADIKWVLLCFGMALAIFAMAYI*
Ga0137397_104005282	3300012685	Vadose Zone Soil	MMTEPSENPILNERVKPALLNPAVKPIAPSADITWVLLCVGMSLGIFALAYPLG*
Ga0137397_104591512	3300012685	Vadose Zone Soil	MTEPSANPILKERVKPALLNPQVKPITPAADMTWVLLCVSISLGIFALALTLG*
Ga0137419_102892981	3300012925	Vadose Zone Soil	NPILNERVKPAGLNPLVKYITPSADIKWVLVCLGIALAIFTIAYTVG*
Ga0137410_116987602	3300012944	Vadose Zone Soil	MMTKSSENPILNERVKPALLNPAVKPIAPSADITWVLLCVGMSLGIFAL
Ga0163162_101988671	3300013306	Switchgrass Rhizosphere	MTVPSKNPILNERVKPGMLNPLVKYITPSTDIKWVLLCFGVALAIFAIAYI*
Ga0163162_103763023	3300013306	Switchgrass Rhizosphere	MTEPSKNPILNEWVKPAMLNPPVKHITPSADINWVLLCIGIAELPWLFLL*
Ga0157377_110323552	3300014745	Miscanthus Rhizosphere	MTEPNKNPILNERVKPAMLNPLVKHIVPSADIKWVPLCFGIALAIFAVAYI*
Ga0137418_103059791	3300015241	Vadose Zone Soil	LTMTESSKNPILNERVKPAGLNPLVKHMTPSADIKWVLVCLGIALAIFTIAYTVG*
Ga0137418_108007562	3300015241	Vadose Zone Soil	MMTEPSENPILNERVKPALLNPAVKPIAPSADITWVLLCVGMSLGIFALAYTLG*
Ga0132258_103212762	3300015371	Arabidopsis Rhizosphere	MTEPSKNPILNERVKPAMLNPLVKYITPSADIKWVLLCVGVALAIFAIALSLSRLNH*
Ga0132256_1032580302	3300015372	Arabidopsis Rhizosphere	MPEPSKNPILNERVKPAMLTPPVKHVTPSTDIKWVLLCCGIALAIFAIAYTVGGVSNKGW
Ga0132255_1036719741	3300015374	Arabidopsis Rhizosphere	MTEPSKNPILNERVKPAMLNPLVKYITPSTDIKWILLCFGIALAIFAIAYI*
Ga0180110_10587041	3300019208	Groundwater Sediment	TMTQPSKNPLLHERVKPAWLNPLVKHVTAATDIKWILLSVGIALAIFALAYS
Ga0180119_10558891	3300019228	Groundwater Sediment	MTEPGTNPILNERVKPAWLNPLVKHVTASTDIKWILLSVGIALAIFAIANI
Ga0180116_12622102	3300019229	Groundwater Sediment	MTEPGKNPILNERVKPAWLNPLVKHVTASTDIKWILLSVGIALAIFAIAHI
Ga0180114_11485211	3300019232	Groundwater Sediment	MTKPGTHPILHARVKPACLNPLVKHVTASTDVKWILLGVGIALTIFA
Ga0180117_11791502	3300019248	Groundwater Sediment	MTEPSNNPILNERVKPAMLNPPVKHITPSADIKWVLLCIGIALAIFAIAYTVG
Ga0184648_10700351	3300019249	Groundwater Sediment	MTEPSKNPILTERVKPAMLNPLVKYITPSADIKWVLLCFGIALTIFAIAYI
Ga0184648_12225533	3300019249	Groundwater Sediment	MTEPGKNSILNERVKPAWLNPLVKHVTASTDIKWILLGVGIALAIFAIANT
Ga0184648_12465442	3300019249	Groundwater Sediment	MMTEPSENPILKERVKPALLNPRVKPIAPSADMIWVLLCVSISLGIFALALTLG
Ga0180115_13295341	3300019257	Groundwater Sediment	MTKPGTHPILHARVKPACLNPLVKHVTASTDVKWILLGVGIALTIFAIAYT
Ga0184642_11459481	3300019279	Groundwater Sediment	MTESSKNPILNERVKPAGLNPPVKHMTPSADIKWVLVCLGIALAIFTIAYTVG
Ga0180113_13247671	3300020065	Groundwater Sediment	MTKPGTHPILHARVKPACLHPLVKHVTASTDIKWILL
Ga0180113_14254352	3300020065	Groundwater Sediment	MTEASKNPILNERVKPAMLNPPVKHVTPSADIKWVLLCFGIALAIFAIAYSVG
Ga0207689_100860591	3300025942	Miscanthus Rhizosphere	MTEPNKNPILNERVKPGMLNPLVKYITPSTDIKWILLCFGIALAIFAIAYI
Ga0209180_102654472	3300027846	Vadose Zone Soil	MMTAPSQNPILNERVKPALLNPVVKPVAPSADIIWVLLCVSVSLGIFALAYTLG
Ga0209481_100723142	3300027880	Populus Rhizosphere	MTEPSKNPILNERVKPPMLNPLVKYVTPSADIKWVLLCFGIALAIFAIAYI
Ga0209488_101757512	3300027903	Vadose Zone Soil	MMTEPSENPILNERVKPALLNPAVKPIAPSADITWVLLCVGMSLGIFALAYTLG
Ga0209382_102933983	3300027909	Populus Rhizosphere	MTEPSKNPILNERVKPPMLNPLVKYVTPSADIKWVLLCFGVALAIFAIAYI
Ga0209382_111092491	3300027909	Populus Rhizosphere	MTEPSKNSILHERVKPGMLNPLVKYITPSTDMKWILLCFGIALAIFAIAYI
Ga0209069_103570172	3300027915	Watersheds	MTESSTNPILNERVKPAGLNPFVKHMTPSADIKWVLVCLGIALAIFTIAYTVG
Ga0268265_108537122	3300028380	Switchgrass Rhizosphere	MTEPNKNPILNERVKPAMLNPLVKHIVPSADIKWVLLCFGIALAIFAVAYI
Ga0247820_107519031	3300028597	Soil	MTEPSKNSILNERVKPGMLNPLVKYITPSTDMKWILLCFGIALAIFAIAYI
Ga0247638_11264331	3300030551	Soil	MERKKFLTMTKPGTHPILHARVKPACLNPLVKHVTASTDITWILLGVGIAVALVALASS
Ga0247640_11365851	3300030554	Soil	PSKNPILNERVKPAMLNPVVKYITPSTDIKWVLLCFGIALAIFAIAYI
Ga0247640_12121151	3300030554	Soil	GTHPILHARVKPACLNPLVQHVTASTDIKWILLGVGIAVALFALASS
Ga0247653_10061702	3300030563	Soil	MERKKFLTMTKPGTHPILHARVKPACLNPLVQHVTASTDIKWILLGVGIAVALFALASS
Ga0247653_10624021	3300030563	Soil	MTQPSKNPLLHERVKPAWLNPLVKHVTAATDIKWILLGVGIAVALFVLAYS
Ga0247652_10002223	3300030571	Soil	MERKKFLPMTKPGTHPILHARVKPACLNPLVKHVTASTDIKWILLGVGIAVALFALASS
Ga0247648_10023781	3300030574	Soil	MTQPSKNPLLHERVKPAWLNPLVKHVTAATDIKWILLG
Ga0247648_11390322	3300030574	Soil	LTMTQPSKNPLLHERVKPAWLNPLVKHVTAATDIKWILLGVGIAVALFVLAYS
Ga0247639_10097021	3300030585	Soil	MERKKFLTMTKPGTHPILHARVKPACLNPLVKHVTASTDIKWILLGVGIA
Ga0247612_10149363	3300030592	Soil	MTQPSKNPLLHERVKPAWLNPLVKHVTAATDIKWILL
Ga0247612_10988551	3300030592	Soil	MTEPRENPLLNARMKPAMLNPLVKDIIPSADIKWVLLCVGIALAIFAIAYI
Ga0247612_11157292	3300030592	Soil	MTKPGTHPILHARVKPACLNPLVKHVTASTDITWILLGVGIAVALFALASS
Ga0247650_10645401	3300030601	Soil	GTHPILHARVKPACLNPLVKHVTASTDITWILLGVGIAVALVALASS
Ga0247615_101303042	3300030607	Soil	MERKKFLTMTKPGTHPILHARVKPACLNPLVKHVTASTDIKWILLGVGIAVALFARASS
Ga0247651_100039192	3300030608	Soil	MERKKFLTMTKPGTHPILHARVKPACLNPLVKHVTASTDIKWILLGVGIAVALFALASS
Ga0247651_102692521	3300030608	Soil	MTDPRNNPILNERMKPAMLNPLVKDITPSADIKWVLLCVGIALAIFAIAL
Ga0247629_100755112	3300030628	Soil	MTKPGTHPILHARVKPACLNPLVKHVTASTDIKWILLGVGIAV
Ga0247636_100577132	3300030634	Soil	MTKPGTHPILHARVKPACLNPLVKHVTASTDIKWILLGVGIAVALVALASS
Ga0247627_100017002	3300030635	Soil	MTKPGTHPILHARVKPACLNPLVKHVTASTDITWILLGVGIAVALVALASS
Ga0308205_10037352	3300030830	Soil	MMTEPSENPILKKRVKPALLNPRVKPIAPSADMTWVLLCVSISLGIFALALTLG
Ga0308205_10056642	3300030830	Soil	MMTEPSPNPILNERVKPPLLNPLVKPIAPSADILWVLLCVSLSLGIFILAYTLG
Ga0308178_10515402	3300030990	Soil	MTESSKNPILNERVKPAGLNPLVKHMTPSADIKWVLVCLGIALAIFTIAYTVG
Ga0308189_100392791	3300031058	Soil	MTTAPSQNPILNERVKPALLNPIAKPMAPSADILWVLLCISVGLGIFTLAYTLG
Ga0308204_100268002	3300031092	Soil	MMTEPSENPILKEQVKPALLNPRVKPIAPSADMTWVLLCVSISLGIFALALTLG
Ga0310887_110176291	3300031547	Soil	MTEPSKNSILHERVKPGMLNPLVKYITPSTDMKWILLCFGIALAIIAIAY
Ga0310904_112899152	3300031854	Soil	MTEPSKNSILHERVKPGMLNPLVKYITPSTDMKWILLCFGIALAI
Ga0310902_106401722	3300032012	Soil	MTEPSKNSILHERVKPGMLNPLVKYITPSTDMKWILLCFGIALAIFAI
Ga0370540_08485_243_404	3300034448	Soil	MTESSKNPILNERVKPAGLNPLVKHIIPSGDIKWVLVCFGIALAIFTIAYTLG
Ga0370545_011268_947_1102	3300034643	Soil	MTEPSKNPILTERVKPAMLNPLVRYITPSADIKWVLLCFGIALTIFAIAYI
Ga0370545_049245_190_345	3300034643	Soil	MTEPSKNPILTERVKPAMLNPLVQYITPSADIKWIFLCFGIALIIFAIAYI
Ga0370545_079053_152_319	3300034643	Soil	MLTEPGKNPILDESVKPAMLNPRVRYVVPSADIKWVLLCVGLAVAVFLTAIGVNM
Ga0370545_102470_140_307	3300034643	Soil	MTTEPGKNPILNESVKPAMLNPLVRYVIPSADIKWVLLCVGLAVAVFLTAMGVNM
Ga0370545_125828_188_355	3300034643	Soil	MMTEPGKNPILNESVKPAMLNPLVRYVIPSADIKWVLLCVGLAVAVFLTAMGVNM
Ga0370545_171667_188_343	3300034643	Soil	MTESRKNPILTERVKPAMLNPLVRYITPSADIKWVFLCFGIALTIFVIAYI
Ga0314781_088654_1_126	3300034660	Soil	MTEPSKNSILHERVKPGMLNPLVKYITPSTDMKWILLCFGIA
Ga0314786_148316_1_123	3300034664	Soil	MTEPSKNSILHERVKPGMLNPLVKYITPSTDMKWILLCFGI
Ga0370541_007015_124_285	3300034680	Soil	MTESSKNSILNEQVKPAGLNPPVKHMTPSADIKWVLVCLGIALAIFTIAYTVG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F072073

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences