Metagenome Family F072040

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F072040
Family Type	Metagenome
Number of Sequences	121
Average Sequence Length	54 residues
Representative Sequence	MTPDNGGFATAAYVLAALVYGAYVVSLKLRERRLRERLSRLESAARPASNRPAGA
Number of Associated Samples	94
Number of Associated Scaffolds	121

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	90.08 %
% of genes near scaffold ends (potentially truncated)	11.57 %
% of genes from short scaffolds (< 2000 bps)	85.95 %
Associated GOLD sequencing projects	82
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.54

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (81.818 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil (12.397 % of family members)
Environment Ontology (ENVO)	Unclassified (43.802 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (47.934 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 48.19% β-sheet: 0.00% Coil/Unstructured: 51.81%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.54
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.54
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 121 Family Scaffolds
PF00590	TP_methylase	57.85
PF01578	Cytochrom_C_asm	23.14
PF03379	CcmB	6.61
PF02602	HEM4	4.13
PF01379	Porphobil_deam	1.65
PF00005	ABC_tran	1.65
PF04995	CcmD	0.83
PF13458	Peripla_BP_6	0.83
PF01261	AP_endonuc_2	0.83
PF13378	MR_MLE_C	0.83

COG ID	Name	Functional Category	% Frequency in 121 Family Scaffolds
COG2386	ABC-type transport system involved in cytochrome c biogenesis, permease component	Posttranslational modification, protein turnover, chaperones [O]	6.61
COG1587	Uroporphyrinogen-III synthase	Coenzyme transport and metabolism [H]	4.13
COG0181	Porphobilinogen deaminase	Coenzyme transport and metabolism [H]	1.65
COG3114	Heme exporter protein D	Intracellular trafficking, secretion, and vesicular transport [U]	0.83

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	81.82 %
Unclassified	root	N/A	18.18 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	81.82 %
Unclassified	root	N/A	18.18 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	81.82 %
Unclassified	root	N/A	18.18 %

Name	Rank	Taxonomy	Distribution
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	27.27 %
Unclassified	root	N/A	18.18 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	27.27 %
Unclassified	root	N/A	18.18 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes	class	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes	23.97 %
Unclassified	root	N/A	18.18 %
unclassified Gemmatimonadetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes	2.48 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadales	order	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	23.97 %
Unclassified	root	N/A	18.18 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	2.48 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	23.97 %
Unclassified	root	N/A	18.18 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	2.48 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	18.18 %
unclassified Gemmatimonadaceae	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae	9.92 %
Gemmatirosa	genus	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa	9.92 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	2.48 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	18.18 %
Gemmatirosa kalamazoonesis	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	9.92 %
Gemmatimonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	9.92 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	2.48 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004153\|Ga0063455_100562551	All Organisms → cellular organisms → Bacteria	730	Open in IMG/M
3300004463\|Ga0063356_102786345	All Organisms → cellular organisms → Bacteria	753	Open in IMG/M
3300005327\|Ga0070658_11315032	All Organisms → cellular organisms → Bacteria	628	Open in IMG/M
3300005329\|Ga0070683_100284326	All Organisms → cellular organisms → Bacteria	1574	Open in IMG/M
3300005329\|Ga0070683_102145379	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	536	Open in IMG/M
3300005330\|Ga0070690_100014309	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	4707	Open in IMG/M
3300005331\|Ga0070670_100088295	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	2665	Open in IMG/M
3300005331\|Ga0070670_100996833	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	762	Open in IMG/M
3300005333\|Ga0070677_10204173	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	956	Open in IMG/M
3300005335\|Ga0070666_10735212	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	725	Open in IMG/M
3300005339\|Ga0070660_100893853	All Organisms → cellular organisms → Bacteria	749	Open in IMG/M
3300005339\|Ga0070660_101565234	All Organisms → cellular organisms → Bacteria	561	Open in IMG/M
3300005341\|Ga0070691_10576448	All Organisms → cellular organisms → Bacteria	661	Open in IMG/M
3300005347\|Ga0070668_101197740	All Organisms → cellular organisms → Bacteria	688	Open in IMG/M
3300005355\|Ga0070671_100052254	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	3398	Open in IMG/M
3300005355\|Ga0070671_100107128	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	2347	Open in IMG/M
3300005356\|Ga0070674_100933646	Not Available	758	Open in IMG/M
3300005364\|Ga0070673_100347534	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1315	Open in IMG/M
3300005366\|Ga0070659_100713460	All Organisms → cellular organisms → Bacteria	868	Open in IMG/M
3300005456\|Ga0070678_101046298	All Organisms → cellular organisms → Bacteria	752	Open in IMG/M
3300005530\|Ga0070679_101771663	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	566	Open in IMG/M
3300005535\|Ga0070684_101109105	Not Available	744	Open in IMG/M
3300005564\|Ga0070664_100084124	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	2746	Open in IMG/M
3300005616\|Ga0068852_100109641	All Organisms → cellular organisms → Bacteria	2507	Open in IMG/M
3300005618\|Ga0068864_100220697	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	1749	Open in IMG/M
3300005719\|Ga0068861_100861111	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	855	Open in IMG/M
3300005834\|Ga0068851_10527995	All Organisms → cellular organisms → Bacteria	711	Open in IMG/M
3300006031\|Ga0066651_10012515	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	3482	Open in IMG/M
3300006876\|Ga0079217_10054560	All Organisms → cellular organisms → Bacteria	1621	Open in IMG/M
3300006876\|Ga0079217_11346448	All Organisms → cellular organisms → Bacteria	554	Open in IMG/M
3300006894\|Ga0079215_10052357	All Organisms → cellular organisms → Bacteria	1591	Open in IMG/M
3300006918\|Ga0079216_10059321	All Organisms → cellular organisms → Bacteria	1696	Open in IMG/M
3300009100\|Ga0075418_10200627	All Organisms → cellular organisms → Bacteria	2124	Open in IMG/M
3300009147\|Ga0114129_13135342	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	539	Open in IMG/M
3300009156\|Ga0111538_10405867	All Organisms → cellular organisms → Bacteria	1726	Open in IMG/M
3300009177\|Ga0105248_11894044	All Organisms → cellular organisms → Bacteria	677	Open in IMG/M
3300009789\|Ga0126307_10064310	All Organisms → cellular organisms → Bacteria	2880	Open in IMG/M
3300009789\|Ga0126307_10716758	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	807	Open in IMG/M
3300009840\|Ga0126313_10313775	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	1229	Open in IMG/M
3300010036\|Ga0126305_10168800	Not Available	1372	Open in IMG/M
3300010036\|Ga0126305_10496466	All Organisms → cellular organisms → Bacteria	814	Open in IMG/M
3300010037\|Ga0126304_10415611	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	899	Open in IMG/M
3300010037\|Ga0126304_10461302	Not Available	851	Open in IMG/M
3300010039\|Ga0126309_10632395	All Organisms → cellular organisms → Bacteria	678	Open in IMG/M
3300010040\|Ga0126308_11130393	All Organisms → cellular organisms → Bacteria	552	Open in IMG/M
3300010041\|Ga0126312_10708292	All Organisms → cellular organisms → Bacteria	727	Open in IMG/M
3300010042\|Ga0126314_11388668	All Organisms → cellular organisms → Bacteria	527	Open in IMG/M
3300010045\|Ga0126311_10044099	All Organisms → cellular organisms → Bacteria	2830	Open in IMG/M
3300010045\|Ga0126311_11116918	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	649	Open in IMG/M
3300010166\|Ga0126306_10021978	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	4220	Open in IMG/M
3300010166\|Ga0126306_10238355	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	1384	Open in IMG/M
3300012046\|Ga0136634_10074158	All Organisms → cellular organisms → Bacteria	1257	Open in IMG/M
3300012908\|Ga0157286_10243327	All Organisms → cellular organisms → Bacteria	630	Open in IMG/M
3300013296\|Ga0157374_11343183	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	737	Open in IMG/M
3300013306\|Ga0163162_10679181	All Organisms → cellular organisms → Bacteria	1152	Open in IMG/M
3300015077\|Ga0173483_10355741	All Organisms → cellular organisms → Bacteria	737	Open in IMG/M
3300018465\|Ga0190269_10611203	All Organisms → cellular organisms → Bacteria	739	Open in IMG/M
3300018469\|Ga0190270_12089844	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	626	Open in IMG/M
3300018476\|Ga0190274_10225338	All Organisms → cellular organisms → Bacteria	1675	Open in IMG/M
3300018920\|Ga0190273_10903371	All Organisms → cellular organisms → Bacteria	715	Open in IMG/M
3300018920\|Ga0190273_11625952	All Organisms → cellular organisms → Bacteria	578	Open in IMG/M
3300019356\|Ga0173481_10341970	All Organisms → cellular organisms → Bacteria	711	Open in IMG/M
3300021445\|Ga0182009_10021274	All Organisms → cellular organisms → Bacteria	2462	Open in IMG/M
3300022756\|Ga0222622_10253116	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	1194	Open in IMG/M
3300022756\|Ga0222622_10855483	All Organisms → cellular organisms → Bacteria	666	Open in IMG/M
3300025315\|Ga0207697_10173449	All Organisms → cellular organisms → Bacteria	944	Open in IMG/M
3300025893\|Ga0207682_10106238	All Organisms → cellular organisms → Bacteria	1232	Open in IMG/M
3300025901\|Ga0207688_10325771	All Organisms → cellular organisms → Bacteria	943	Open in IMG/M
3300025909\|Ga0207705_10203160	All Organisms → cellular organisms → Bacteria	1502	Open in IMG/M
3300025920\|Ga0207649_10232673	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	1319	Open in IMG/M
3300025920\|Ga0207649_11197625	All Organisms → cellular organisms → Bacteria	600	Open in IMG/M
3300025920\|Ga0207649_11674926	Not Available	503	Open in IMG/M
3300025923\|Ga0207681_10738300	Not Available	820	Open in IMG/M
3300025925\|Ga0207650_10177450	All Organisms → cellular organisms → Bacteria	1696	Open in IMG/M
3300025931\|Ga0207644_10062127	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	2708	Open in IMG/M
3300025932\|Ga0207690_10212508	Not Available	1476	Open in IMG/M
3300025944\|Ga0207661_11432360	Not Available	634	Open in IMG/M
3300025945\|Ga0207679_11545092	Not Available	608	Open in IMG/M
3300026118\|Ga0207675_101236005	All Organisms → cellular organisms → Bacteria	767	Open in IMG/M
3300026121\|Ga0207683_11112015	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	733	Open in IMG/M
3300026121\|Ga0207683_11310528	Not Available	670	Open in IMG/M
3300026142\|Ga0207698_10009908	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	6096	Open in IMG/M
3300026142\|Ga0207698_12059843	All Organisms → cellular organisms → Bacteria	585	Open in IMG/M
3300026306\|Ga0209468_1123244	All Organisms → cellular organisms → Bacteria	765	Open in IMG/M
3300027637\|Ga0209818_1026424	All Organisms → cellular organisms → Bacteria	1296	Open in IMG/M
3300027639\|Ga0209387_1071125	All Organisms → cellular organisms → Bacteria	805	Open in IMG/M
3300027886\|Ga0209486_11085328	Not Available	543	Open in IMG/M
3300027909\|Ga0209382_11188665	Not Available	781	Open in IMG/M
3300028381\|Ga0268264_10861176	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	908	Open in IMG/M
3300028596\|Ga0247821_10924717	All Organisms → cellular organisms → Bacteria	581	Open in IMG/M
3300028768\|Ga0307280_10347062	Not Available	547	Open in IMG/M
3300028778\|Ga0307288_10039717	All Organisms → cellular organisms → Bacteria	1590	Open in IMG/M
3300028812\|Ga0247825_11089304	Not Available	582	Open in IMG/M
3300030336\|Ga0247826_11633625	All Organisms → cellular organisms → Bacteria	525	Open in IMG/M
3300030496\|Ga0268240_10005846	All Organisms → cellular organisms → Bacteria	1879	Open in IMG/M
3300031548\|Ga0307408_100101199	All Organisms → cellular organisms → Bacteria	2196	Open in IMG/M
3300031548\|Ga0307408_102424048	All Organisms → cellular organisms → Bacteria	509	Open in IMG/M
3300031716\|Ga0310813_10471723	All Organisms → cellular organisms → Bacteria	1092	Open in IMG/M
3300031731\|Ga0307405_10057847	All Organisms → cellular organisms → Bacteria	2437	Open in IMG/M
3300031731\|Ga0307405_10251330	All Organisms → cellular organisms → Bacteria	1316	Open in IMG/M
3300031731\|Ga0307405_10718514	Not Available	829	Open in IMG/M
3300031824\|Ga0307413_10704971	Not Available	839	Open in IMG/M
3300031901\|Ga0307406_11147864	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	673	Open in IMG/M
3300031903\|Ga0307407_10089696	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	1881	Open in IMG/M
3300031903\|Ga0307407_10738066	Not Available	745	Open in IMG/M
3300031938\|Ga0308175_100276586	All Organisms → cellular organisms → Bacteria	1699	Open in IMG/M
3300031938\|Ga0308175_100698447	All Organisms → cellular organisms → Bacteria	1101	Open in IMG/M
3300031938\|Ga0308175_101601182	Not Available	728	Open in IMG/M
3300031939\|Ga0308174_10025145	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	3753	Open in IMG/M
3300031939\|Ga0308174_11113731	All Organisms → cellular organisms → Bacteria	672	Open in IMG/M
3300031939\|Ga0308174_11286471	Not Available	625	Open in IMG/M
3300031995\|Ga0307409_102313115	Not Available	567	Open in IMG/M
3300031996\|Ga0308176_10487936	All Organisms → cellular organisms → Bacteria	1248	Open in IMG/M
3300031996\|Ga0308176_11732413	All Organisms → cellular organisms → Bacteria	667	Open in IMG/M
3300032002\|Ga0307416_102118958	All Organisms → cellular organisms → Bacteria	664	Open in IMG/M
3300032002\|Ga0307416_103682487	All Organisms → cellular organisms → Bacteria	513	Open in IMG/M
3300032004\|Ga0307414_11319521	Not Available	670	Open in IMG/M
3300032074\|Ga0308173_10595737	All Organisms → cellular organisms → Bacteria	1001	Open in IMG/M
3300032074\|Ga0308173_11844997	All Organisms → cellular organisms → Bacteria	570	Open in IMG/M
3300032126\|Ga0307415_101050809	Not Available	760	Open in IMG/M
3300033551\|Ga0247830_10955545	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	683	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	51.24%
Host-Associated	Host-Associated	48.76%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	48.76%
Plants	Host-Associated → Plants	48.76%
Aquatic	Environmental → Aquatic	2.48%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	48.76%
Rhizosphere	Host-Associated → Plants → Rhizosphere	36.36%
Rhizoplane	Host-Associated → Plants → Rhizoplane	12.40%
Sediment	Environmental → Aquatic → Sediment	1.65%
Freshwater	Environmental → Aquatic → Freshwater	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	42.15%
Soil	Host-Associated → Plants → Rhizosphere → Soil	19.83%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	16.53%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	9.92%
Loam	Environmental → Terrestrial → Soil → Loam	6.61%
Soil	Host-Associated → Plants → Rhizoplane → Soil	2.48%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.65%
Ice	Environmental → Aquatic → Freshwater → Ice	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	23.14%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	19.83%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	16.53%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	11.57%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	9.92%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	5.79%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.79%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	2.48%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.65%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.65%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	0.83%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.83%

Habitat	Taxonomy	Distribution
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	12.40%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	11.57%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	11.57%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	9.09%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	9.09%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	8.26%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	5.79%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	4.13%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	3.31%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	3.31%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	3.31%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	2.48%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	2.48%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.65%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	1.65%
Polar Desert Sand	Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand	0.83%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.83%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.83%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.83%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.83%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004153	Grasslands soil microbial communities from Hopland, California, USA (version 2)	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005327	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG	Host-Associated	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005333	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG	Host-Associated	Open in IMG/M
3300005335	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG	Host-Associated	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005834	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2	Host-Associated	Open in IMG/M
3300006031	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100	Environmental	Open in IMG/M
3300006876	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200	Environmental	Open in IMG/M
3300006894	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control	Environmental	Open in IMG/M
3300006918	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100	Environmental	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010036	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26	Environmental	Open in IMG/M
3300010037	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25	Environmental	Open in IMG/M
3300010039	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56	Environmental	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300012046	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ833 (21.06)	Environmental	Open in IMG/M
3300012908	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S089-202R-1	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental	Open in IMG/M
3300018465	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 IS	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300018920	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 IS	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300021445	Bulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaG	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025315	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Host-Associated	Open in IMG/M
3300025893	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025909	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026306	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102 (SPAdes)	Environmental	Open in IMG/M
3300027637	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200 (SPAdes)	Environmental	Open in IMG/M
3300027639	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control (SPAdes)	Environmental	Open in IMG/M
3300027886	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028596	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glycerol_Day14	Environmental	Open in IMG/M
3300028768	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_119	Environmental	Open in IMG/M
3300028778	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_142	Environmental	Open in IMG/M
3300028812	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Vanillin_Day48	Environmental	Open in IMG/M
3300030336	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day1	Environmental	Open in IMG/M
3300030496	Bulk soil microbial communities from Mexico - Penjamo (Pe) metaG (v2)	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031731	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1	Host-Associated	Open in IMG/M
3300031824	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2	Host-Associated	Open in IMG/M
3300031901	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2	Host-Associated	Open in IMG/M
3300031903	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1	Host-Associated	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300031939	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R2	Environmental	Open in IMG/M
3300031995	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2	Host-Associated	Open in IMG/M
3300031996	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2	Environmental	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032004	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3	Host-Associated	Open in IMG/M
3300032074	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R1	Environmental	Open in IMG/M
3300032126	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2	Host-Associated	Open in IMG/M
3300033551	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0063455_1005625511	3300004153	Soil	MTPDNGGFAIAAYTVAALVYSGYVVSLKLRERTLRQRLTRLESPARPVSNRPAGA*
Ga0063356_1027863452	3300004463	Arabidopsis Thaliana Rhizosphere	MTPDNGGFATAAYIITAIVFLSYTLSIKLRERRIRERLARLDASARPPSSRAAGA*
Ga0070658_113150322	3300005327	Corn Rhizosphere	MTPDNGGFATAAYLLAALVYGAYVVSLKLRERRLRERLSRLESRATAPNRPAGA*
Ga0070683_1002843262	3300005329	Corn Rhizosphere	MTPDNGGFATAAYLLAALVYGAYVVSLKLRERRLRERLSRLESHATASNRAAGA*
Ga0070683_1021453791	3300005329	Corn Rhizosphere	MTPDNGGFATAAYALAALVYGAYVVSLKLRERRLRERLARLESTARPASNRPAGA*
Ga0070690_1000143092	3300005330	Switchgrass Rhizosphere	MTPDNGGFATAAYVLAALVYGAYVVSLKLRERRLRERLARLESAPRRVSNRPAGA*
Ga0070670_1000882951	3300005331	Switchgrass Rhizosphere	MTPDNGGFATAAYVLAALVYGAYVVSLKLRERRLRERLARLESAPRRASNRPAGA*
Ga0070670_1009968332	3300005331	Switchgrass Rhizosphere	MTPDNGGFATAAYLLAALVYGVYVVSLKLRERRLRERLSRLESHATASNRPAGA*
Ga0070677_102041731	3300005333	Miscanthus Rhizosphere	MTPDNGGFATAAYIITAVVYLSYALSIKLRERRIRERLARLDASARPPSSRPAGA*
Ga0070666_107352122	3300005335	Switchgrass Rhizosphere	MTPDNGAFATAAYVLAALVYGAYVVSLKLRERRLRERLARLESAPRRASNRPAGA*
Ga0070660_1008938531	3300005339	Corn Rhizosphere	TAAYVLAALVYGAYVVSLKLRERRLRERLARLESAPRRASNRPAGA*
Ga0070660_1015652342	3300005339	Corn Rhizosphere	MTPDNAGYVEAAYALAALIYAGYVAVLVARARRLRERLARLETPPRTTRPDGA*
Ga0070691_105764482	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	MTPDNGGFATAAYLLAALVYGVYVVSLKLRECRLRERLSRLESRATAPNRPAGA*
Ga0070668_1011977402	3300005347	Switchgrass Rhizosphere	MTPDNGGFATAAYIITAIVYLSYALSIKLRERRIRARLARLDASARPPSSRATGA*
Ga0070671_1000522545	3300005355	Switchgrass Rhizosphere	MTPDNGGFATAAYVLAALVYGAYVVSLKLRERRLRERLSRLESTARP
Ga0070671_1001071281	3300005355	Switchgrass Rhizosphere	MTPDNGGFATAAYVLAALVYGAYVVSLKLRERRLRERLSRLESTARPASNRPAGA*
Ga0070674_1009336462	3300005356	Miscanthus Rhizosphere	AYIITAVVYLSYALSIKLRERRIRERLARLDASARPPSSRPAGA*
Ga0070673_1003475342	3300005364	Switchgrass Rhizosphere	MTPDNGGFATAAYLLAALVYGVYVVSLKLRERRLRERLSRLESRATAPNRPAGA*
Ga0070659_1007134602	3300005366	Corn Rhizosphere	MTPDNGGFATAAYLLAALVYGVYVVSLKLRERRLRERLARLESAPRRASNRPAGA*
Ga0070678_1010462982	3300005456	Miscanthus Rhizosphere	MTPDNGGFATAAYIITAIVYLSYALSIKLRERRIRERLARLDASARPPSSRPAGA*
Ga0070679_1017716632	3300005530	Corn Rhizosphere	MTPDNGGFATAAYVLAALVYGAYVVSLKLRERRLRERLSRLESHATASNRPAGA*
Ga0070684_1011091051	3300005535	Corn Rhizosphere	YALAALVYGAYVVSLKLRERRLRERLARLESTARPASNRPAGA*
Ga0070664_1000841244	3300005564	Corn Rhizosphere	MTPDNSGYMIAAYALAALVYGAYVLSLKVRERRLRARLSRFESPARPASNRPAGA*
Ga0068852_1001096412	3300005616	Corn Rhizosphere	MTPDNGGYAVAAYTLATIVYVGYILSIKIRERRLRQRLALLESPGLRESHTPEGA*
Ga0068864_1002206973	3300005618	Switchgrass Rhizosphere	MTPDNGGFATAAYVLAALVYGAYVVSLKLRERRLRERLSRLESAPRPASNRPAGA*
Ga0068861_1008611112	3300005719	Switchgrass Rhizosphere	MTPDNGGFAAAAYVLAALVYGAYVVSLKLRERRLRERLARLESAPRRASNRPAGA*
Ga0068851_105279952	3300005834	Corn Rhizosphere	MTPDNGAYMTAAYVLAALVYGAYVVSLKLRERRLRERLSRLDSPMRAASNRPAGA*
Ga0066651_100125153	3300006031	Soil	MTPDNAGFATAAYVLAALVYGAYALSLRVRERRLRERLARLDSPARAASNRPAGA*
Ga0079217_100545602	3300006876	Agricultural Soil	MTPDNAGFATAAYILVAVVYGAYVLSLNLRERRLRARMSRLDAPARTPSNRAAGA*
Ga0079217_113464482	3300006876	Agricultural Soil	MTPDNGGFATAAYIITAIVYLGYAVSIKLRERRIRERLARVDASARPPSSRPVGA*
Ga0079215_100523572	3300006894	Agricultural Soil	MTPDNAGFATAAYILVAVVYGAYVLSLNLRERRLRARMSRLDAPARTPSNRPAGA*
Ga0079216_100593212	3300006918	Agricultural Soil	MTPDNAGFATAAYILVAVVYGAYVLSLNLRERRLRERMSRLEAPARTTSNRPAGA*
Ga0075418_102006272	3300009100	Populus Rhizosphere	MTPDNGGFATAAYIITAIVYLAYALSIKLRERRIREHLARLDASARPPSSRPTGA*
Ga0114129_131353422	3300009147	Populus Rhizosphere	MTPDNGGFATAAYLITAIVYLAYALSIKLRERRIREHLARLDASARPPSSRPTGA*
Ga0111538_104058673	3300009156	Populus Rhizosphere	MTPDNGGFATAAYVLAALVYGAYVVSLKLRERRLRERLSRLESAARPASNRPAGA*
Ga0105248_118940442	3300009177	Switchgrass Rhizosphere	MTPDNGGFATAAYVLAALVYGAYVVSLKLRERRLRERLARLESAPRPASNRPAGA*
Ga0126307_100643105	3300009789	Serpentine Soil	MTPDNGAFATAAYVLAALVYAGYVVSLTLRERRLRQRLARLDSPSRPPSNRSAGA*
Ga0126307_107167581	3300009789	Serpentine Soil	MTPDNSGFATAAYIITAIVYLTYALSIKLRERRIRERLDRLDASAHARSNRPAGA
Ga0126313_103137753	3300009840	Serpentine Soil	MTPDNGAFATAAYVLAALVYAGYVASLKMRERRLRQRLARLDAPSRPSSHRPAGA*
Ga0126305_101688001	3300010036	Serpentine Soil	NGAFATAAYVLAALVYAGYVASLKMRERRLRQRLARLDTPSRPPSHRPAGA*
Ga0126305_104964662	3300010036	Serpentine Soil	MTPDNGAFATAAYVLAALVYAGYVVSLTLRERRLRQRLARLDSPSRPPSNRPAGA*
Ga0126304_104156111	3300010037	Serpentine Soil	MTPDNGAFATAAYVLAALVYAGYVVSLTLRERRLRQRLARLDSPSRAPSNRPAGA*
Ga0126304_104613022	3300010037	Serpentine Soil	LAALVYAGYVVSLTLRERRLRQRLARLDSPSRPPSNRPAGA*
Ga0126309_106323952	3300010039	Serpentine Soil	MTPDNGGFATAAYIIAALVYAGYVVSIKLRERRLRERLARLDTPSRSSSHRPSGA*
Ga0126308_111303932	3300010040	Serpentine Soil	MTPDNAAYATAAYVLAALVYAAYVASLKLRERRLRQRLARLDASLRPTSNRPAGA*
Ga0126312_107082922	3300010041	Serpentine Soil	VTPQNAGFATAAYVLAALVYGGYVVSLKLRERRLRERLSRLDSPARPASNRPAGA*
Ga0126314_113886681	3300010042	Serpentine Soil	VTPDNGGFATAAYVLAALVYTAYVASLKLRERRLRQRLARLYVPPRPTSNRPAGA*
Ga0126311_100440993	3300010045	Serpentine Soil	MTPDNGGFATAAYILIAIVYGGYVLSLTLRERRLRQRLARLDTPSRQPSHRPAGA*
Ga0126311_111169181	3300010045	Serpentine Soil	VTPDNGGFATAAYVLAALVYTAYVASLKLRERRLRQRLARLDAPPRLA
Ga0126306_100219784	3300010166	Serpentine Soil	MTPDNGAFATAAYLLAALVYAGYVASLKLRERRLRQRLARLDAPSRPPSHRPAGA*
Ga0126306_102383551	3300010166	Serpentine Soil	MTPDNGGFATAAYILVAIVYGAYVLSLTLRERRLRERLSRVDAPARTTPNRPAGA*
Ga0136634_100741582	3300012046	Polar Desert Sand	VTPDNGGFATAAYILTAIVYLAYVLSIKVRERRLRERLAHLESAARPASRFPGGT*
Ga0157286_102433272	3300012908	Soil	MTPDNGGFATAAYALAALVYGAYVVSLKLRERRLRERLSRLESTARPASNRPAGA*
Ga0157374_113431831	3300013296	Miscanthus Rhizosphere	MTPYNGGFATSAYVLAALVYGAYVVSLKLRERRLRERLARLESAPRRASNRPAGA*
Ga0163162_106791813	3300013306	Switchgrass Rhizosphere	MTPDNGGFATAAYVLAALVYGAFVVSLKLRERRLRERLSRLESTARPASNRPAGA*
Ga0173483_103557412	3300015077	Soil	MTPDNGGFATAAYIITAIVYLSYALSIKLRERRIRARLARLDASARPPSSRPAGA*
Ga0190269_106112032	3300018465	Soil	MTPDNGGFATAAYILVAIVYGGYVLSLYLRERRLRDRMSRLDARARTTSSRPAGA
Ga0190270_120898441	3300018469	Soil	MTPDNGGFATAAYIITAIVYLAYALSIKLRERRIREHLARLDASARPPSSRPSGA
Ga0190274_102253382	3300018476	Soil	MTPDNGGFATAAYIITAIVYLSYAVSIKVRERRIRERLARLDAPARPPSSRPAGA
Ga0190273_109033712	3300018920	Soil	VTPDNGAFATAAYALAALIYAGYVASLKLRERRLRERLARLDAPPRPASHRPAGA
Ga0190273_116259522	3300018920	Soil	MTPDNGGFATAAYVLVAIVYGAYVLSLSIRERRLRERLARLDAPPRPAPNRPAGA
Ga0173481_103419702	3300019356	Soil	MTPDNGGFATAAYIITAIVYLSYALSIKLRERRIRERLARLDASVRPPSSRPAGA
Ga0182009_100212743	3300021445	Soil	MTPDNGGYMIAAYVLAALVYGAYVVSLKLRERRLRERLSRLETPARGTSSRPAGA
Ga0222622_102531161	3300022756	Groundwater Sediment	MTPDNGGFATAAYLLAALVYGVYVVSLKLRERRLRERLSRLESHATASNRAAGA
Ga0222622_108554832	3300022756	Groundwater Sediment	MTPDNGGFATAAYIITAIVYLGYSLSIKIRERRIREQLARLDASARPPSSRPAGA
Ga0207697_101734492	3300025315	Corn, Switchgrass And Miscanthus Rhizosphere	MTPDNGGFATAAYVLAALVYGAYVVSLKLRERRLRERLARLESAPRRASNRPAGA
Ga0207682_101062383	3300025893	Miscanthus Rhizosphere	MTPDNGGFATAAYIITAVVYLSYALSIKLRERRIRERLARLDASARPPSSRPAGA
Ga0207688_103257712	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	MTPDNGAFATAAYVLAALVYGAYVVSLKLRERRLRERLARLESAPRRASNRPAGA
Ga0207705_102031602	3300025909	Corn Rhizosphere	MTPDNGGFATAAYLLAALVYGAYVVSLKLRERRLRERLSRLESRATAPNRPAGA
Ga0207649_102326731	3300025920	Corn Rhizosphere	MTPDNSGYMIAAYALAALVYGAYVLSLKVRERRLRARLSRFESPARPASNRPAGA
Ga0207649_111976252	3300025920	Corn Rhizosphere	MTPDNGGFATAAYLLAALVYGAYVVSLKLRERRLRERLSRLESHATASNRAAGA
Ga0207649_116749262	3300025920	Corn Rhizosphere	VAAYIITAIVYLSYALSIKLRERRIRERLARLDASARPPSSRPAGA
Ga0207681_107383001	3300025923	Switchgrass Rhizosphere	MTPDNGGFATAAYIITAIVYLSYALSIKLRERRIRARLARLDASARPPSSRATGA
Ga0207650_101774502	3300025925	Switchgrass Rhizosphere	MTPDNGGFATAAYALAALVYGAYVVSLKLRERRLRERLARLESTARPASNRPAGA
Ga0207644_100621274	3300025931	Switchgrass Rhizosphere	MTPDNGGFATAAYVLAALVYGAYVVSLKLRERRLRERLSRLESTARPASNRPAGA
Ga0207690_102125081	3300025932	Corn Rhizosphere	MTPDNGAFTTAAYAIAALVYLGYILSLKLRERRIRARLAQLDAPARATVNRPAGA
Ga0207661_114323601	3300025944	Corn Rhizosphere	RRMTPDNAGFATAAYTLAALVYGAYVVSLKLRERRLRERLARLESPARPASNRPAGA
Ga0207679_115450922	3300025945	Corn Rhizosphere	PDNGGFATAAYLLAALVYGAYVVSLKLRERRLRERLSRLESHATASNRAAGA
Ga0207675_1012360052	3300026118	Switchgrass Rhizosphere	MTPDNGGFAAAAYVLAALVYGAYVVSLKLRERRLRERLARLESAPRRASNRPAGA
Ga0207683_111120152	3300026121	Miscanthus Rhizosphere	MTPDNGGYMTAAYVLAAVVYGAYVVSLKLRERRLRERLSRLESASRQPSNRPAGA
Ga0207683_113105282	3300026121	Miscanthus Rhizosphere	MTPDNGAYMTAAYVLAALVYGAYVVSLKLRERRLRERLSRLESRATAPNRPAGA
Ga0207698_100099086	3300026142	Corn Rhizosphere	MTPDNGGYAVAAYTLATIVYVGYILSIKIRERRLRQRLALLESPGLRESHTPEGA
Ga0207698_120598432	3300026142	Corn Rhizosphere	MTPDNGGFAIAAYVLAALVYGAYVVSLKLRERRLRERLSRLESRATAPNRPAGA
Ga0209468_11232442	3300026306	Soil	MTPDNAGFATAAYVLAALVYGAYALSLRVRERRLRERLARLDSPARAASNRPAGA
Ga0209818_10264242	3300027637	Agricultural Soil	MTPDNAGFATAAYILVAVVYGAYVLSLNLRERRLRARMSRLDAPARTPSNRAAGA
Ga0209387_10711252	3300027639	Agricultural Soil	MTPDNAGFATAAYILVAVVYGAYVLSLNLRERRLRARMSRLDAPARTPSNRPAGA
Ga0209486_110853282	3300027886	Agricultural Soil	MTPDNGGFATAAYIITAIVYLGYAVSIKLRERRIRERLARVDASARPPSSRPAGA
Ga0209382_111886652	3300027909	Populus Rhizosphere	MTPDNGGFATAAYIITAIVYLAYALSIKLRERRIREHLARLDASARPPSSRPTGA
Ga0268264_108611761	3300028381	Switchgrass Rhizosphere	MTPDNGGFATAAYVLAALVYGAYVVSLKLRERRLRERLSRLESTARPASNRP
Ga0247821_109247172	3300028596	Soil	MTPDNGGFATAAYIITAIVYLAYALSIKLRERRIREHLARLDASARPPSNRPTGA
Ga0307280_103470622	3300028768	Soil	MTPDNGGFAIAAYTVAALVYGGYVVSLKLRERKLRERLTRLDSPARSASNRPAGA
Ga0307288_100397173	3300028778	Soil	MTPDNGGFATAAYLLAALVYGVYVVSLKLRERRLRERLSRLESRATAPNRPAGA
Ga0247825_110893042	3300028812	Soil	MTPDNGVFATAAYIITAIVYLAYAASIKLRERRIRERLARLDASARPTSSRSVGA
Ga0247826_116336252	3300030336	Soil	MTPDNGGYMTAAYALAALVYLGYVLNLKLRERRLRARLAQLDAPARPAPNRPAGA
Ga0268240_100058462	3300030496	Soil	MTPDNGGYMMAAYVLAAVVYGAYVVSLKLRERRLRERLSRLESPARAPSNRPAGA
Ga0307408_1001011993	3300031548	Rhizosphere	MTPDNGGFATAAYILVAIVYGGYVLSLKLRERQLRDRLSRLDASSRPTSSRPAGA
Ga0307408_1024240482	3300031548	Rhizosphere	MTPDNGGFATAAYLLVAMVYGGYVLSLKLRERQLRERLSRLDASSRPPSSRPAGA
Ga0310813_104717232	3300031716	Soil	MTPDNAGYMEAAYALAALIYAGYVAVLVARARRLRERLARLETPPRTTRPDGA
Ga0307405_100578472	3300031731	Rhizosphere	MTPDNGGFATAAYLLVAIVYGGYVLSLKLRERQLRERLSRLDASSRPTSSRPAGA
Ga0307405_102513302	3300031731	Rhizosphere	MTPDNGGFATAAYIITAIVYLSYALSIKLRERRIREHLARLDASARPPSNRPAGA
Ga0307405_107185142	3300031731	Rhizosphere	MTPDNGAFATAAYALVAIVYGAYVVNLKLRERRLRARLARLDAPARPTSNRPSGA
Ga0307413_107049711	3300031824	Rhizosphere	AVVYGAYVLSLAARERRLRERLARLDAPARPTSNRPAGA
Ga0307406_111478641	3300031901	Rhizosphere	MTPDNASYMTAAYVLAALVYGAYIISLELRARRLRERLARLESPSRAAPNRPAGA
Ga0307407_100896961	3300031903	Rhizosphere	MTPDNGGFATAAYILVAIVYGGYVLSLKLRERQLRDRLSRLDASSRPTSSRPA
Ga0307407_107380661	3300031903	Rhizosphere	MTPDNAGFATAAYTVAAIVYLAYVLSIKVRERRLRDRLARLDSRTRPASNRPAGA
Ga0308175_1002765862	3300031938	Soil	MTPDNAGFATAAYILAALVYGAYVVSLKVRERRLRERLAHLESPARTASNRPAGA
Ga0308175_1006984472	3300031938	Soil	MTPDNGGYMIAAYVLAALVYGAYVVSLKVRERRLRARLSRFESPARPASNRPAGA
Ga0308175_1016011822	3300031938	Soil	MTPDNAGFATAAYTLAALVYGAYIVSLKLRERRLRQRLARLESPARPATNRPAGA
Ga0308174_100251452	3300031939	Soil	MTPDNAGFATAAYTLAALVYGAYIVSLKVRERRLRERLARLESPARPASNRPAGA
Ga0308174_111137312	3300031939	Soil	MIPNNGGYATAAYTLAALVYLGYILSIKLRERRLRERLSQLQSPARPVSHTPEGA
Ga0308174_112864712	3300031939	Soil	MIPDNGGYAAAAYVLASLVYLGYILSIKIRERRLRQRLALLESPGSRESHTPDGA
Ga0307409_1023131151	3300031995	Rhizosphere	MTPDNQGFATAAYVLAALVYLGYVVTIKVRERRLRQRLAQLESAGRPASRPAGA
Ga0308176_104879362	3300031996	Soil	MTPDNAGFATAAYTLAALVYGAYIVSLKLRERRLRERLARLESPARPATNRPAGA
Ga0308176_117324132	3300031996	Soil	MTPDNGGYAAAAYTLAALVYLGYILSIKLRERRLRERLAQLQSPARPVSHSPEGA
Ga0307416_1021189582	3300032002	Rhizosphere	MTPDNGGFATAAYLLVAIVYGGYVLSLKLRERQLRERLSRLDASSRPPSSRPAGA
Ga0307416_1036824872	3300032002	Rhizosphere	MTPDNQGFATAAYVLAALVYLGYIVTIKVRERRLRQRLAELESAGRPASRPAGA
Ga0307414_113195211	3300032004	Rhizosphere	MTPDNGGFATAAYILVAIVYGGYVLSLTLRERQLRERLSRLDASSRPTPSRPAGA
Ga0308173_105957372	3300032074	Soil	MTPDNGGYAAAAYTLAALVYLGYILSLKLRERRLRERIAQIESPARPASNTPEGA
Ga0308173_118449971	3300032074	Soil	MIPDNGGYATAAYVLASLVYLGYILSIKIRERRLRQRLALLESPGSRESHTPD
Ga0307415_1010508092	3300032126	Rhizosphere	MTPDNQGFATAAYVLAALVYVGYIVTIKVRERRLRQRLAQLESAGRPASRPAGA
Ga0247830_109555452	3300033551	Soil	MTPDNGAFATAAYALVAIVYGAYVVNLKLRERRLRARLARLDAPARPSSNRPSGA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F072040

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences