NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F071622

Metagenome / Metatranscriptome Family F071622

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F071622
Family Type Metagenome / Metatranscriptome
Number of Sequences 122
Average Sequence Length 82 residues
Representative Sequence MKDGKPNNAGDPEVRRTASAGRKGGGPKKQRGFVERATAMGHSGYGAESVRPHLRDQLRLKSLLPQPFPTPEAEAGKDEHHR
Number of Associated Samples 67
Number of Associated Scaffolds 122

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 86.89 %
% of genes near scaffold ends (potentially truncated) 18.03 %
% of genes from short scaffolds (< 2000 bps) 91.80 %
Associated GOLD sequencing projects 64
AlphaFold2 3D model prediction Yes
3D model pTM-score0.30

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (100.000 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil
(18.033 % of family members)
Environment Ontology (ENVO) Unclassified
(36.066 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(53.279 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 17.27%    β-sheet: 0.00%    Coil/Unstructured: 82.73%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.30
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 122 Family Scaffolds
PF12778PXPV 31.97
PF04397LytTR 6.56
PF00749tRNA-synt_1c 4.10
PF03950tRNA-synt_1c_C 1.64
PF01656CbiA 0.82
PF14026DUF4242 0.82
PF02776TPP_enzyme_N 0.82
PF132392TM 0.82
PF02518HATPase_c 0.82

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 122 Family Scaffolds
COG0008Glutamyl- or glutaminyl-tRNA synthetaseTranslation, ribosomal structure and biogenesis [J] 5.74

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms100.00 %
UnclassifiedrootN/A0.00 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2170459020|G1P06HT01BZB0WAll Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter → unclassified Ramlibacter → Ramlibacter sp. H242597Open in IMG/M
3300000033|ICChiseqgaiiDRAFT_c0470641All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae710Open in IMG/M
3300000956|JGI10216J12902_100707698All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter → unclassified Ramlibacter → Ramlibacter sp. H242992Open in IMG/M
3300003322|rootL2_10037360All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales1526Open in IMG/M
3300003323|rootH1_10158003All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales1319Open in IMG/M
3300003792|Ga0055540_1016599All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae2088Open in IMG/M
3300004114|Ga0062593_101334704All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae762Open in IMG/M
3300004463|Ga0063356_101879691All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae902Open in IMG/M
3300004463|Ga0063356_102390765All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae808Open in IMG/M
3300005184|Ga0066671_10626614All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae698Open in IMG/M
3300005186|Ga0066676_11061842All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → unclassified Comamonadaceae → Comamonadaceae bacterium URHA0028536Open in IMG/M
3300005327|Ga0070658_10395600All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae1186Open in IMG/M
3300005327|Ga0070658_10492191All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae1059Open in IMG/M
3300005356|Ga0070674_100849460All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter → unclassified Ramlibacter → Ramlibacter sp. H242792Open in IMG/M
3300005456|Ga0070678_100579943All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae999Open in IMG/M
3300005459|Ga0068867_102130946All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → unclassified Comamonadaceae → Comamonadaceae bacterium URHA0028531Open in IMG/M
3300005511|Ga0077121_10204792All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales1577Open in IMG/M
3300005515|Ga0077122_10025303All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → unclassified Comamonadaceae → Comamonadaceae bacterium URHA00287454Open in IMG/M
3300005844|Ga0068862_100237186All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae1657Open in IMG/M
3300006038|Ga0075365_10443623All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae916Open in IMG/M
3300006169|Ga0082029_1280761All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae880Open in IMG/M
3300006169|Ga0082029_1759594All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae2043Open in IMG/M
3300006237|Ga0097621_101886428All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → unclassified Comamonadaceae → Comamonadaceae bacterium URHA0028570Open in IMG/M
3300006353|Ga0075370_10206432All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae1160Open in IMG/M
3300006846|Ga0075430_100092857All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae2523Open in IMG/M
3300006853|Ga0075420_100052081All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Hylemonella → Hylemonella gracilis3643Open in IMG/M
3300009100|Ga0075418_10915689All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter → unclassified Ramlibacter → Ramlibacter sp. H242948Open in IMG/M
3300009553|Ga0105249_11985315All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter → unclassified Ramlibacter → Ramlibacter sp. H242654Open in IMG/M
3300009789|Ga0126307_10646401All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae854Open in IMG/M
3300010154|Ga0127503_10805972All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae869Open in IMG/M
3300010154|Ga0127503_11090253All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae515Open in IMG/M
3300011332|Ga0126317_10103725All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae1009Open in IMG/M
3300012212|Ga0150985_100260429All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae595Open in IMG/M
3300012212|Ga0150985_101124911All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter → unclassified Ramlibacter → Ramlibacter sp. H2421330Open in IMG/M
3300012212|Ga0150985_101748397All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae649Open in IMG/M
3300012212|Ga0150985_101943951All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter → Ramlibacter ginsenosidimutans969Open in IMG/M
3300012212|Ga0150985_103649649All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae930Open in IMG/M
3300012212|Ga0150985_105744383All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae1057Open in IMG/M
3300012212|Ga0150985_105919264All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae809Open in IMG/M
3300012212|Ga0150985_108522467All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae949Open in IMG/M
3300012212|Ga0150985_108672220All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae798Open in IMG/M
3300012212|Ga0150985_112832563All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae584Open in IMG/M
3300012212|Ga0150985_114314520All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter → unclassified Ramlibacter → Ramlibacter sp. H242536Open in IMG/M
3300012212|Ga0150985_117577283All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae855Open in IMG/M
3300012212|Ga0150985_118018413All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae532Open in IMG/M
3300012212|Ga0150985_121653276All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae651Open in IMG/M
3300012212|Ga0150985_121655190All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter → unclassified Ramlibacter → Ramlibacter sp. H242647Open in IMG/M
3300012212|Ga0150985_122623892All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae842Open in IMG/M
3300012389|Ga0134040_1240489All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter → Ramlibacter ginsenosidimutans727Open in IMG/M
3300012390|Ga0134054_1204856All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter → Ramlibacter ginsenosidimutans724Open in IMG/M
3300012399|Ga0134061_1032550All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae504Open in IMG/M
3300012469|Ga0150984_100339142All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae674Open in IMG/M
3300012469|Ga0150984_100886882All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae519Open in IMG/M
3300012469|Ga0150984_104165513All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae2710Open in IMG/M
3300012469|Ga0150984_109121265All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter1055Open in IMG/M
3300012469|Ga0150984_110340483All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae583Open in IMG/M
3300012469|Ga0150984_112255325All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae1803Open in IMG/M
3300012469|Ga0150984_114327181All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter858Open in IMG/M
3300012469|Ga0150984_114475422All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae636Open in IMG/M
3300012469|Ga0150984_116335029All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae713Open in IMG/M
3300012469|Ga0150984_118222308All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter → unclassified Ramlibacter → Ramlibacter sp. H242695Open in IMG/M
3300012469|Ga0150984_120276001All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter → Ramlibacter ginsenosidimutans1100Open in IMG/M
3300012469|Ga0150984_120643423All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae526Open in IMG/M
3300012469|Ga0150984_121586013All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae721Open in IMG/M
3300012469|Ga0150984_122927598All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae594Open in IMG/M
3300012977|Ga0134087_10338058All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae716Open in IMG/M
3300012977|Ga0134087_10548449All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae590Open in IMG/M
3300012984|Ga0164309_10972984All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter → unclassified Ramlibacter → Ramlibacter sp. H242697Open in IMG/M
3300012987|Ga0164307_10893399All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae714Open in IMG/M
3300014326|Ga0157380_10651222All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter → unclassified Ramlibacter → Ramlibacter sp. H2421051Open in IMG/M
3300018465|Ga0190269_10100563All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales1416Open in IMG/M
3300018465|Ga0190269_10200811All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter1080Open in IMG/M
3300018465|Ga0190269_10548517All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae766Open in IMG/M
3300018465|Ga0190269_10953161All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae641Open in IMG/M
3300018465|Ga0190269_11153206All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae604Open in IMG/M
3300018465|Ga0190269_11470775All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae558Open in IMG/M
3300018476|Ga0190274_10448644All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae1270Open in IMG/M
3300018476|Ga0190274_12659329All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae597Open in IMG/M
3300018476|Ga0190274_12920425All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae573Open in IMG/M
3300025273|Ga0209673_1009097All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae4338Open in IMG/M
3300025273|Ga0209673_1034635All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales1522Open in IMG/M
3300025893|Ga0207682_10293694All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae761Open in IMG/M
3300025909|Ga0207705_10389937All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae1076Open in IMG/M
3300025945|Ga0207679_11792156All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae561Open in IMG/M
3300026089|Ga0207648_11695766All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae593Open in IMG/M
3300026312|Ga0209153_1090636All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae1138Open in IMG/M
3300027909|Ga0209382_12308241All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter → unclassified Ramlibacter → Ramlibacter sp. H242505Open in IMG/M
3300028592|Ga0247822_11733867All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae532Open in IMG/M
3300028597|Ga0247820_10030722All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae3072Open in IMG/M
3300028597|Ga0247820_10382000All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter939Open in IMG/M
3300028597|Ga0247820_10753412All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae682Open in IMG/M
3300028608|Ga0247819_10984023All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae533Open in IMG/M
3300030511|Ga0268241_10074400All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae759Open in IMG/M
3300031548|Ga0307408_100732946All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae891Open in IMG/M
3300031548|Ga0307408_101122880All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae730Open in IMG/M
(restricted) 3300031825|Ga0255338_1002681All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae24531Open in IMG/M
3300031847|Ga0310907_10346752All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae760Open in IMG/M
3300031852|Ga0307410_10242280All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae1398Open in IMG/M
3300031938|Ga0308175_100244862All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter → Ramlibacter tataouinensis1796Open in IMG/M
3300031938|Ga0308175_101029816All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter911Open in IMG/M
3300031938|Ga0308175_102782240All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae547Open in IMG/M
3300031939|Ga0308174_10287054All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae1292Open in IMG/M
3300031939|Ga0308174_11197641All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae648Open in IMG/M
3300031943|Ga0310885_10720957All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae562Open in IMG/M
3300031995|Ga0307409_102505518All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae545Open in IMG/M
3300031996|Ga0308176_10240330All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae1730Open in IMG/M
3300031996|Ga0308176_10976871All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae892Open in IMG/M
3300031996|Ga0308176_11776762All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae658Open in IMG/M
3300032002|Ga0307416_102522046All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae613Open in IMG/M
3300032002|Ga0307416_103234951All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter → unclassified Ramlibacter → Ramlibacter sp. H242545Open in IMG/M
3300032005|Ga0307411_11397268All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter → unclassified Ramlibacter → Ramlibacter sp. H242640Open in IMG/M
3300032013|Ga0310906_11064850All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae584Open in IMG/M
3300032074|Ga0308173_10094655All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae2308Open in IMG/M
3300032074|Ga0308173_10265072All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae1462Open in IMG/M
3300032074|Ga0308173_10591317All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae1004Open in IMG/M
3300032074|Ga0308173_11456442All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae643Open in IMG/M
3300032074|Ga0308173_11568173All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae619Open in IMG/M
3300032157|Ga0315912_10277618All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae1319Open in IMG/M
3300032157|Ga0315912_10953443All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae682Open in IMG/M
3300033550|Ga0247829_10270973All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae1371Open in IMG/M
3300034268|Ga0372943_1187905All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae510Open in IMG/M
3300034384|Ga0372946_0410494All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae658Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil18.03%
Avena Fatua RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere13.11%
Avena Fatua RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere11.48%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil10.66%
RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere5.74%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil4.10%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil4.10%
Arabidopsis RootHost-Associated → Plants → Roots → Endophytes → Unclassified → Arabidopsis Root3.28%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere3.28%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere3.28%
SoilEnvironmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil2.46%
Termite NestEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Termite Nest1.64%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil1.64%
Arabidopsis Thaliana RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere1.64%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere1.64%
Populus EndosphereHost-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere1.64%
Sugarcane Root And Bulk SoilHost-Associated → Plants → Rhizome → Unclassified → Unclassified → Sugarcane Root And Bulk Soil1.64%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere1.64%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil0.82%
Serpentine SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil0.82%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil0.82%
Sandy SoilEnvironmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil0.82%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere0.82%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere0.82%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere0.82%
Miscanthus RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere0.82%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.82%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.82%
Switchgrass, Maize And Mischanthus LitterEngineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter0.82%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
2170459020Litter degradation NP2EngineeredOpen in IMG/M
3300000033Soil microbial communities from Great Prairies - Iowa, Continuous Corn soilEnvironmentalOpen in IMG/M
3300000956Soil microbial communities from Great Prairies - Kansas, Native Prairie soilEnvironmentalOpen in IMG/M
3300003322Sugarcane root Sample L2Host-AssociatedOpen in IMG/M
3300003323Sugarcane root Sample H1Host-AssociatedOpen in IMG/M
3300003792Arabidopsis rhizosphere microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2Host-AssociatedOpen in IMG/M
3300004114Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5EnvironmentalOpen in IMG/M
3300004463Combined assembly of Arabidopsis thaliana microbial communitiesHost-AssociatedOpen in IMG/M
3300005184Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120EnvironmentalOpen in IMG/M
3300005186Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125EnvironmentalOpen in IMG/M
3300005327Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaGHost-AssociatedOpen in IMG/M
3300005356Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaGHost-AssociatedOpen in IMG/M
3300005456Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaGHost-AssociatedOpen in IMG/M
3300005459Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2Host-AssociatedOpen in IMG/M
3300005511Combined assembly of arab plate scrape MF_Col (Combined Assembly)Host-AssociatedOpen in IMG/M
3300005515Combined assembly of arab plate scrape MF_Cvi (Combined Assembly)Host-AssociatedOpen in IMG/M
3300005844Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2Host-AssociatedOpen in IMG/M
3300006038Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5Host-AssociatedOpen in IMG/M
3300006169Termite nest microbial communities from Madurai, IndiaEnvironmentalOpen in IMG/M
3300006237Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)Host-AssociatedOpen in IMG/M
3300006353Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5Host-AssociatedOpen in IMG/M
3300006846Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4Host-AssociatedOpen in IMG/M
3300006853Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4Host-AssociatedOpen in IMG/M
3300009100Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2Host-AssociatedOpen in IMG/M
3300009553Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaGHost-AssociatedOpen in IMG/M
3300009789Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28EnvironmentalOpen in IMG/M
3300010154Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300011332Soil microbial communities from California, USA to study soil gas exchange rates - SR-CA-SC2 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012212Combined assembly of Hopland grassland soilHost-AssociatedOpen in IMG/M
3300012389Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_5_16_2 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012390Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_8_1 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012399Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_24_2 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012469Combined assembly of Soil carbon rhizosphereHost-AssociatedOpen in IMG/M
3300012977Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300012984Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MGEnvironmentalOpen in IMG/M
3300012987Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MGEnvironmentalOpen in IMG/M
3300014326Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaGHost-AssociatedOpen in IMG/M
3300018465Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 ISEnvironmentalOpen in IMG/M
3300018476Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 TEnvironmentalOpen in IMG/M
3300025273Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025893Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025909Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025945Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026089Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026312Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120 (SPAdes)EnvironmentalOpen in IMG/M
3300027909Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)Host-AssociatedOpen in IMG/M
3300028592Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Cellulose_Day30EnvironmentalOpen in IMG/M
3300028597Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day14EnvironmentalOpen in IMG/M
3300028608Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Xylose_Day6EnvironmentalOpen in IMG/M
3300030511Bulk soil microbial communities from Mexico - Amatitan (Am) metaG (v2)EnvironmentalOpen in IMG/M
3300031548Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3Host-AssociatedOpen in IMG/M
3300031825 (restricted)Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - MeOH1_35cm_T4_195EnvironmentalOpen in IMG/M
3300031847Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D4EnvironmentalOpen in IMG/M
3300031852Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3Host-AssociatedOpen in IMG/M
3300031938Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1EnvironmentalOpen in IMG/M
3300031939Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R2EnvironmentalOpen in IMG/M
3300031943Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D2EnvironmentalOpen in IMG/M
3300031995Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2Host-AssociatedOpen in IMG/M
3300031996Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2EnvironmentalOpen in IMG/M
3300032002Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3Host-AssociatedOpen in IMG/M
3300032005Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1Host-AssociatedOpen in IMG/M
3300032013Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3EnvironmentalOpen in IMG/M
3300032074Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R1EnvironmentalOpen in IMG/M
3300032157Garden soil microbial communities collected in Santa Monica, California, United States - V. faba soilEnvironmentalOpen in IMG/M
3300033550Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4EnvironmentalOpen in IMG/M
3300034268Forest soil microbial communities from Eldorado National Forest, California, USA - SNFC_MG_FRD_1.2EnvironmentalOpen in IMG/M
3300034384Forest soil microbial communities from Eldorado National Forest, California, USA - SNFC_MG_KNG_2.2EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
2NP_039629702170459020Switchgrass, Maize And Mischanthus LitterMKDGKSENSGDPDRRRPVVTGRRGGGTEKQRGFVERATARGHSGHGADSVRPHLRDQLQLKALLPTPFPMPEQENGTDR
ICChiseqgaiiDRAFT_047064123300000033SoilMKDGKPIYASEPPDGRRPAAGGRRGNGPGRQRGFVERATAKGHSGHGAESVRPHLRDQLRLKALLAVPFSPPGGWLARTNSK*
JGI10216J12902_10070769813300000956SoilMKDGKPDNAGEPEDRRSPGAGRRGSGPKQRGGSFVERATARGHSGHGAESVRPHLRDQLRLKALLPTPYPTPEQENGKDEHHR*
rootL2_1003736033300003322Sugarcane Root And Bulk SoilMKDGKPNNAGDPEVRRTASAGRKGGGPKKQRGFVERATAMGHSGYGAESVRPHLRDQLRLKSLLPQPFPTPEAEAGKDEHHR*
rootH1_1015800313300003323Sugarcane Root And Bulk SoilMKDGKPNNAGEPDNRRAAPGKRKGVAAKRQRGFVERATAVGHSGHGADSVRPHLRDQLRLKSLLPQPFPTPEQDAPKEEHPGN*
Ga0055540_101659933300003792Arabidopsis RootMKDGKPNYAGEPEGRRPASAGRKGSGGGTMRQRSFVERATATGHSGHGSESVRPHLRDQLRLKSLLPQPYPTPEPESPKDDSHR*
Ga0062593_10133470423300004114SoilMKDGKPEHSGDPDRRRPVAPGRRGGGTGKQRGFVERATARGHSGHGADSVRPHLRDQLQLKALLPTPFPTPEQENGTDR*
Ga0063356_10187969123300004463Arabidopsis Thaliana RhizosphereMKDGKPSDTGPPEPRRTASAGRKGGGPRKQRGFVERATAAQGHSGHGADSVRPHLRDQLRLKSLLPQPFPTPEQQRETWKDDHHR*
Ga0063356_10239076523300004463Arabidopsis Thaliana RhizosphereMKDGKPSDTGPPEPRRTASAGRRGGGPARQRGFIERATAAQGHSGHGAESVRPHLRDQLRLKSLLPQPFPMPEQQKDRWKDDHHR*
Ga0066671_1062661413300005184SoilMKDGKPNYASEPESRRASAGRKGPGMGRQRGFVERATAMGHSGHGAESVRPHLRDQLKLKSLLPQPYPTPEQENTKDENRR*
Ga0066676_1106184213300005186SoilMKDGKPNYASEPDPRRSASAGRKGGRPGKQRGFVERATAMGHSGHGAESVRPHLRDQLKLKSLL
Ga0070658_1039560013300005327Corn RhizosphereMKDGKPNSAGEPDTRRAASGKRKGVGAGRQRGFVERATAMGHSGHGADSVRPHLRDQLRLKSLLPQPYPTPEQESPKDELHRG*
Ga0070658_1049219123300005327Corn RhizosphereMKDGKPTDARDPDGRRLGTGGRRGSGAGRQRGFVERATAHGHSGYGADSVRPHLRDQLKLKALLPQPYPTPEQQPEPSKDDHHR*
Ga0070674_10084946013300005356Miscanthus RhizosphereMKDARPNSTGDPERRRPGSPGRKNGGRRGYIERATASGYSGYGSESVRPHLRDQLQLKSLLPQPFPTPEQDGAKDEHHR*
Ga0070678_10057994313300005456Miscanthus RhizosphereMKDGKPNYAREPEGRRAASAGRKPAGAIGRQRGFVERATAMGHSGHGAESVRPHLRDQLRLKSLLPQPFPTPESESPKDDHHRR*
Ga0068867_10213094613300005459Miscanthus RhizosphereMKDGKPNYAREPEGRRAASAGRKPVGAVGRQRGFVERATAMGHSGHGAESVRPHLRDQLRLKSLLPQPFPTPESESPKDDHHRR*
Ga0077121_1020479233300005511Arabidopsis RhizosphereMKDGKPSNAGEPQGWRPASAGRKGGPARQRGFVERATASGHSGHGSESVRPHLRDQLRLKSLLPQPYPTPEPEGPKDDQAY*
Ga0077122_1002530323300005515Arabidopsis RootMKDGRPNSTGDPERWRPGSAGRKGGGPKKQRGFVERATATGHSGYGSESVRPHLRDQLQLKALLPQPFPTPEQDNRKDEHHR*
Ga0068862_10023718623300005844Switchgrass RhizosphereMKDMKPSNAGDPEGRRSQGGRRGSGPARQKGFVERATAQGHSGHGAESVRPHLRDQLRLKALLPMPYPTPEAQPSNDSQDR*
Ga0075365_1044362313300006038Populus EndosphereMKDGRPNSTGDPDRWRPGSAGRKGGGPKKQRGFVERATASGHSGYGSESVRPHLRDQLKLKALLPQPFPTPDQDSPKDEHHR*
Ga0082029_128076123300006169Termite NestMKDGKPNNAGEPEGRRASSGRRSGGPSRQRGFVERATATGHSGHGSESVRPHLRDQLKLKSLLPQPFPMPDVAAIDSPKDEQHR*
Ga0082029_175959433300006169Termite NestMKDGKPNNASPPEGRKPAAGPGRRGSGPIKQRGFVERATAQGHSGHGSESVRPHLRDQLRLKALLPSPFPVPGEQQPAKDEQHR*
Ga0097621_10188642813300006237Miscanthus RhizosphereMKDGRPNSTGDPDRRRPGSAGRKVGGPARRGFVERATATGHSGYGSESVRPHLRDQLKLKALLPQPFPTPEQDIVKDRHHR*
Ga0075370_1020643213300006353Populus EndosphereMKDGRPNSTGDPERWRPGSAGRKGGGPKKQRGFVERATASGHSGYGSESVRPHLRDQLKLKALLPQPFPTLDQDSPKDEHHR*
Ga0075430_10009285733300006846Populus RhizosphereMKDGKPDNAGDPEGRRPAGAGRRGSGPVKQRGGGFVERATARGHSGHGAESVRPHLRDQLRLKALLPTPYPTPEQENGKDEHHR*
Ga0075420_10005208153300006853Populus RhizosphereMKDGKPDIAGDSEGRRPAGAGRRGGGPVKQRGGGFVERATARGHSGHGAESVRPHLRDQLRLKALLPTPYPTPEQENGKDEHHR*
Ga0075418_1091568923300009100Populus RhizosphereMKDGKPDIAGDSEGRRPAGAGRRGGGPVKQRGGGFVERATARGHSGHGAESVRPHLRDQLRLKALLPTPYPTPEQDNGKDEHHR*
Ga0105249_1198531513300009553Switchgrass RhizosphereMKDMKPSNAGDPEGRRSQGGRRGSGPARQKGFVERATAQGHSGHGAESVRPHLRDQLRLKALLPTPYPTPEAQPSNDSQDR*
Ga0126307_1064640113300009789Serpentine SoilMKDGKPNNAGDPDRRRPASSGRRGSGPAKQRGFVERATARGHSGHGADSVRPHLRDQLKLKALLPTPFPTPEQENGADR*
Ga0127503_1080597223300010154SoilMKDGKPNYYAGPVSAVRKAGRQRGFVERATAVGHSGHGAESVRPHLRDQLKLKSLLPQPFPTPDVESPKDDHHRR*
Ga0127503_1109025313300010154SoilVRPNSTGDPDRRRPGSVGRKAGGPARRGFVERATATGHSGYGSESVRPHLSDQLQLKALLPQPFPTPEQDIIKDRHHR*
Ga0126317_1010372513300011332SoilMKDGKPNYAREPEGRRAAPAGRKAAGAGGRQRGFVERATAMGHSGHGAESVRPHLRDQLRLKSLLPQPFPTPESESPKDDHHRR*
Ga0150985_10026042913300012212Avena Fatua RhizosphereMKDGKPNSTGDPDRRRPGFAGRKGGGPKKQRGFVERATASGHSGYGSESVRPHLRDQLKLKALLPQPFPTPDQESPKDGHHR*
Ga0150985_10112491123300012212Avena Fatua RhizosphereMRDGKPTIAGDPDGLRPGGRRGSGPAKQRGFVERATARGHSGHGAESVRPHLRDQLRLKALLPTPFPTPEQQTPKDEHHR*
Ga0150985_10174839713300012212Avena Fatua RhizosphereMKDGKPSNEGDLDGRRAGSGGRRASGLGRQRGFVERATARGHSGHGAESVRPHLRDQLKLKALLPTPYPTPEQQREPGKDDHHR*
Ga0150985_10194395123300012212Avena Fatua RhizosphereMKDGKPNNVGEPDSRWPASAGRKGSRPGRQRGFVERATATGHSGHGAESVRPHLRDQLKLKSLLPQPYPTPEQDKSRRN*
Ga0150985_10364964923300012212Avena Fatua RhizosphereMRDAKPTSPGGEPDNRRAAGGRRGSGPKKQRDFVERATARGHSGHGAESVRPHLRDQLRLKALLPTPFPTPEQDQPGKDEHHH*
Ga0150985_10574438313300012212Avena Fatua RhizosphereMKDGKPNYAREPEGRRAAPAGRKAVGAGGRQRGFVERATAMGHSGHGAESVRPHLRDQLRLKSLLPQPFPTPESESPKDDHHRR*
Ga0150985_10591926423300012212Avena Fatua RhizosphereMKDGKPNYAGEPDNTRRMASAGRKAGGPGRQRGFVERATAQGHSGHGAESVRPHLRDQLRLKSLLPQPYPTPEQEHASKEDHHR*
Ga0150985_10852246713300012212Avena Fatua RhizosphereMKDGKPNYAGEPDNLRRSASAGRKGGGPARQRGFVERAMAAQGHSGHGAESVRPHLRDQLRLKSLLPQPYPTPEQDNANKEDHHR*
Ga0150985_10867222023300012212Avena Fatua RhizosphereGKPNYAAEPDSAGYRRTASSGRKGGGPARQRGFVERATAQGHSGHGADSVRPHLRDQLRLKSLLPQPYPTPEQENAKDEYHR*
Ga0150985_11283256313300012212Avena Fatua RhizosphereMRDGKPSNTGDPESRRPIGGRRGGPAKQRGFVERATARGHSGHGAESVRPHLRDQLRLKALLPTPFPTPDTAGSKDEHHL*
Ga0150985_11431452013300012212Avena Fatua RhizosphereMKDGKPMNTRDAEGRGPPLARRGSGPKKQRGFVERATARGHSGHGSESVRPHLRDQLRLKALLPTPFPTPDSQGSKDEHHL*
Ga0150985_11757728313300012212Avena Fatua RhizosphereMKDGKPINPGEPDARRPGAIGGRRGSGPAKQRGFVERATARGHSGHGAESVRPHLRDQLRLKALLPTPYPTPEQQSDTGKDDHHR*
Ga0150985_11801841313300012212Avena Fatua RhizosphereMKDGKPSNAGDPGGRHAASGRRGGGAKKQRGFVERATAMGHSGHGSESVRPHLRDQLKLKSLLPQPFPTPEQENGKDEVHR*
Ga0150985_12165327613300012212Avena Fatua RhizosphereMKDGKPNNVSEPESRRASAGRKGPGMGRQRGFVERATAMGHSGHGAESVRPHLRDQLKLKSLLPQPYPTPEQENAKDENRR*
Ga0150985_12165519013300012212Avena Fatua RhizosphereMKDGKPNYASEPEGRRASAGRKGPGMGRQRGFVERATAMGHSGHGAESVRPHLRDQLKLKSLLPQPYPTPEQENAKDEHHR*
Ga0150985_12262389213300012212Avena Fatua RhizosphereRHVKRFTGHTLLTLRVKTAMKDGKPTQPGDPDIRRAGGGRRGSGPARQRGFVERATAKGHSGHGAESVRPHLRDQLRLKSLLPTPYPTPEQQSQPSKDDHHR*
Ga0134040_124048923300012389Grasslands SoilGKPNYASEPDPRRSASAGRKGGRPGKQRGFVERATAMGHSGHGAESVRPHLRDQLKLKSLLPQPYPTPEQETQKDG*
Ga0134054_120485613300012390Grasslands SoilKPNYASEPDPRRSASAGRKGGRPGKQRGFVERATAMGHSGHGSESVRPHLRDQLKLKSLLPQPYPTPEQETQKDG*
Ga0134061_103255013300012399Grasslands SoilMKDGKPNYASEPDPRRSASAGRKGGRPGKQRGFVERATAMGHSGHGAESVRPHLRDQLKLKSLLPQPYPTPEQETQKD
Ga0150984_10033914223300012469Avena Fatua RhizosphereMKDGKPNYAGEPDNTRRMASAGRKAGRQRGFVERATAQGHSGHGAESVRPHLRDQLRLKSLLPQPYPTPEQEHASKEDHHR*
Ga0150984_10088688213300012469Avena Fatua RhizosphereMKDGKPNNAGDPGGRHAASGRRGGGAKKQRGFVERATAMGHSGHGAERVRPHLRDQLRLKSLMPQPFPTPEQENGKDEVHR*
Ga0150984_10416551333300012469Avena Fatua RhizosphereMKDGRPNNASEPSEGPRAASTGRRSGTGRQRGFVERATAMGHSGHGADSVRPHLRDQLKLKALLPQPFPTPEQDSAPKDEHHR*
Ga0150984_10912126513300012469Avena Fatua RhizosphereMKDAKPTSASEPDNRRSQVGRRGSGPPKQRGFVERATARGHSGHGAESVRPHLRDQLRLKALLPTPFPTPETQQLSKDEHHR*
Ga0150984_11034048313300012469Avena Fatua RhizosphereMRDGKPSNTGDPESRRSVGGRRGGPAKQRGFVERATARGHSGHGAESVRPHLRDQLRLKALLPTPFPTPDTAGSKDEHHL*
Ga0150984_11225532533300012469Avena Fatua RhizosphereMKDGKPTQPGDPDIRRAGGGRRGSGPARQRGFVERATAKGHSGHGAESVRPHLRDQLRLKSLLPTPYPTPEQQSEPNKDDHHR*
Ga0150984_11432718113300012469Avena Fatua RhizosphereGMKDGKPMNTRDAEGRGPPLARRGSGPKKQRGFVERATARGHSGHGSESVRPHLRDQLRLKALLPTPFPTPDAPGSKDEHHL*
Ga0150984_11447542213300012469Avena Fatua RhizosphereMKDGKPNNVGEPDPRRPASAGRKGSRTGRQRGFVERATATGHSGHGAESVRPHLRDQLKLKSLLPQPYPTPEQDKSRRN*
Ga0150984_11633502913300012469Avena Fatua RhizosphereISAMKDGKPINPGEPDARRPGAIGGRRGSGPAKQRGFVERATARGHSGHGAESVRPHLRDQLRLKALLPTPYPTPEQQSDTGKDDHHR*
Ga0150984_11822230813300012469Avena Fatua RhizosphereMRDGKPTNAGDPDGRRPGGRRGSGPAKQRGFVERATARGHSGHGAESVRPHLRDQLRLKALLPTPFPTPEQQPLKD
Ga0150984_12027600123300012469Avena Fatua RhizosphereMKDGKPNYASEPDPRRSASAGRKGGRPGKKRGFVERATAMGHSGHGSESVRPHLRDQLKLKSLLPQPYPTPEQDTQKDGLTHD*
Ga0150984_12064342313300012469Avena Fatua RhizosphereMKDGKPNNASEPESRRASAGRKGPGMGRQRGFVERATAMGHSGHGAESVRPHLRDQLKLKSLLPQPYPTPEQENAKDENRR*
Ga0150984_12158601313300012469Avena Fatua RhizosphereTAMKDGKPNYAAEPDNTGYRRTASSGRKGGGPARQRGFVERATAQGHSGHGADSVRPHLRDQLRLKSLLPQPYPTPEQENAKDEYHR*
Ga0150984_12292759823300012469Avena Fatua RhizosphereAMKDGKPNHASEPDNVRRTASAGRKGGGPARQRGFVQRAMAAQGHSGHGSESVRPHLRDQLKLKSLLPQPYPTPEQENANTDEHR*
Ga0134087_1033805813300012977Grasslands SoilMKDGKPNYASEPDPRRSASAGRKGGRPGKQRGFVERATAMGHSGHGAESVRPHLRDQLKLKSLLPQPYPTPEQETQKDG*
Ga0134087_1054844913300012977Grasslands SoilMKDGKPNSAGEPDPRRPASAGRKGSRTGRQRGFVERATASGHSGHGAESVRPHLRDQLKLKSLLPQPYPTPEQDKSRRN*
Ga0164309_1097298413300012984SoilMKDGKPNNAGGPEHGRRTASAGRKGSGPARQRGFVERAMAAQGHSGHGAESVRPHLRDQLKLKSLLPQPYPTPEQENASKDEQHR*
Ga0164307_1089339923300012987SoilMKDGKPNNAAEPERARKASAGRRGGGPKKQRGFVERATASGHSGHGSESVRPHLRDQLQLKALLPQPYPTPEQDSAKDEHHR*
Ga0157380_1065122223300014326Switchgrass RhizosphereMKDGKPNPREPEGRRPASAGRKGVGLGRQRGFVERATAMGHSGHGSESVRPHLRDQLRLKSLLPQPFPTPESESPKDDHHRR*
Ga0190269_1010056313300018465SoilMRDGKPSNASEPESRRSPGGRRGSGPAKQRGFVERATARGHSGHGAESVRPHLRDQLKLKALLPTPYPTPDAAPSKDEHHR
Ga0190269_1020081113300018465SoilMKDGKPNNAGDPEGRRSQGGRRGSGGKQRGFVERATARGHSGHGAESVRPHLRDQLRLKALLPTPFPTPDAQPANDKQTR
Ga0190269_1054851723300018465SoilMKDGKPNSAGEPDNRRAVPAGRKAGLPRRQRGFVERATAVGHSGHGADSVRPHLRDQLKLKALLPQPFPTPAEERHPGKDDHHR
Ga0190269_1095316113300018465SoilMKDGKPNGDGEPDHRRPTRKGSGPKRQRGFVERATAAGHSGHGADSVRPHLRDQLKLKALLPQPFPMPEQQQPPAKGEHHR
Ga0190269_1115320613300018465SoilMKDGKPNHTGEPDHRRPGAGAGKRGSGPKRQRGFIERATAHGHSGHGSESVRPHLRDQLKLKALLPTPYPMPAEQAPGKDEHHR
Ga0190269_1147077523300018465SoilHTAFTLYLTQRNKAMKDGKPNNAGEPEGRRAQGGRRGGGAAKQRGFVERAIARGHSGHGAESVRPHLRDQLRLKALLSTPYPTPDAQPSKDEHHR
Ga0190274_1044864423300018476SoilMKDARPNSTGDPDRRRPGSVGRKGGGRRGFVERATATGYSGYGSESVRPHLRDQLQLKSLLPQPFPTPEQDSAKDKHHR
Ga0190274_1265932923300018476SoilMKDGRPNSTGDPDRRRPGSAGRQGGGRRGFVERATASGYSGYGSESVRPHLRDQLQLKSLMPQPFPTPEQDTAKDEHHR
Ga0190274_1292042513300018476SoilMKDGRPNSTGDPDRRRPGSLGRKGGGGRRGFVERATASGYSGYGSESVRPHLRDQLQLKSLLPQPFPTPEQDGVKDEHHR
Ga0209673_100909733300025273Arabidopsis RootMKDGKPSNAGEPQGWRPASAGRKGGPARQRGFVERATASGHSGHGSESVRPHLRDQLRLKSLLPQPYPTPEPEGPKDDQAY
Ga0209673_103463533300025273Arabidopsis RootMKDGKPNYAGEPEGRRPASAGRKGSGGGTMRQRSFVERATATGHSGHGSESVRPHLRDQLRLKSLLPQPYPTPEPESPKDDSHR
Ga0207682_1029369413300025893Miscanthus RhizosphereMKDGRPNSTGDPERRRPGSAGRQGGGRRGFVERATASGYSGYGSESVRPHLRDQLQLKSLLPQPFPTPEQDGAKDEHHR
Ga0207705_1038993723300025909Corn RhizosphereMKDGKPTDARDPDGRRLGTGGRRGSGAGRQRGFVERATAHGHSGYGADSVRPHLRDQLKLKALLPQPYPTPEQQPEPSKDDHHR
Ga0207679_1179215613300025945Corn RhizosphereMKDGKPNNAGDPDRRRAASAGRRGTGPSKQRGFVERATARGHSGHGADSVRPHLRDQLKLKALLPTPYPTPEQDNGADR
Ga0207648_1169576613300026089Miscanthus RhizosphereMKDGKPNYAREPEGRRAASAGRKPVGAVGRQRGFVERATAMGHSGHGAESVRPHLRDQLRLKSLLPQPFPTPESESPKDDHHRR
Ga0209153_109063613300026312SoilMKDGKPNYASEPESRRASAGRKGPGMGRQRGFVERATAMGHSGHGAESVRPHLRDQLKLKSLLPQPYPTP
Ga0209382_1230824113300027909Populus RhizosphereMKDGKPDIAGDSEGRRPVGAGRRGGGPVKPRGGGFVERATARGHSGHGAESVRPHLRDQLRLKALLPTPYPTPEQENGKDEHHR
Ga0247822_1173386713300028592SoilMKDGKPENPGDPDRRRPVVPGRRGGGTGKERGFVERATARGHSGHGAESVRPHLRDQLLLKALLPTPFPTPEQENGTDR
Ga0247820_1003072213300028597SoilMKDGKPEHSGDPDRRRPVAPGRRGGGTGKQRGFVERATARGHSGHGADSVRPHLRDQLQLKALLPTPF
Ga0247820_1038200013300028597SoilNAGDPEGRRSQGGRRGSGPARQKGFVERATAQGHSGHGAESVRPHLRDQLRLKALLPMPYPTPEAQPSNDSQDR
Ga0247820_1075341213300028597SoilMKDGKPTNASEPDGRRSAAAGRRGSGPVKQRGFVERATARGHSGHGAESVRPHLRDQLKLKSLLPTPYPTPEPEMGKDEHHR
Ga0247819_1098402313300028608SoilMKDGKPENAGDPDRRRPVMAGRRGGATGKQRGFVERATARGHSGHGADSVRPHLRDQLQLKALLPTPFPTPEQENGQDR
Ga0268241_1007440013300030511SoilMKDGKPNNASEPEGRRPAAGGRKGTGGAGRQRGFVERATAMGHSGYGSESVRPHLRDQLKLKSLLPQPYPTPEQESPKDKHHR
Ga0307408_10073294613300031548RhizosphereMKDGKPNNAGDPEGRRASSGRRSGAPKRQRGFVERATAKGHSGHGSESVRPHLRDQLRLKSLLPQPFPMPESDSTKDDQQRR
Ga0307408_10112288023300031548RhizosphereMKTEKPNYAGEPDSRRPASAGRKGGGPARQRGFVERATARGHSGHGAESVRPHLRDQLKLKALLPQPYPTPESQAPGGKDEHHR
(restricted) Ga0255338_100268183300031825Sandy SoilMKDGRPTSAGDPEGRRAQGGRWGGGPVRQKGFVERATARGHSGHGAESVRPHLRDQLRLKALLPTPYPTPEAQPSKDERN
Ga0310907_1034675213300031847SoilMNDGKPENAGDPDRRRPVMAGRRGSGTGKQRGFVERATARGHSGHGADSVRPHLRDQLQLKALLPTPFPTPEQENGKDR
Ga0307410_1024228013300031852RhizosphereMKDGKPINASEPDRRAGAGPGRRGSGPRKQRGFVERATAVGHSGHGSESVRPHLRDQLRLKALLPTPFPTSAEQQDIGKDEYHR
Ga0308175_10024486223300031938SoilMKDGKPNYAGDAESRRTGSGGRRGSGAGKQRGFVERATARGHSGYGADSVRPHLRDQLKLKSLLPTPYPTPEQQQEPGKDEHHR
Ga0308175_10102981623300031938SoilMKDGKPGSASDPDSRRSQAARRGNGPPRQRGFVERATAHGHSGHGADSVRPHLRDQLRLKALLPSPFPVPEDLPSKDDHHR
Ga0308175_10278224013300031938SoilMKDGKPNNASGLEHGRRTASAGRKGGGPARQRGFVERAMAAQGHSGHGAESVRPHLRDQLKLKSLLPQPYPTPEQENASNEEQHR
Ga0308174_1028705413300031939SoilMKDGKPTEARDLDGRRPATAGRRGSGAVRQRGFVERATAQGHSGYGADSVRPHLRDQLKLKALLPTPYPTPEQQPETGKDEHHR
Ga0308174_1119764113300031939SoilMKDAKPTSASEPDSRRSQVGRRGSGPPKQRGFVERATARGHSGHGAESVRPHLRDQLRLKALLPSPFPPPEPQSVTVTVKDEQQ
Ga0310885_1072095713300031943SoilMNDGKPENAGDPDRRRPVMAGRRGGATGKQRGFVERATARGHSGHGADSVRPHLRDQLQLKALLPTPFPTPEQENGKDR
Ga0307409_10250551823300031995RhizosphereMPDGKPSNGGDAERRRPLGSGSGRKGSGPVKQRGFVERATAQGHSGYGLESVRPHLRDQLRLKALLPTPFPMASAEQQDTGKDEYHR
Ga0308176_1024033023300031996SoilMKDGKPNNAGDPGGRHAASGRRGGGAKKQRGFVERATAMGHSGHGSESVRPHLRDQLKLKSLLPQPFPTPEQENGKDEVHR
Ga0308176_1097687123300031996SoilMKDGKPNYAGDAESRRAGSGGRRVSGAGKQRGFVERATARGHSGYGADSVRPHLRDQLKLKSLLPTPYPTPEQQQEPGKDEHHR
Ga0308176_1177676223300031996SoilMKDGKPNNNGDPEGRRSGVAGRRASAAGRQRGFVERATAHGHSGYGADSVRPHLRDQLKLKALLPTPYPTPEQQTEPSKDDHHR
Ga0307416_10252204623300032002RhizosphereMKDGKPNNAGDPDRRRPASSGRRGSGPAKQRGFVERATARGHSGHGADSVRPHLRDQLKLKALLPTPFPTPEQDNGADR
Ga0307416_10323495113300032002RhizosphereMKDGKPNYSGEPDGRRSTGRRRGSGPIKQRGFVERATAKGHSGIGAESVRPHLRDQLRLKALLPTPYPTPDTQPTRDENPPQ
Ga0307411_1139726823300032005RhizosphereMKDGKPTNTGEPDARRPGAGLARRGSGPKKQRGFVERATAGGHSGHGSESVRPHLRDQLRLKALLPTPFPTAS
Ga0310906_1106485023300032013SoilGQPDIAGDPEGRRPARTGRRGSATGKQRGFVERATARGHSGHGAESVRPHLRDQLRLKALLPTPYPTPEPENGKDDHHR
Ga0308173_1009465523300032074SoilMRDGKPSNAGDPEGRRPPGGRRGSGPSKQRGFVERATARGHSGHGAESVRPHLRDQLRLKALLPSPFPPPEPQSVTVTVKDEQQ
Ga0308173_1026507213300032074SoilMKDGKPNNAGDPDRRRSASAGRRGSGPSKQRGFVERATARGHSGHGADSVRPHLRDQLKLKALLPTPYPTPEQDNGADR
Ga0308173_1059131723300032074SoilMKDGKPNNAGDPGGRHAASGRRGGGAKKQRGFVERATAMGHSGHGAESVRPHLRDQLRLKSLMPQPFPTPEQENGKDEVHR
Ga0308173_1145644223300032074SoilMKDGKPTQARDLDGRRPAGRRGSGAVRQRGFVERATAQGHSGYGADSVRPHLRDQLKLKALLPTPYPTPEQQPETGKDEHHR
Ga0308173_1156817313300032074SoilMKDAKPTSASEPDSRRSQVGRRGSGPPKQRGFVERATARGHSGHGAESVRPHLRDQLRLKALLPTPFPPPETQQSSKDEHHR
Ga0315912_1027761813300032157SoilMKDGKPNYYAGPVAAVRKAGRQRGFVERATATGHSGHGAESVRPHLRDQLRLKSLLPQPFPTPDSESPKDDHHRR
Ga0315912_1095344313300032157SoilMKDGKPNYAGNPEGRRAASAGRKAIGTGRQRGFVERATATGHSGHGAESVRPHLRDQLRLKSLLPQPFPTPEAESPKDDHHRH
Ga0247829_1027097313300033550SoilMKDGQPDIAGDPEGRRPARTGRRGSATGKQRGFVERATARGHSGHGAESVRPHLRDQLRLKALLPTPYPTPEPENGKDDHHR
Ga0372943_1187905_47_3013300034268SoilMKDGKPSDAGDLDGRRAGSAGRRASSLGRQRGFVERATARGHSGHGAESVRPHLRDQLRLKALLPTPYPTPEQQREPGKDDHHR
Ga0372946_0410494_122_3763300034384SoilMKDGKPNNAGDPDEGRRVASAGRLGNGPARQRGFVTRATAKGHSGHGAESVRPHLRDQLRLKSLLPQPYPTPEQEHASKDDHHR

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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