Basic Information | |
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Family ID | F071491 |
Family Type | Metagenome |
Number of Sequences | 122 |
Average Sequence Length | 43 residues |
Representative Sequence | GSYGQKYYHYSLLRTLEDGFGLGGYLGNANAVTPIASIWRTPAG |
Number of Associated Samples | 85 |
Number of Associated Scaffolds | 122 |
Quality Assessment | |
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Transcriptomic Evidence | No |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 0.82 % |
% of genes near scaffold ends (potentially truncated) | 96.72 % |
% of genes from short scaffolds (< 2000 bps) | 85.25 % |
Associated GOLD sequencing projects | 83 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.17 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (88.525 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (45.082 % of family members) |
Environment Ontology (ENVO) | Unclassified (48.361 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Unclassified (45.082 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62. |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 9.72% β-sheet: 0.00% Coil/Unstructured: 90.28% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.17 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Freshwater Sediment Vadose Zone Soil Tropical Forest Soil Grass Soil Agricultural Soil Soil Soil Soil Hardwood Forest Soil Tropical Forest Soil Corn, Switchgrass And Miscanthus Rhizosphere Agricultural Soil Populus Rhizosphere |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
FE1_06589920 | 2189573002 | Grass Soil | YYHFSVLRTLEDGFGLPSYLGSANDVTPIAVWRTLTS |
Ga0066388_1062099433 | 3300005332 | Tropical Forest Soil | AVPGSYGAKHYAYSLLRTFEDGFGLGSYLGDANAVTPVNEIWR* |
Ga0070708_1011970402 | 3300005445 | Corn, Switchgrass And Miscanthus Rhizosphere | PQVVPGSYDTQWFHYSLLRTLEDGFGLPAYLGDANEVAPINTIWQSP* |
Ga0070708_1012676732 | 3300005445 | Corn, Switchgrass And Miscanthus Rhizosphere | GSYDQKYFHYSVLRTIEDGFALPGYLGNANDVTPIASIWRAPAG* |
Ga0070706_1008131692 | 3300005467 | Corn, Switchgrass And Miscanthus Rhizosphere | SYDTQWFHYSLLRTLEDGFALPEYLGDANAVTPIDSIWQSP* |
Ga0066691_103171181 | 3300005586 | Soil | YDTQWFHYSLLRTLEDGFALPEYLGDANAVTPIDAIWRSP* |
Ga0066903_1001532334 | 3300005764 | Tropical Forest Soil | PGSYGQKYYHYSLLRTLEDGFRLGGYLGNANAVTPIASIWRPPAS* |
Ga0066903_1005420362 | 3300005764 | Tropical Forest Soil | MFQFVHYSLLRTIEDGFRLDEYLGNSDAVTPIASVWSAPAG* |
Ga0066903_1012122432 | 3300005764 | Tropical Forest Soil | AIISPLAVPGSYGQKYYHYSLLRTLEDGFRLGGYLGNANAISPIASIWRAPSR* |
Ga0066903_1020248951 | 3300005764 | Tropical Forest Soil | CAILSPLATPGSYGQKYYHYSLLRTIEDGFRLRGYLGNASAVAPIASIWRTPTG* |
Ga0070717_103595182 | 3300006028 | Corn, Switchgrass And Miscanthus Rhizosphere | YSLLRTLEDGFGLRAYLGNANAVTPIASIWRTPAG* |
Ga0070717_115190951 | 3300006028 | Corn, Switchgrass And Miscanthus Rhizosphere | GTYGQTYYHYSLLRTLEDGFGLAPYLGNANAVTPIASIWRPPPG* |
Ga0070712_1005642031 | 3300006175 | Corn, Switchgrass And Miscanthus Rhizosphere | AGTYGQTYYHYSLLRTLEDGFGLRAYLGNANAVTPIATIWRTPTG* |
Ga0066658_103353651 | 3300006794 | Soil | RAHYSLLRTLEDGFRLDGYVGYANDVKPITGMWR* |
Ga0079221_102289122 | 3300006804 | Agricultural Soil | AAAGSYAHKYYHYSLLRTLEDGFRLGGYLGNAAAVGPIASIWRTPAG* |
Ga0075425_1000696821 | 3300006854 | Populus Rhizosphere | HYSLLRTLEDGFGLAPYLGNANAVTPIASIWRPPPG* |
Ga0075426_100174801 | 3300006903 | Populus Rhizosphere | DQKYYHYSVLRTIEDGFRLNSYLGNANAVTPVNDIWR* |
Ga0099827_105212732 | 3300009090 | Vadose Zone Soil | AILSPLAIPGSYGQQFFHYSLLRTIEDGFRLAGHLGNANDVAPVAGIWNSQ* |
Ga0126374_108397482 | 3300009792 | Tropical Forest Soil | SYAHKYYHYSVLRTLEDGFRLGGHLGNANAVPPIAGTWRTPAR* |
Ga0126384_106439402 | 3300010046 | Tropical Forest Soil | GRKYYHYSVLRTLEDGFRLGSYLGDANAVKPVNNIWR* |
Ga0126384_108293521 | 3300010046 | Tropical Forest Soil | GSYGQKYYHYSVLRTVEDGFRLGGHLGAANAVPPIAGIWRAPAG* |
Ga0126384_112148461 | 3300010046 | Tropical Forest Soil | QKYYHYSVLRTVEDGFRLGGHLGAANAVTPIAGIWRAPAG* |
Ga0126373_100706811 | 3300010048 | Tropical Forest Soil | AIISPLAVPGSYGQKYYHYSLLRTLEDGFRLGGYLGNANAVSPIASIWRAPSG* |
Ga0126373_101989922 | 3300010048 | Tropical Forest Soil | VCAIISPLATAGSYDQQYYHDSLLRTIEDGFRLDGYLGNADAVTPIASIWHAPAS* |
Ga0126373_115039912 | 3300010048 | Tropical Forest Soil | AIISPLAVPGSYGQKYYHYSLLRTLEDGFRLGGYLGNANAVTPIASIWRPPAS* |
Ga0126373_125106331 | 3300010048 | Tropical Forest Soil | SLLRTIEDGFRLDGYLGNADAVTPIASVWSATAG* |
Ga0126373_129515091 | 3300010048 | Tropical Forest Soil | IISPLAIPGRYPQAYYHYSVLRTVEDGFRLAGYLGNANDVTPIASVWR* |
Ga0126370_115709342 | 3300010358 | Tropical Forest Soil | CAIISPLAVAGSYGQKYYHYSLLRTIEDGFGLSSYLGNANAVTPINAVWQTRG* |
Ga0126370_120304832 | 3300010358 | Tropical Forest Soil | PGSYDTKWYHYSLLRTLEDGFGISTYLGDANEVTPLSSIWRQT* |
Ga0126376_100382151 | 3300010359 | Tropical Forest Soil | PGSYGQKYYHYSLLRTLEDGFSLGGYLGNANAVTPIARIWRTPAG* |
Ga0126372_103868801 | 3300010360 | Tropical Forest Soil | SLLRTLEDGFRLGGYLGNANAVAPIASIWRPPAS* |
Ga0126372_112473681 | 3300010360 | Tropical Forest Soil | PLAVPGSYGQKYYHYSLLRTLEDGFRLGGYLGNANAVSPIASIWRAPSG* |
Ga0126378_102197414 | 3300010361 | Tropical Forest Soil | PGSYGQKYYHYSLLRTLEDGFRLRGYLGNASAVAPIASIWHAPTG* |
Ga0126378_108352253 | 3300010361 | Tropical Forest Soil | CAIISPLAVPGSYGHKYYHYSLLRTLEDGFRLGGYLGNANNVTPIASIWRTPAN* |
Ga0126378_109618831 | 3300010361 | Tropical Forest Soil | YHYSLLRTLEDGFRLGGYLGNAAAVGPIASIWRTPAG* |
Ga0126378_123929231 | 3300010361 | Tropical Forest Soil | GQKYYHYSLLRTLEDGFGLGGYLGNANAVTPIARIWRTRAG* |
Ga0126379_124827011 | 3300010366 | Tropical Forest Soil | YYHYSLLRTLEDGFRLRGYLGNASAVAPIASIWHTPAG* |
Ga0126381_1001023461 | 3300010376 | Tropical Forest Soil | YGQQYYHYCLPRTIEDGFRLGGYLGNADAVTPIASVWRAPAS* |
Ga0126381_1014691281 | 3300010376 | Tropical Forest Soil | PLAVPGSYGHKYYHYSLLRTLEDGFGLRQYLGNANAVTPIASIWRTPAN* |
Ga0126381_1048263742 | 3300010376 | Tropical Forest Soil | GSYGHKYYHYSLLRTLEDGFQLGRYLGNANAVTPIASIWQTPAN* |
Ga0126383_110234721 | 3300010398 | Tropical Forest Soil | SLLRTLEDGFGLGAYLGNANAVTPIARIWRTPAG* |
Ga0126383_115350362 | 3300010398 | Tropical Forest Soil | LAAAGSYGHTYYHYSLLRTIEDGFGLRPYLGNANAVTPIASIWRRPAN* |
Ga0137391_104849301 | 3300011270 | Vadose Zone Soil | HYSLLRTIEDGLGLTGHVGNANDVTAINTIWRTPSS* |
Ga0137389_100489536 | 3300012096 | Vadose Zone Soil | LSPLAIAGSYGQQFFHYSLLRTIEDGFRLAGHLGNANDVAPVAGIWNSQ* |
Ga0137365_110103802 | 3300012201 | Vadose Zone Soil | LTHYSVLRTLEDGFGISEYVGNANAVTAISEIWR* |
Ga0137384_103873471 | 3300012357 | Vadose Zone Soil | LAVPGSYGQKYYHYSVLRTLEDGFGITSYLGDANEVSPISSIWRR* |
Ga0137404_118772072 | 3300012929 | Vadose Zone Soil | QRLTHYSLLRTIEDGFGLGPYLGNANAVTPIASIWRAPVG* |
Ga0126369_130138461 | 3300012971 | Tropical Forest Soil | GSYGQKYYHYSLLRTLEDGFDLGAYLGNANAVTPLARIWRTPTG* |
Ga0182037_103918881 | 3300016404 | Soil | YYHYSLLRTLEDGFGLAPYLGNANAVTPITSIWRPPAG |
Ga0187802_103376252 | 3300017822 | Freshwater Sediment | MFHVSSLLRTLEDGFGLPGYVGNANDVTPINGIWY |
Ga0210402_110869681 | 3300021478 | Soil | ATAGSYGQQYFHYSLLRTLEDGFGLGPYLGSANAVTPIASIWRAPVH |
Ga0126371_105488483 | 3300021560 | Tropical Forest Soil | SYGQKYYHYSLLRTLEDGFSLGGYLGNANAVTPIARIWRTPAG |
Ga0126371_109261643 | 3300021560 | Tropical Forest Soil | SYGQKYYHYSLLRTLEDGFRLGGYLGNANNVTPIASIWRTPAN |
Ga0126371_122549952 | 3300021560 | Tropical Forest Soil | VCAIISPLATAGSYDQQYYHDSLLRTIEDGFRLDGYLGNADAVTPIASIWHAPAS |
Ga0126371_135916031 | 3300021560 | Tropical Forest Soil | GQKYYHYSLLRTLEDGFSLGAYLGNANAVTPIAGIWRTPAG |
Ga0207692_101955292 | 3300025898 | Corn, Switchgrass And Miscanthus Rhizosphere | LATTATYGQTYYHYSLLRTLEDGFGLTPYLGNANAVTPIASIWRPPAS |
Ga0207684_105899481 | 3300025910 | Corn, Switchgrass And Miscanthus Rhizosphere | QTYYHYSVLRTIEDGFALPGYLGNANDVTPIASIWRAPAG |
Ga0207700_103882031 | 3300025928 | Corn, Switchgrass And Miscanthus Rhizosphere | LAAVGSYRQKYYHYSLLRTLEDGFGLRGYLGHASAVTPIASIWRTPAGRR |
Ga0207664_109119732 | 3300025929 | Agricultural Soil | AYAQKYFHYSLLRTLEDGFRLSGYLGNAGAVTPIASIWRTPAG |
Ga0257153_11186751 | 3300026490 | Soil | HYSLLRTLEDGFRLGGYLGNANAVTPIASIWRTPAG |
Ga0209178_11969751 | 3300027725 | Agricultural Soil | ISPLAFAGSYGQKYYHYSLLRTLEDGFRLDGYLGNANAVTAIGGIWRAPAG |
Ga0209701_105547102 | 3300027862 | Vadose Zone Soil | ILSPLAISGSYGQQFFHYSLLRTIEDGFRLAGHLGNANDVAPVAGIWNSQ |
Ga0318571_103748231 | 3300031549 | Soil | KYYHYSLLRTVEDGFRLRGYLGDANRVAPIASVWRAPAG |
Ga0318528_105094631 | 3300031561 | Soil | AVVIVLLAVPGSHGQKYYHYSLLRTLEDGFGLGAYLGNANAVTPIGRIWRTPAS |
Ga0318528_105527931 | 3300031561 | Soil | KYYHYSLLRTLEDGFRLGGYLGDANRVAPIASIWRAPAG |
Ga0318573_101027601 | 3300031564 | Soil | HYSLLRTIEDGFGLRPYLGNANAVTPIASIWRPPAN |
Ga0318573_102851951 | 3300031564 | Soil | YYHYSLLRTVEDGFRLRGYLGNAGAVAPIASIWRTPAG |
Ga0318555_105328591 | 3300031640 | Soil | CAIISPLAVAGSYGRQYYHYSVLRTVEDGFRLRGYLGNAGAVAPIASIWRTPAG |
Ga0318542_104525541 | 3300031668 | Soil | ILSPLATPGSYGQKYYHYSLLRTLEDGFRLHGYLGNANAVAPIASIWHTPTG |
Ga0318560_106469691 | 3300031682 | Soil | YGQTYYHYSLLRTLEDGFGLAPYLGNANAVTPINSIWRPPGG |
Ga0306917_100139557 | 3300031719 | Soil | LATAGTYGQTYYHYSLLRTLEDGFGLAPYLGNANAVTPITSIWRPPAG |
Ga0318493_100398184 | 3300031723 | Soil | YSLLRTVEDGFRLRGYLGKARAVAPIASIWRTPAG |
Ga0318493_102907161 | 3300031723 | Soil | HYSLLRTIEDGFNLGQYLGNANAVTPVTSIWRPPGG |
Ga0318500_1000112810 | 3300031724 | Soil | RTLEDGFNLGGYLGNANAVTPIARIWRVPAAHAAAHET |
Ga0318501_100025781 | 3300031736 | Soil | GTYGQTYYHYSLLRTLEDGFGLAPYLGNANAVTPITSIWRPPAG |
Ga0318501_107369211 | 3300031736 | Soil | HKYYHYSLLRTIQDGFGLRPYLGNASAVPPIARIWRPPAN |
Ga0318492_105640662 | 3300031748 | Soil | SYGQTYYHYSLLRTIEDGFNLGQYLGNANAVTPVTSIWRPPGG |
Ga0318535_100322171 | 3300031764 | Soil | HYSLLRTLEDGFGLGGYLGNANAVTPIASIWRTPAG |
Ga0318535_102928572 | 3300031764 | Soil | SYSHKYYHYSLLRTIQDGFGLRPYLGNASAVPPIARIWRPPAN |
Ga0318535_104029511 | 3300031764 | Soil | TYYHYSLLRTLEDGFGLAPYLGNANAVTPINSIWRPPGG |
Ga0318554_101009251 | 3300031765 | Soil | KYYHYSLLRTLEDGFGLGAYLGNANAVTPIASIWHPPAG |
Ga0318554_106954121 | 3300031765 | Soil | LATAGTYGQTYYHYSLLRTLEDGFGLAPYLGNANAVTPINSIWRPPGG |
Ga0318509_103187721 | 3300031768 | Soil | YYHYSLLRTLEDGFRLGGYLGDANRVAPIASIWRAPAG |
Ga0318521_101028661 | 3300031770 | Soil | YSLLRTLEDGFRLGGYLGDANRVAPIASIWRAPAG |
Ga0318521_106458321 | 3300031770 | Soil | YYHYSLLRTIEDGFGLRPYLGNANAVTPIASIWRPPAG |
Ga0318566_103019922 | 3300031779 | Soil | IISRLAVPGSHGQKYYHYSLLRTLEDGFGLGAYLGNANAVTPIGRIWRTPAS |
Ga0318508_10257911 | 3300031780 | Soil | SPLAIAGAYGQTYYHYSLLRTLEDGFNLGGYLGNANAVTPIASIWRPPAN |
Ga0318552_100314651 | 3300031782 | Soil | TYYHYSLLRTLEDGFGLAPYLGNANAVTPITSIWRPPAG |
Ga0318557_100467751 | 3300031795 | Soil | TYYHYSLLRTLEDGFNLGGYLGNANAVTPIARIWRVPAAHAAAHET |
Ga0318557_104725531 | 3300031795 | Soil | HYSLLRTLEDGFGLGAYLGNANAVTPIGRIWRTPAS |
Ga0318550_100390333 | 3300031797 | Soil | YHYSLLRTIEDGFGLRPYLGNANAVTPIASIWRPPAN |
Ga0318523_101225701 | 3300031798 | Soil | YSLLRTIEDGFGLRPYLGNANAVTPIASIWRPPAN |
Ga0318567_101625011 | 3300031821 | Soil | AQKYYHYSLLRTLEDGFRLGGYLGDANRVAPIASIWRAPAG |
Ga0318564_102700402 | 3300031831 | Soil | YSLLRTLEDGFGLGGYLGNANAVTPIASIWRTPAG |
Ga0318499_102996281 | 3300031832 | Soil | VCAIISPLAVAGSYGRKYYHYSVLRTVEDGFRLRGYLGNAGAVAPIASIWRTPAG |
Ga0318517_105193611 | 3300031835 | Soil | KYYHYSLLRTLEDGFGLGGYLGNANAVTPIASIWRTPAG |
Ga0318544_103227212 | 3300031880 | Soil | GQKYYHYSLLRTIEDGFSLRPYLGNANAVTPITGIWRPPAG |
Ga0306925_104704412 | 3300031890 | Soil | SYARKYYHYSLLHTVEDGFRLRGYLGNAGAVAPIASIWRTPAG |
Ga0318520_104336372 | 3300031897 | Soil | GSYGQKYYHYSLLRTLEDGFGLGGYLGNANAVTPIASIWRTPAG |
Ga0306923_123667171 | 3300031910 | Soil | YHYSLLRTLEDGFGLGAYLGNANAVTPIASIWHPPAG |
Ga0310913_111486761 | 3300031945 | Soil | IISPLAVAGSYGQKYYHYSLLRTLEDGFGLGGYLGNANAVTPIASIWRTPAG |
Ga0310909_102235661 | 3300031947 | Soil | PLAVAGSYGHKYYHYSLLRTLEDGFGLGGYLGNANAVTPIASIWRTPAG |
Ga0318563_104891001 | 3300032009 | Soil | AGSYGQKYYHYSLLRTLEDGFGLGGYLGNANAVTPIASIWRTPAG |
Ga0318563_106670442 | 3300032009 | Soil | YSVLRTVEDGFRLRGYLGNAGAVAPIASIWRTPAG |
Ga0318507_100124015 | 3300032025 | Soil | YHYSLLRTLEDGFNLGGYLGNANAVTPIARIWRVPAAHAAAHET |
Ga0318549_102447312 | 3300032041 | Soil | YGQTYYHYSLLRTLEDGFGLGGYLGNANAVTPINSIWQTPPG |
Ga0318556_101070722 | 3300032043 | Soil | HYSVLRTVEDGFRLRGYLGNAGAVAPIASIWRTPAG |
Ga0318575_100042287 | 3300032055 | Soil | ATAGTYGQTYYHYSLLRTLEDGFGLAPYLGNANAVTPITSIWRPPAG |
Ga0318575_101575642 | 3300032055 | Soil | YYSYSLLRTLEDGFRLGGYLGNANTVAPIATIWRPPGG |
Ga0318510_105546752 | 3300032064 | Soil | TAGSYAQKYYHYSLLRTLEDGFRLGGYLGNANKVAPIAGIWGAPGG |
Ga0318514_104626901 | 3300032066 | Soil | ISPLAIAGAYGQTYYHYSLLRTLEDGFNLGGYLGNANAVTPIARIWRVPAAHAAAHET |
Ga0318514_105411252 | 3300032066 | Soil | SPLATAGSYAQKYYHYSLLRTLEDGFRLGGYLGNANKVAPIAGIWGAPGG |
Ga0318524_106105501 | 3300032067 | Soil | YHYSLLRTLEDGFGLGGYLGNANAVTPIASIWRTPAG |
Ga0318524_106549281 | 3300032067 | Soil | AVGAGDGQKYYHYSLLRTLEDGFGLGAYLGNANAVTPIGRIWRTPAS |
Ga0306924_123001102 | 3300032076 | Soil | GSYGQKYYHYSLLRTIEDGFSLRPYLGSANAVTPITGIWRPPAG |
Ga0318525_102363723 | 3300032089 | Soil | QKYYHYSLLRTLEDGFRLGGYLGDANRVAPIASIWRAPAG |
Ga0318525_106396542 | 3300032089 | Soil | YSLLRTLEDGFGLGGYLGNANAVTPINSIWQTPPG |
Ga0318577_105873952 | 3300032091 | Soil | TYYHYSLLRTIEDGFGLRPYLGNANAVTPIASIWRPPAG |
Ga0307471_1000201306 | 3300032180 | Hardwood Forest Soil | PGSYGQKYYHYSLLRTLEDGFGLRPYLGNANAVTPIASIWRTPAG |
Ga0307471_1034824362 | 3300032180 | Hardwood Forest Soil | PGSYGQKYYHYSLLRTFEDGYRLGTYLGDANAVTPVSDIWR |
Ga0306920_1000163301 | 3300032261 | Soil | PLAIAGSYGQTYYHYSLLRTIEDGFNLGQYLGNANAVTPVTSIWRPPGG |
Ga0310914_113833502 | 3300033289 | Soil | HYSLLRTLEDGFRLGGYLGNANTVAPIATIWRPPGG |
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