Metagenome / Metatranscriptome Family F071431

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F071431
Family Type	Metagenome / Metatranscriptome
Number of Sequences	122
Average Sequence Length	55 residues
Representative Sequence	PGSYTIVAVEDAWGFQWMQPGVLGRYVQHGQNLTIGELMKGSVHLPDPVEVQPR
Number of Associated Samples	98
Number of Associated Scaffolds	122

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	2.46 %
% of genes near scaffold ends (potentially truncated)	93.44 %
% of genes from short scaffolds (< 2000 bps)	82.79 %
Associated GOLD sequencing projects	90
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.36

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (96.721 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (32.787 % of family members)
Environment Ontology (ENVO)	Unclassified (31.148 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (52.459 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 7.32% β-sheet: 12.20% Coil/Unstructured: 80.49%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.36
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.36
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 122 Family Scaffolds
PF07690	MFS_1	4.10
PF03825	Nuc_H_symport	4.10
PF01244	Peptidase_M19	3.28
PF03486	HI0933_like	3.28
PF00583	Acetyltransf_1	2.46
PF04055	Radical_SAM	2.46
PF13442	Cytochrome_CBB3	2.46
PF01408	GFO_IDH_MocA	1.64
PF02894	GFO_IDH_MocA_C	1.64
PF13618	Gluconate_2-dh3	1.64
PF01546	Peptidase_M20	1.64
PF00891	Methyltransf_2	1.64
PF09957	VapB_antitoxin	1.64
PF02223	Thymidylate_kin	0.82
PF01904	DUF72	0.82
PF01261	AP_endonuc_2	0.82
PF00753	Lactamase_B	0.82
PF00202	Aminotran_3	0.82
PF01433	Peptidase_M1	0.82
PF13188	PAS_8	0.82
PF07040	DUF1326	0.82
PF07366	SnoaL	0.82
PF16864	Dimerisation2	0.82
PF01841	Transglut_core	0.82
PF13185	GAF_2	0.82
PF13852	DUF4197	0.82
PF07731	Cu-oxidase_2	0.82
PF00067	p450	0.82
PF04140	ICMT	0.82
PF01850	PIN	0.82
PF12146	Hydrolase_4	0.82
PF08450	SGL	0.82
PF13620	CarboxypepD_reg	0.82
PF17189	Glyco_hydro_30C	0.82
PF13857	Ank_5	0.82
PF13194	DUF4010	0.82
PF13561	adh_short_C2	0.82
PF03743	TrbI	0.82
PF00072	Response_reg	0.82
PF13408	Zn_ribbon_recom	0.82

COG ID	Name	Functional Category	% Frequency in 122 Family Scaffolds
COG0493	NADPH-dependent glutamate synthase beta chain or related oxidoreductase	Amino acid transport and metabolism [E]	6.56
COG0654	2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases	Energy production and conversion [C]	6.56
COG2814	Predicted arabinose efflux permease AraJ, MFS family	Carbohydrate transport and metabolism [G]	4.10
COG1053	Succinate dehydrogenase/fumarate reductase, flavoprotein subunit	Energy production and conversion [C]	3.28
COG2509	FAD-dependent dehydrogenase	General function prediction only [R]	3.28
COG2355	Zn-dependent dipeptidase, microsomal dipeptidase homolog	Posttranslational modification, protein turnover, chaperones [O]	3.28
COG2081	Predicted flavoprotein YhiN	General function prediction only [R]	3.28
COG2072	Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD	Inorganic ion transport and metabolism [P]	3.28
COG1249	Dihydrolipoamide dehydrogenase (E3) component of pyruvate/2-oxoglutarate dehydrogenase complex or glutathione oxidoreductase	Energy production and conversion [C]	3.28
COG0644	Dehydrogenase (flavoprotein)	Energy production and conversion [C]	3.28
COG0492	Thioredoxin reductase	Posttranslational modification, protein turnover, chaperones [O]	3.28
COG0446	NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase, or a related oxidoreductase	Lipid transport and metabolism [I]	3.28
COG3634	Alkyl hydroperoxide reductase subunit AhpF	Defense mechanisms [V]	3.28
COG0029	Aspartate oxidase	Coenzyme transport and metabolism [H]	3.28
COG0673	Predicted dehydrogenase	General function prediction only [R]	1.64
COG5588	Uncharacterized conserved protein, DUF1326 domain	Function unknown [S]	0.82
COG3391	DNA-binding beta-propeller fold protein YncE	General function prediction only [R]	0.82
COG3386	Sugar lactone lactonase YvrE	Carbohydrate transport and metabolism [G]	0.82
COG2948	Type IV secretory pathway, VirB10 component	Intracellular trafficking, secretion, and vesicular transport [U]	0.82
COG2132	Multicopper oxidase with three cupredoxin domains (includes cell division protein FtsP and spore coat protein CotA)	Cell cycle control, cell division, chromosome partitioning [D]	0.82
COG2124	Cytochrome P450	Defense mechanisms [V]	0.82
COG1801	Sugar isomerase-related protein YecE, UPF0759/DUF72 family	General function prediction only [R]	0.82
COG0308	Aminopeptidase N, contains DUF3458 domain	Amino acid transport and metabolism [E]	0.82
COG0125	Thymidylate kinase	Nucleotide transport and metabolism [F]	0.82

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	97.54 %
Unclassified	root	N/A	2.46 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	97.54 %
Unclassified	root	N/A	2.46 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	96.72 %
Unclassified	root	N/A	2.46 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.82 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	51.64 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	4.10 %
Unclassified	root	N/A	2.46 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	1.64 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.82 %
Opisthokonta	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta	0.82 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	11.48 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	6.56 %
Unclassified	root	N/A	2.46 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.64 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1.64 %
Fungi	kingdom	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi	0.82 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.82 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.82 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	11.48 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	5.74 %
Unclassified	root	N/A	2.46 %
Candidatus Acidoferrales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales	0.82 %
Fungi incertae sedis	no rank	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis	0.82 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	0.82 %
Caulobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales	0.82 %
Gemmatimonadetes	class	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes	0.82 %
unclassified Gemmatimonadetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes	0.82 %
Opitutae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	0.82 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	11.48 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	5.74 %
Unclassified	root	N/A	2.46 %
Candidatus Acidoferrum	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum	0.82 %
unclassified Opitutae	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae	0.82 %
Rhodanobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae	0.82 %
Zoopagomycota	phylum	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Zoopagomycota	0.82 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.82 %
Caulobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae	0.82 %
Gemmatimonadales	order	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	0.82 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	11.48 %
Unclassified	root	N/A	2.46 %
Granulicella	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella	0.82 %
Opitutae bacterium Tous-C1TDCM	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium Tous-C1TDCM	0.82 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	0.82 %
Phenylobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Phenylobacterium	0.82 %
Zoopagomycotina	subphylum	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Zoopagomycota → Zoopagomycotina	0.82 %
unclassified Acidobacteriaceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae	0.82 %
Gemmatimonadaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	0.82 %
Rhodanobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae	0.82 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.82 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	11.48 %
Unclassified	root	N/A	2.46 %
Granulicella rosea	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella rosea	0.82 %
unclassified Gemmatimonadaceae	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae	0.82 %
Acidobacteriaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	0.82 %
Zoopagomycetes	class	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Zoopagomycota → Zoopagomycotina → Zoopagomycetes	0.82 %
unclassified Phenylobacterium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Phenylobacterium → unclassified Phenylobacterium	0.82 %
Opitutae bacterium Tous-C1TDCM	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium Tous-C1TDCM	0.82 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	0.82 %
Rhodanobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae	0.82 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.82 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	11.48 %
Unclassified	root	N/A	2.46 %
Phenylobacterium sp. J367	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Phenylobacterium → unclassified Phenylobacterium → Phenylobacterium sp. J367	0.82 %
Gemmatimonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	0.82 %
Zoopagales	order	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Zoopagomycota → Zoopagomycotina → Zoopagomycetes → Zoopagales	0.82 %
Granulicella rosea	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella rosea	0.82 %
Acidobacteriaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	0.82 %
Opitutae bacterium Tous-C1TDCM	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium Tous-C1TDCM	0.82 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	0.82 %
Rhodanobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae	0.82 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.82 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	11.48 %
Unclassified	root	N/A	2.46 %
Piptocephalidaceae	family	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Zoopagomycota → Zoopagomycotina → Zoopagomycetes → Zoopagales → Piptocephalidaceae	0.82 %
Phenylobacterium sp. J367	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Phenylobacterium → unclassified Phenylobacterium → Phenylobacterium sp. J367	0.82 %
Gemmatimonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	0.82 %
Granulicella rosea	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella rosea	0.82 %
Acidobacteriaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	0.82 %
Opitutae bacterium Tous-C1TDCM	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium Tous-C1TDCM	0.82 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	0.82 %
Rhodanobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae	0.82 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.82 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	11.48 %
Unclassified	root	N/A	2.46 %
Syncephalis	genus	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Zoopagomycota → Zoopagomycotina → Zoopagomycetes → Zoopagales → Piptocephalidaceae → Syncephalis	0.82 %
Phenylobacterium sp. J367	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Phenylobacterium → unclassified Phenylobacterium → Phenylobacterium sp. J367	0.82 %
Gemmatimonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	0.82 %
Granulicella rosea	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella rosea	0.82 %
Acidobacteriaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	0.82 %
Opitutae bacterium Tous-C1TDCM	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium Tous-C1TDCM	0.82 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	0.82 %
Rhodanobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae	0.82 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.82 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	11.48 %
Unclassified	root	N/A	2.46 %
Syncephalis pseudoplumigaleata	species	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Zoopagomycota → Zoopagomycotina → Zoopagomycetes → Zoopagales → Piptocephalidaceae → Syncephalis → Syncephalis pseudoplumigaleata	0.82 %
Phenylobacterium sp. J367	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Phenylobacterium → unclassified Phenylobacterium → Phenylobacterium sp. J367	0.82 %
Gemmatimonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	0.82 %
Granulicella rosea	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella rosea	0.82 %
Acidobacteriaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	0.82 %
Opitutae bacterium Tous-C1TDCM	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium Tous-C1TDCM	0.82 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	0.82 %
Rhodanobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae	0.82 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.82 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001546\|JGI12659J15293_10109506	All Organisms → cellular organisms → Bacteria → Acidobacteria	600	Open in IMG/M
3300001593\|JGI12635J15846_10090906	All Organisms → cellular organisms → Bacteria	2209	Open in IMG/M
3300001593\|JGI12635J15846_10515822	All Organisms → cellular organisms → Bacteria → Acidobacteria	703	Open in IMG/M
3300001661\|JGI12053J15887_10653144	All Organisms → cellular organisms → Bacteria	500	Open in IMG/M
3300002907\|JGI25613J43889_10138204	All Organisms → cellular organisms → Bacteria → Acidobacteria	625	Open in IMG/M
3300002907\|JGI25613J43889_10187715	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	551	Open in IMG/M
3300002917\|JGI25616J43925_10216923	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	731	Open in IMG/M
3300004091\|Ga0062387_100356142	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	968	Open in IMG/M
3300004092\|Ga0062389_104247851	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	539	Open in IMG/M
3300005176\|Ga0066679_10285023	All Organisms → cellular organisms → Bacteria	1071	Open in IMG/M
3300005180\|Ga0066685_10155308	All Organisms → cellular organisms → Bacteria	1558	Open in IMG/M
3300005332\|Ga0066388_103328864	All Organisms → cellular organisms → Bacteria	821	Open in IMG/M
3300005332\|Ga0066388_105500807	All Organisms → cellular organisms → Bacteria → Acidobacteria	642	Open in IMG/M
3300005451\|Ga0066681_10089379	All Organisms → cellular organisms → Bacteria	1748	Open in IMG/M
3300005529\|Ga0070741_10196618	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	1968	Open in IMG/M
3300005538\|Ga0070731_10400270	All Organisms → cellular organisms → Bacteria	912	Open in IMG/M
3300005538\|Ga0070731_10894124	All Organisms → cellular organisms → Bacteria → Acidobacteria	589	Open in IMG/M
3300005921\|Ga0070766_10467543	All Organisms → cellular organisms → Bacteria	834	Open in IMG/M
3300005944\|Ga0066788_10069431	All Organisms → cellular organisms → Bacteria	847	Open in IMG/M
3300006176\|Ga0070765_101130384	All Organisms → cellular organisms → Bacteria → Acidobacteria	740	Open in IMG/M
3300007258\|Ga0099793_10086499	All Organisms → cellular organisms → Bacteria	1437	Open in IMG/M
3300007258\|Ga0099793_10579388	All Organisms → cellular organisms → Bacteria → Acidobacteria	561	Open in IMG/M
3300007265\|Ga0099794_10622365	All Organisms → cellular organisms → Bacteria → Acidobacteria	572	Open in IMG/M
3300007788\|Ga0099795_10542244	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	547	Open in IMG/M
3300009038\|Ga0099829_10723533	All Organisms → cellular organisms → Bacteria → Acidobacteria	827	Open in IMG/M
3300009088\|Ga0099830_11587648	All Organisms → cellular organisms → Bacteria → Acidobacteria	545	Open in IMG/M
3300009089\|Ga0099828_10427410	All Organisms → cellular organisms → Bacteria	1194	Open in IMG/M
3300009143\|Ga0099792_10431665	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium Tous-C1TDCM	812	Open in IMG/M
3300009143\|Ga0099792_10748489	All Organisms → cellular organisms → Bacteria	636	Open in IMG/M
3300010046\|Ga0126384_10214174	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1534	Open in IMG/M
3300010048\|Ga0126373_12076772	All Organisms → cellular organisms → Bacteria → Acidobacteria	630	Open in IMG/M
3300010321\|Ga0134067_10005338	All Organisms → cellular organisms → Bacteria	3423	Open in IMG/M
3300010358\|Ga0126370_10930465	All Organisms → cellular organisms → Bacteria → Acidobacteria	787	Open in IMG/M
3300010366\|Ga0126379_11732839	All Organisms → cellular organisms → Bacteria → Acidobacteria	729	Open in IMG/M
3300010376\|Ga0126381_100023990	All Organisms → cellular organisms → Bacteria	7196	Open in IMG/M
3300010376\|Ga0126381_103582975	All Organisms → cellular organisms → Bacteria → Acidobacteria	609	Open in IMG/M
3300012189\|Ga0137388_10608961	All Organisms → cellular organisms → Bacteria	1015	Open in IMG/M
3300012198\|Ga0137364_11475986	All Organisms → cellular organisms → Bacteria → Acidobacteria	501	Open in IMG/M
3300012202\|Ga0137363_11606560	All Organisms → cellular organisms → Bacteria → Acidobacteria	542	Open in IMG/M
3300012203\|Ga0137399_11502375	All Organisms → cellular organisms → Bacteria → Acidobacteria	561	Open in IMG/M
3300012205\|Ga0137362_10239921	All Organisms → cellular organisms → Bacteria → Acidobacteria	1565	Open in IMG/M
3300012205\|Ga0137362_10298429	All Organisms → cellular organisms → Bacteria	1395	Open in IMG/M
3300012207\|Ga0137381_11781249	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Zoopagomycota → Zoopagomycotina → Zoopagomycetes → Zoopagales → Piptocephalidaceae → Syncephalis → Syncephalis pseudoplumigaleata	505	Open in IMG/M
3300012357\|Ga0137384_10093263	All Organisms → cellular organisms → Bacteria	2508	Open in IMG/M
3300012361\|Ga0137360_10768588	All Organisms → cellular organisms → Bacteria → Acidobacteria	829	Open in IMG/M
3300012582\|Ga0137358_10212568	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1319	Open in IMG/M
3300012582\|Ga0137358_11086221	All Organisms → cellular organisms → Bacteria → Acidobacteria	511	Open in IMG/M
3300012917\|Ga0137395_10282626	All Organisms → cellular organisms → Bacteria	1172	Open in IMG/M
3300012918\|Ga0137396_10997314	All Organisms → cellular organisms → Bacteria	607	Open in IMG/M
3300012923\|Ga0137359_11104394	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	678	Open in IMG/M
3300012923\|Ga0137359_11669642	All Organisms → cellular organisms → Bacteria → Acidobacteria	524	Open in IMG/M
3300012929\|Ga0137404_10018212	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	5018	Open in IMG/M
3300012929\|Ga0137404_10998512	All Organisms → cellular organisms → Bacteria	766	Open in IMG/M
3300012929\|Ga0137404_11135307	All Organisms → cellular organisms → Bacteria → Acidobacteria	718	Open in IMG/M
3300014200\|Ga0181526_10242322	All Organisms → cellular organisms → Bacteria → Acidobacteria	1150	Open in IMG/M
3300015054\|Ga0137420_1295379	All Organisms → cellular organisms → Bacteria	1498	Open in IMG/M
3300015054\|Ga0137420_1411071	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae	2026	Open in IMG/M
3300015054\|Ga0137420_1485467	All Organisms → cellular organisms → Bacteria → Acidobacteria	1438	Open in IMG/M
3300015167\|Ga0167661_1023729	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Phenylobacterium → unclassified Phenylobacterium → Phenylobacterium sp. J367	1133	Open in IMG/M
3300015241\|Ga0137418_10062523	All Organisms → cellular organisms → Bacteria → Acidobacteria	3405	Open in IMG/M
3300015241\|Ga0137418_11273893	All Organisms → cellular organisms → Bacteria → Acidobacteria	514	Open in IMG/M
3300015245\|Ga0137409_10028594	All Organisms → cellular organisms → Bacteria → Proteobacteria	5427	Open in IMG/M
3300015245\|Ga0137409_10091428	All Organisms → cellular organisms → Bacteria	2831	Open in IMG/M
3300015357\|Ga0134072_10080343	Not Available	967	Open in IMG/M
3300015371\|Ga0132258_13492132	Not Available	1077	Open in IMG/M
3300016270\|Ga0182036_10006706	All Organisms → cellular organisms → Bacteria → Acidobacteria	5876	Open in IMG/M
3300016422\|Ga0182039_11672090	All Organisms → cellular organisms → Bacteria → Acidobacteria	582	Open in IMG/M
3300017927\|Ga0187824_10279156	All Organisms → cellular organisms → Bacteria	586	Open in IMG/M
3300017995\|Ga0187816_10040761	All Organisms → cellular organisms → Bacteria	1916	Open in IMG/M
3300020579\|Ga0210407_11031496	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	626	Open in IMG/M
3300020579\|Ga0210407_11071288	All Organisms → cellular organisms → Bacteria → Acidobacteria	612	Open in IMG/M
3300020583\|Ga0210401_10047250	All Organisms → cellular organisms → Bacteria → Proteobacteria	4072	Open in IMG/M
3300020583\|Ga0210401_10277779	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1535	Open in IMG/M
3300020583\|Ga0210401_10872221	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	759	Open in IMG/M
3300020583\|Ga0210401_11432351	All Organisms → cellular organisms → Bacteria	548	Open in IMG/M
3300021086\|Ga0179596_10457945	All Organisms → cellular organisms → Bacteria → Acidobacteria	645	Open in IMG/M
3300021086\|Ga0179596_10715453	All Organisms → cellular organisms → Bacteria	507	Open in IMG/M
3300021168\|Ga0210406_10066485	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3110	Open in IMG/M
3300021171\|Ga0210405_10241627	All Organisms → cellular organisms → Bacteria	1429	Open in IMG/M
3300021405\|Ga0210387_10879546	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	789	Open in IMG/M
3300021432\|Ga0210384_11593645	All Organisms → cellular organisms → Bacteria	558	Open in IMG/M
3300021474\|Ga0210390_10076542	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2769	Open in IMG/M
3300021474\|Ga0210390_10184722	All Organisms → cellular organisms → Bacteria	1762	Open in IMG/M
3300021478\|Ga0210402_10589047	All Organisms → cellular organisms → Bacteria → Acidobacteria	1031	Open in IMG/M
3300021559\|Ga0210409_11602735	All Organisms → cellular organisms → Bacteria → Acidobacteria	527	Open in IMG/M
3300022529\|Ga0242668_1092221	All Organisms → cellular organisms → Bacteria	604	Open in IMG/M
3300022557\|Ga0212123_10772795	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	581	Open in IMG/M
3300024178\|Ga0247694_1041847	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella rosea	518	Open in IMG/M
3300025915\|Ga0207693_10693191	All Organisms → cellular organisms → Bacteria	789	Open in IMG/M
3300026300\|Ga0209027_1035283	All Organisms → cellular organisms → Bacteria → Acidobacteria	1889	Open in IMG/M
3300026310\|Ga0209239_1013393	All Organisms → cellular organisms → Bacteria	4271	Open in IMG/M
3300026317\|Ga0209154_1127402	All Organisms → cellular organisms → Bacteria	1074	Open in IMG/M
3300026320\|Ga0209131_1079056	All Organisms → cellular organisms → Bacteria	1777	Open in IMG/M
3300026320\|Ga0209131_1102825	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1504	Open in IMG/M
3300026323\|Ga0209472_1109249	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1096	Open in IMG/M
3300026323\|Ga0209472_1185017	All Organisms → cellular organisms → Bacteria	737	Open in IMG/M
3300026515\|Ga0257158_1067103	All Organisms → cellular organisms → Bacteria	681	Open in IMG/M
3300026529\|Ga0209806_1111674	Not Available	1136	Open in IMG/M
3300026537\|Ga0209157_1043205	All Organisms → cellular organisms → Bacteria	2462	Open in IMG/M
3300026540\|Ga0209376_1409760	All Organisms → cellular organisms → Bacteria → Acidobacteria	507	Open in IMG/M
3300026550\|Ga0209474_10187056	All Organisms → cellular organisms → Bacteria	1328	Open in IMG/M
3300026557\|Ga0179587_10942002	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	569	Open in IMG/M
3300027603\|Ga0209331_1106388	All Organisms → cellular organisms → Bacteria	684	Open in IMG/M
3300027633\|Ga0208988_1013265	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2081	Open in IMG/M
3300027701\|Ga0209447_10007658	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3182	Open in IMG/M
3300027875\|Ga0209283_10791818	All Organisms → cellular organisms → Bacteria → Acidobacteria	584	Open in IMG/M
3300027879\|Ga0209169_10250993	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	927	Open in IMG/M
3300027903\|Ga0209488_10929098	All Organisms → cellular organisms → Bacteria → Acidobacteria	608	Open in IMG/M
3300028536\|Ga0137415_10427599	All Organisms → cellular organisms → Bacteria → Acidobacteria	1129	Open in IMG/M
3300031231\|Ga0170824_126670398	All Organisms → cellular organisms → Bacteria → Acidobacteria	1226	Open in IMG/M
3300031446\|Ga0170820_11369073	All Organisms → cellular organisms → Bacteria	525	Open in IMG/M
3300031708\|Ga0310686_116539823	All Organisms → cellular organisms → Bacteria → Acidobacteria	2088	Open in IMG/M
3300031754\|Ga0307475_10085960	All Organisms → cellular organisms → Bacteria	2433	Open in IMG/M
3300031835\|Ga0318517_10127490	All Organisms → cellular organisms → Bacteria	1129	Open in IMG/M
3300031846\|Ga0318512_10329794	All Organisms → cellular organisms → Bacteria → Acidobacteria	761	Open in IMG/M
3300032010\|Ga0318569_10343481	All Organisms → cellular organisms → Bacteria → Acidobacteria	695	Open in IMG/M
3300032042\|Ga0318545_10094776	All Organisms → cellular organisms → Bacteria	1042	Open in IMG/M
3300032059\|Ga0318533_10002055	All Organisms → cellular organisms → Bacteria	10395	Open in IMG/M
3300032076\|Ga0306924_10614404	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	1229	Open in IMG/M
3300032180\|Ga0307471_100441656	All Organisms → cellular organisms → Bacteria	1438	Open in IMG/M
3300032828\|Ga0335080_10143195	All Organisms → cellular organisms → Bacteria	2648	Open in IMG/M
3300034163\|Ga0370515_0277523	All Organisms → cellular organisms → Bacteria	710	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.18%
Host-Associated	Host-Associated	0.82%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	93.44%
Aquatic	Environmental → Aquatic	5.74%
Plants	Host-Associated → Plants	0.82%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	93.44%
Freshwater	Environmental → Aquatic → Freshwater	4.92%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.82%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.82%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	81.15%
Loam	Environmental → Terrestrial → Soil → Loam	9.84%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	4.92%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.46%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.82%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.82%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	43.44%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	23.77%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	13.93%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	9.02%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	3.28%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.64%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.64%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.82%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.82%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.82%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.82%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	32.79%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	18.03%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	8.20%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	5.74%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	4.92%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	4.92%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	2.46%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	2.46%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.46%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	2.46%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	1.64%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.64%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.64%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.64%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.64%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.82%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.82%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.82%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.82%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.82%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	0.82%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.82%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.82%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001546	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300002907	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm	Environmental	Open in IMG/M
3300002917	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_100cm	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005451	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130	Environmental	Open in IMG/M
3300005529	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300005944	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 2 DNA2013-048	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010321	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09212015	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300014200	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_30_metaG	Environmental	Open in IMG/M
3300015054	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015167	Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-11b, vegetated hydrological feature)	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015357	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_0_1 metaG	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300017927	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_4	Environmental	Open in IMG/M
3300017995	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021086	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300022529	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300024178	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK35	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026300	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026310	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm (SPAdes)	Environmental	Open in IMG/M
3300026317	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121 (SPAdes)	Environmental	Open in IMG/M
3300026320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm (SPAdes)	Environmental	Open in IMG/M
3300026323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130 (SPAdes)	Environmental	Open in IMG/M
3300026515	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-03-A	Environmental	Open in IMG/M
3300026529	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152 (SPAdes)	Environmental	Open in IMG/M
3300026537	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135 (SPAdes)	Environmental	Open in IMG/M
3300026540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134 (SPAdes)	Environmental	Open in IMG/M
3300026550	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145 (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027603	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027633	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M1 (SPAdes)	Environmental	Open in IMG/M
3300027701	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027875	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027879	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031835	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300032010	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22	Environmental	Open in IMG/M
3300032042	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f26	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300034163	Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_04D_14	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12659J15293_101095061	3300001546	Forest Soil	FMVGGILPGTYTLIAVEDGWGFAWMKEGVLEKYLAKGQQVNIGVMMNNKVVLPEALEAQPK*
JGI12635J15846_100909061	3300001593	Forest Soil	LRGVIPGSYTIFAVEDAWGFQWMQPGVLGRYVQHGQNLTIGELMKGSVHLPDPVEVQPR*
JGI12635J15846_105158223	3300001593	Forest Soil	VLRGVIPGSYTIVAVEDAWGFQWMQPGVLGRYVQHGQNLTIGELMKGSVHLPDPVEVQPR
JGI12053J15887_106531442	3300001661	Forest Soil	FALPDVVPGSYTVVAVEDAWGFDWSKPTLLARYAEHGQTLMIGELIQGAVHLPEPVEVQPR*
JGI25613J43889_101382041	3300002907	Grasslands Soil	VEDAWGFQWMQPGVLARYVQRGQDLTIGELMKGSVHLPDPVEVQPR*
JGI25613J43889_101877152	3300002907	Grasslands Soil	AVEDAWGFEWLQPGVLARYVQHGQNLTIGPLMRGTVHLPDPVEVQPH*
JGI25616J43925_102169232	3300002917	Grasslands Soil	AVEDAWGFDWSKPTLLARYAEHGQTLIIGELIQGAVHLPEPVEVQPR*
Ga0062387_1003561421	3300004091	Bog Forest Soil	GTFHVVDVIPGSYTVVAVEDAWGFEWRKPEVLARYVLHGQSLTVGELMRGSVHLPEAVEVQPR*
Ga0062389_1042478511	3300004092	Bog Forest Soil	TIVAVEDAWGFEWLKPGVLSRYAEHGQSLDIGPLMQRTVVLPDAVEVQGR*
Ga0066679_102850232	3300005176	Soil	VPGSYTVIAVEDAWGFDWSKPTLLARYAEHGQALAIGELIQGAVHLPEPVEVQPR*
Ga0066685_101553081	3300005180	Soil	GVIPGSYTIVAVEDAWGFQWMQPGVLARYVLHGQDLTIGELMKGSVHLPDPVEVQPR*
Ga0066388_1033288642	3300005332	Tropical Forest Soil	LDGSFLIRDVVPGTYTIVAVQDAWDFPWLEPGVLSRYVLHGQDLTIGEALRGALHLPNPVEVQPR*
Ga0066388_1055008071	3300005332	Tropical Forest Soil	RAVVPGTYTIVAVENAWEFDWMTARVLARYVQHGQNVTIGEKMMGMLHLPEPVEVQGR*
Ga0066681_100893791	3300005451	Soil	YTIVAVEDAWGFQWMQPGVLARYVLHGQDLTIGELMKGSVHLPDPVEVQPR*
Ga0070741_101966181	3300005529	Surface Soil	IAVEDAWGFEWLKPGILSRYLPHGQTLNIGELMHRTVYLPEPLEAQPR*
Ga0070731_104002702	3300005538	Surface Soil	GKYTLIAVQDAWGTAWLKQGVLEKYLAHGQELTIGELMNGTVTLPDALEAQAR*
Ga0070731_108941242	3300005538	Surface Soil	GAYTIVAIEDAWGLDWLQPNALARYVQHGQNISIGDFMTGTLHLPNPIEVQPH*
Ga0070766_104675432	3300005921	Soil	MPGVLPGVYTIIAVEDAWDFPWMQPGALAKYVQHGQNLTIGELMQGSVELPDPVEVQLR*
Ga0066788_100694312	3300005944	Soil	DMDGSFTVGGILPGSYTLIAVEDAWDFPWMQKGALERYLQHGQSLTIGELMNGTVHLPDAVEVQPR*
Ga0070765_1011303842	3300006176	Soil	LVAVEDAWGFEWMKPGVLARYISHGQTVTIGELMRGSVKLPDAEEVQPR*
Ga0099793_100864991	3300007258	Vadose Zone Soil	AVEDAWGFQWMQPGVLGRYVQHGQNLTIGELMKGSVYLPDPVEVQAR*
Ga0099793_105793881	3300007258	Vadose Zone Soil	IFAVEDAWGFQWMQPGVLGRYAQHGQNLTIGELMKGSVHLPDPVEVQPR*
Ga0099794_106223651	3300007265	Vadose Zone Soil	DFDGSFVLHSVIPGSYTIVAVEDAWGFQWMQPGVLARYVQRGQDLTIGELMKGSVHLPDPVEVQPR*
Ga0099795_105422442	3300007788	Vadose Zone Soil	LPDVVPGSYTVVAVEDAWGFDWSKPTLLARYAEHGQTLTIGELIQGAVHLPEPVEVQPR*
Ga0099829_107235331	3300009038	Vadose Zone Soil	AWGFQWMQPGVLARYVQHGQNLTIGELMKGSVHLPDPVEVQPR*
Ga0099830_115876481	3300009088	Vadose Zone Soil	SYTIFAVEDAWGFQWMQPGVLERYVQHGQNLTIGELMKGSVHLPDPVEVQPR*
Ga0099828_104274102	3300009089	Vadose Zone Soil	AVEDAWGFQWMQPGVLGRYVQHGQNLTIGELMKGSVRLPDPVEVQPR*
Ga0099792_104316652	3300009143	Vadose Zone Soil	LHGVIPGSYTIVAVEDAWGFQWMQPGVLGRYVQHGQNLTIGELMKGSVHLPDPVEVQAR*
Ga0099792_107484892	3300009143	Vadose Zone Soil	PGSYTIVAVEDAWGFQWMQPGVLGRYVQHGQNLTIGELMKGSVHLPDPVEVQPR*
Ga0126384_102141741	3300010046	Tropical Forest Soil	DGSFTLPGVIPGSYTIVAVDDAWGFDWLKAGVLARYVQHGQKVIVSEKTRGTLHLPDLVELQGR*
Ga0126373_120767721	3300010048	Tropical Forest Soil	AVVPGTYTIVAVENAWEFDWLTARVLARYVQHGQNVIIGEKMRGMLHLPEPVEVQGR*
Ga0134067_100053381	3300010321	Grasslands Soil	IVAVEDAWGSAWLQPSVLLRYVEHGQNVTIGELTEGSMHLPDPVEVQTR*
Ga0126370_109304651	3300010358	Tropical Forest Soil	GSFLIRDVVPGTYTIVAVQDAWDFPWLEPGVLSRYVLHGQDLTIGEALRGALHLPNPVEVQPR*
Ga0126379_117328391	3300010366	Tropical Forest Soil	TIVAVENAWGFGWLQPSVLSRYVQHGQNVTIGELMQGSVYLPEPIEVQPR*
Ga0126381_1000239901	3300010376	Tropical Forest Soil	VENAWGFEWLQPSVLSRYVQHGQNVTIGEMMMGSVHLPNPVEVQPR*
Ga0126381_1035829752	3300010376	Tropical Forest Soil	VLPGVIPGTYTIVAVEDAWGFEWLKAGVLARYVQHGQKVIIGEKMRGTLHLPDAVEVQAR
Ga0137388_106089612	3300012189	Vadose Zone Soil	TIVAVEDAWGFQWMQAGVLGRYVQHGQNLTIGELMKGSVHLPDPVEVQPR*
Ga0137364_114759861	3300012198	Vadose Zone Soil	EDAWGFQWMQPGVLGRYVQHGQNLTIGELMKGSVYLPDPVEVQAR*
Ga0137363_116065602	3300012202	Vadose Zone Soil	SVAYVVPGTYTIVAVEDAWGFEWLKPGVLSRYAQHGQELTIGPLMRGTVHLPDPVEVQGK
Ga0137399_115023751	3300012203	Vadose Zone Soil	VIPGSYTIVAVEDAWGFDWLQPGVLARYVQHGQNLIIGERMQGTVHLPDPVEVQPH*
Ga0137362_102399211	3300012205	Vadose Zone Soil	GSYTIVAVEDAWGFQWMQPGVLARYVQHGQDLTIGELMKGSVHLPDPVEVQPR*
Ga0137362_102984292	3300012205	Vadose Zone Soil	PDVVPGSYTVVAVEDAWGFDWSKPTLLARYAEHGQALTIGELIQGVVHLPEPVEVQPR*
Ga0137381_117812491	3300012207	Vadose Zone Soil	DGTFSVAFIQPGTYKIAAVEDAWEVDWLQPGVLSRYAQHAQELTSGPLMRGTVHLPEPVEVQPK*
Ga0137384_100932631	3300012357	Vadose Zone Soil	TIVAVEDAWGSAWLQPSVLLRYVEHGQNVTIGELTEGSMHLPDPVEVQTR*
Ga0137360_107685882	3300012361	Vadose Zone Soil	AWVFQWMQPGVLERYARHGQNLTIGELMKGSVHLPDPVEVQPR*
Ga0137358_102125681	3300012582	Vadose Zone Soil	VIPGSYTIVAVEDAWGFEWLQPGVLARYVQHGQNLTIGPLMRGTVHLPEPVEVQPH*
Ga0137358_110862212	3300012582	Vadose Zone Soil	GSFVLRGVIPGSYTIVAVEDAWGFQWMQPGVLGRYVQHGQNLTIGELMKGSVHLPDPVEVQPR*
Ga0137395_102826262	3300012917	Vadose Zone Soil	FALPDVVPGSYTVVAVEDAWGFDWSKPTLLARYAEHGQALTIGELIQGAVHLPEPVEVQPR*
Ga0137396_109973142	3300012918	Vadose Zone Soil	GFQWMQPGVLERYARHGQNLTIGELMKGSVHLPDPVEVQPR*
Ga0137359_111043942	3300012923	Vadose Zone Soil	VPGSYTVVAVEDAWGFDWSKPTLLARYAEHGQALTIGQLIQGAVHLPEPVEVQPR*
Ga0137359_116696421	3300012923	Vadose Zone Soil	RDQSDLDGSFVLRGVIPGSYTIFAVEDAWGFQWMQPGVLERYARHGQNLTIGELMKGSVHLPDPVEVQPR*
Ga0137404_100182126	3300012929	Vadose Zone Soil	GSFTLGGILPGSYTLIAVEDAWDFPWMQKGALERYLQHGQNLTIGELMNGAVHLPDPVEVQPR*
Ga0137404_109985121	3300012929	Vadose Zone Soil	PDVVPGSYTVVAVEDAWGFDWSKPTLLARYAERGQALTIGELIHGAVHLPEPVEVQPR*
Ga0137404_111353071	3300012929	Vadose Zone Soil	GSFTLGGILPGSYTLIAVEDAWDFPWMQKGALERYLQHGQNITIGELMNGAVHLPDPVEVQPR*
Ga0181526_102423221	3300014200	Bog	TFFLQVVVPGTYTIVAVEDAWGFDWLKAGVLAKYAQHGQQVNIGDRMRGVLRLPEAVAAQMK*
Ga0137420_12953793	3300015054	Vadose Zone Soil	SFVLRGVIPGTYTIYAVEDSWGFQWMQPGVLARYVQHGQNLTIGELMKGSVHLPDPVEVQPR*
Ga0137420_14110712	3300015054	Vadose Zone Soil	VVAVEDAWGFDWSKPTLLARYAEHGQALTIGQLIQGAVHLPEPVEVQPR*
Ga0137420_14854672	3300015054	Vadose Zone Soil	VIPGSYTIVAVEDAWGFDWQQPGVLARYVQHGQNLIIGERLQGAVHLPDPVEVQAH*
Ga0167661_10237292	3300015167	Glacier Forefield Soil	VIPGTYTLVAVEDAWDFACNQPEVLNRYAQHGQNLTVGALMTNTVHLPEPAQVQPR*
Ga0137418_100625233	3300015241	Vadose Zone Soil	VIPGSYTIVAVEDAWGFDWLQPGVLARYVQYGQNVIIGERMQGTVHLPDPIEVQPH*
Ga0137418_112738931	3300015241	Vadose Zone Soil	DLDGSFVLRGVIPGSYTIFAVEDAWGFQWMQPGVLERYARHGQNLTIGELMKGSVHLPDPVEVQPR*
Ga0137409_100285941	3300015245	Vadose Zone Soil	VAVEDAWGFDWSKPTLLARYAEHGQELTIGELIQGAVHLPEPVEVQPR*
Ga0137409_100914284	3300015245	Vadose Zone Soil	VAVEDAWGFDWSKPTLLARYAEHGQALTIGELIQGAVHLPEPVEVQPR*
Ga0134072_100803432	3300015357	Grasslands Soil	RDQSDLDGSFVLRGVIPGAYTIVAVEDAWGSAWLQPSVLLRYVEHGQNVTIGELTEGSMHLPDPVEVQTR*
Ga0132258_134921321	3300015371	Arabidopsis Rhizosphere	WLEPGALARYVLQGQDLTIGEPVGGALHLPNPVEVQPR*
Ga0182036_100067065	3300016270	Soil	FVLRGVIPGTYTVVAVEDAWGFSWLQPSVLSRYVQHGQKVTIGELMEGPMHLPDRVEVQT
Ga0182039_116720901	3300016422	Soil	VYTIVAIENAWDFEWLQPSVLSRYVQHGQNVTIGELMQGSVHLPDPVAVQPR
Ga0187824_102791562	3300017927	Freshwater Sediment	EDAWGLDWMQPSVLARYVQHGQNISVGDFMNGTLHLPDPIEVQQH
Ga0187816_100407614	3300017995	Freshwater Sediment	PGTYTVVAVDDAWGFEWLKAGVLARYIQHGQEVIIGEKMRGTLHLPEPVEVQGK
Ga0210407_110314961	3300020579	Soil	PGSYTIVAVEDAWGFEWLQPGVLARYVQHGQNLTVGPLMRGTVHLPDPVEVQPH
Ga0210407_110712881	3300020579	Soil	LVAVEDAWGFPWPQPGALSRYVKRGQDLTIGELMKGSVHLPEPVEVQPR
Ga0210401_100472505	3300020583	Soil	YTIVAIEDAWGFAWLQPGVLARYLLNGQNLNITEAMKGTIYLPDPVQVQPR
Ga0210401_102777791	3300020583	Soil	PGKYTVVAVEDAWGFEWLKAAVLARYVQHGKNVIIGESMRGTVHLPDTVEVQSR
Ga0210401_108722212	3300020583	Soil	DAWGFAWLQPGVLARYLLKGQNLTITESMKGTIYLPDPVRVQPR
Ga0210401_114323512	3300020583	Soil	TFLLQGVIPGSYTIVAVEDAWGLDWLQSNVLARYVQHGQNLTIGELMQGSVHLPDPVEVQPH
Ga0179596_104579451	3300021086	Vadose Zone Soil	YTLIAVEDAWDFPWMQKGALERYLQHGQNLTIGELMNGAVHLPDPVEVQPR
Ga0179596_107154531	3300021086	Vadose Zone Soil	SFAVPDVVPGSYTVVAVEDAWGFDWSKPTLLARYAEHGQALTIGELIQGAVHLPEPVEVQPR
Ga0210406_100664851	3300021168	Soil	GVIPGSYTIVAVEDAWGFEWLRPGVLARYVQHGQNLTVGPLMRGTVHLPDPVEVQPH
Ga0210405_102416273	3300021171	Soil	IPGAYTTVAIEDAWGLDWLQPAVLARYVQHGQNISIGDFMTGTLHLPNPIEVQPH
Ga0210387_108795461	3300021405	Soil	EDAWEFPWMEVGALPRYLQYGQNVTIGELMSGTVLLPDPVEVQPR
Ga0210384_115936451	3300021432	Soil	DGTFVVRDVIPGSYTIVAVEDAWGFAWLQPGVLARYLLKGQNLTITESMKGTIYLPDPVQVQPR
Ga0210390_100765421	3300021474	Soil	TIISVEDAWGFPWMEAGALPRYLQHGQNVTIGELMNGTVLLPDPVEVQPR
Ga0210390_101847221	3300021474	Soil	EDAWGSQWMQPDVLKRYLQHGQNLTIGELMTNTVHLPEPVEVQPH
Ga0210402_105890472	3300021478	Soil	FDGTFLLQGVVPGRYTIVAVEDAWGFGWLKTGVLARYVQHGQQVIVGEKMRGGVRLPEAVEVQGR
Ga0210409_116027352	3300021559	Soil	AVEDAWGLEWLQPSVLARYVQHGQSLSIGDFMNGTVHLPDPIEVQPH
Ga0242668_10922211	3300022529	Soil	AWGFPWMEAGALARYLLHGQNLTIGELMNGTVLLPDPVEVQPR
Ga0212123_107727952	3300022557	Iron-Sulfur Acid Spring	EDAWDFPWMQPGSLERYAQHGQNVTIGELMNGAVQLPDPVEVQPR
Ga0247694_10418471	3300024178	Soil	TIVAVEDAWGLEWLQPSVLARYVQHGKNVTVDEMMHGTFHLPDPVEVQPH
Ga0207693_106931912	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	TFHVGGILPGSYTLIAVEDAWGFAWMKQGVLEKYLEHGQNLTIGEMMNGTVVLPDAVEVQPR
Ga0209027_10352833	3300026300	Grasslands Soil	GSFVLRGVIPGSYTIVAVEDAWGFQWMQPGVLGRYLQHGQSLTIGELMKGSVYLPDPVEVQAR
Ga0209239_10133934	3300026310	Grasslands Soil	GSYTIVAVEDAWGFQWMQPGVLGRYVQHGQNLTIGELMKGSVYLPDPVEVQAR
Ga0209154_11274022	3300026317	Soil	GWYTIVAVEDAWGFQWMQPGVLGRYVQHGQNLTIGELMKGSVYLPDPVEVQAR
Ga0209131_10790561	3300026320	Grasslands Soil	VEDAWGFQWMQPGVLARYVQRGQDLTIGELMKGSVHLPDPVEVQPR
Ga0209131_11028253	3300026320	Grasslands Soil	AVEDAWGFEWLQPGVLARYVQHGQNLTIGPLMRGTVHLPDPVEVQPH
Ga0209472_11092491	3300026323	Soil	TIVAVEDAWGFQWMQPGVLARYVLHGQDLTIGELMKGSVHLPDPVEVQPR
Ga0209472_11850171	3300026323	Soil	GSFVLRGVIPGSYTIVAVEDAWGFQWMQPGVLGRYVQHGQNLTIGELMKGSVYLPDPVEVQAR
Ga0257158_10671032	3300026515	Soil	FEWLQPNALARYLRNGQNLTIGQLMEGSVHLPEPVQVQPR
Ga0209806_11116741	3300026529	Soil	SDLDGSFVLRGVIPGAYTIVAVEDAWGSAWLQPSVLLRYVEHGQNVTIGELTEGSMHLPDPVEVQTR
Ga0209157_10432053	3300026537	Soil	LDGSFVLRGVIPGAYTIVAVEDAWGSAWLQPSVLLRYVEHGQNVTIGELTEGSMHLPDPVEVQTR
Ga0209376_14097602	3300026540	Soil	LRGVIPGSYTIVAVEDAWGFQWMQPGVLARYVLHGQDLTIGELMKGSVHLPDPVEVQPR
Ga0209474_101870562	3300026550	Soil	IPGSYTIVAVEDAWGFQWMQPGVLGRYLQHGQSLTIGELMKGSVYLPDPVEVQAR
Ga0179587_109420021	3300026557	Vadose Zone Soil	AVEDAWGFDWSKPTLLARYAEHGQTLTIGQLIEGAVHLPEPVEVQPR
Ga0209331_11063882	3300027603	Forest Soil	TFSVGGVIPGSYTIVAVEDAWGFEWLQPGVLSRYAQHGQQLNIGALMQGSVLLPNPVEVQPR
Ga0208988_10132651	3300027633	Forest Soil	MYRRDQSNSDGSFLLPAVIPGNYTLIAVEDAWGFQWQQPDVLNRYLRHGQNLTIGELMTATVHLPEAVQVQPR
Ga0209447_100076583	3300027701	Bog Forest Soil	MVALVPKDPEAHLEMFRREQSDLDGTFVVRDVIPGSYTIVAVEDAWGFPWLQPGELGRYLLHGQELNITESMKGTVYLPDPVQVQPR
Ga0209283_107918181	3300027875	Vadose Zone Soil	GVIPGSYSIVAVEDAWGFQWMQPGVLGRYVQHGQNLTIGELMKGSVRLPDPVEVQPR
Ga0209169_102509931	3300027879	Soil	AFIQPGTYTIVAVEDAWGMEWMQPGVLSRYAQHGQELTIGPLMRGTVHLPEPVEVQPK
Ga0209488_109290981	3300027903	Vadose Zone Soil	LRGVIPGSYSIVAVEDAWGFQWMQPGVLGRYVQHGQNLTIGELMKGSVRLPDPVEVQPR
Ga0137415_104275991	3300028536	Vadose Zone Soil	IFAVEDAWGFQWMQPGVLGRYVQHGQNLTIGELMKGSVHLPDPVEVQPR
Ga0170824_1266703984	3300031231	Forest Soil	VEDAWGLDWMQPSVLARYVQHGQNISVGEFMNGTLHLPEPIEVQPH
Ga0170820_113690732	3300031446	Forest Soil	VPGTYTIVAVEDAWGFEWLKPGVLSRYVQHGQELTIGPLMRGAVHLPDPVEVQPK
Ga0310686_1165398231	3300031708	Soil	SYTVVAVEDAWGFEWLKPEVLARYVQHGQMLTVGELMKGSVHLPDPVEVQPR
Ga0307475_100859601	3300031754	Hardwood Forest Soil	MDGSLAFRSVLPGSYTIIAVEDAWEFPWMEPGALNRYLQHGQNLTIGELMNGTVLLPDPVEVQPR
Ga0318517_101274902	3300031835	Soil	DQSDLDGSFVLRGAIPGTYTVVAVEDAWGFSWLQPSVLSRHVQHGQKVTIGELMEGPMHLPDRVEVQTR
Ga0318512_103297941	3300031846	Soil	LDGSFVLRGAIPGTYTVVAVEDAWGFSWLQPSVLSRHVQHGQKVTIGELMEGPMHLPDRVEVQTR
Ga0318569_103434811	3300032010	Soil	VEDAWGFSWLQPSVLSRYVQHGQKVTIGELMEGPMHLPDRVEVQTR
Ga0318545_100947762	3300032042	Soil	AWGFSWLQPSVLSRYVQHGQKVTIGELMEGPMHLPDRVEVQTR
Ga0318533_100020551	3300032059	Soil	DLDGSFVLRGVIPGTYTVVAVEDAWGFSWLQPSVLSRYVQHGQKVTIGELMEGPMHLPDRVEVQTR
Ga0306924_106144041	3300032076	Soil	GVIPGVYTIVAVENAWGFEWLQPSVLSRYVQHGQNVTIGELMQGSVHLPDPVAVQPR
Ga0307471_1004416562	3300032180	Hardwood Forest Soil	LRGVIPGSYTIVAVEDAWGFDWQQPGILARYVQHGQNVIVGERMQGTVHLPDPVEVQPH
Ga0335080_101431952	3300032828	Soil	LLGVVPGTYTLVAVEDAWGFAWMKPGVLARYVQHGQQVIVGEKMRGAVHLPEAVEVQAR
Ga0370515_0277523_2_157	3300034163	Untreated Peat Soil	YTLIAIEDAWDFPWMQPGSLERYAQHGQNLTIGELMNGAVQLPDPVEVQPR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F071431

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences