Basic Information | |
---|---|
Family ID | F070962 |
Family Type | Metagenome |
Number of Sequences | 122 |
Average Sequence Length | 47 residues |
Representative Sequence | MAWTASVMAPRSPYPEGDVTVVLRVTYNTLEAIIRDEFMLTESRVAH |
Number of Associated Samples | 107 |
Number of Associated Scaffolds | 122 |
Quality Assessment | |
---|---|
Transcriptomic Evidence | No |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 42.62 % |
% of genes near scaffold ends (potentially truncated) | 23.77 % |
% of genes from short scaffolds (< 2000 bps) | 81.15 % |
Associated GOLD sequencing projects | 99 |
AlphaFold2 3D model prediction | No |
Hidden Markov Model |
---|
Powered by Skylign |
Most Common Taxonomy | |
---|---|
Group | Bacteria (50.820 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
---|---|
GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (16.393 % of family members) |
Environment Ontology (ENVO) | Unclassified (29.508 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Host-associated → Plant → Plant rhizosphere (49.180 % of family members) |
⦗Top⦘ |
⦗Top⦘ |
Predicted Topology & Secondary Structure | |||||
---|---|---|---|---|---|
Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 34.04% β-sheet: 12.77% Coil/Unstructured: 53.19% | Feature Viewer |
|
|||||
Powered by Feature Viewer |
⦗Top⦘ |
Pfam ID | Name | % Frequency in 122 Family Scaffolds |
---|---|---|
PF13193 | AMP-binding_C | 51.64 |
PF01112 | Asparaginase_2 | 28.69 |
PF01594 | AI-2E_transport | 2.46 |
PF02585 | PIG-L | 1.64 |
PF02771 | Acyl-CoA_dh_N | 1.64 |
PF12681 | Glyoxalase_2 | 1.64 |
PF01553 | Acyltransferase | 1.64 |
PF01209 | Ubie_methyltran | 1.64 |
PF13277 | YmdB | 0.82 |
PF05050 | Methyltransf_21 | 0.82 |
PF00753 | Lactamase_B | 0.82 |
PF00903 | Glyoxalase | 0.82 |
COG ID | Name | Functional Category | % Frequency in 122 Family Scaffolds |
---|---|---|---|
COG1446 | Isoaspartyl peptidase or L-asparaginase, Ntn-hydrolase superfamily | Amino acid transport and metabolism [E] | 28.69 |
COG0628 | Predicted PurR-regulated permease PerM | General function prediction only [R] | 2.46 |
COG1960 | Acyl-CoA dehydrogenase related to the alkylation response protein AidB | Lipid transport and metabolism [I] | 1.64 |
COG2120 | N-acetylglucosaminyl deacetylase, LmbE family | Carbohydrate transport and metabolism [G] | 1.64 |
COG2226 | Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG | Coenzyme transport and metabolism [H] | 1.64 |
COG2227 | 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase | Coenzyme transport and metabolism [H] | 1.64 |
⦗Top⦘ |
Name | Rank | Taxonomy | Distribution |
All Organisms | root | All Organisms | 50.82 % |
Unclassified | root | N/A | 49.18 % |
Visualization |
---|
Powered by ApexCharts |
⦗Top⦘ |
Habitat | Taxonomy | Distribution |
Vadose Zone Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil | 16.39% |
Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil | 9.84% |
Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere | 9.84% |
Groundwater Sediment | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment | 9.02% |
Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 6.56% |
Grasslands Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil | 6.56% |
Forest Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil | 4.92% |
Populus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere | 4.92% |
Miscanthus Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere | 4.10% |
Groundwater Sediment | Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment | 2.46% |
Terrestrial Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil | 2.46% |
Grasslands Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil | 2.46% |
Groundwater Sand | Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand | 2.46% |
Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil | 1.64% |
Sediment | Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment | 1.64% |
Miscanthus Rhizosphere | Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere | 1.64% |
Corn Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere | 1.64% |
Corn Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere | 1.64% |
Soil | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil | 0.82% |
Groundwater Sediment | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment | 0.82% |
Switchgrass Rhizosphere | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere | 0.82% |
Agricultural Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil | 0.82% |
Corn Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere | 0.82% |
Switchgrass Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere | 0.82% |
Arabidopsis Rhizosphere | Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere | 0.82% |
Arabidopsis Thaliana Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere | 0.82% |
Corn, Switchgrass And Miscanthus Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere | 0.82% |
Miscanthus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere | 0.82% |
Miscanthus Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere | 0.82% |
Corn Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere | 0.82% |
Visualization |
---|
Powered by ApexCharts |
Taxon OID | Sample Name | Habitat Type | IMG/M Link |
---|---|---|---|
2067725003 | Soil microbial communities from Great Prairies - Wisconsin, Switchgrass soil | Environmental | Open in IMG/M |
3300000956 | Soil microbial communities from Great Prairies - Kansas, Native Prairie soil | Environmental | Open in IMG/M |
3300001661 | Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly) | Environmental | Open in IMG/M |
3300002886 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cm | Environmental | Open in IMG/M |
3300004157 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2 | Environmental | Open in IMG/M |
3300005172 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132 | Environmental | Open in IMG/M |
3300005180 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134 | Environmental | Open in IMG/M |
3300005181 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127 | Environmental | Open in IMG/M |
3300005293 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 | Host-Associated | Open in IMG/M |
3300005295 | Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 | Environmental | Open in IMG/M |
3300005328 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG | Host-Associated | Open in IMG/M |
3300005334 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 | Host-Associated | Open in IMG/M |
3300005336 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG | Environmental | Open in IMG/M |
3300005345 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG | Environmental | Open in IMG/M |
3300005444 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG | Environmental | Open in IMG/M |
3300005467 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG | Environmental | Open in IMG/M |
3300005468 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG | Environmental | Open in IMG/M |
3300005471 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG | Environmental | Open in IMG/M |
3300005545 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG | Environmental | Open in IMG/M |
3300005546 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG | Environmental | Open in IMG/M |
3300005555 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141 | Environmental | Open in IMG/M |
3300005558 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147 | Environmental | Open in IMG/M |
3300005615 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG | Environmental | Open in IMG/M |
3300005718 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 | Host-Associated | Open in IMG/M |
3300006846 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 | Host-Associated | Open in IMG/M |
3300006853 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4 | Host-Associated | Open in IMG/M |
3300006881 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 | Host-Associated | Open in IMG/M |
3300007258 | Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3 | Environmental | Open in IMG/M |
3300009012 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159 | Environmental | Open in IMG/M |
3300009088 | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG | Environmental | Open in IMG/M |
3300009090 | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG | Environmental | Open in IMG/M |
3300009094 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) | Host-Associated | Open in IMG/M |
3300009137 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158 | Environmental | Open in IMG/M |
3300009147 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) | Host-Associated | Open in IMG/M |
3300009156 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2) | Host-Associated | Open in IMG/M |
3300009817 | Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_10_20 | Environmental | Open in IMG/M |
3300009823 | Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_40_50 | Environmental | Open in IMG/M |
3300009837 | Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_20_30 | Environmental | Open in IMG/M |
3300010333 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaG | Environmental | Open in IMG/M |
3300010399 | Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3 | Environmental | Open in IMG/M |
3300010400 | Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2 | Environmental | Open in IMG/M |
3300010403 | Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3 | Environmental | Open in IMG/M |
3300011406 | Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT539_2 | Environmental | Open in IMG/M |
3300012199 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG | Environmental | Open in IMG/M |
3300012201 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG | Environmental | Open in IMG/M |
3300012202 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG | Environmental | Open in IMG/M |
3300012203 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG | Environmental | Open in IMG/M |
3300012204 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG | Environmental | Open in IMG/M |
3300012207 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG | Environmental | Open in IMG/M |
3300012351 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG | Environmental | Open in IMG/M |
3300012355 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG | Environmental | Open in IMG/M |
3300012360 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG | Environmental | Open in IMG/M |
3300012685 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG | Environmental | Open in IMG/M |
3300012925 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly) | Environmental | Open in IMG/M |
3300013100 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG | Host-Associated | Open in IMG/M |
3300013102 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG | Host-Associated | Open in IMG/M |
3300014745 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG | Host-Associated | Open in IMG/M |
3300015241 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly) | Environmental | Open in IMG/M |
3300015358 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_5_24_1 metaG | Environmental | Open in IMG/M |
3300015371 | Combined assembly of cpr5 and col0 rhizosphere and soil | Host-Associated | Open in IMG/M |
3300017656 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_11112015 | Environmental | Open in IMG/M |
3300017997 | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_coex | Environmental | Open in IMG/M |
3300018028 | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex | Environmental | Open in IMG/M |
3300018031 | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b1 | Environmental | Open in IMG/M |
3300018054 | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1 | Environmental | Open in IMG/M |
3300018071 | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_b1 | Environmental | Open in IMG/M |
3300018077 | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b1 | Environmental | Open in IMG/M |
3300018081 | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1 | Environmental | Open in IMG/M |
3300018082 | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b2 | Environmental | Open in IMG/M |
3300018429 | Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T | Environmental | Open in IMG/M |
3300018433 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116 | Environmental | Open in IMG/M |
3300018468 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111 | Environmental | Open in IMG/M |
3300018482 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118 | Environmental | Open in IMG/M |
3300019377 | Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T | Environmental | Open in IMG/M |
3300019878 | Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2m2 | Environmental | Open in IMG/M |
3300021078 | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_coex redo | Environmental | Open in IMG/M |
3300021080 | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_coex redo | Environmental | Open in IMG/M |
3300022756 | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1 | Environmental | Open in IMG/M |
3300025885 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes) | Environmental | Open in IMG/M |
3300025901 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) | Host-Associated | Open in IMG/M |
3300025910 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) | Environmental | Open in IMG/M |
3300025918 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) | Environmental | Open in IMG/M |
3300025922 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) | Environmental | Open in IMG/M |
3300025932 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
3300025938 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) | Host-Associated | Open in IMG/M |
3300025942 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) | Host-Associated | Open in IMG/M |
3300025949 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) | Host-Associated | Open in IMG/M |
3300026142 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) | Host-Associated | Open in IMG/M |
3300026285 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cm (SPAdes) | Environmental | Open in IMG/M |
3300026324 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125 (SPAdes) | Environmental | Open in IMG/M |
3300026334 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141 (SPAdes) | Environmental | Open in IMG/M |
3300026342 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146 (SPAdes) | Environmental | Open in IMG/M |
3300026540 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134 (SPAdes) | Environmental | Open in IMG/M |
3300026944 | Soil microbial communities from Kellog Biological Station, Michigan, USA - Nitrogen cycling UWRJ-G01K2-12 (SPAdes) | Environmental | Open in IMG/M |
3300027181 | Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM2_M1 (SPAdes) | Environmental | Open in IMG/M |
3300027546 | Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M3 (SPAdes) | Environmental | Open in IMG/M |
3300027552 | Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 S AM (SPAdes) | Host-Associated | Open in IMG/M |
3300027637 | Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200 (SPAdes) | Environmental | Open in IMG/M |
3300027645 | Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2 (SPAdes) | Environmental | Open in IMG/M |
3300027678 | Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M3 (SPAdes) | Environmental | Open in IMG/M |
3300027846 | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes) | Environmental | Open in IMG/M |
3300028784 | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121 | Environmental | Open in IMG/M |
3300028824 | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_197 | Environmental | Open in IMG/M |
3300028881 | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116 | Environmental | Open in IMG/M |
3300031965 | Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT100D185 | Environmental | Open in IMG/M |
3300034164 | Sediment microbial communities from East River floodplain, Colorado, United States - 14_s17 | Environmental | Open in IMG/M |
3300034773 | Sediment microbial communities from East River floodplain, Colorado, United States - 4_s17 | Environmental | Open in IMG/M |
Geographical Distribution | |
---|---|
Zoom: | Powered by OpenStreetMap |
⦗Top⦘ |
Protein ID | Sample Taxon ID | Habitat | Sequence |
GPWSG_03373070 | 2067725003 | Soil | MAWTASVMAPRSPYPEGDVTVVLRVTYNTLEAIIRDEFMLTESRIAH |
JGI10216J12902_1188110702 | 3300000956 | Soil | MASRSPYPEGDVTVVLRVTYNTLDAIIRDELMTTESRVTH* |
JGI12053J15887_100318443 | 3300001661 | Forest Soil | MSEPSSPYPEGXMTVVLRVTYNTLESIIQDEFMLTESRVSN* |
JGI12053J15887_104681262 | 3300001661 | Forest Soil | MAWTARMSEPSSPYPEGEMTVLLRVTYNTLESIIRDEFMLTESRVSN* |
JGI25612J43240_10621871 | 3300002886 | Grasslands Soil | MAWTASVMAPRSPYPEGDVTVVLRVTYNTLESIIRDEFMVTESRVAH* |
Ga0062590_1019072711 | 3300004157 | Soil | MAWTANVFAPRSPYPEGDVTVVLRVTYNTLEAIIRDEFMLTESRVTH* |
Ga0066683_100265833 | 3300005172 | Soil | MVMAPQSPHPEGDVTVVLRVTYNTLEAIIRDEFMLTESRVAH* |
Ga0066683_103428132 | 3300005172 | Soil | MVMAPQSPHPEGDVTVVLRVTYNTLEAIIRDEFMLTESRVSH* |
Ga0066685_101090092 | 3300005180 | Soil | MVMAPQSPHPEGDVTVVLRVTYNTFEAIIRDEFMLTESRVSH* |
Ga0066678_103371442 | 3300005181 | Soil | MVMAPQSPHPEGDVTVVLRVTYNTFEAIIRDEFILTESRVSH* |
Ga0065715_100189772 | 3300005293 | Miscanthus Rhizosphere | MAWTASVMAPRSPYPEGDVTVVLRITYNTLEAIIRDEFMVTESRVAH* |
Ga0065715_101156161 | 3300005293 | Miscanthus Rhizosphere | MAWTANVFAPRSPHPEGDVTVVLRVTYNTLEAIIRDEFMLTESRVAH* |
Ga0065707_104398271 | 3300005295 | Switchgrass Rhizosphere | MAWTANIFAPRSPHPEGDVTVVLRVTYNTLEAIIRDEFMLTESRIAH* |
Ga0070676_102771362 | 3300005328 | Miscanthus Rhizosphere | KVTHMLNASPMAWTANVFAPRSPHPEGDVTVVLRVTYNTLEAIIRDEFMLTESRVTH* |
Ga0068869_1011460242 | 3300005334 | Miscanthus Rhizosphere | MAPRSHYPEGDVTVVLRVTYNTLEAIIRDEFMLTESRVTH* |
Ga0070680_1003831082 | 3300005336 | Corn Rhizosphere | MAPRSPYPEGDVTVVLRITYNTLEAIIRDEFMVTESRVAH* |
Ga0070692_105425722 | 3300005345 | Corn, Switchgrass And Miscanthus Rhizosphere | MAWTASVMAPRSPYPEGDVTVVLRVTYNTLEAIIRDEFMVTESRIAH* |
Ga0070694_1002940641 | 3300005444 | Corn, Switchgrass And Miscanthus Rhizosphere | MLNASPMAWTANVFAPRSPHPEGDVTVVLRVTYNTLEAIIRDEFM |
Ga0070706_1010040811 | 3300005467 | Corn, Switchgrass And Miscanthus Rhizosphere | AMVMAPQSPHPEGDVTVVLRVTYNTLEAIIRDEFMLTESRVSH* |
Ga0070706_1020302801 | 3300005467 | Corn, Switchgrass And Miscanthus Rhizosphere | MAWTASVMAPRSPYPEGDVTVMLRVTYNTLEAIIRDEFMVTESRVAH* |
Ga0070707_1001328014 | 3300005468 | Corn, Switchgrass And Miscanthus Rhizosphere | MAWTAMVMAPQSPHPEGDVTVVLRVTYNTLEAIIRDEFMLTESRVSH |
Ga0070698_1000571994 | 3300005471 | Corn, Switchgrass And Miscanthus Rhizosphere | MAWTANVFAPRSPHPEGDVTVVLRVTYNTLEAIIRDEFMVTESRVAH* |
Ga0070695_1006272402 | 3300005545 | Corn, Switchgrass And Miscanthus Rhizosphere | MAWTASVMAPRSPYPEGDVTVVLRVTYNTLEAIIRDEFMVTESRVAH* |
Ga0070696_1004750451 | 3300005546 | Corn, Switchgrass And Miscanthus Rhizosphere | MAWTASVMAPRSHYPEGDVTVVLRVTYNTLEAIIRDEFMVTESRVAH* |
Ga0066692_100240272 | 3300005555 | Soil | MYTATPMAWTAMVMAPQSPHPEGDVTVVLRVTYNTFEAIIRDEFMLTESRVSH* |
Ga0066698_101213232 | 3300005558 | Soil | PHPEGDVTVVLRVTYNTLEAIIRDEFMLTESRVAH* |
Ga0070702_1002643482 | 3300005615 | Corn, Switchgrass And Miscanthus Rhizosphere | MAWTANVFAPRSPHPEGDVTVVLRVTYNTLEAIIRDEFMLTESRVTH* |
Ga0068866_111333502 | 3300005718 | Miscanthus Rhizosphere | MAWTASVMAPRSPYPEGDVTVVLRITYNTLEAIIRDEFMVTESRIAH* |
Ga0075430_1004824632 | 3300006846 | Populus Rhizosphere | MLNTYASPMTWTAMVLTPRSPYPEGDVTVIMRVTYNTLEAIILDQFVVTESKVAWH* |
Ga0075420_1019379612 | 3300006853 | Populus Rhizosphere | MVLTPRSPYPEGDVTVIMRVTYNTLEAIILDQFVVTES |
Ga0068865_1021250701 | 3300006881 | Miscanthus Rhizosphere | WTANVFAPRSPHPEGDVTVVLRVTYNTLEAIIRDEFMLTESRVTH* |
Ga0099793_103660271 | 3300007258 | Vadose Zone Soil | MLNASPMAWTALVMAPRSPYPEGDVTVVLRVTYNTLEAIIRDEFMLTESRVAH* |
Ga0066710_1008470832 | 3300009012 | Grasslands Soil | MYAATPMAWTAMVMAPQSPHPEGDVTVVLRVTYNTLEAIIRDEFMLTESRVSH |
Ga0099830_106627722 | 3300009088 | Vadose Zone Soil | MYTATPMAWTAMVIAPQSPHPEGDVTVVLRVTYNTLESIIRDEFMLTESRVSH* |
Ga0099827_100188814 | 3300009090 | Vadose Zone Soil | MYTATPMAWTAMVMAPQSPHPEGDVTVVLRVTYNTLEAIIRDEFMLTESRVSH* |
Ga0111539_109658302 | 3300009094 | Populus Rhizosphere | MLNASPMAWTANVFAPRSPHPEGDVTVVLRVTYNTLEAIIRDEFMLSESRVTH* |
Ga0066709_1000063794 | 3300009137 | Grasslands Soil | MYTATPMAWTAMVMAPQSPHPEGDVTVVLRVTYNTLEAIIRDEFMLTESRVAH* |
Ga0114129_100179425 | 3300009147 | Populus Rhizosphere | MAPRSPYPEGDVTVVLRVTYNTLEAIIRDEFMLTESLVAY* |
Ga0114129_108001272 | 3300009147 | Populus Rhizosphere | MLNASPMAWTANVFAPRSPHPEGDVTVVLRVTYNTLEAIIRDEFMLTESRVAH* |
Ga0111538_104697042 | 3300009156 | Populus Rhizosphere | MLNASPMAWTANVFAPRSPHPEGDVTVVLRVTYNTLEAIIRDEFMLTESRVTH* |
Ga0105062_10303972 | 3300009817 | Groundwater Sand | MAWTAMVMAPRSPYPEGDVTVVLRVTYNTLESIIRDELMYTESRVTH* |
Ga0105078_10412022 | 3300009823 | Groundwater Sand | YPEGDVTVVLRVTYNTLESIIRDELMYTESRVTH* |
Ga0105058_10959032 | 3300009837 | Groundwater Sand | MLNTYATPMTWTAMVMAPRSPYPEGDVTVVLRVTYNTLESIIRDELMYTESRVTH* |
Ga0134080_102879692 | 3300010333 | Grasslands Soil | MYTATPMAWTAMVMTPQSPHPEGDVTVVLRVTYNTLEAIIRDEFMLTESRVAH* |
Ga0134127_133771912 | 3300010399 | Terrestrial Soil | MAWTAMVMAPRSPYPEGDVTVVLRVTYNTLESIIRDELMYTESRVPH |
Ga0134122_104124582 | 3300010400 | Terrestrial Soil | MLNASPMAWTANVFAPRSPHPEGDVTVVLRVTYNTLEAIIRDEFMLTESRIAH* |
Ga0134123_110739191 | 3300010403 | Terrestrial Soil | MLNTYASPMAWTASVMAPRSPYPEGDVTVVLRVTYNTLESIIRDEFMVTESRVAH* |
Ga0137454_10334192 | 3300011406 | Soil | MLNASPMAWTALVMAPRSPYPEGDVTVVLRVTYNTLEAIIRDEFVVTESRVAH* |
Ga0137383_102065782 | 3300012199 | Vadose Zone Soil | MYTATPMAWTAMVMAPQSPHPEGDVTVVLRVTYNTLEAIIRDAFMLTESRVSH* |
Ga0137365_106369142 | 3300012201 | Vadose Zone Soil | MYTATPMAWTAMVMAPQSPHPEGDVTVVLRVTYNTLEAITRDEFMLTESRVAH* |
Ga0137363_105359662 | 3300012202 | Vadose Zone Soil | MYTATPMAWTAMVMAPQSPHPEGDVTVVLRVTYNTLESIIRDEFMLTESRVSH* |
Ga0137399_108895672 | 3300012203 | Vadose Zone Soil | MSEPSSPYPEGEMTVVLRVTYNTLESIIQDEFMLTESRVSN* |
Ga0137399_117566171 | 3300012203 | Vadose Zone Soil | MSEPSSPYPEGEMTVVLRVTYNTLESIIRDEFMLTESRVSN* |
Ga0137374_100100386 | 3300012204 | Vadose Zone Soil | MAWTANVFAPCSPHPEGDVTVVLRVTYNTLESIIRDEFMLTESRVAR* |
Ga0137374_103206332 | 3300012204 | Vadose Zone Soil | MWTAAPMAWTAMVLTPRSPYPEGDVTVVVRVTYNTLEAIIRDEFMLTESRVAH* |
Ga0137374_103800932 | 3300012204 | Vadose Zone Soil | MAWTAMVMTPRPPYPEGDVTVVVRVTYNTLEAIIRDEFMLTESRVAV* |
Ga0137381_109304722 | 3300012207 | Vadose Zone Soil | MYTATPMAWTAMVMAPQSPHPEGDVTVVLRVTYNTLEAIIRDAFML |
Ga0137386_107871572 | 3300012351 | Vadose Zone Soil | MYTATPMAWTAMVMAPQSPHPEGDVTVVLRVTYNTLEAIIRDVFMLTESRVSH* |
Ga0137369_100242472 | 3300012355 | Vadose Zone Soil | MLNASPMAWTANVFAPCSPHPEGDVTVVLRVTYNTLESIIRDEFMLTESRVAR* |
Ga0137375_100108626 | 3300012360 | Vadose Zone Soil | MLNASPMAWTANVFAPCSPHPEGDVTVVLRVTYNTLESIIRDEFMLTESRVAH* |
Ga0137397_100134913 | 3300012685 | Vadose Zone Soil | MNASPMAWTASVMAPRSPYPEGDVTVVLRVTYNTLEAIIRDEFMLTESRVAH* |
Ga0137419_104605131 | 3300012925 | Vadose Zone Soil | MNASPMAWTARMSEPSSPYPEGEMTVVLRVTYNTLESIIQDEFMLTESRVSN* |
Ga0137419_112858782 | 3300012925 | Vadose Zone Soil | MNASPMAWTASVMAPRSPYPEGDVTVVLRVTYNTLEAIIRDEFMLT |
Ga0157373_109846403 | 3300013100 | Corn Rhizosphere | MAWTASVMAPRSPYPEGDVTVVLRVTYNTLEAIIRDEFMLTESRVAH* |
Ga0157371_116441351 | 3300013102 | Corn Rhizosphere | MAPRSPYPEGDVTVVLRVTYNTLEAIIRDEFMVTESRIAH* |
Ga0157377_100341252 | 3300014745 | Miscanthus Rhizosphere | MLNASPMVWTANVFAPRSPHPEGDVTVVLRVTYNTLEAIIRDEFMLTESRVTH* |
Ga0137418_102784272 | 3300015241 | Vadose Zone Soil | MNASPMAWTASVMAPRSPYPEGDVTVVLRVTYNTLEAIIRDEFMLTESRVSH* |
Ga0134089_104803592 | 3300015358 | Grasslands Soil | QSPHPEGDVTVVLRVTYNTLEAIIRDEFMLTESRVAH* |
Ga0132258_104417494 | 3300015371 | Arabidopsis Rhizosphere | MNATPMAWTAMVMATRSPYPEGDVTVMLRVTYNTLESIIRDEFMLTESRVSH* |
Ga0134112_101226462 | 3300017656 | Grasslands Soil | TRMYTATPMAWTAMVMAPQSPHPEGDVTVVLRVTYNTLEAIIRDEFMLTESRVAH |
Ga0184610_10657752 | 3300017997 | Groundwater Sediment | MAWTAMVMAPRSPYPEGDVTVVLRVTYNTLEAIIRDELMYTESRVTH |
Ga0184610_10751632 | 3300017997 | Groundwater Sediment | MAWTANVFAPRSPHPEGDVTVVLRVTYNTLEAIIRDEFMLTESRVAH |
Ga0184608_100055474 | 3300018028 | Groundwater Sediment | MAPRSPYPEGDVTVVLRVTYNTLEAIIRDEFMLTESRVAH |
Ga0184608_101844712 | 3300018028 | Groundwater Sediment | MLNTYATPMAWTANVFAPRSPHPEGDVTVVLRVTYNTLEAIIRDEFMLTESRVAH |
Ga0184634_100090901 | 3300018031 | Groundwater Sediment | MVMAPRSPYPEGDVTVVLRVTYNTLEAIIRDELMYTESRVTH |
Ga0184634_104449851 | 3300018031 | Groundwater Sediment | MTWTAMVMAPRSPYPEGDVTVVLRVTYNTLEAIIRDELMYTESRVTH |
Ga0184621_100504792 | 3300018054 | Groundwater Sediment | MAWTASVMAPRSPYPEGDVTVVLRVTYNTLEAIIRDEFMLTESRVAH |
Ga0184618_100575342 | 3300018071 | Groundwater Sediment | MLNASPMAWTANVFAPRSPHPEGDVTVVLRVTYNTLEAIIRDEFMLTESRVAH |
Ga0184633_104938911 | 3300018077 | Groundwater Sediment | MVLAPRSPYPEGDVTVVLRVTYNTLEAIIRDEFMLTESRVAH |
Ga0184625_102459292 | 3300018081 | Groundwater Sediment | THMLNASPMAWTANVFAPRSPHPEGDVTVVLRVTYNTLEAIIRDEFMLTESRVAH |
Ga0184639_102676301 | 3300018082 | Groundwater Sediment | MVMAPRSPYPEGDVTVVLRVTYNTLEAIIRDEFMLTESRVAH |
Ga0190272_105209782 | 3300018429 | Soil | MVMAPRSPYPEGDVTVVLRVTYNTLESIIRDELMYTESRVTH |
Ga0066667_102672411 | 3300018433 | Grasslands Soil | YTATPMAWTAMVMAPQSPHPEGDVTVVLRVTYNTLEAIIRDEFMLTESRVSH |
Ga0066667_111358061 | 3300018433 | Grasslands Soil | MYTATPMAWTAMVMAPQSPHPEGDVTVVLRVTYNTLEAIIRDE |
Ga0066662_102370351 | 3300018468 | Grasslands Soil | MVMAPQSPHPEGDVTVVLRVTYNTFEAIIRDEFMLTESRVSH |
Ga0066669_100933802 | 3300018482 | Grasslands Soil | MYTATPMAWTAMVMAPQSPHPEGDVTVVLRVTYNTLEAIIRDEFMLTESRVSH |
Ga0190264_121514862 | 3300019377 | Soil | AWTAMVMAPRSPYPEGDVTVVLRVTYNTLESIIRDELMYTESRVTH |
Ga0193715_11194441 | 3300019878 | Soil | MAWTANVFAPRSPHPEGDVTVVLRVTYNTLEAIIRDA |
Ga0210381_100937562 | 3300021078 | Groundwater Sediment | MAWTANVFAPRSPHPEGDVTVVLRVTYNTLDAIIRDEFMLTESRIAH |
Ga0210382_100526171 | 3300021080 | Groundwater Sediment | MAWTANVFAPRSPHPEGDVTVVLRVTYNTLEAIIRDEFM |
Ga0210382_102901552 | 3300021080 | Groundwater Sediment | MAWTALVMAPRSPYPEGDVTVVLRVTYNTLEAIIRDEFMLTESRVAH |
Ga0222622_100814652 | 3300022756 | Groundwater Sediment | MAWTANVFAPRSPHPEGDVTVVLRVTYNTLEAIIRDEFMLTESRIAH |
Ga0207653_101747522 | 3300025885 | Corn, Switchgrass And Miscanthus Rhizosphere | MAPRSPYPEGDVTVVLRITYNTLEAIIRDEFMVTESRVAH |
Ga0207688_103949732 | 3300025901 | Corn, Switchgrass And Miscanthus Rhizosphere | MAPRSPYPEGDVTVVLRVTYNTLEAIIRDEFMVTESRIAH |
Ga0207684_115364952 | 3300025910 | Corn, Switchgrass And Miscanthus Rhizosphere | MAWTASVMAPRSPYPEGDVTVMLRVTYNTLEAIIRDEFMVTESRVAH |
Ga0207662_103741972 | 3300025918 | Switchgrass Rhizosphere | MAWTANVFAPRSPHPEGDVTVVLRVTYNTLEAIIRDEFMLTESRVTH |
Ga0207646_1000000455 | 3300025922 | Corn, Switchgrass And Miscanthus Rhizosphere | MVMAPQSPHPEGDVTVVLRVTYNTLEAIIRDEFMLTESRVSH |
Ga0207690_116031912 | 3300025932 | Corn Rhizosphere | MAWTANVFAPRSPHPEGDVTVVLRVTYNTLEAIIRDEFMLTES |
Ga0207704_101870391 | 3300025938 | Miscanthus Rhizosphere | PMAWTANVFAPRSPHPEGDVTVVLRVTYNTLEAIIRDEFMLTESRVTH |
Ga0207689_105495302 | 3300025942 | Miscanthus Rhizosphere | MAWTASVMAPRSHYPEGDVTVVLRVTYNTLEAIIRDEFMLTESRVTH |
Ga0207667_106234852 | 3300025949 | Corn Rhizosphere | MAPRSPYPEGDVTVVLRVTYNTLEAIIRDEFMVTESRVAH |
Ga0207698_115888922 | 3300026142 | Corn Rhizosphere | MAWTASVMAPRSPYPEGDVTVVLRVTYNTLEAIIRDEFMVTESRVAH |
Ga0209438_10340902 | 3300026285 | Grasslands Soil | MAPRSPYPEGDVTVVLRVTYNTLESIIRDEFMVTESRVAH |
Ga0209470_10108884 | 3300026324 | Soil | MVMAPQSPHPEGDVTVVLRVTYNTLEAIIRDEFMLTESRVAH |
Ga0209377_10868631 | 3300026334 | Soil | MYTATPMAWTAMVMAPQSPHPEGDVTVVLRVTYNTLEAIIRDEFMLT |
Ga0209057_11648501 | 3300026342 | Soil | MAWTAMVMAPQSPHPEGDVTVVLRVTYNTLEAIIRDEFMLTESRVAH |
Ga0209376_10406242 | 3300026540 | Soil | MYTATPMAWTAMVMAPQSPHPEGDVTVVLRVTYNTLEAIIRDEFMLTESRVAH |
Ga0207570_10044212 | 3300026944 | Soil | MAWTANVFAPRSPHPEGDVTVVLRVTYNTLEAIIRDEFMVTESRVAH |
Ga0208997_10243852 | 3300027181 | Forest Soil | MSEPSSPYPEGEMTVVLRVTYNTLESIIRDEFMLTESRVSN |
Ga0208984_10237312 | 3300027546 | Forest Soil | MSEPSSPYPEGEMTVVLRVTYNTLESIIQDEFMLTESRVSN |
Ga0209982_10539311 | 3300027552 | Arabidopsis Thaliana Rhizosphere | TPMTWTAVVMATRSPYPEGDVTVVLRVTYNTLEAIIRDQLMFTESHVAG |
Ga0209818_12872422 | 3300027637 | Agricultural Soil | VMAPRSPYPEGDVTVVLRVTYNTLESIIRDELMYTESRVPH |
Ga0209117_10043144 | 3300027645 | Forest Soil | MSEPRSPYPEGEMTVVLRVTYNTLESIIRDEFMLTESRVSN |
Ga0209011_10584192 | 3300027678 | Forest Soil | MSEPGSPYPEGEMTVLLRVTYNTLESIIRDEFMLTESRVSN |
Ga0209180_102447042 | 3300027846 | Vadose Zone Soil | MVIAPQSPHPEGDVTVVLRVTYNTLEAIIRDEFMLTESRVSH |
Ga0307282_101618452 | 3300028784 | Soil | MAWTALVMAPRSPFPEGDVTVVLRVTYNTLEAIIRDEFMLTESRVAH |
Ga0307310_101570052 | 3300028824 | Soil | MAWTANVFAPRSPHPEGDVTVVVRVTYNTLEAIIRDEFMLTESRIAH |
Ga0307277_100148023 | 3300028881 | Soil | MAPRSPFPEGDVTVVLRVTYNTLEAIIRDEFMLTESRVAH |
Ga0326597_105844202 | 3300031965 | Soil | MYTASPMAWTAMVLTPRSPYPEGDVTVILRVTYNTLEAIIRDEFMLTESRVAWH |
Ga0326597_105882912 | 3300031965 | Soil | MYTATPMAWTAMVLTPRSPYPEGDVTVILRVTYNTLEAIIRDEFMLTESRVAWH |
Ga0364940_0105342_96_239 | 3300034164 | Sediment | MTWTAMVMAPRSPYPEGDVTVVLRVTYNTLEAIIRDELMYTESRVAH |
Ga0364936_040894_479_622 | 3300034773 | Sediment | MAWTAMVLAPRSPYPEGDVTVVLRVTYNTLEAIIRDELMYTESRVTH |
⦗Top⦘ |