NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F070755

Metagenome / Metatranscriptome Family F070755

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F070755
Family Type Metagenome / Metatranscriptome
Number of Sequences 122
Average Sequence Length 69 residues
Representative Sequence MSSAHSAEAPEIWLPLEVVGTEVVYIPTGTVLAYNLTAVAEADMWSDTVLVGTPADADKAHEGVRPESDETSD
Number of Associated Samples 86
Number of Associated Scaffolds 122

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 0.00 %
% of genes from short scaffolds (< 2000 bps) 0.00 %
Associated GOLD sequencing projects 86
AlphaFold2 3D model prediction Yes
3D model pTM-score0.13

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Unclassified (100.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Switchgrass Phyllosphere
(72.131 % of family members)
Environment Ontology (ENVO) Unclassified
(90.984 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant surface
(65.574 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 0.00%    β-sheet: 0.00%    Coil/Unstructured: 100.00%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.13
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 122 Family Scaffolds
PF08284RVP_2 34.43
PF03732Retrotrans_gag 7.38



 ⦗Top⦘

Phylogeny

NCBI Taxonomy

NameRankTaxonomyDistribution
UnclassifiedrootN/A100.00 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link



 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Switchgrass PhyllosphereHost-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Switchgrass Phyllosphere72.13%
Switchgrass AssociatedHost-Associated → Plants → Unclassified → Unclassified → Unclassified → Switchgrass Associated13.93%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil4.92%
PhyllosphereHost-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Phyllosphere4.92%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere1.64%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere0.82%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere0.82%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere0.82%

Visualization
Powered by ApexCharts



Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300005468Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaGEnvironmentalOpen in IMG/M
3300005618Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2Host-AssociatedOpen in IMG/M
3300009975Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_187 metaGHost-AssociatedOpen in IMG/M
3300009980Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_219 metaGHost-AssociatedOpen in IMG/M
3300009981Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_208 metaGHost-AssociatedOpen in IMG/M
3300009989Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_197 metaGHost-AssociatedOpen in IMG/M
3300009990Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_206 metaGHost-AssociatedOpen in IMG/M
3300009992Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_108 metaGHost-AssociatedOpen in IMG/M
3300009994Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_171 metaGHost-AssociatedOpen in IMG/M
3300009995Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_227 metaGHost-AssociatedOpen in IMG/M
3300010371Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1EnvironmentalOpen in IMG/M
3300010396Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2EnvironmentalOpen in IMG/M
3300010397Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4EnvironmentalOpen in IMG/M
3300010399Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3EnvironmentalOpen in IMG/M
3300014326Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaGHost-AssociatedOpen in IMG/M
3300014968Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaGHost-AssociatedOpen in IMG/M
3300015273Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_09MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015280Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_09MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015284Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_09MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015290Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_09MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015297Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_09MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015301Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_22AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015306Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_22AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015309Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_09MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015310Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_01AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015311Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_22AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015312Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_01AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015313Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_01AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015315Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_31MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015316Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_31MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015317Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_20JUN2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015318Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_22AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015324Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_20JUN2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015325Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_12JUL2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015326Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_01AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015329Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_20JUN2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015331Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_20JUN2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015333Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_12JUL2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015334Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_20JUN2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015336Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_12JUL2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015337Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_12JUL2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015338Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_20JUN2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015339Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_12JUL2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015340Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_20JUN2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015348Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_31MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015349Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_22AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015350Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_01AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015353Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_22AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015354Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_01AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017421Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_03OCT2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017432Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_12SEP2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017440Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_03OCT2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017445Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_12SEP2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017446Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_03OCT2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017693Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_03OCT2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017694Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_03OCT2016_LD1 MGHost-AssociatedOpen in IMG/M
3300025925Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300028051Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_NF_28AUG2017_LD1Host-AssociatedOpen in IMG/M
3300028063Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_MAIN_18SEP2017_LD1Host-AssociatedOpen in IMG/M
3300028139Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_NF_18SEP2017_LD1Host-AssociatedOpen in IMG/M
3300028142Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_NF_28AUG2017_LD1Host-AssociatedOpen in IMG/M
3300028143Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_MAIN_18SEP2017_LD1Host-AssociatedOpen in IMG/M
3300028262Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_MAIN_05JUN2017_LD1Host-AssociatedOpen in IMG/M
3300032464Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_MAIN_12JUL2016_LR1 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300032467Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_NF_31MAY2016_LR2 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300032468Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_MAIN_31MAY2016_LR1 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300032514Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_NF_12SEP2016_LR2 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300032590Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_NF_31MAY2016_LR3 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300032591Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_MAIN_31MAY2016_LR1 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300032689Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_NF_12JUL2016_LR2 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300032697Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R2_MAIN_12SEP2016_LR1 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300032758Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_17JUL2017_LR1 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300032760Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_07AUG2017_LR1 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300032781Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_17JUL2017_LR1 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300032791Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_07AUG2017_LR1 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300032812Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_17JUL2017_LR1 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300032821Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_15MAY2017_LR1 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300032823Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_05JUN2017_LR1 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300032827Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_05JUN2017_LR1 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300032888Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_05JUN2017_LR1 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300032889Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_07AUG2017_LR1 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300032914Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_07AUG2017_LR1 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300033523Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_18SEP2017_LR1 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300033531Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_28AUG2017_LR1 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300033539Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_28AUG2017_LR1 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300033542Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_18SEP2017_LR1 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
Ga0070707_10017534313300005468Corn, Switchgrass And Miscanthus RhizosphereMAAPTSSAHSAEAPEIWLPLEVVGTEVVYIPTGTVLAYNLTAVAEADMWSDTVLVGTPADADKAHEGVR
Ga0068864_10250067313300005618Switchgrass RhizosphereVVYIPTGTVLAYNLTAVAEADMWSDTVLVGTPADADKVHEGVRPESDETSD*
Ga0105129_10035823300009975Switchgrass AssociatedMSSAHSAEAPEIWLPLEVVGTEVVYIPTGTVLAYNPTDVVEADMWPDTVLVGKPADADKVHEGVRSELDETSD*
Ga0105129_10210323300009975Switchgrass AssociatedPEIWLPLKAVGTEVVYIQIGAVLAYNLTAVAEADMWSDMVLVGTPADADKAHEGVRPELDETSD*
Ga0105129_10917513300009975Switchgrass AssociatedPVAATPSSAHSAEAPEIWLALEVVGTEVVYIPTGTVLAYNLTAVAEADMWSDTVLVGTPADADKAHEGVRPESDETSD*
Ga0105135_11877013300009980Switchgrass AssociatedVAATPSSAHSAEAPEIWLPPEAVGTEGVYIPTDTVLADNPTAVVEADMWPDTVLVGTPADADKVHEGVRPESDETSD*
Ga0105133_10053723300009981Switchgrass AssociatedVAATPSSAHSAEAPEIWLPPEAVGTEVVYIPTDTVLADNPTAVVEADMWPDTVLVGTPADADKVHEGVRPESDETSD*
Ga0105133_10221423300009981Switchgrass AssociatedVGTEVVYILTGTVLAYNLTAVAEADMWSDTVLVGTPADADKAHEGVRPESDETSD*
Ga0105133_13197313300009981Switchgrass AssociatedMFSAHFAEAPEIWLPLEVVGTAVVYIPTGTVLAYNLSAVAEADMWSDTALVGTLADADKAHEGVRPESDETSD*
Ga0105131_10497023300009989Switchgrass AssociatedVAAPTSSAHFAEAPEIWLPPEAVGTEVVYNPSGAVLAYNLTAVVEADMWSDTVLVGTPADADKAHEGVRPESDETFDLPD*
Ga0105131_10771613300009989Switchgrass AssociatedVVAPTSSAHFAEAPEIWLPLEVVGTEVVYIPTGTVLAYNLTAVAEADMWSDTVLADTPADADKAHEGVRPESDETSDLPD*
Ga0105131_12070113300009989Switchgrass AssociatedMSSAHSAEAPEIWLPPKAVGTEVVYIPTGTVLAYNLTAVAEADMWSDTALVGTPADADKVHEGVRPESDETSD*
Ga0105131_12078113300009989Switchgrass AssociatedVVAPTSSAHFAEAPEIWLPLEVVGTEVVYIPMGTVLAYNLTAIAEADMWSDTVLVGTPADADKAHEGVRPELDETSD*
Ga0105132_11817823300009990Switchgrass AssociatedVAAPTSSAHFAEAPEIWLPPEAVGTEVVYNPSGAVLAYNLTAVVEADMWSDTVLVGTPADADKAHEGVRPESDETSDLPD*
Ga0105120_103589423300009992Switchgrass AssociatedVTATPSSAQSAEAPEIWLPLEVVSTEVVYIPTGTVLAYNLTAVAAADMCSDTALVGTLADADKVHEGVRLESDETSD*
Ga0105120_103841023300009992Switchgrass AssociatedVAAPTSSAHSAEAPDIWLPLEAVGTEEVYTPSGALLAYNLTAVVEADMWSDTVLVGSPADADKVHEGVRSELYETSSLLD*
Ga0105126_100662823300009994Switchgrass AssociatedVGTEVVYILTGAVLAYNLTAIAEADMWSDTVLVGTPADAGKVHEGVRPELDETSD*
Ga0105126_104095223300009994Switchgrass AssociatedTAVVYIPTGTVLAYNLTAVAEADMWSDTVLVGTPADADKAHEGVRPESDETSD*
Ga0105139_101495913300009995Switchgrass AssociatedVVYIQIGAVLAYNLTAVAEADMWSDMVLVGTPADADKAHEGVRPELDETSD*
Ga0134125_1026176233300010371Terrestrial SoilVGTEVVYIPTGTVLAYNLTAVAEADMWSDTVLVGTPADADKAHEGVRPESDETSDLPD*
Ga0134126_1129575923300010396Terrestrial SoilMSSAHSAEAPEIWLPLEVVGTEVVYIPTGTVLAYNLIAVVEADMWSDTVLVGTPADADKAHEGVRSELDETSD*
Ga0134126_1287135923300010396Terrestrial SoilVAAPTSSAHSAEAPDIWLPLEAVSTEEVYTPSGALLAYNLTAVVEADMWSDTVLVGTPADADKAPEGVRLELDE
Ga0134124_1179437623300010397Terrestrial SoilVAAPTSSEHFAEAPEIWLPLEAVGTEVVYNPSGAVLAYNLTAVVEADMWSDTVLVGTPADTVKAHEGVRPESDETSDLPD*
Ga0134127_1113181113300010399Terrestrial SoilTVLAYNLTAVAETDMWSDTVLVGTPADAGKVHEGVRPELDETSD*
Ga0134127_1358471223300010399Terrestrial SoilVAAPTSSAHFAEAPEIWLPLEVVGTEMVYIPTGTVLAYNLTAVAEANMWYDTVLVGTPADADKAHEGVRPESDKTSD*
Ga0157380_1282620013300014326Switchgrass RhizosphereVAAPTSSAHSAEAPEIWLPLEVVGTEVVYIPTGTVLAYNLTAVAEANMWSDTVPVGTPADDDKVHEGV
Ga0157379_1158986213300014968Switchgrass RhizosphereMSSAHSAEAPEIWLPLEVVGTEVVYIPTGTVLAYNLTAVAEADMWSDTVLVGTPADADKAHEGVRPESDETSD*
Ga0182102_100348513300015273Switchgrass PhyllosphereVAAPTSSAHSAEAPEIWLPLEVVGTEVVYIPTGTVLADNPTAVVEADMWPDTVLVGTPADADKVHEGVRSELYETSG*
Ga0182102_100643513300015273Switchgrass PhyllosphereVVYIPTGTVLAYNLTAVAEADMWSDTVLVGTPADADKAHEGVRPESDETSD*
Ga0182100_103341123300015280Switchgrass PhyllosphereEAPEIWLPPEAVGTEVVYIPTDTVLAYNLTAVAEADMWSDTVLVGTPADADKVHEGVRPELDETSD*
Ga0182101_100759413300015284Switchgrass PhyllosphereVAAPTSSAHFAEAPEIWLPLEAVGTEAVYTPSGAVLADNPTAVVEADMWSDTVLVGTPADADKAHEGVRPESDETSD*
Ga0182101_105423813300015284Switchgrass PhyllosphereVAAPTSSAHSAEAPEIWLPLEAVGTEVVYTPSGAVLAYNLTAVVEADMWSDTVLVGTPADADKAHEGVRSELNETSD*
Ga0182105_109177623300015290Switchgrass PhyllosphereMSSAHSAEAPEIWLPLEVVGTEVVYIPSVAVLAYNLTVVAEADMWSDTVLVGTPADADKAHEGVRPELDETSD*
Ga0182104_102149913300015297Switchgrass PhyllosphereVAAPTSSAHSAEAPEIWLPLEVVGTEVVYIPTGTVLAYNLTAVAEADMWSDTVLVGTPADADKAPEGVRLELDETSD*
Ga0182184_103906923300015301Switchgrass PhyllosphereMAAPTSFAHSAEAPEIWLPLEVVGTEVVYIPTGTVLAYNLIAVVEADMWSDTVLVGTPADADKVHEGVRPELDETSD*
Ga0182180_106246713300015306Switchgrass PhyllosphereVAAPTSSAHSAEAPEIWLPLEVVGTEVVYIPTGTVLAYNLTAVAEADMWSDTVLVGTPADADKVHEGVRPEIDETSD*
Ga0182180_108135613300015306Switchgrass PhyllosphereMSSAHSAEALEIWLPLEVVGTAVVYIPTGTVLAYNLIAVVEADMWPDTVLVDTPADADKVHEGVRPESDETSDLPD*
Ga0182098_108856523300015309Switchgrass PhyllosphereMSSAHSAEAPEIWLPLEAVGTEVVYTPTGTVLAYNLTAVAKANMWSDTVLVGTPADADKAHEGVRSELDETSD*
Ga0182162_102636323300015310Switchgrass PhyllosphereMSSAHSAEAPEIWLPLEAVGTEVVYIPTAVVLAYNLTAIAEADMWSDTVLVGTPADADMAHEGVRPELDETSD*
Ga0182162_105692413300015310Switchgrass PhyllosphereAAPTSSAHFAEAPEIWLPLEVVGTAVVYNPSGAVLAYNLTAVVEADMWSDTVLVGTPADADKVHEGVRPESDETSD*
Ga0182182_108735323300015311Switchgrass PhyllosphereVAAPTSSAHSAETPEIWLPLKVVGTEVVYIPSGAVLAYNLTAVAEADMWSDTVLVGTPADADKAHEG
Ga0182182_109181213300015311Switchgrass PhyllosphereVAVPTSSAHSAEAPEIWLPLEVVGTAVVYIPTGTVLAYNLTAIAEADMWSDTVLVGTPADADKAHEGVRPESDETSD*
Ga0182182_109489423300015311Switchgrass PhyllosphereVGTEVVYISSVAVLAYNLTAVAEADMWSDTVLVGTLADADKVHEGVRSESDETFD*
Ga0182168_108135923300015312Switchgrass PhyllosphereVAAPTSSAHSAEAPEIWLPLEVVGTEVVYIPTGTVLAYNLIAIVEADMWPDTVLVGTPADADKVHEGVRPELDETSY*
Ga0182168_109368713300015312Switchgrass PhyllosphereMGTEVVYTPSGAVLAYNLTTVVEADMWSDTVLVGTPADADKAHEGVRPESDETSD*
Ga0182164_102515013300015313Switchgrass PhyllosphereMSSAHSAEAPEIWLPPEAVGTEVVYIPTGTVLAYNLTAVAEADMWSDTALVDTPADADKVHEGVRPESDETSD
Ga0182164_107928913300015313Switchgrass PhyllosphereMFSVHSVEAQEIWLPLEDVGTEVVYILTGTVLAYNLTAVAEADMWSDTVLVGTPADADKVHEGVRSELDETSD*
Ga0182120_109102913300015315Switchgrass PhyllosphereVVEADMWSDTVLVGTPADTDKAHEGVRPESDETSD*
Ga0182121_110285413300015316Switchgrass PhyllosphereVIWLPLEVVGTEVVYIPTGTVLAYNLITVVEADMWPDTALVGTPADADKVHEGVRPESDETSD*
Ga0182121_111102413300015316Switchgrass PhyllosphereVVAPTSSAHFAEAPEIWLPLEIVGTAVVYIPTGTVLAYNLTAVAEADMWSDTVLVGTPADADKAHEGVRPESDETSD*
Ga0182136_103794413300015317Switchgrass PhyllosphereMSSAHSAEAPEIWLPLEAVGTEVVYTPTGTVLAYNLTAVAEADMWSDTVLVGIPADADKAHEGVRPESDETSD*
Ga0182181_109909913300015318Switchgrass PhyllosphereVVGTEVVYIPTGTVLADNPTVVVEADMWPDTVLVGTPADADKVHEGVWSELYETSG*
Ga0182134_102869513300015324Switchgrass PhyllosphereVAAPTSSAHFAEAPEIWLPPEAVGTEVVHNPSGAVLAYNLTAVVEADMWSDTVLVGTPADADKAHEGVRPESDEISD*
Ga0182134_104646513300015324Switchgrass PhyllosphereVAAPTSSAHSAEAPEIWLPPEAVGTEVVYIPTGTVLAYNLTAVAEADMWSDTALVGTPADADKVHEGVRPESDETSD*
Ga0182148_103443513300015325Switchgrass PhyllosphereMSSAHFAEAPEIWLPLEVVGTAVVYIPTGTVLAYNLTAVAEADMWSDTVLVGTPADADKAHEGVRPESDETSD*
Ga0182148_105505013300015325Switchgrass PhyllosphereVAATPSSAHSAEAPEIWLPPEAVGTEVVYIPTDTVLAYNLTAVAEADMWSDTVLVGTPADADKVHEGFRSELYETSGLLD*
Ga0182166_111969823300015326Switchgrass PhyllosphereVAAPTSSAHFAEAPEIWLPPEAVGTEVVYNPSGAVLAYNLTAVVEADMWSDTVLVGTPADADKVHEGVRPESDETSD*
Ga0182135_104900123300015329Switchgrass PhyllosphereMSSAHSAEAPEIWLPLEVVGTEVVYIPTGTVLAYNLIAVVEADMWPDTVLVGTPADADKVHEGVRSELDETSD*
Ga0182131_105501323300015331Switchgrass PhyllosphereMSSAHFAEAPEIWLSLEVVGTAVVYIPTGTVLAYNLTAVAEADMWSDTVLVGTPADADKAHEGVRPESDETSD*
Ga0182131_114707113300015331Switchgrass PhyllosphereVAAPTSSAHFAEAPEIWLPLEVVGTAVVYILTGTVLAYNLTAIAEADMWSDTVLVGTPADADKAHEGVRPESDETSD*
Ga0182147_108240023300015333Switchgrass PhyllosphereMSSAHSAEAPEIWLPLEVVGTEVVYIPTGTVLADNPTAVVEADMWPDTVLVGTPADADKVHEGVRSELYETSG*
Ga0182147_116498423300015333Switchgrass PhyllosphereVAAPTSSAHSAEAPDIWLPLEAVGIEVVYIPTGTVLAYNLTAVAEADMWSDTVLVGTPADADKVHEGVR
Ga0182132_103784533300015334Switchgrass PhyllosphereVVYIPTGTVLAYNLTAVAEADMWSDTVLVGTPADAGKVHEGVRPELDETSN*
Ga0182150_111730023300015336Switchgrass PhyllosphereVGTEAVYTPSGTVLAYNLTAVVEADMWSDTALVGTPADADKVHEGVRFELDETSD*
Ga0182151_107704413300015337Switchgrass PhyllosphereGVHPVAAPTSSAHSAEAPEIWLPLEVVGTEVVYILTGTVLAYNLTAVAEADMWSDTVLVGTPADADKVYEGVRHESDETSD*
Ga0182137_102875323300015338Switchgrass PhyllosphereVAAPTSSAHFAEAPEIWLPPEAVGTEVVYNPSGAVLAYNLTAVVEADMWSDTALVGTPADADKVHEGVRHELDETSD*
Ga0182137_112029413300015338Switchgrass PhyllosphereMSSAHSAEAPEIWLPLEVVGTAVVYIPTGTVLAYNLTAVAEADMWSDTVLVGTPADADKAHEGVRPESDETSD*
Ga0182149_110822313300015339Switchgrass PhyllosphereVGTEVFYIPTGTVLAYNLTAVADADMWSDTVLVGTPADADKVHEGVRPELDEISD*
Ga0182133_114319923300015340Switchgrass PhyllosphereVAAPTSSAHFAEAPEIWLPLEVVGTAVVYIPTGTVLAYNLTAVAEADMWSDTVLVGTPADADKAHEGVRPESDETSDLPD*
Ga0182115_126282413300015348Switchgrass PhyllospherePLEVVGTEVVYIPTGTVLAYNLIAVVEADMWSDTVLVGTPADADKVHEGVRPELDETSD*
Ga0182185_115433023300015349Switchgrass PhyllosphereVAAPTSSAHSAEAPDIWLPLEAVSTEEVYTPSGALLAYNLTAVVEADMWSDTVLVGTPTDADKAPEGVRLELDETSD*
Ga0182185_118175313300015349Switchgrass PhyllosphereVGTEVVYIPTGTVLADNPTAVVEADMWPDTVLVGTPADAGKVHEGVRPESDETSD*
Ga0182163_123464513300015350Switchgrass PhyllosphereVAAPTSSAHSAEAPEIWLPLEVVGTGVVYIPSGAVLAYNLTAVVEGDMWSDTVLVGTPADADKVHEGVRPELDETSD*
Ga0182163_124120213300015350Switchgrass PhyllosphereVAATPSSEQSAEAPEIWLPLEVVSTEVVYIPTGTVLAYNLTAVAEADMCSDTALVGTPADADKAHEGVRPESDETSDLPD*
Ga0182179_114621223300015353Switchgrass PhyllosphereVAAPTSSAHFAEAPEIWLPPEAVGTEVVYNPSGAVLAYNLTAVVEADMWSDTVLVGTPADADKAHEGVRPESDETSD*
Ga0182179_126531913300015353Switchgrass PhyllosphereVAATPSSAHSAEAPEIWLPLEVVGTAVVYIPTGAVLAYNLTAVAEADMWSDTVLVGSSADADEVHEGVRPEFDETSD*
Ga0182167_130203923300015354Switchgrass PhyllosphereVGTEVVYIPTGTVLADNPTAVVEADMWPDTVLVGTPADADKVHEGVRPESDETSD*
Ga0182213_106267213300017421Switchgrass PhyllosphereVYIPTGTVLAYNLTAVAEADMWSDTIFIGTPADADKAHEGVRPELDETSD
Ga0182196_115265123300017432Switchgrass PhyllosphereVVYIPSGAVLAYNLTAVAEADMWSDTVLVGTPADADKAHEGVRPELDETSNLPD
Ga0182214_109029013300017440Switchgrass PhyllosphereMSSAHSAEAPEIWLPLEVVGTAVVYIPTGAVLAYNLTAVAEADMWSDTVLVGTPADADKAHEGVRSELDETSD
Ga0182198_119133923300017445Switchgrass PhyllosphereVGTEVVYIPTGTVLAYNLTAVAEADMWSNTVLVGTPVDADKAHEGVRPESDETSD
Ga0182217_106647513300017446Switchgrass PhyllosphereVAAPTSFAHSAEAPEIWLPLEVVSTEVVYIPTGTVLAYNLTAVAEADMWSDTVLVSTPADAGKVHEGVRPELDETSD
Ga0182216_120436013300017693Switchgrass PhyllosphereMGTEVVYTPSGAVLAYNLTTAVEADMWSDTVLVGTPADAGKVHEGFRSELDETSDSLD
Ga0182211_109457023300017694Switchgrass PhyllosphereVAAPTSSAHSAEAPEIWLPLEVVGTEVVYIPTGTVLAYNLTAVAEADMWSDTVLVGTPADADKVHEGVQSELDETSD
Ga0207650_1064194923300025925Switchgrass RhizosphereVAAPTSSAHFAEAPEIWLPPEAVGTEVVYIPTGTVLAYNLTAVAEADMWSDTVLVGTPADADKAHEGVRPESDETSN
Ga0268344_100718913300028051PhyllosphereVAAPTSSAHFAEAPEIWLPLEVVGTVVVYIPTGTVLAYNLTAVAEADMWSDTALVGTPADADKVHEGVRPES
Ga0268350_105390423300028063PhyllosphereMSSAHSAEAPEIWLPLEVVGTAVVYIPTGTVLAYNLTAVAEANMWSDTVLVGTPADADKAHEGVRPESDETSD
Ga0268355_100708613300028139PhyllosphereMSSAHSAEAPEIWLPLEVVGTAVVYIPTGTVLAYNLTAIAEADMWSDTVLVGTPADADKAHEGVRPESDETSD
Ga0268347_100689523300028142PhyllosphereVAVPTSSAHSAEAPEIWLPLEVVGTAVVYIPTGTVLAYNLTAIAEADMWSDTVLVGTPADADKAHEGVRPESDETSD
Ga0268348_101664713300028143PhyllosphereVVAPMSSAHSAEAPEIWLPLEVVGTEVVYIPTGTVLAYNLTAVAEADMWSDTVLVGTPADADKAHEGVRPESDETSD
Ga0268310_102963313300028262PhyllosphereAPEIWLPLEAVGTEVVYNPSGAVLAYNLTAVVEADMWSDTVLVGTPADTDKAHEGVRPESDETSDLPD
Ga0214492_101337023300032464Switchgrass PhyllosphereVAAPTSSAHFAEAPEIWLSLEVVGTAVVYIPTGTVLAYNLTAVAEADMWSDTVLVGTPADADKAHEEGPA
Ga0214492_106802733300032464Switchgrass PhyllosphereGTEVVYIPTGTVLAYNLTAVAEADMWSDTVLVGTPADANKVHEGVRPESDETSD
Ga0214488_102435013300032467Switchgrass PhyllosphereLLLEAVGTEVVYIPTGTVLAYNLTAVAEADMWSDIVLVGTPADADKVHEGVRPESYETSD
Ga0214488_108099013300032467Switchgrass PhyllosphereLLLEAVGTEVVYIPTGTVLAYNLTAVAEADMWSDTVLVGTPADADKVHEGVRPESDETSD
Ga0214488_111212523300032467Switchgrass PhyllosphereVAAPTSSAHFAEAPEIWLSLEVVGTAVVYIPTGTVLAYNLTAVAEADMWSDTVLVGTPADADKAHEGVRPESDETSD
Ga0214482_102109123300032468Switchgrass PhyllosphereVVYNPSGAVLAYNLTAVVEADMWSDTVLVGTPADADKAHEGVRPESDETSD
Ga0214502_123508013300032514Switchgrass PhyllosphereVGTAVVYNPSGAVLAYNLTAVAEADMWSDTVLVGTPADADKAHEGVRPELDETSD
Ga0214502_139399923300032514Switchgrass PhyllosphereAPTSSAHSAEAPEIWLPPEVVGTEVVYIPTGTVLAYNLIAVAEADMWSDTALVGTPADADKVHEGVRPESDETSD
Ga0214489_103720223300032590Switchgrass PhyllosphereAPTFFAHSAEAPEIWLLLEAVGTEVVYIPTGTVLTYNLTAVAEADMWSDTVLVGTLADADKVHEGVRPESDETSD
Ga0214489_106038523300032590Switchgrass PhyllospherePVAAPTSSAHFAEAPEIWLSLEVVGTAVVYIPTGTVLAYNLTAVAEADMWSDTVLVGTPADADKAHEGVRPESDETSD
Ga0214484_101827523300032591Switchgrass PhyllosphereVAAPTSSAHSAEAPEIWLPLEVVGTEVVYIPSGAVLAYNLTAVAEADMWSDTVLVGTPADADK
Ga0214484_110858123300032591Switchgrass PhyllosphereVVYIPTGTVLAYNLTAVAEADMWSDTVLVGTPADADKAHEGVRPESDETSD
Ga0214484_112524823300032591Switchgrass PhyllosphereYNLTAVAEADMWSDTVLVGTPADADKVHEGVRPESDETSD
Ga0214497_102720543300032689Switchgrass PhyllosphereVAAPTPSAHSVEAPEIWLPLEVVGTEVVYIPTGTVLTYNLTAVAEADMWSDIVLVGTLAEADKVHEGVRPKSDETSD
Ga0214499_118823713300032697Switchgrass PhyllosphereTVLADNPTAVVEADMWPDTVLVGTPADADKVHEGVWSELYETSG
Ga0314746_106050813300032758Switchgrass PhyllospherePEIWLLLEAVGTEVVYIPTGTVLAYNLTAVAEADMWSDIVLVGTPADADKVHEGVRPESYETSD
Ga0314754_106872713300032760Switchgrass PhyllosphereGVHPAAAPTFFAHSAEAPEIWLLLEAVGTEVVYILTGTVLAYNLTAVAEADMWSDTVLVGTPADADKAHEGVRPESDETSD
Ga0314742_108189823300032781Switchgrass PhyllosphereVAAPTSSAHFAEAPEIWLSLEVVGTAVVYIPTGTVLAYNLTAVAEADMWSDTVLVGTPADADKVHEGVRSELDETSD
Ga0314748_108689723300032791Switchgrass PhyllosphereVAAPTSSAHSAEAPEIWLPLEVVGTEVVYIPTGTVLAYNLIAVVEADMWPDTVLVGTPADADKVHEGVRSELDETSD
Ga0314745_111192713300032812Switchgrass PhyllosphereAEAPEIWLPPEAVGTEVVYIPTGTVLAYNLTAVAEADMWSDTALVGTPADADKVHEGVRPESDETSD
Ga0314745_112166523300032812Switchgrass PhyllosphereAEAPEIWLPPEAVGTEVVYIPTGTVLADNPTAVVEADMWPDTVLVGTPADADKVHEGIRSELYETSG
Ga0314719_104644323300032821Switchgrass PhyllosphereVAAPTSSAHSAEAPEIWLPLEVVGTVVVYIPSSAVLAYNLTAVAEADMWSDIVLVGTPADADKAHEGVRPES
Ga0314723_100154943300032823Switchgrass PhyllosphereVAAPTSSAHFAEAPEIWLSLEVVGTAVVYIPTGTVLAYNLTAVAEADMWSDTVLVGTPADADKAH
Ga0314730_11939723300032827Switchgrass PhyllosphereVAAPTSSEHFAEAPEIWLPLEAVGTEVVYNPSGAVLAYNLTAVVEADMWSDTVLVGTPADTDKAHEGVRPKSDETSDLPD
Ga0314728_11925813300032888Switchgrass PhyllosphereVAAPTSSAHSAEAPEIWLPLEVVGTKVVYIPSGAVLTYNLTAVAEADMWSDTVLVGTPADADKAHEGVRPESDETSD
Ga0314751_103973013300032889Switchgrass PhyllosphereVAAPTSSAHFVEAPEIWLPLEVVGTAVVYIPTGTVLAYNLTAVAEADMWSDTVLVGTPADADKAHEGVRPESDETSD
Ga0314750_104754713300032914Switchgrass PhyllosphereVAAPTSSAHSAEAPEIWLPLEVVGTEVVYIPSGAVLAYNLTAVAEADMCSDTALVGTPADADKVHEGVRLESDETSD
Ga0314768_127426013300033523Switchgrass PhyllosphereEIWLPLEVVGTVVVYIPSGAVLAYNLTAVVEADMWSDTVLVGTLADADKVHEGVRPESDETFD
Ga0314756_106369413300033531Switchgrass PhyllosphereVAGPTSSAHSAEAPEIWLPLEVVGTVVVYIPSGAVLAYNLTAVAEADMWSDTVLVGTPADADKAHEGVRPELDEISD
Ga0314762_109513313300033539Switchgrass PhyllosphereMSSTHSAEAPEIWLPLEVVGTEVVYIPTGTVLADNPTAVVEADMWPDTVLVGTPADADKVHEGIRSELYETSG
Ga0314769_108208813300033542Switchgrass PhyllosphereVAAPTSSEHFAEAPEIWLPLEAVGTEVVYNPSGAVLAYNLTAVVEADMWSDTVLVGTPADTDKALVGVRPESDETSDLPD


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.