Metagenome / Metatranscriptome Family F070617

Overview

Basic Information

• Family ID: F070617
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 123
• Average Sequence Length: 42 residues
• Representative Sequence: ASGLQVLQLADVDGQPLITALVSYRDPALAIRCGLPPALP
• Number of Associated Samples: 101
• Number of Associated Scaffolds: 123

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Bacteria
• % of genes with valid RBS motifs: 0.00 %
• % of genes near scaffold ends (potentially truncated): 99.19 %
• % of genes from short scaffolds (< 2000 bps): 95.93 %
• Associated GOLD sequencing projects: 99
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.50

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Bacteria (90.244 % of family members)
• NCBI Taxonomy ID: 2
• Taxonomy: All Organisms → cellular organisms → Bacteria

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (53.658 % of family members)
• Environment Ontology (ENVO): Unclassified (54.472 % of family members)
• Earth Microbiome Project Ontology (EMPO): Unclassified (47.154 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Fibrous
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 8.82%
  β-sheet: 26.47%
  Coil/Unstructured: 64.71%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 123 Family Scaffolds
PF00710	Asparaginase	11.38
PF02452	PemK_toxin	5.69
PF04672	Methyltransf_19	5.69
PF13600	DUF4140	2.44
PF00196	GerE	1.63
PF01979	Amidohydro_1	1.63
PF07859	Abhydrolase_3	1.63
PF13830	DUF4192	1.63
PF02310	B12-binding	1.63
PF02467	Whib	1.63

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 123 Family Scaffolds
COG0252	L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D	Translation, ribosomal structure and biogenesis [J]	22.76
COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	Defense mechanisms [V]	5.69
COG0657	Acetyl esterase/lipase	Lipid transport and metabolism [I]	1.63
COG3733	Cu2+-containing amine oxidase	Secondary metabolites biosynthesis, transport and catabolism [Q]	1.63
COG4813	Trehalose utilization protein	Carbohydrate transport and metabolism [G]	0.81
COG0053	Divalent metal cation (Fe/Co/Zn/Cd) efflux pump	Inorganic ion transport and metabolism [P]	0.81
COG4449	Predicted protease, Abi (CAAX) family	General function prediction only [R]	0.81
COG4118	Antitoxin component of toxin-antitoxin stability system, DNA-binding transcriptional repressor	Defense mechanisms [V]	0.81
COG3965	Predicted Co/Zn/Cd cation transporter, cation efflux family	Inorganic ion transport and metabolism [P]	0.81
COG3663	G:T/U-mismatch repair DNA glycosylase	Replication, recombination and repair [L]	0.81

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	91.06 %
Unclassified	root	N/A	8.94 %

Level 2

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	90.24 %
Unclassified	root	N/A	8.94 %
Viruses	superkingdom	All Organisms → Viruses	0.81 %

Level 3

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	90.24 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	0.81 %
Unclassified	root	N/A	8.94 %

Level 4

Name	Rank	Taxonomy	Distribution
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	0.81 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.63 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	71.54 %
Unclassified	root	N/A	8.94 %

Level 5

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	67.48 %
Deinococcus-Thermus	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus	0.81 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.63 %
Unclassified	root	N/A	8.94 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	0.81 %

Level 6

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	52.03 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	0.81 %
Deinococci	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci	0.81 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.63 %
Unclassified	root	N/A	8.94 %

Level 7

Name	Rank	Taxonomy	Distribution
Catenulisporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales	6.50 %
Ceeclamvirinae	subfamily	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Ceeclamvirinae	0.81 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.81 %
Deinococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Deinococcales	0.81 %
Frankiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales	1.63 %
Geodermatophilales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales	4.07 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	0.81 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.63 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	1.63 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	20.33 %
Unclassified	root	N/A	8.94 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	3.25 %

Level 8

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	3.25 %
Actinospicaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Actinospicaceae	6.50 %
Deinococcaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Deinococcales → Deinococcaceae	0.81 %
Frankiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae	1.63 %
Geodermatophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	4.07 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.81 %
Myrnavirus	genus	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Ceeclamvirinae → Myrnavirus	0.81 %
Nocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae	0.81 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.63 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	1.63 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	0.81 %
Treboniaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae	19.51 %
Unclassified	root	N/A	8.94 %

Level 9

Name	Rank	Taxonomy	Distribution
Actinocrinis	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Actinospicaceae → Actinocrinis	2.44 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	3.25 %
Deinococcus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Deinococcales → Deinococcaceae → Deinococcus	0.81 %
Frankia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	1.63 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.81 %
Myrnavirus myrna	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Ceeclamvirinae → Myrnavirus → Myrnavirus myrna	0.81 %
Nocardia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia	0.81 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.63 %
Sinosporangium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Sinosporangium	0.81 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	1.63 %
Trebonia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia	19.51 %
Unclassified	root	N/A	8.94 %
unclassified Geodermatophilaceae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → unclassified Geodermatophilaceae	4.07 %

Level 10

Name	Rank	Taxonomy	Distribution
Actinocrinis puniceicyclus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Actinospicaceae → Actinocrinis → Actinocrinis puniceicyclus	2.44 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	3.25 %
Deinococcus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Deinococcales → Deinococcaceae → Deinococcus	0.81 %
Geodermatophilaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → unclassified Geodermatophilaceae → Geodermatophilaceae bacterium	4.07 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.81 %
Myrnavirus myrna	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Ceeclamvirinae → Myrnavirus → Myrnavirus myrna	0.81 %
Nocardia brasiliensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia → Nocardia brasiliensis	0.81 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.63 %
Sinosporangium siamense	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Sinosporangium → Sinosporangium siamense	0.81 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	19.51 %
Unclassified	root	N/A	8.94 %
unclassified Frankia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → unclassified Frankia	0.81 %
unclassified Streptomyces	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces	0.81 %

Level 11

Name	Rank	Taxonomy	Distribution
Actinocrinis puniceicyclus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Actinospicaceae → Actinocrinis → Actinocrinis puniceicyclus	2.44 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	3.25 %
Deinococcus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Deinococcales → Deinococcaceae → Deinococcus	0.81 %
Frankia sp. EI5c	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → unclassified Frankia → Frankia sp. EI5c	0.81 %
Geodermatophilaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → unclassified Geodermatophilaceae → Geodermatophilaceae bacterium	4.07 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.81 %
Myrnavirus myrna	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Ceeclamvirinae → Myrnavirus → Myrnavirus myrna	0.81 %
Nocardia brasiliensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia → Nocardia brasiliensis	0.81 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.63 %
Sinosporangium siamense	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Sinosporangium → Sinosporangium siamense	0.81 %
Streptomyces sp. ISL-1	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. ISL-1	0.81 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	19.51 %
Unclassified	root	N/A	8.94 %

Associated Scaffolds

Scaffold	Taxonomy	Length
3300002245|JGIcombinedJ26739_100126135	All Organisms → cellular organisms → Bacteria	2413
3300004633|Ga0066395_10496369	All Organisms → cellular organisms → Bacteria	703
3300005406|Ga0070703_10375267	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	613
3300005764|Ga0066903_108609144	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	519
3300005764|Ga0066903_109147114	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	500
3300006028|Ga0070717_10101835	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2439
3300006028|Ga0070717_10864797	All Organisms → cellular organisms → Bacteria	823
3300006163|Ga0070715_10120955	All Organisms → cellular organisms → Bacteria	1248
3300006605|Ga0074057_11553698	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → unclassified Geodermatophilaceae → Geodermatophilaceae bacterium	801
3300007265|Ga0099794_10654194	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	558

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	1.63%
Terrestrial	Environmental → Terrestrial	98.37%

Category

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	1.63%
Peat	Environmental → Terrestrial → Peat	4.06%
Soil	Environmental → Terrestrial → Soil	94.31%

Type

Habitat	Taxonomy	Distribution
Loam	Environmental → Terrestrial → Soil → Loam	10.57%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	82.93%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	4.06%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.63%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.81%

Subtype

Habitat	Taxonomy	Distribution
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.88%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.81%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	62.60%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	5.69%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.81%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.81%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.81%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	19.51%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	4.06%

Habitat

Habitat	Taxonomy	Distribution
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.81%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.81%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.81%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.06%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.44%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.81%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.81%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	4.06%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.81%
Permafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil	0.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	53.66%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	8.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.81%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	10.57%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	3.25%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	6.50%

Associated Samples

Taxon OID	Sample Name	Habitat Type
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental
3300005406	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG	Environmental
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental
3300006605	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAB (Metagenome Metatranscriptome)	Environmental
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental
3300009700	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG	Environmental
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGIcombinedJ26739_1001261354	3300002245	Forest Soil	PDGAGRLAATGLQILQLGEAGGQPLITALVSYRDPALAARCGLPAFLP*
Ga0066395_104963692	3300004633	Tropical Forest Soil	RLAASGLQVLQLGEVAGQILITALVSYRDPALAVRCGLPEIIG*
Ga0070703_103752672	3300005406	Corn, Switchgrass And Miscanthus Rhizosphere	TGLQLLQLANVDGQPLITALVSYRDPSLAVRCGLPAELPLTPG*
Ga0066903_1086091444	3300005764	Tropical Forest Soil	LVASGLQVLQLADSGGQPLITALVSYRDPALAIRCGLPPTLP*
Ga0066903_1091471142	3300005764	Tropical Forest Soil	DERGRLAASGLQVLQLGEVDGQILITALVSYRDPELAVRCGLPAILG*
Ga0070717_101018354	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	ARLVVTGLQIVQLADVNGELLISALVSYRDPAVAVRCGLPAVID*
Ga0070717_108647971	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	RLAVSGLQVLQLADVAGQPLIIALVSYRDPAVAIRCGLPAVLS*
Ga0070715_101209551	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	DDHGRLAVSGLQVLQVNDVDGQPLITALVSYRDPSLAIRCGLPAALP*
Ga0074057_115536981	3300006605	Soil	EHGRLAASGLQVLQLGEVDGQILITALVSYRDPALAVRCGLPEIIG*
Ga0099794_106541942	3300007265	Vadose Zone Soil	ASGLQVLQLTSVDGQPLITALVSYRDPALVIRCGLPAAL*
Ga0116217_109240901	3300009700	Peatlands Soil	VLQLGEVDGQVLITHLVSYRDPALAIRCGLPPALP*
Ga0126374_109095953	3300009792	Tropical Forest Soil	ASGLQVLQLADVDGQPLITALVSYRDPALAIRCGLPPALP*
Ga0126378_106071971	3300010361	Tropical Forest Soil	GRLVASGLQVLQLANVDGQPLITALVSYRDPAIAIRCGLPAVLPN*
Ga0126378_114857041	3300010361	Tropical Forest Soil	RGRLAASGLQVLQLGEVDGQILITALVSYRDPALAVRCGLPEVLG*
Ga0126378_125587672	3300010361	Tropical Forest Soil	ERGRLAASGLQVLQLGEVAGQILITALVSYRDPALAVRCGLPEIIG*
Ga0126378_128624031	3300010361	Tropical Forest Soil	QPDEHGRLAVSGLQVLQLAEADGQILLAALVSYRDPALAVRCGLPEILG*
Ga0126377_123072062	3300010362	Tropical Forest Soil	RMVTGLQVLQLGDLEGQPVIVALVSYRDPALAIRCGWPAALPATPMA*
Ga0126381_1010124162	3300010376	Tropical Forest Soil	LAISGLQVLQLADVAGRPLITALVSYRDPALAIRCGLPARLSRR*
Ga0126381_1016759223	3300010376	Tropical Forest Soil	GLQVLQLADSGGQPLITALVSYRDPALAIRCGLLPALP*
Ga0126350_115000072	3300010880	Boreal Forest Soil	LQFGEVNGQLLITTLVSYRDPALAIRCGLPPFAA*
Ga0137389_114905232	3300012096	Vadose Zone Soil	QLADSGGEPLITALVSYRDPALAIRCGLPASLARP*
Ga0137381_117584251	3300012207	Vadose Zone Soil	QILQLSEVAGRPLISALVSYRDPAIATRCGLPEFAG*
Ga0137377_100719771	3300012211	Vadose Zone Soil	IASGLQVLQLANVDGQPLITALVSYRDPALAIRCGLPAVLPN*
Ga0137372_107428661	3300012350	Vadose Zone Soil	DPQGRLAVTGLQVLQVAETGGQPLVSALVSYRDPAIAVRCGLPEFIG*
Ga0137366_108273601	3300012354	Vadose Zone Soil	ASGLQVLQLANVDGQPLITALVSYRDPALAIRCGLPAALPN*
Ga0126369_102684564	3300012971	Tropical Forest Soil	VASGLQVLQLADVDGQPLIAALVSYRDPAIAIRCGLPAALT*
Ga0181531_101142835	3300014169	Bog	LVVSGLQVLQLGEVDGQPLVTTLVSYRDPALAVRCGLPSSLP*
Ga0137420_13595351	3300015054	Vadose Zone Soil	MSQTVKATLLVSGLQVLQLGEVDGRPLITTLVSYRDPDLAVRCGLQSSLP*
Ga0137403_112553672	3300015264	Vadose Zone Soil	GLQVLQVSDAAGQPLISALVSYRDPAIAIRCGLPEFIG*
Ga0182033_118886281	3300016319	Soil	GRLVASGLQVLQLASVDGRPLITALVSYRDPAIAIRCGLPAVLT
Ga0182035_102079353	3300016341	Soil	GRLAASGLQVLQLGEVDGQIVITALVSYRDPALAVRCGLPEVLG
Ga0187808_102234672	3300017942	Freshwater Sediment	LVARGLQLLTLGEVDGQVLVTALVSYRDPALAARCGLPGII
Ga0210396_103500193	3300021180	Soil	VRQLGEVDDQPLITTLVSYRDPALAIRCGLPSSLP
Ga0210387_110105191	3300021405	Soil	PDGAGRLAATGLQILQLGEVDGEPLITALVSYRDPALAARCGLPAILP
Ga0210386_107051101	3300021406	Soil	QILQLASVNGQLLITALVSYRDPAVAIRCGLPATLS
Ga0210394_116396612	3300021420	Soil	PDGAGGLVVSGLQVLQLSEVDGRPLITTVVSYRDPALAVRCGLSPSLP
Ga0210394_118110902	3300021420	Soil	DRQGHLVVSGLQVLQLGEADGQLLITRLVSYRDPALAIRCGFAT
Ga0210384_110850403	3300021432	Soil	HGRLAVSGLQVLQVNDVDGQPLITALVSYRDPSLAIRCGLPAALP
Ga0210398_103139221	3300021477	Soil	PDGEGHLVVSGLQILQLGEVRGQLLITTLVSYRDPALAIRCAFAT
Ga0126371_115332762	3300021560	Tropical Forest Soil	QVLQLTTVDGQPLITALVSYRDPALAIRCGLPAVLP
Ga0126371_117473292	3300021560	Tropical Forest Soil	LQVLQLGEVDGQILITALISYRDPGLAVRCGLPEVLG
Ga0126371_122957883	3300021560	Tropical Forest Soil	SGLQLLAIGDVNGDPVITALVSYRDPAIAVRCGLPAIIDPAR
Ga0126371_134737392	3300021560	Tropical Forest Soil	TYQPDEHGRLAVDGLQVLQLSEVAGQILIAVLVSYRDPALAVRCGLPEILG
Ga0242665_102874701	3300022724	Soil	VLQLARVNGQPLIAALVSYRDPVLVIRCGLRATLS
Ga0207693_109199631	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	GVQILQLADVDGQPLITALVSYRDPGLAVRCGLPAEVAQLS
Ga0207664_112673361	3300025929	Agricultural Soil	LQLANVDGQPLITALVSYRDPSLAVRCGLPAELPLTPG
Ga0209871_10286901	3300026217	Permafrost Soil	QVLQLAETGGQVLITALVSYRDPGLVSRCGLPSSLPLPAPMSRDE
Ga0209647_12988912	3300026319	Grasslands Soil	VSGLQILQLDNLGSQPLITVLVSYRDPALAIRCGLPPALP
Ga0257155_10909932	3300026481	Soil	RLAVSGLQVLQLADSGGEPLITALVSYRDPALAIRCGLPAALP
Ga0257168_11429051	3300026514	Soil	SGLQVLQIADVAGEPLITALVSYRDPALAIRCGLPPEWG
Ga0208366_10047213	3300027073	Forest Soil	LQVLQLAEVNDQLLITTLVSYRDPAIAIRCGMPAVLQ
Ga0209466_11162432	3300027646	Tropical Forest Soil	YQPDEHGRLAASGLQVLQLGEVAGQVLITALVSYRDPALAVRCGLPEILG
Ga0209624_104254863	3300027895	Forest Soil	AVSGLQVLQLGEVNGQLLITTLVSYRDPALAIRCGLPPFAA
Ga0302177_100526361	3300030053	Palsa	QLGEVDGQVLITLLVSYRDPALASRCGLPSSLPVSR
Ga0311353_108497231	3300030399	Palsa	LQILQLGEVDGQVLITSLVSYRDPALASRCGLPSSLPVSR
Ga0311353_110900091	3300030399	Palsa	GDGRPAVTGLQILQLAWVDGKPLISALASYRDPALAVRCGLPYFIT
Ga0311356_111725322	3300030617	Palsa	DGRPAVTGLQILQLAWVDGKPLISALASYRDPALAVRCGLPDLIT
Ga0302324_1007014804	3300031236	Palsa	LQILQLGEVDGQVLITLLVSYRDPALASRCGLPSSLPVSR
Ga0318516_103464592	3300031543	Soil	PDERGRLAASGLQVLQLAEVDGQILITALVSYRDPALAVRCGLPGVLG
Ga0318534_103645601	3300031544	Soil	LVASGLQVLQLADLDGQLLITALVSYRDPGLAIRCGLPAALP
Ga0318538_100583412	3300031546	Soil	RGRLAASGLQVLQLGEEAGQILITALVSYRDPALAVRCGLPEIIG
Ga0318538_102239011	3300031546	Soil	VTGLQVLQLADTGGQPLITALASYRDPALAIRCGMPALLQ
Ga0318538_103664101	3300031546	Soil	LQVLHLADSGGQPLITALVSYRDPALAIRCGLPPVLP
Ga0318528_104549832	3300031561	Soil	GRLAVSGLQILQLGEVHGQILIAALVSYRDPALAVRCGLPEILG
Ga0318528_104999532	3300031561	Soil	GRLVASGLQVLQLGEVDGQVLVTALVSYRDPALVARCGLPEVL
Ga0318515_104666486	3300031572	Soil	PDGRGRLVASGLQVLQLASVDGRPLITALVSYRDPAIAIRCGLPAVLT
Ga0318542_100663831	3300031668	Soil	HLVVSGLQVLQLGEVDGQLLITTLVSYRDPALAIRCGLPPRLP
Ga0318574_103440421	3300031680	Soil	TGLQVLQLADTGGQPLITALASYRDPALAIRCGMPALLQ
Ga0318572_100703224	3300031681	Soil	QGRLVASGLQVLQLADVDGQPLITALVSYRDPALAIRCGLPPALP
Ga0318496_104025421	3300031713	Soil	LVASGLQVLQLADVDGQPLITALVSYRDLAIAIRCGLPPALPD
Ga0318493_103722461	3300031723	Soil	KGHLIVSGLQVLQLGEVNGQLLITTLVSYRDPVLAIRCGLPLRLP
Ga0318500_103366443	3300031724	Soil	VLQLGEVNGQLLITTLVSYRDPALAIRCGLPPRLP
Ga0318501_104736191	3300031736	Soil	LQVLHLADSGGQPLITALVSYRDPALAIRCGLPPALP
Ga0306918_108283431	3300031744	Soil	QVLHLADSGGQPLITALVSYRDPALAIRCGLPPALP
Ga0306918_108562072	3300031744	Soil	PDERGRLAASGLQVLQLGEVNGQILITALVSYRDPALAVRCGLPEVIG
Ga0306918_110921962	3300031744	Soil	DGHGRLAASGLQVLQLTTVGGQPLITALVSYRDPALAIRCGLPATLS
Ga0318502_107766422	3300031747	Soil	QVLQLGEVDGQILITALVSYRDPALAVRCGLPEVLG
Ga0318492_103204571	3300031748	Soil	RGRLAASGLQVLQLAEVDGQILITALVSYRDPALAVRCGLPGVLG
Ga0318535_104859902	3300031764	Soil	YQPDERGRLAASGLQVLQLGEVNGQILITALVSYRDPALAVRCGLPEVIG
Ga0318554_102136631	3300031765	Soil	GAGKAEDGRLVASGLLVLQLAEMDGQVLVTALVSYRDPALAARCGLPAVI
Ga0318509_102974374	3300031768	Soil	VLHLADSGGQPLITALVSYRDPALAIRCGLPPVLP
Ga0318521_106940282	3300031770	Soil	VLQLGEADGQILVAALVSYRDPGLAVRCGLPEILG
Ga0318546_102071421	3300031771	Soil	VASGLQVLQLASVDGRPLITALVSYRDPAIAIRCGLPAVLT
Ga0318546_109399142	3300031771	Soil	SLAVTGLQVLQLADTSGQPLITALASYRDPALAIRCGMPAVLQ
Ga0318543_101182442	3300031777	Soil	ERGRLAASGLQVLQLGEVDGQILITALVSYRDPALAVRCGLPAILG
Ga0318498_103443351	3300031778	Soil	VLQLTSVGGQPLITALVSYRDPALAIRCGLPATLS
Ga0318566_106289211	3300031779	Soil	PEGRLVVSGLQVLQLADTGGQPLITALVSYRDAGLAVRCGMPAMQAM
Ga0318529_105391762	3300031792	Soil	HGLAASGLQVLQLGEVDGQILITALVSYRDPALAVRCGLPEVLG
Ga0318567_105535761	3300031821	Soil	QGLAASGLQVLQLGEADGQILVAALVSYRDPGLAVRCGLPEILG
Ga0310917_104084622	3300031833	Soil	SGLQILQLGEVHGQILIAALVSYRDPALAVRCGLPEILG
Ga0318517_100659672	3300031835	Soil	QDLQLGEEAGQILITALVSYRDPALAVRCGLPEIIG
Ga0318517_101759162	3300031835	Soil	EPGPEGSLAVTGLQVLQLADTSGQPLITALASYRDPALAIRCGMPAVLQ
Ga0318511_103172723	3300031845	Soil	QGRLIASGLQVLHLADSGGQPLITALVSYRDPALAIRCGLPPVLP
Ga0318527_104380362	3300031859	Soil	EPDTEGRLAVSGLQILQLADAGGQPLITALASYRDPALAIRCGMPAVLQ
Ga0318495_101715481	3300031860	Soil	PDGQGRLAASGLQVLQLAVIDGQLLITALVSYRDPALAIRCGLPAALP
Ga0318495_105533231	3300031860	Soil	QGRLVVSGLQVLQLADLDGQLLITALVSYRDPGLAIRCGLPAALP
Ga0306919_110764552	3300031879	Soil	TGLQVLQLADTSGQPLITALASYRDPALAIRCGMPAVLQ
Ga0306925_106855145	3300031890	Soil	DGRGRLVASGLQVLQLASVDGRPLITALVSYRDPAIAIRCGLPAVLT
Ga0318536_104744173	3300031893	Soil	ASGLQVLQLADVDGQLLITALVSYRDPALAIRCGLPAVLS
Ga0318522_101904671	3300031894	Soil	LIASGLQVLQLADVDGQPLITALVSYRDPALAIRCGLPAVLS
Ga0318551_107315551	3300031896	Soil	VLQLADSGGQPLITALVSYRDPALAIRCGLPPALP
Ga0318551_108255481	3300031896	Soil	LQVLQLGEVNGQLLITTLVSYRDPALAIRCGLPPRLP
Ga0318520_103982732	3300031897	Soil	PDGRGRLVASGLQVLQLADSGGQPLITALVSYRDPALAIRCGLPAALP
Ga0306921_120669761	3300031912	Soil	ASGLQVLQLADLDGQLLITALVSYRDPGLAIRCGLPAALP
Ga0310916_109751552	3300031942	Soil	GRLAASGLQVLQLGEVDGQILITALVSYRDPALAVRCGLPEVLG
Ga0310916_116075332	3300031942	Soil	VASGLQVLQLADVDGHPLITALVSYRDPALAIRCGLPPTLP
Ga0310913_102239391	3300031945	Soil	ERGRLAASGLQVLQLAEVDGQILITALVSYRDPALAVRCGLPGVLG
Ga0310913_105493512	3300031945	Soil	SGLLVLQLGEVDGRVLVTALVSYRDPALAVRCGLPEVI
Ga0310910_105476051	3300031946	Soil	DHGRLAASGLQVLQLGEVDGHILIVALVSYRDPALAVRCGLPGILG
Ga0306926_114345002	3300031954	Soil	QPDERGRLAASGLQVLQLGEVDGQILITALVSYRDPALAVRCGLPAILG
Ga0318563_101563492	3300032009	Soil	YQPDERGRLAASGLQVLQLGEEAGQILITALVSYRDPALAVRCGLPEIIG
Ga0318569_101329311	3300032010	Soil	SGLQVLQLGEVDGQILITALVSYRDPALAVRCGLPAILG
Ga0318507_102035552	3300032025	Soil	VLQLADTSGQPLITALASYRDPALAIRCGMPAVLQ
Ga0318556_105718391	3300032043	Soil	RLVASGLLVLQLAEMDGQVLVTALVSYRDPALAARCGLPAVI
Ga0318558_104259261	3300032044	Soil	DERGRLVASGLQVLQLGEVDGQILITALVSYRDPALAVRCGLPEVLS
Ga0318570_104292541	3300032054	Soil	DEHGRLVASGLLVLQLGEVDGRVLVTALVSYRDPALAVRCGLPEVI
Ga0318533_105534731	3300032059	Soil	YQPDERGRLAASGLQVLQLGEVDGQILITALVSYRDPALAVRCGLPAILG
Ga0318504_101037782	3300032063	Soil	TVTGLQVLQLADTGGQPLITALASYRDPALAIRCGMPALLQ
Ga0318510_103432252	3300032064	Soil	EGSLAVTGLQVLQLADTSGQPLITALASYRDPALAIRCGMPAVLQ
Ga0318513_100769289	3300032065	Soil	SGLQVLQLASVDGRPLITALVSYRDPAIAIRCGLPAVLT
Ga0318524_103139593	3300032067	Soil	LQVLHLADSGGQPLITALVSYRDPALAIRCGLPPTLP
Ga0306924_111664462	3300032076	Soil	GRLVASGLLVLQLAEMDGQVLVTALVSYRDPALAARCGLPAVI
Ga0306920_1034250671	3300032261	Soil	LQVLQLADVGGRPLITALVSYRDPALAIRCGLPAALPS