Metagenome / Metatranscriptome Family F070511

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F070511
Family Type	Metagenome / Metatranscriptome
Number of Sequences	123
Average Sequence Length	54 residues
Representative Sequence	VPRHGLRGVGGLKQLPKPVCQQFDGLPQGAELPNPDYRDGSVQVKRWGTQY
Number of Associated Samples	115
Number of Associated Scaffolds	123

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	14.17 %
% of genes near scaffold ends (potentially truncated)	78.86 %
% of genes from short scaffolds (< 2000 bps)	85.37 %
Associated GOLD sequencing projects	111
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.15

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (92.683 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (10.569 % of family members)
Environment Ontology (ENVO)	Unclassified (23.577 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (40.650 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 0.00% Coil/Unstructured: 100.00%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.15
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.15
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 123 Family Scaffolds
PF07883	Cupin_2	8.94
PF14907	NTP_transf_5	2.44
PF02633	Creatininase	2.44
PF13610	DDE_Tnp_IS240	1.63
PF01042	Ribonuc_L-PSP	1.63
PF03781	FGE-sulfatase	1.63
PF00266	Aminotran_5	1.63
PF13563	2_5_RNA_ligase2	1.63
PF13508	Acetyltransf_7	1.63
PF14378	PAP2_3	0.81
PF00141	peroxidase	0.81
PF05988	DUF899	0.81
PF01970	TctA	0.81
PF00348	polyprenyl_synt	0.81
PF11535	Calci_bind_CcbP	0.81
PF12704	MacB_PCD	0.81
PF08241	Methyltransf_11	0.81
PF05649	Peptidase_M13_N	0.81
PF07690	MFS_1	0.81
PF02874	ATP-synt_ab_N	0.81
PF02834	LigT_PEase	0.81
PF00370	FGGY_N	0.81
PF08335	GlnD_UR_UTase	0.81
PF03807	F420_oxidored	0.81
PF03466	LysR_substrate	0.81
PF14588	YjgF_endoribonc	0.81
PF03061	4HBT	0.81
PF05598	DUF772	0.81
PF00106	adh_short	0.81
PF00912	Transgly	0.81
PF00196	GerE	0.81
PF00581	Rhodanese	0.81
PF12802	MarR_2	0.81
PF00583	Acetyltransf_1	0.81
PF08546	ApbA_C	0.81
PF14022	DUF4238	0.81
PF08713	DNA_alkylation	0.81
PF13602	ADH_zinc_N_2	0.81
PF12127	FloA	0.81
PF02311	AraC_binding	0.81
PF00848	Ring_hydroxyl_A	0.81
PF00211	Guanylate_cyc	0.81
PF00378	ECH_1	0.81
PF01323	DSBA	0.81
PF04224	DUF417	0.81

COG ID	Name	Functional Category	% Frequency in 123 Family Scaffolds
COG1402	Creatinine amidohydrolase/Fe(II)-dependent FAPy formamide hydrolase (riboflavin and F420 biosynthesis)	Coenzyme transport and metabolism [H]	2.44
COG0251	Enamine deaminase RidA/Endoribonuclease Rid7C, YjgF/YER057c/UK114 family	Defense mechanisms [V]	1.63
COG1262	Formylglycine-generating enzyme, required for sulfatase activity, contains SUMF1/FGE domain	Posttranslational modification, protein turnover, chaperones [O]	1.63
COG4638	Phenylpropionate dioxygenase or related ring-hydroxylating dioxygenase, large terminal subunit	Inorganic ion transport and metabolism [P]	1.63
COG5009	Membrane carboxypeptidase/penicillin-binding protein	Cell wall/membrane/envelope biogenesis [M]	0.81
COG0142	Geranylgeranyl pyrophosphate synthase	Coenzyme transport and metabolism [H]	0.81
COG4953	Membrane carboxypeptidase/penicillin-binding protein PbpC	Cell wall/membrane/envelope biogenesis [M]	0.81
COG4912	3-methyladenine DNA glycosylase AlkD	Replication, recombination and repair [L]	0.81
COG4312	Predicted dithiol-disulfide oxidoreductase, DUF899 family	General function prediction only [R]	0.81
COG3590	Predicted metalloendopeptidase	Posttranslational modification, protein turnover, chaperones [O]	0.81
COG3333	TctA family transporter	General function prediction only [R]	0.81
COG3059	Reactive chlorine resistance protein RclC/YkgB, DUF417 family	Defense mechanisms [V]	0.81
COG2844	UTP:GlnB (protein PII) uridylyltransferase	Signal transduction mechanisms [T]	0.81
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	0.81
COG1893	Ketopantoate reductase	Coenzyme transport and metabolism [H]	0.81
COG1784	TctA family transporter	General function prediction only [R]	0.81
COG1514	RNA 2',3'-cyclic phosphodiesterase (2'-5' RNA ligase)	Translation, ribosomal structure and biogenesis [J]	0.81
COG0744	Penicillin-binding protein 1B/1F, peptidoglycan transglycosylase/transpeptidase	Cell wall/membrane/envelope biogenesis [M]	0.81
COG0376	Catalase (peroxidase I)	Inorganic ion transport and metabolism [P]	0.81

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	92.68 %
Unclassified	root	N/A	7.32 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	92.68 %
Unclassified	root	N/A	7.32 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	92.68 %
Unclassified	root	N/A	7.32 %

Name	Rank	Taxonomy	Distribution
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	26.02 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	22.76 %
Unclassified	root	N/A	7.32 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	2.44 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	26.02 %
Unclassified	root	N/A	7.32 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	5.69 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	5.69 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2.44 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	1.63 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.81 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.81 %

Name	Rank	Taxonomy	Distribution
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	25.20 %
Unclassified	root	N/A	7.32 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	5.69 %
Rhodocyclales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales	1.63 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	1.63 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.81 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.81 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.81 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	25.20 %
Unclassified	root	N/A	7.32 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	5.69 %
Rhodocyclaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Rhodocyclaceae	1.63 %
unclassified Bryobacterales	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales	0.81 %
Solibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	0.81 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.81 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.81 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.81 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	25.20 %
Unclassified	root	N/A	7.32 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	5.69 %
Rhodocyclaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Rhodocyclaceae	1.63 %
Bryobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	0.81 %
Candidatus Solibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter	0.81 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.81 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.81 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.81 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	25.20 %
Unclassified	root	N/A	7.32 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	5.69 %
Rhodocyclaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Rhodocyclaceae	1.63 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.81 %
unclassified Candidatus Solibacter	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → unclassified Candidatus Solibacter	0.81 %
Bryobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	0.81 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.81 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.81 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	25.20 %
Unclassified	root	N/A	7.32 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	5.69 %
Rhodocyclaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Rhodocyclaceae	1.63 %
Candidatus Solibacter sp.	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → unclassified Candidatus Solibacter → Candidatus Solibacter sp.	0.81 %
Bradyrhizobium sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	0.81 %
Bryobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	0.81 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.81 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.81 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459002\|F0B48LX02HL7BB	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	526	Open in IMG/M
2170459002\|FZY7DQ102JB9ZQ	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	529	Open in IMG/M
2170459006\|GBPF9FW01A90JP	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	525	Open in IMG/M
2170459010\|GIO7OMY01ARO7Y	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	511	Open in IMG/M
2189573000\|GPBTN7E01DKPKK	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	520	Open in IMG/M
3300000955\|JGI1027J12803_102753559	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	547	Open in IMG/M
3300003152\|Ga0052254_1006452	All Organisms → cellular organisms → Bacteria	780	Open in IMG/M
3300005166\|Ga0066674_10449786	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	588	Open in IMG/M
3300005171\|Ga0066677_10685080	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	574	Open in IMG/M
3300005176\|Ga0066679_10579469	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	731	Open in IMG/M
3300005181\|Ga0066678_10531060	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	781	Open in IMG/M
3300005329\|Ga0070683_100078071	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Rhodocyclaceae	3097	Open in IMG/M
3300005332\|Ga0066388_103242376	All Organisms → cellular organisms → Bacteria	831	Open in IMG/M
3300005336\|Ga0070680_100109181	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Rhodocyclaceae	2302	Open in IMG/M
3300005354\|Ga0070675_100411280	All Organisms → cellular organisms → Bacteria → Proteobacteria	1208	Open in IMG/M
3300005434\|Ga0070709_10906033	All Organisms → cellular organisms → Bacteria → Proteobacteria	697	Open in IMG/M
3300005437\|Ga0070710_10310927	All Organisms → cellular organisms → Bacteria	1031	Open in IMG/M
3300005437\|Ga0070710_10311312	All Organisms → cellular organisms → Bacteria → Proteobacteria	1031	Open in IMG/M
3300005440\|Ga0070705_101330450	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	596	Open in IMG/M
3300005458\|Ga0070681_11277006	All Organisms → cellular organisms → Bacteria	657	Open in IMG/M
3300005518\|Ga0070699_101953456	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	536	Open in IMG/M
3300005535\|Ga0070684_100030401	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	4588	Open in IMG/M
3300005553\|Ga0066695_10010919	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	4759	Open in IMG/M
3300005561\|Ga0066699_10103797	All Organisms → cellular organisms → Bacteria	1879	Open in IMG/M
3300005841\|Ga0068863_101019892	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	830	Open in IMG/M
3300005842\|Ga0068858_101036237	Not Available	804	Open in IMG/M
3300006031\|Ga0066651_10715551	All Organisms → cellular organisms → Bacteria	538	Open in IMG/M
3300006032\|Ga0066696_10991126	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	534	Open in IMG/M
3300006172\|Ga0075018_10621353	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	576	Open in IMG/M
3300006755\|Ga0079222_11162773	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	686	Open in IMG/M
3300006794\|Ga0066658_10053396	All Organisms → cellular organisms → Bacteria	1746	Open in IMG/M
3300009098\|Ga0105245_10723316	All Organisms → cellular organisms → Bacteria	1030	Open in IMG/M
3300009176\|Ga0105242_11159172	Not Available	790	Open in IMG/M
3300009177\|Ga0105248_10574802	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1272	Open in IMG/M
3300009519\|Ga0116108_1230117	All Organisms → cellular organisms → Bacteria	542	Open in IMG/M
3300009640\|Ga0116126_1236702	All Organisms → cellular organisms → Bacteria	576	Open in IMG/M
3300009645\|Ga0116106_1159426	All Organisms → cellular organisms → Bacteria	721	Open in IMG/M
3300010159\|Ga0099796_10585374	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	503	Open in IMG/M
3300010322\|Ga0134084_10415204	All Organisms → cellular organisms → Bacteria	528	Open in IMG/M
3300010335\|Ga0134063_10149246	All Organisms → cellular organisms → Bacteria	1083	Open in IMG/M
3300010337\|Ga0134062_10236620	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	845	Open in IMG/M
3300010339\|Ga0074046_10562517	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	677	Open in IMG/M
3300010361\|Ga0126378_10487360	All Organisms → cellular organisms → Bacteria	1348	Open in IMG/M
3300010379\|Ga0136449_102480812	Not Available	744	Open in IMG/M
3300010880\|Ga0126350_10889272	All Organisms → cellular organisms → Bacteria → Proteobacteria	2177	Open in IMG/M
3300011120\|Ga0150983_15466805	All Organisms → cellular organisms → Bacteria	651	Open in IMG/M
3300012198\|Ga0137364_10040709	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	3037	Open in IMG/M
3300012203\|Ga0137399_10224263	All Organisms → cellular organisms → Bacteria	1534	Open in IMG/M
3300012208\|Ga0137376_11349065	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	604	Open in IMG/M
3300012351\|Ga0137386_10215056	All Organisms → cellular organisms → Bacteria	1381	Open in IMG/M
3300012359\|Ga0137385_10253794	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	1522	Open in IMG/M
3300012363\|Ga0137390_11189336	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	710	Open in IMG/M
3300012474\|Ga0157356_1013188	All Organisms → cellular organisms → Bacteria	596	Open in IMG/M
3300012917\|Ga0137395_10220270	All Organisms → cellular organisms → Bacteria	1326	Open in IMG/M
3300012918\|Ga0137396_10613663	All Organisms → cellular organisms → Bacteria	804	Open in IMG/M
3300012923\|Ga0137359_11165627	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	658	Open in IMG/M
3300012923\|Ga0137359_11395651	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	588	Open in IMG/M
3300012929\|Ga0137404_11967545	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	545	Open in IMG/M
3300012958\|Ga0164299_10326941	All Organisms → cellular organisms → Bacteria	954	Open in IMG/M
3300012960\|Ga0164301_10281476	All Organisms → cellular organisms → Bacteria	1109	Open in IMG/M
3300012984\|Ga0164309_10457523	All Organisms → cellular organisms → Bacteria	967	Open in IMG/M
3300013105\|Ga0157369_11069772	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	825	Open in IMG/M
3300013308\|Ga0157375_12782351	All Organisms → cellular organisms → Bacteria	585	Open in IMG/M
3300014154\|Ga0134075_10354027	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	644	Open in IMG/M
3300014162\|Ga0181538_10424325	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	707	Open in IMG/M
3300014167\|Ga0181528_10433941	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	718	Open in IMG/M
3300014200\|Ga0181526_10434529	All Organisms → cellular organisms → Bacteria	832	Open in IMG/M
3300014495\|Ga0182015_10725122	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	626	Open in IMG/M
3300014501\|Ga0182024_11148627	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	913	Open in IMG/M
3300014657\|Ga0181522_10260441	All Organisms → cellular organisms → Bacteria	1026	Open in IMG/M
3300018012\|Ga0187810_10068980	All Organisms → cellular organisms → Bacteria	1356	Open in IMG/M
3300018033\|Ga0187867_10024232	All Organisms → cellular organisms → Bacteria	3863	Open in IMG/M
3300018042\|Ga0187871_10076062	All Organisms → cellular organisms → Bacteria	1965	Open in IMG/M
3300018047\|Ga0187859_10426552	All Organisms → cellular organisms → Bacteria	731	Open in IMG/M
3300018433\|Ga0066667_10996098	All Organisms → cellular organisms → Bacteria	723	Open in IMG/M
3300020062\|Ga0193724_1028559	All Organisms → cellular organisms → Bacteria	1189	Open in IMG/M
3300020582\|Ga0210395_10245949	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1344	Open in IMG/M
3300020582\|Ga0210395_10287571	All Organisms → cellular organisms → Bacteria	1236	Open in IMG/M
3300021086\|Ga0179596_10010261	All Organisms → cellular organisms → Bacteria → Proteobacteria	3044	Open in IMG/M
3300021168\|Ga0210406_10020103	All Organisms → cellular organisms → Bacteria	6242	Open in IMG/M
3300021178\|Ga0210408_10603475	All Organisms → cellular organisms → Bacteria	869	Open in IMG/M
3300021181\|Ga0210388_10114855	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2316	Open in IMG/M
3300021181\|Ga0210388_11153069	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	659	Open in IMG/M
3300021406\|Ga0210386_10519296	All Organisms → cellular organisms → Bacteria → Proteobacteria	1029	Open in IMG/M
3300021432\|Ga0210384_10536370	All Organisms → cellular organisms → Bacteria	1053	Open in IMG/M
3300021444\|Ga0213878_10002448	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	6572	Open in IMG/M
3300021477\|Ga0210398_10913300	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	703	Open in IMG/M
3300025898\|Ga0207692_10323085	All Organisms → cellular organisms → Bacteria	945	Open in IMG/M
3300025906\|Ga0207699_10192787	All Organisms → cellular organisms → Bacteria	1376	Open in IMG/M
3300025915\|Ga0207693_11177791	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	579	Open in IMG/M
3300025924\|Ga0207694_10325497	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1269	Open in IMG/M
3300025932\|Ga0207690_10066152	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2474	Open in IMG/M
3300025934\|Ga0207686_10214281	All Organisms → cellular organisms → Bacteria	1386	Open in IMG/M
3300025936\|Ga0207670_10088297	All Organisms → cellular organisms → Bacteria → Proteobacteria	2186	Open in IMG/M
3300025944\|Ga0207661_10064959	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2961	Open in IMG/M
3300026078\|Ga0207702_10378220	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1361	Open in IMG/M
3300026121\|Ga0207683_11409921	All Organisms → cellular organisms → Bacteria	644	Open in IMG/M
3300026329\|Ga0209375_1252447	All Organisms → cellular organisms → Bacteria	591	Open in IMG/M
3300026330\|Ga0209473_1119671	All Organisms → cellular organisms → Bacteria	1092	Open in IMG/M
3300026538\|Ga0209056_10689592	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	516	Open in IMG/M
3300027767\|Ga0209655_10116024	All Organisms → cellular organisms → Bacteria	891	Open in IMG/M
3300027867\|Ga0209167_10149102	All Organisms → cellular organisms → Bacteria → Proteobacteria	1226	Open in IMG/M
3300027869\|Ga0209579_10112748	All Organisms → cellular organisms → Bacteria	1443	Open in IMG/M
3300027894\|Ga0209068_10156846	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1234	Open in IMG/M
3300028145\|Ga0247663_1039089	All Organisms → cellular organisms → Bacteria	774	Open in IMG/M
3300029951\|Ga0311371_11956017	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	625	Open in IMG/M
3300030617\|Ga0311356_10683065	All Organisms → cellular organisms → Bacteria → Proteobacteria	985	Open in IMG/M
3300031234\|Ga0302325_10709728	All Organisms → cellular organisms → Bacteria	1445	Open in IMG/M
3300031236\|Ga0302324_100076179	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	5822	Open in IMG/M
3300031261\|Ga0302140_10496325	All Organisms → cellular organisms → Bacteria	949	Open in IMG/M
3300031525\|Ga0302326_11447678	All Organisms → cellular organisms → Bacteria → Proteobacteria	924	Open in IMG/M
3300031715\|Ga0307476_10302177	All Organisms → cellular organisms → Bacteria	1174	Open in IMG/M
3300031718\|Ga0307474_10243688	All Organisms → cellular organisms → Bacteria	1375	Open in IMG/M
3300031740\|Ga0307468_100626575	Not Available	884	Open in IMG/M
3300031753\|Ga0307477_10179272	Not Available	1476	Open in IMG/M
3300031753\|Ga0307477_10516790	All Organisms → cellular organisms → Bacteria	810	Open in IMG/M
3300031837\|Ga0302315_10214230	All Organisms → cellular organisms → Bacteria	1150	Open in IMG/M
3300032174\|Ga0307470_11482696	Not Available	563	Open in IMG/M
3300032783\|Ga0335079_10747972	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → unclassified Candidatus Solibacter → Candidatus Solibacter sp.	1017	Open in IMG/M
3300033829\|Ga0334854_152769	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	560	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	89.43%
Host-Associated	Host-Associated	10.57%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	76.42%
Aquatic	Environmental → Aquatic	13.01%
Plants	Host-Associated → Plants	10.57%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	69.92%
Freshwater	Environmental → Aquatic → Freshwater	11.38%
Rhizosphere	Host-Associated → Plants → Rhizosphere	7.32%
Peat	Environmental → Terrestrial → Peat	6.50%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.25%
Sediment	Environmental → Aquatic → Sediment	1.63%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	52.03%
Loam	Environmental → Terrestrial → Soil → Loam	14.63%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	10.57%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	6.50%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	5.69%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.25%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.44%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.63%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.63%
Lentic	Environmental → Aquatic → Freshwater → Lentic	0.81%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.81%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	23.58%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	14.63%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	13.01%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	12.20%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	7.32%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	6.50%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	5.69%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	2.44%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.44%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.63%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.63%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	1.63%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.63%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.63%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	0.81%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.81%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.81%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.81%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.81%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	10.57%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	9.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	8.13%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	7.32%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	4.88%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	4.88%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	4.06%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	4.06%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	4.06%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.25%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	3.25%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	2.44%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	2.44%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.44%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.63%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.63%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.63%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Sediment	0.81%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.81%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.81%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.81%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.81%
Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Bulk Soil	0.81%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.81%
Unplanted Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil	0.81%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.81%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.81%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.81%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.81%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	0.81%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.81%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.81%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.81%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.81%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.81%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.81%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	0.81%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.81%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.81%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.81%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.81%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.81%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.81%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.81%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.81%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.81%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459002	Grass soil microbial communities from Rothamsted Park, UK - March 2009 direct MP BIO 1O1 lysis 0-21 cm	Environmental	Open in IMG/M
2170459006	Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect in plug lysis (for fosmid construction) 0-10cm	Environmental	Open in IMG/M
2170459010	Grass soil microbial communities from Rothamsted Park, UK - December 2009 direct MP BIO1O1 lysis 0-9cm (no DNA from 10 to 21cm!!!)	Environmental	Open in IMG/M
2189573000	Grass soil microbial communities from Rothamsted Park, UK - July 2010 direct MP BIO 1O1 lysis 0-21cm (T0 for microcosms)	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300003152	Freshwater sediment microbial communities from Loktak Lake, India	Environmental	Open in IMG/M
3300005166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123	Environmental	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005553	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144	Environmental	Open in IMG/M
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300006031	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100	Environmental	Open in IMG/M
3300006032	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145	Environmental	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006794	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107	Environmental	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009519	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_150	Environmental	Open in IMG/M
3300009640	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_40	Environmental	Open in IMG/M
3300009645	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_40	Environmental	Open in IMG/M
3300010159	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3	Environmental	Open in IMG/M
3300010322	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015	Environmental	Open in IMG/M
3300010337	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015	Environmental	Open in IMG/M
3300010339	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010880	Boreal forest soil eukaryotic communities from Alaska, USA - C5-1 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012474	Unplanted soil (control) microbial communities from North Carolina - M.Soil.3.yng.040610	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014154	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09212015	Environmental	Open in IMG/M
3300014162	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_30_metaG	Environmental	Open in IMG/M
3300014167	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_10_metaG	Environmental	Open in IMG/M
3300014200	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_30_metaG	Environmental	Open in IMG/M
3300014495	Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014657	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_10_metaG	Environmental	Open in IMG/M
3300018012	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_5	Environmental	Open in IMG/M
3300018033	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_10	Environmental	Open in IMG/M
3300018042	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10	Environmental	Open in IMG/M
3300018047	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300020062	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2a1	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300021086	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021444	Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R02	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025924	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131 (SPAdes)	Environmental	Open in IMG/M
3300026330	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133 (SPAdes)	Environmental	Open in IMG/M
3300026538	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)	Environmental	Open in IMG/M
3300027767	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027867	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027869	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027894	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 (SPAdes)	Environmental	Open in IMG/M
3300028145	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK04	Environmental	Open in IMG/M
3300029951	III_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300030617	II_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300031261	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E1_1	Environmental	Open in IMG/M
3300031525	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031837	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N3_1	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300033829	Peat soil microbial communities from Stordalen Mire, Sweden - 715 P2 1-5	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
E1_03402040	2170459002	Grass Soil	VSRHGLLGVGSLKQLPKPVCQQFDGLPQGAEWPNPDYRDGSVQVKRWGTQYFHGIDRMIPGNKASG
E1_03986070	2170459002	Grass Soil	VSRHGLLGVGSLKQLPKPVCQQFDGLPQGAEWPNPDYRDGSVQV
L01_00467490	2170459006	Grass Soil	VSRHGLLGVGSLKQLPKPVCQQFDGLPQGAEWPNPDYRDGSVQVKRWGTQYFH
F62_01761590	2170459010	Grass Soil	VSRHGLLGVGSLKQLPKPVCQQFDGLPQGAEWPNPDYRDG
N55_08787660	2189573000	Grass Soil	VSRHGLRGVGSLKQLPKPVCQQFDGLPQGAEWPNPDYRDGSVQVKRWGTQYFHGIDRMIPGNKASG
JGI1027J12803_1027535592	3300000955	Soil	MPRHGVPCVGCLKQLPQPVCQLFDGLSQGAELPNPDYRDGSVQ
Ga0052254_10064521	3300003152	Sediment	VSRHGLLGVGRLEQLPKPVFQQFEGLFQCAELSNPDYRDGSVQVE
Ga0066674_104497862	3300005166	Soil	VPRHGLLGVGSLKQLPKPVCQQFDGLPQGAELPNPDYRDGSVQVKRWGTQYFHGIDRMIP
Ga0066677_106850801	3300005171	Soil	VPRHGLRGVRCLKQLPKPVCQQFDGLPQGAELRNPDYRDGSVQFKRWGMQY
Ga0066679_105794692	3300005176	Soil	VLRHGLRGVGCLKQLPKPVCQQFDGLPQGAELRNPDYRDGSVQF
Ga0066678_105310602	3300005181	Soil	VSRHGLLGVGSLKQLPKPVCQQSDGLPQGAELPNPDYRDGSVQVKRWGTQYFHGIDRMIPGNKA
Ga0070683_1000780711	3300005329	Corn Rhizosphere	VPRHGLRGVGCLKQLPKPVFQEFDSFLQGAELSNPDYRDGSVQLKRWGTQYFHAIDGTIPGDEASG*
Ga0066388_1032423762	3300005332	Tropical Forest Soil	VSRHGLPGVGSLKQMPKPMFQQSDGPLQGAELSNPHYRDGHSQIK*
Ga0070680_1001091814	3300005336	Corn Rhizosphere	VPRHGLRGVGCLKQLPKPVFQEFDGFLQGAELSDPDYRDGSVQLKRWGT
Ga0070675_1004112801	3300005354	Miscanthus Rhizosphere	VPRHGLRGVDCLKQLPKPVFQQFDGLPQGAELSNSDYRDGSVQVKR
Ga0070709_109060332	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	VHRHGLRGVGCVKQLPKPVFQQFDGLPQGAELPNPDDRDGSVQVKRWGTQYFHGIDRMIPGNK
Ga0070710_103109273	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	VSRHGLLGVGSLKQLPKPVCQQFDGLPQGAELPNPDYRDGSVQVKRWGTQYFHGIDRMIP
Ga0070710_103113122	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	VPRHGIRGVGCLKQLPKPVCQQFDGLLQRAELSNPDYRDGSVQVKRWGTQYFHAIDGTIPGNEAGG*
Ga0070705_1013304502	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	VWAHGSPIRGHTSAVARHGLPCVGCLKQVPKPICQLFDGLPQGAELPDLDYRDGSVQLKRRGTQYFHGIDSMTPGNKASG*
Ga0070681_112770062	3300005458	Corn Rhizosphere	VPRHGLRGVGCLKQLPKPVFQQFDGLPQGAELSNPDYRDGSVQVKRWGTQ
Ga0070699_1000237511	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	VWAHRSPIRGHTSAVARHGLPCVGCLKQVPKPICQLFDGLPQGAELPDLDYRDGSVQLKRRGTQYFHGIDSMTPG
Ga0070699_1019534562	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	VARHGLPCVGCLKQVPKSICQLFDGLPQGAELPDLDYRDGSVQLKRRGTQYFHGIDSMTP
Ga0070684_1000304011	3300005535	Corn Rhizosphere	VPRHGLRGVGCLKQLPKPVFQEFDGFLQGAELSNPDYRDGSVQLKRWGTQYFHAIDGTIPGDEASG*
Ga0066695_100109191	3300005553	Soil	VSRHGLLGVGSLKQLPKPVCQQSDGLPQGAELPNPDYRDGSVQ
Ga0066699_101037971	3300005561	Soil	LVPRHGLRGVGCLKQLPKPVCQQFDGLPQGAELRNPDYRDGSVQF
Ga0068863_1010198922	3300005841	Switchgrass Rhizosphere	VPRHGLLGVGSLKQLPKPVCQQFEGLPQSAELPNPDYRDGSVQVKRWGTQYFHGIDRMIP
Ga0068858_1010362372	3300005842	Switchgrass Rhizosphere	VPRDGLRGVGCLEQLPKPVFQQFDGLPQGTQLPSPDYRDGRVQVKR
Ga0066651_107155511	3300006031	Soil	VPRHGLLGVGSLKQLPKPVCQQFDGLPQGAELPNPDYRDGSVQ
Ga0066696_109911262	3300006032	Soil	VPRHGLRGVGCLKQLPKPVCQQFDGLPQGAELRNPDYRDGSVQFKRWGMQYFHGID*
Ga0075018_106213532	3300006172	Watersheds	VSRHWLLGGGSLKQLPKPVCQQFDGLPQGAELPNPDYRDGSVQVKRW
Ga0079222_111627732	3300006755	Agricultural Soil	VPRQGLRGVDCLKQLPKPVFEQFDGLPQGAELSNPDYRDGSVQVKR
Ga0066658_100533961	3300006794	Soil	LVPRHGLRGVGCLKQLPKPVCQQFDGLPQGAELRNPDYRDGSVQFKRWGMQ
Ga0105245_107233161	3300009098	Miscanthus Rhizosphere	VPCHGLWDVVRLEQLPKPVFKQFDGLPQRPELSKPDYRDGSAQVERW
Ga0105242_111591721	3300009176	Miscanthus Rhizosphere	VSRHGLLGVGSLKQLPKPVCQQFDGLPQGAELPNSDYRDGSVQVKRRG
Ga0105248_105748021	3300009177	Switchgrass Rhizosphere	VPRHGLRGVDCLKQLPKPVFQQFDGLPQGAELSNSDYRDGSVQVKRRGAQY
Ga0116108_12301171	3300009519	Peatland	PPIRAHTSSLPRHGLRGVGCVKQLPKPVFQQFDGLPHGTELRHPDYRDGSVQVKRWRMQYFHGIDGTIPGNKASG*
Ga0116126_12367022	3300009640	Peatland	VPRHGLQGAGCLKQLPKPVFQQFDGLPQGAELPNPDYRDGSVQVKRRGMQYFHGIDGMIPGNKASG*
Ga0116106_11594262	3300009645	Peatland	VPRHGLRGVGGLKQLPKPVCQQFDGLPQCAELPNPDYRDGSVQVKRWRMQYFHGIDGTIPGNKASG*
Ga0099796_105853741	3300010159	Vadose Zone Soil	VSRHGLLGVGSLKQLPKPVCQQSDGLSQGAELPNPDYRDGSVQVKR
Ga0134084_104152042	3300010322	Grasslands Soil	VPRHGLLGVGSLKQLPKPVCQQFDGLPQGAELPNPDYRDGSVQV
Ga0134063_101492461	3300010335	Grasslands Soil	VPRHGLGGVGSLKQLPKPVFQQFDGLPQGAELPNLDYRDG
Ga0134062_102366201	3300010337	Grasslands Soil	VSRHGLLGVGSLKQLPKPVCQQSDGLPQGAELPNPDYRDGSVQVKRWGTQYFHGID
Ga0074046_105625172	3300010339	Bog Forest Soil	MPRHGLRGVGCLKQLPKPVCQHFDGLPQGAELPNPDYRDGSVQVKR
Ga0126378_104873602	3300010361	Tropical Forest Soil	VPRHGLRGVGCLKQLPKPVFQQVDGLPQGAELSNPDYRDGSAQVKRWGTQYFHAIDGTIPGNEASG*
Ga0134128_101721321	3300010373	Terrestrial Soil	VRRHGLRGVGCLKQLTKTVFQQFDGLLQGAELRSPDYRDGRVQVKSRRTQDFHGADRIIPNNKARRQQPDTIT
Ga0136449_1024808122	3300010379	Peatlands Soil	MPRHGLRGVGCLKQLPKPVFQQFDGLPQGAKLPSPD
Ga0126350_108892721	3300010880	Boreal Forest Soil	VPRHGLRGVGCLKQLPKPVFQQFDGLPQGAELSNPDYRDGSVQVKRWGTQYFHAID
Ga0150983_154668051	3300011120	Forest Soil	VPRHGLSCVGCLKQVPKPVCQLLDGLPQGAELPNADYRDGSVQVKRR
Ga0137364_100407094	3300012198	Vadose Zone Soil	VSRHGLLGVGSLKQLPKPVCQQFDGLPQGAELPNPDYRDGSVQVKRWGTQYFHGIDRMIPGNK
Ga0137399_102242632	3300012203	Vadose Zone Soil	VPRHGLRGVGGLKQLPKPVCQQFDGLPQGAELPNPDYRDGSVQVKRWGTQYFHGIDRMIPGNKA
Ga0137376_113490651	3300012208	Vadose Zone Soil	VSRHGLLGVGSLKQLPKPVCQQFDGLPQGAELPNPDYRDGSVQV
Ga0137386_102150561	3300012351	Vadose Zone Soil	VSRHGLLGIGSLKQLPKPACQQFDGLPQGAEFPNPDHRDGSVQVKRWGTQYFHGID
Ga0137385_102537942	3300012359	Vadose Zone Soil	VPRHGLRGVGGLKQLPKTVCQQFDGLPQGAELPNPDYRDGSVQV
Ga0137390_111893361	3300012363	Vadose Zone Soil	VPRHGLRGVGGLKQLPKPVCQQFDGLPQGAELPNPDYRDGSVQVKRWGTQYFHGIDRMIP
Ga0157356_10131881	3300012474	Unplanted Soil	VSRHGLLGVGSLKQLPKPVCQQFDGLSQGAELPNPNYRDG
Ga0137395_102202701	3300012917	Vadose Zone Soil	VPRHGLRGVGGLKQLPKPVCQQFDGLPQGAELPNPDYRDGSVQVKRWGTQYFQATDGTIPGNEASG*
Ga0137396_106136631	3300012918	Vadose Zone Soil	VGCLKQLPKPVCQQFDGLPQGAELPNPDYRDGSVQVKRWGTQDL
Ga0137359_111656271	3300012923	Vadose Zone Soil	VPRHGLLGVGSIKQLPKPVCQQFDGLPQSAELPNPDYRDGSVQVKRWGTQYFHGIDRMIPGNKA
Ga0137359_113956511	3300012923	Vadose Zone Soil	VSRHGLLGVGSLKQLPKTVCQQFDGLPQGAELPNPDYRDGSVQVKRWGTQYFHAIDRMIPGNKA
Ga0137404_119675451	3300012929	Vadose Zone Soil	VPRHGLRGVGGLKQLPKPVCQQFDGLPQGAELPNPDYRDGSVQVKRWGTQYFHGIDRMIPGNK
Ga0164299_103269411	3300012958	Soil	VPRHGLRRVGCLEQLPKPVFQQFDGLPQGAELSNPDYRDGSVQVKRWGTQYCHAIDGTIPGNEA
Ga0164301_102814761	3300012960	Soil	VPRHGLRGVGCLKQLPKPVCQQFDGLPQGAELPNPDYRDGSVQVKR
Ga0164309_104575233	3300012984	Soil	VSRHGLLGVGSLKQLPKPVCQQFDGLPQGAELPNPDYRDRSVQVKRWGTQYFHGI
Ga0157369_110697722	3300013105	Corn Rhizosphere	VPRHGLRGVGCLKQLPKPVFQEFDGFLQGAELSDPDYRDGSVQLKRWGTQYFHAIDGTIPGDEASG*
Ga0157375_127823511	3300013308	Miscanthus Rhizosphere	VSRHGLLGVGSLKQLPKPVCQQFDGLPQGAELPNPNYRDGSVQLKRWET*
Ga0134075_103540271	3300014154	Grasslands Soil	VPRHGLRGVGGLKQLPKPVCQQFDGLPQGAELPNPDYRDGSVQVKRWGTQY
Ga0181538_104243251	3300014162	Bog	VPRHGLRGVGSLKQLPKPVCQQFDGLPQGAELTNPDYRDGPVQVKRWGAQYFHGIDRMIPGNKASWQQPDTITGLN
Ga0181528_104339412	3300014167	Bog	VPRYGLRGVACLKQLPKPVFQLFDGLPQSTELPDPDYRDGRVQVERWGTQYFHGVD
Ga0181526_104345291	3300014200	Bog	MPRHGLRCVGCLKQLPKPVFQQFDGLPQGAKLPSPDYRDGRV
Ga0182015_107251221	3300014495	Palsa	VLRGVGGLKQLPKPVCQQFDGLPQGAELPNPDYRDG
Ga0182024_111486272	3300014501	Permafrost	VPRNGFRGVGCPKQLPKPVFQQFDGLPQGAELPNPDYRDGSVQVKQWGTQDFHGIDRMIPGNKASG*
Ga0181522_102219711	3300014657	Bog	VPRHGLRGVGCLKQLPKPVFQQFDGLPQGAELPNPDYRDGPVQVKRWGTQYFQGIDRMIPGNKASRQQPDTITGLNER*
Ga0181522_102604413	3300014657	Bog	VPHHGLRGVGCLKQLPKPVFQQFDGLPQGAELPNPDDRDEPVQVKRWRTQYFH
Ga0187810_100689802	3300018012	Freshwater Sediment	VARHGLRGVGCLKQLPKPVFQQFDGFPQGAELPNPHYRDGPVQVKRSGTQYFHGIDRMIPGNKASGQQP
Ga0187867_100242321	3300018033	Peatland	VPRHGLQGAGCLKQLPKPVFQQFDGLPQGAELPNPDNRDGPVQVKRWGTQYF
Ga0187871_100760621	3300018042	Peatland	VPRHGLRGVGGLKQLPKPVRQQFDGLPQGAELPNPDYRDGSVQVKRWGTQYFHGIDGMIP
Ga0187859_104265522	3300018047	Peatland	VPRHGLPGVGCLKQLPKPVCQLFDGLLQGAELPNPDYRDGSVQV
Ga0066667_109960982	3300018433	Grasslands Soil	VSRHGLLGIGSLKQLPKPVCQQFDGLPQGAEFPNPDHRDGSVQVKRWGTQ
Ga0193724_10285593	3300020062	Soil	VSRHGLLGVGSLKQLPKPVCQQFDGLPQGAELPNPDYRDRSVQVKRWGTQYFHGIDRMIP
Ga0210395_102459493	3300020582	Soil	VPRHGLRGVGGLKQLPKPVCQEFDGLPQGAELPNPDYRDGSVQVKRW
Ga0210395_102875713	3300020582	Soil	VPLHGLRGVGGLKQLSEPVCQQFDGLPQGAELRNPDDRDGSVQVKRWGTQYLHGIDG
Ga0179596_100102613	3300021086	Vadose Zone Soil	LVPRHGLRGVGRLKQLPKPVCQQFDGLPQGAELRNPDYRDGSVQFKRWGMQYF
Ga0210406_100201031	3300021168	Soil	VPLRGLRGVGGLKQLPKPVCQQFDGLPQGTELPNPDYRDGSVQVKRW
Ga0210408_106034753	3300021178	Soil	VSRHGLLGVGSLKQLPKPVCQQFDGLPQGAELPNPDYRDGSV
Ga0210388_101148551	3300021181	Soil	LRRPPIRGHTSAVPRHELRGVGSLEQLPKPVCQQFDGFLQGAELPNPDYRDGSVQVKRWGMQDFHGIERMIPDDKASG
Ga0210388_111530692	3300021181	Soil	MPRHGLRGVGGLKQLPKPVFQQFDGLPQGAELPNPDYRDGPVQVK
Ga0210386_105192962	3300021406	Soil	VPRHELRGVGSLKQLPKPVCQQVDGFRQRAELPNPDYRDRSVQLKRRGMQDFHGIE
Ga0210384_105363701	3300021432	Soil	VPRHGLSGVGCLEQFPKPAFQQFDGLLQGAEFSNPDYRDGSAQVERWGTQYLHAIDGTIPGNEASG
Ga0213878_100024481	3300021444	Bulk Soil	VPRHGLRGVSGLKQLPKPVFQLFDGLPQGAKLPSPDYRDGRVQVKRWGTQYFHGVDRMIPNNKASR
Ga0210398_109133001	3300021477	Soil	VPRHGLRGAGSLKQLPKPLCQQFDGFPQGAELTNPDYRDGSVQVKRWGAQ
Ga0207692_103230852	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	VPRHGIRGVGCLKQLPKPVCQQFDGLLQRAELSNPDYRDGSVQVKRWGTQYFHAID
Ga0207699_101927871	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	VSRHGLLGVGSLKQLPKPVCQQFDGLPQGAELPNPDYRDRSVQ
Ga0207693_111777911	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MRGHTSSLPRHGLLGVGSLKQLPKPVCQQVEGLPQGAELPNPDYRDGSVQVKRWGTQYFHGIDRMIPGNKAS
Ga0207694_103254972	3300025924	Corn Rhizosphere	MRGHTSAVPRHGLRVFGCLEQLPQPECQQFDRLLQSAELTNTDDSDGSVQVKRWGAQDFHGIEGMIPGNKARG
Ga0207690_100661524	3300025932	Corn Rhizosphere	VPRHGLRGVGCLKQLPKPVFQEFDGFLQGAELSNPDYRDGSVQLKRWGTQYFHAIDGTIPGDEASG
Ga0207686_102142813	3300025934	Miscanthus Rhizosphere	VSRHGLLGVGSLKQLPKPVCQQFDGLPQGAELPNSDYRDGSVQVKRRGMQY
Ga0207670_100882971	3300025936	Switchgrass Rhizosphere	VPRHGLRGVDCLKQLPKPVFQQFDGLPQGAELSNSDYRDGSVQVKRRGAQYFHAIDGTIPGNKASG
Ga0207661_100649594	3300025944	Corn Rhizosphere	VPRHGLRGVGCLKQLPKPVFQEFDSFLQGAELSNPDYRDGSVQLKRWGTQYFHAIDGTIPGNKASG
Ga0207702_103782201	3300026078	Corn Rhizosphere	VPRHGLRGVGCLKQLPKPVFQEFDGFLQGAELSDPDYRDGSVQL
Ga0207683_114099211	3300026121	Miscanthus Rhizosphere	VSRHGLLGVGSLKQLPKPVCQQFDGLPQGAELPNPNYRDGSVQLKRWET
Ga0209375_12524471	3300026329	Soil	VPRHGLLGVGSLKQLPKPVCQQFDGLPQGAELPNPDYRDGSVQAKRWG
Ga0209473_11196711	3300026330	Soil	LVPRHGLRGVGCLKQLPKPVCQQFDGLPQGAELRNPDYRDGSVQFKR
Ga0209056_106895922	3300026538	Soil	VSRHGLLGIGSLKQLPKPACQQFDGLPQGAEFPNPDHRDGSVQVKRWGTQYFHEIDRMIPGNKA
Ga0209655_101160241	3300027767	Bog Forest Soil	VPRHELRGVGSLKQLPKPVCQQFDGFPQGAELTNP
Ga0209167_101491022	3300027867	Surface Soil	MPRRGLRGVGRLKQLPKPVFQVFDSLPQGAELPNPDYRDGSV
Ga0209579_101127481	3300027869	Surface Soil	VPRHGLCGVGSLKQLPKPVCQQFDGLPQGAELRNPDYRDGSVQVKRWGMQYFH
Ga0209068_101568461	3300027894	Watersheds	VPRHWLRGVGGLKQLPKPVRQQFDGLPQGAELRNPDNRDGS
Ga0247663_10390891	3300028145	Soil	MRGHTCSVPRHGLHGIGSLKQLPKPVCQQFDGLPQGAELLNPDYRDGSVQVKRWGTQHLH
Ga0311371_119560172	3300029951	Palsa	VPRHGLRGVGCLKQLPKPVFQQFDGLPQGAEWLNPDYRDGSVQVKRWGTQYFHG
Ga0311356_106830651	3300030617	Palsa	MPRHGLRGVGCLKQLPKPVFQQFDGPLQGAELSNPDYRDGPVHVKRWGTQYFQRIDGTIPGDKASRQQPDTITG
Ga0302325_107097281	3300031234	Palsa	VPRHGLRGVGCLKQLPKPVCQQFDGLPQGAELPDPDYRDGSVQVKRWG
Ga0302324_1000761799	3300031236	Palsa	VLRHGPFGVGSLKQLPKPVCQQFDGLPQGAELPNPDYRDGSVQVKRWGTQYFHGIDRMIP
Ga0302140_104963253	3300031261	Bog	MTNECRSPNPVGCLKQLPKPVFQLFDGLPQGTELPNPNYRDGRVQVKRWGTQYFHGVDRM
Ga0302326_114476783	3300031525	Palsa	VLRHGPFGVGSLKQLPKPVCQQFDGLPQGAELPNPDYRDGSVQVKRWGTQ
Ga0307476_103021771	3300031715	Hardwood Forest Soil	VPRHGLLGVGSLKQLPKPVCQQFDGLAQGAELRNPDYRDGSVQVK
Ga0307474_102436884	3300031718	Hardwood Forest Soil	VPRHGLLGVGIIKQLPKPVCQQFEGLPQSAKLPNPDYRDGSVQVKRWGTQYFHGIDRTISGNKASR
Ga0307468_1006265753	3300031740	Hardwood Forest Soil	VSRHGLLGVGSLKQLPKPVCQQFDGLPQGAELPNPDYRDRSVQVKRWGT
Ga0307477_101792721	3300031753	Hardwood Forest Soil	LVLRHRLRGVGSLKQLPKPVCQQFDGLPQGAELRNPDYRDGSVQFKRWGMQYL
Ga0307477_105167901	3300031753	Hardwood Forest Soil	VPRHGLRGVGCLKQLPKPVCQQFDGLPQGAELPNPDYRDGSVQVKRWGTQDFHGIDRMIPGNK
Ga0302315_102142303	3300031837	Palsa	VPRHGLLGAGSLEQLPQPVCQQFDGLPQGAELRNPDYRDGSVQVKRRGTQYFHG
Ga0307470_114826961	3300032174	Hardwood Forest Soil	VSRHGLLGVGSLKQLPKPVCQQFDGLPQGAELPNPDYRD
Ga0335079_107479721	3300032783	Soil	VPRHGLRGVGVLKQLPKPVFQQFDGFPQGAQLPSPDYRDGRV
Ga0334854_152769_1_183	3300033829	Soil	MPRQGLRGVGGLKQLPKPVCQQFDGLAQGAELPNPDYRDGSVQVKRWRTQYFHGINRMIP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F070511

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences