Metagenome Family F070322

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F070322
Family Type	Metagenome
Number of Sequences	123
Average Sequence Length	65 residues
Representative Sequence	MLLRSIRSRMLGLVVATVVPFTALIGAGLWNQWRSDQAAAIDRALDEARLLAAQVDDHIGNVEN
Number of Associated Samples	104
Number of Associated Scaffolds	123

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	92.04 %
% of genes near scaffold ends (potentially truncated)	91.06 %
% of genes from short scaffolds (< 2000 bps)	86.18 %
Associated GOLD sequencing projects	100
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.58

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (68.293 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (16.260 % of family members)
Environment Ontology (ENVO)	Unclassified (18.699 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (46.341 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 67.39% β-sheet: 0.00% Coil/Unstructured: 32.61%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.58
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.58
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 123 Family Scaffolds
PF01494	FAD_binding_3	15.45
PF09084	NMT1	3.25
PF00005	ABC_tran	2.44
PF00196	GerE	1.63
PF00890	FAD_binding_2	1.63
PF00939	Na_sulph_symp	1.63
PF13450	NAD_binding_8	1.63
PF02515	CoA_transf_3	0.81
PF00126	HTH_1	0.81
PF01266	DAO	0.81
PF12697	Abhydrolase_6	0.81
PF00202	Aminotran_3	0.81
PF06532	NrsF	0.81
PF13531	SBP_bac_11	0.81
PF03901	Glyco_transf_22	0.81
PF00480	ROK	0.81
PF00990	GGDEF	0.81
PF07478	Dala_Dala_lig_C	0.81
PF00872	Transposase_mut	0.81
PF03746	LamB_YcsF	0.81
PF02775	TPP_enzyme_C	0.81
PF00275	EPSP_synthase	0.81
PF00501	AMP-binding	0.81
PF03401	TctC	0.81

COG ID	Name	Functional Category	% Frequency in 123 Family Scaffolds
COG0654	2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases	Energy production and conversion [C]	30.89
COG0578	Glycerol-3-phosphate dehydrogenase	Energy production and conversion [C]	15.45
COG0644	Dehydrogenase (flavoprotein)	Energy production and conversion [C]	15.45
COG0665	Glycine/D-amino acid oxidase (deaminating)	Amino acid transport and metabolism [E]	15.45
COG0715	ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component	Inorganic ion transport and metabolism [P]	3.25
COG4521	ABC-type taurine transport system, periplasmic component	Inorganic ion transport and metabolism [P]	3.25
COG0471	Di- and tricarboxylate antiporter	Carbohydrate transport and metabolism [G]	1.63
COG1055	Na+/H+ antiporter NhaD or related arsenite permease	Inorganic ion transport and metabolism [P]	1.63
COG1940	Sugar kinase of the NBD/HSP70 family, may contain an N-terminal HTH domain	Transcription [K]	1.63
COG1540	5-oxoprolinase subunit A	Amino acid transport and metabolism [E]	0.81
COG1804	Crotonobetainyl-CoA:carnitine CoA-transferase CaiB and related acyl-CoA transferases	Lipid transport and metabolism [I]	0.81
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	0.81
COG3328	Transposase (or an inactivated derivative)	Mobilome: prophages, transposons [X]	0.81
COG4944	Uncharacterized conserved protein	Function unknown [S]	0.81

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	69.11 %
Unclassified	root	N/A	30.89 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	69.11 %
Unclassified	root	N/A	30.89 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	68.29 %
Unclassified	root	N/A	30.89 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.81 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	58.54 %
Unclassified	root	N/A	30.89 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	2.44 %
TACK group	clade	All Organisms → cellular organisms → Archaea → TACK group	0.81 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.81 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	41.46 %
Unclassified	root	N/A	30.89 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.63 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	1.63 %
Thaumarchaeota	phylum	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	0.81 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.81 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	34.15 %
Unclassified	root	N/A	30.89 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.63 %
Rhodobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	0.81 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.81 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	0.81 %
Nitrosopumilales	order	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales	0.81 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.89 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	24.39 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2.44 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.63 %
Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_66_14	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_66_14	0.81 %
Amorphaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Amorphaceae	0.81 %
Nitrosopumilaceae	family	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae	0.81 %
Burkholderiales genera incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis	0.81 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.81 %
Rhodobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae	0.81 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.89 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	23.58 %
Variibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Variibacter	1.63 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.63 %
Acuticoccus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Amorphaceae → Acuticoccus	0.81 %
Rhizobiales bacterium GAS191	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium GAS191	0.81 %
Nitrosopumilus	genus	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus	0.81 %
Rhodovulum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Rhodovulum	0.81 %
Rubrivivax	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Rubrivivax	0.81 %
Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_66_14	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_66_14	0.81 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.81 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.89 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	23.58 %
Variibacter gotjawalensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Variibacter → Variibacter gotjawalensis	1.63 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.63 %
unclassified Rhodovulum	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Rhodovulum → unclassified Rhodovulum	0.81 %
Acuticoccus mangrovi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Amorphaceae → Acuticoccus → Acuticoccus mangrovi	0.81 %
unclassified Nitrosopumilus	no rank	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → unclassified Nitrosopumilus	0.81 %
Rubrivivax gelatinosus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Rubrivivax → Rubrivivax gelatinosus	0.81 %
Rhizobiales bacterium GAS191	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium GAS191	0.81 %
Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_66_14	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_66_14	0.81 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.81 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.89 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	23.58 %
Variibacter gotjawalensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Variibacter → Variibacter gotjawalensis	1.63 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.63 %
Nitrosopumilus sp.	species	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → unclassified Nitrosopumilus → Nitrosopumilus sp.	0.81 %
Rhodovulum sp. PH10	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Rhodovulum → unclassified Rhodovulum → Rhodovulum sp. PH10	0.81 %
Acuticoccus mangrovi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Amorphaceae → Acuticoccus → Acuticoccus mangrovi	0.81 %
Rubrivivax gelatinosus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Rubrivivax → Rubrivivax gelatinosus	0.81 %
Rhizobiales bacterium GAS191	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium GAS191	0.81 %
Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_66_14	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_66_14	0.81 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.81 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.81 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000550\|F24TB_12099047	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	649	Open in IMG/M
3300001661\|JGI12053J15887_10223168	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	947	Open in IMG/M
3300004157\|Ga0062590_100050360	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2306	Open in IMG/M
3300005177\|Ga0066690_11059055	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Rubrivivax → Rubrivivax gelatinosus	506	Open in IMG/M
3300005332\|Ga0066388_105102265	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	667	Open in IMG/M
3300005332\|Ga0066388_107061210	Not Available	565	Open in IMG/M
3300005435\|Ga0070714_100650077	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1015	Open in IMG/M
3300005436\|Ga0070713_101540160	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	645	Open in IMG/M
3300005438\|Ga0070701_10306591	All Organisms → cellular organisms → Bacteria → Proteobacteria	978	Open in IMG/M
3300005529\|Ga0070741_10688289	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_66_14	903	Open in IMG/M
3300005529\|Ga0070741_11378316	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	587	Open in IMG/M
3300005538\|Ga0070731_10723692	All Organisms → cellular organisms → Bacteria → Proteobacteria	661	Open in IMG/M
3300005610\|Ga0070763_10705531	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Rhodovulum → unclassified Rhodovulum → Rhodovulum sp. PH10	591	Open in IMG/M
3300005764\|Ga0066903_102361446	All Organisms → cellular organisms → Bacteria → Proteobacteria	1028	Open in IMG/M
3300005764\|Ga0066903_102731321	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	958	Open in IMG/M
3300005764\|Ga0066903_107679139	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	555	Open in IMG/M
3300006050\|Ga0075028_100034255	All Organisms → cellular organisms → Bacteria → Proteobacteria	2350	Open in IMG/M
3300006059\|Ga0075017_100693309	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	783	Open in IMG/M
3300006102\|Ga0075015_100739236	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	586	Open in IMG/M
3300006177\|Ga0075362_10646484	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	549	Open in IMG/M
3300006354\|Ga0075021_10767789	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	621	Open in IMG/M
3300006797\|Ga0066659_10995633	All Organisms → cellular organisms → Bacteria → Proteobacteria	701	Open in IMG/M
3300006800\|Ga0066660_11074299	All Organisms → cellular organisms → Bacteria → Proteobacteria	640	Open in IMG/M
3300006800\|Ga0066660_11309577	All Organisms → cellular organisms → Bacteria	567	Open in IMG/M
3300006800\|Ga0066660_11446840	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	539	Open in IMG/M
3300006845\|Ga0075421_100874586	Not Available	1028	Open in IMG/M
3300006847\|Ga0075431_101463530	All Organisms → cellular organisms → Bacteria → Proteobacteria	642	Open in IMG/M
3300006852\|Ga0075433_11877316	All Organisms → cellular organisms → Bacteria → Proteobacteria	514	Open in IMG/M
3300006893\|Ga0073928_10159794	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1808	Open in IMG/M
3300007265\|Ga0099794_10492513	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	645	Open in IMG/M
3300009012\|Ga0066710_100804931	Not Available	1441	Open in IMG/M
3300009088\|Ga0099830_10952570	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	710	Open in IMG/M
3300009094\|Ga0111539_10900570	Not Available	1029	Open in IMG/M
3300009100\|Ga0075418_11164506	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	835	Open in IMG/M
3300009147\|Ga0114129_12368033	Not Available	636	Open in IMG/M
3300010043\|Ga0126380_10434776	All Organisms → cellular organisms → Bacteria	986	Open in IMG/M
3300010043\|Ga0126380_11130401	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	670	Open in IMG/M
3300010043\|Ga0126380_12174205	Not Available	512	Open in IMG/M
3300010358\|Ga0126370_10710415	All Organisms → cellular organisms → Bacteria → Proteobacteria	884	Open in IMG/M
3300010359\|Ga0126376_11370388	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	731	Open in IMG/M
3300010376\|Ga0126381_103151079	Not Available	653	Open in IMG/M
3300011271\|Ga0137393_10111112	Not Available	2249	Open in IMG/M
3300011271\|Ga0137393_10736720	All Organisms → cellular organisms → Bacteria	844	Open in IMG/M
3300011271\|Ga0137393_11350252	All Organisms → cellular organisms → Bacteria → Proteobacteria	602	Open in IMG/M
3300012199\|Ga0137383_10658019	Not Available	766	Open in IMG/M
3300012200\|Ga0137382_10749856	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	701	Open in IMG/M
3300012203\|Ga0137399_10444284	All Organisms → cellular organisms → Bacteria → Proteobacteria	1084	Open in IMG/M
3300012209\|Ga0137379_11257325	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	647	Open in IMG/M
3300012924\|Ga0137413_10345697	All Organisms → cellular organisms → Bacteria → Proteobacteria	1054	Open in IMG/M
3300012925\|Ga0137419_11769811	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	528	Open in IMG/M
3300012930\|Ga0137407_11741927	All Organisms → cellular organisms → Bacteria	594	Open in IMG/M
3300012930\|Ga0137407_11826362	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	579	Open in IMG/M
3300012930\|Ga0137407_12341468	Not Available	510	Open in IMG/M
3300012948\|Ga0126375_10630163	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → unclassified Nitrosopumilus → Nitrosopumilus sp.	824	Open in IMG/M
3300014501\|Ga0182024_10277106	All Organisms → cellular organisms → Bacteria → Proteobacteria	2231	Open in IMG/M
3300014657\|Ga0181522_10320062	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Variibacter → Variibacter gotjawalensis	922	Open in IMG/M
3300015053\|Ga0137405_1431498	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5958	Open in IMG/M
3300015242\|Ga0137412_10687404	Not Available	763	Open in IMG/M
3300016319\|Ga0182033_10469496	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1076	Open in IMG/M
3300016371\|Ga0182034_11047833	Not Available	706	Open in IMG/M
3300016387\|Ga0182040_10556302	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	924	Open in IMG/M
3300016387\|Ga0182040_11910678	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	509	Open in IMG/M
3300017970\|Ga0187783_10041451	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3411	Open in IMG/M
3300017975\|Ga0187782_10845132	Not Available	709	Open in IMG/M
3300018076\|Ga0184609_10390148	Not Available	649	Open in IMG/M
3300018088\|Ga0187771_10746996	Not Available	830	Open in IMG/M
3300018422\|Ga0190265_11761052	Not Available	728	Open in IMG/M
3300018422\|Ga0190265_12976070	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	566	Open in IMG/M
3300018429\|Ga0190272_12624011	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	552	Open in IMG/M
3300018466\|Ga0190268_10153634	Not Available	1180	Open in IMG/M
3300018468\|Ga0066662_11416402	Not Available	720	Open in IMG/M
3300018469\|Ga0190270_12307356	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	599	Open in IMG/M
3300018476\|Ga0190274_11464790	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	773	Open in IMG/M
3300018476\|Ga0190274_11711468	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	723	Open in IMG/M
3300018482\|Ga0066669_10980212	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	762	Open in IMG/M
3300019377\|Ga0190264_11326273	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	610	Open in IMG/M
3300020170\|Ga0179594_10368824	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	545	Open in IMG/M
3300021081\|Ga0210379_10098115	Not Available	1217	Open in IMG/M
3300021086\|Ga0179596_10024022	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Amorphaceae → Acuticoccus → Acuticoccus mangrovi	2259	Open in IMG/M
3300021178\|Ga0210408_11478176	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	509	Open in IMG/M
3300021407\|Ga0210383_10489648	All Organisms → cellular organisms → Bacteria → Proteobacteria	1062	Open in IMG/M
3300021475\|Ga0210392_10770653	All Organisms → cellular organisms → Bacteria	718	Open in IMG/M
(restricted) 3300021518\|Ga0224722_1245285	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	574	Open in IMG/M
3300021560\|Ga0126371_11204102	All Organisms → cellular organisms → Bacteria → Proteobacteria	894	Open in IMG/M
3300025928\|Ga0207700_10537941	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1036	Open in IMG/M
3300025942\|Ga0207689_10600346	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium GAS191	926	Open in IMG/M
3300026497\|Ga0257164_1031902	All Organisms → cellular organisms → Bacteria → Proteobacteria	795	Open in IMG/M
3300027629\|Ga0209422_1130217	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	572	Open in IMG/M
3300027894\|Ga0209068_10562481	Not Available	662	Open in IMG/M
3300028536\|Ga0137415_10432816	All Organisms → cellular organisms → Bacteria → Acidobacteria	1121	Open in IMG/M
3300028809\|Ga0247824_10238868	Not Available	1005	Open in IMG/M
3300028814\|Ga0307302_10451365	Not Available	637	Open in IMG/M
3300031231\|Ga0170824_111692685	All Organisms → cellular organisms → Bacteria	580	Open in IMG/M
3300031455\|Ga0307505_10143327	Not Available	1088	Open in IMG/M
3300031545\|Ga0318541_10073423	All Organisms → cellular organisms → Bacteria	1799	Open in IMG/M
3300031546\|Ga0318538_10443571	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	703	Open in IMG/M
3300031764\|Ga0318535_10181656	All Organisms → cellular organisms → Bacteria → Proteobacteria	940	Open in IMG/M
3300031771\|Ga0318546_10487790	Not Available	864	Open in IMG/M
3300031821\|Ga0318567_10754655	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	552	Open in IMG/M
3300031858\|Ga0310892_11214907	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	537	Open in IMG/M
3300031890\|Ga0306925_10773116	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Variibacter → Variibacter gotjawalensis	999	Open in IMG/M
3300031896\|Ga0318551_10229558	All Organisms → cellular organisms → Bacteria → Proteobacteria	1033	Open in IMG/M
3300031908\|Ga0310900_10716768	Not Available	802	Open in IMG/M
3300031910\|Ga0306923_10349583	All Organisms → cellular organisms → Bacteria	1686	Open in IMG/M
3300031910\|Ga0306923_12306075	Not Available	536	Open in IMG/M
3300031954\|Ga0306926_11924081	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	667	Open in IMG/M
3300031954\|Ga0306926_12906021	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	514	Open in IMG/M
3300032043\|Ga0318556_10409970	Not Available	709	Open in IMG/M
3300032076\|Ga0306924_10772034	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1074	Open in IMG/M
3300032160\|Ga0311301_11256516	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	942	Open in IMG/M
3300032205\|Ga0307472_101282432	Not Available	704	Open in IMG/M
3300032261\|Ga0306920_103126468	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	621	Open in IMG/M
3300032955\|Ga0335076_11205585	All Organisms → cellular organisms → Bacteria → Proteobacteria	641	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	93.50%
Host-Associated	Host-Associated	6.50%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	85.37%
Aquatic	Environmental → Aquatic	8.13%
Plants	Host-Associated → Plants	6.50%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	85.37%
Sediment	Environmental → Aquatic → Sediment	4.88%
Rhizosphere	Host-Associated → Plants → Rhizosphere	4.88%
Freshwater	Environmental → Aquatic → Freshwater	2.44%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.81%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.81%
Roots	Host-Associated → Plants → Roots	0.81%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	66.67%
Loam	Environmental → Terrestrial → Soil → Loam	12.20%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	6.50%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.88%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	4.88%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.81%
Lake	Environmental → Aquatic → Freshwater → Lake	0.81%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.81%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.81%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.81%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	0.81%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	34.96%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	21.95%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	7.32%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	6.50%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.88%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	4.88%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.06%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.25%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	3.25%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.44%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.81%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	0.81%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.81%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.81%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.81%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.81%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.81%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	0.81%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	16.26%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	11.38%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	8.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	8.13%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	7.32%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	4.88%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	4.06%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.06%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	4.06%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	2.44%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.44%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.44%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	2.44%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.44%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.44%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	1.63%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.81%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Sediment	0.81%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.81%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.81%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.81%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.81%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.81%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.81%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.81%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	0.81%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	0.81%
Prmafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil	0.81%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.81%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.81%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.81%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.81%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	0.81%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental	Open in IMG/M
3300005529	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005993	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-046	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006102	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013	Environmental	Open in IMG/M
3300006177	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2	Host-Associated	Open in IMG/M
3300006354	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014657	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_10_metaG	Environmental	Open in IMG/M
3300014838	Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300015053	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017975	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018076	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex	Environmental	Open in IMG/M
3300018088	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_10_MG	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300019377	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T	Environmental	Open in IMG/M
3300020170	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_coex redo	Environmental	Open in IMG/M
3300021086	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021518 (restricted)	Freshwater sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia - Balambano_FR1_MetaG	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026291	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-049 (SPAdes)	Environmental	Open in IMG/M
3300026497	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-08-B	Environmental	Open in IMG/M
3300027629	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M3 (SPAdes)	Environmental	Open in IMG/M
3300027894	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028809	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_PalmiticAcid_Day48	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031455	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 23_S	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031764	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental	Open in IMG/M
3300031858	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032955	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5	Environmental	Open in IMG/M
3300034268	Forest soil microbial communities from Eldorado National Forest, California, USA - SNFC_MG_FRD_1.2	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
F24TB_120990472	3300000550	Soil	MLLRSIRSQLLGLVLATVVPFTALIGFGVWKEWQSDQAAAMALAVNEARLLAAQVDDHLGNLENLLIGLSR
JGI12053J15887_102231683	3300001661	Forest Soil	MLLRSIRSRLLALVIATVSPFIALVGVGLWSQWRDDQSAAIQRAYSEAQLLAAQVDDHISNIENLLAGLSRA
Ga0062590_1000503601	3300004157	Soil	MMLLRSIRSRLIGLVIATVVPFTGLIAVGLWNQWHTDHRAALQRALNEARLIAAQVDDHIGNLKNLLSGVS
Ga0066690_110590551	3300005177	Soil	MLLRSIRSSLLVLVLATVVPFVALVGTGLWSQWRADQAAAIERALNEARLLAAQLDDHISNL
Ga0066388_1051022651	3300005332	Tropical Forest Soil	MLLRSIRSQLLGLVLATVVPFTALIGIGLWSQWQSDQAAAIQRATNEARLVAAQVDDYIGNLDNLLTGLSRAV
Ga0066388_1070612101	3300005332	Tropical Forest Soil	MFLSIRSRLLGLVLATVVPFTALIAFGLWSQWRTDESLVNERAIGEARQLAEQV
Ga0070714_1006500772	3300005435	Agricultural Soil	VLRSIRSRLLGLVVATVIPFTVLMGVGLWGRWHSDQAVAVQQAVNEARVLAAQVDDHLGKLESLL
Ga0070714_1024986581	3300005435	Agricultural Soil	MLRGIRTRLLGLVIATVVPFTALVGGGLWNQWRADQTQAVTSALIDARLLAARVDDQISELDNLLVGLSQAVSTSPDAVAANDTAFRHAKNE
Ga0070713_1015401602	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MMLRGIRSRLLGLVLATVIPFTALIGLGLWSHWRNERANASERAIAEARLLAAQVDDHLSNLDALLAG
Ga0070701_103065911	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	MLLRSIRSRLIALVVASAVPFTALIGVGLWNQWRADHKAAIQRATDESLVIADDVDDHIGNLKNLLSGL
Ga0070741_106882892	3300005529	Surface Soil	MLFRGIRIRLLGLVLATVVPFTALIGVGLWSQWRSDEAAATQRSLNEARLLASQVD
Ga0070741_113783161	3300005529	Surface Soil	MLLRSIRSRLLGLVVAAVAPFTALIGAGLWNQWRSDQATAITRASDEARLLVAQVD
Ga0070731_107236922	3300005538	Surface Soil	MLLGSIRSRLLVLVLATVVPFMALVGAGLWSQWREDRAAAVERALNEARLLAAQLDDHISNLENLMAGLSHAVSMD
Ga0070763_107055311	3300005610	Soil	MLLRSIRSRLLVLVLATVVPFVALVGAGLWSQWQEDRAAAVERALNEARLLGAQLDDHISNLENLLAGL
Ga0066903_1023614462	3300005764	Tropical Forest Soil	MLLRSIRSRLLGLVLATVVPFTALIGAGIWNLWRSDRMAAVERAIDEARLLASEV
Ga0066903_1027313213	3300005764	Tropical Forest Soil	MLLGSIRSQLLGLVLATVIPFTALIGVGLWRQWQSDQTTATRRALSDAQLLA
Ga0066903_1076791392	3300005764	Tropical Forest Soil	VLRSIRSRLLALVVATVIPLSVLIGGGLWSQWRSDQAAAVQLTIDQARLLATQVDDHIGNVENLL
Ga0080027_102506551	3300005993	Prmafrost Soil	MLRGIRTRLLGLVIATVVPFTALIGGGLWNQWRGDQAQAFRSALIEARLLAARVDDQITELNDLLVGLSQAVSTNPDDIQANDAMFRHA
Ga0075028_1000342551	3300006050	Watersheds	MLLRSIRSRLLVLVLATVVPFVALVGIGLWSQWREDQATAIDRALNEARLLAA
Ga0075017_1006933092	3300006059	Watersheds	MLRGIRTRLLGLVVATVVPFTALIGGGLWNQWRGDQTQAIRSALIEARLLAARVDDQISE
Ga0075015_1007392361	3300006102	Watersheds	MLRGIRTRLLGLVIATVVPFMALIGCGLWVQWRSDQVQAFRSALIEARLVAARVDDQIGDLDNLLVGLSQ
Ga0075362_106464841	3300006177	Populus Endosphere	MLLRSIRSRLIGLVLASVVPFIALISVGLWNLWRTDQKAAFERSITEARVIAGQVDDHIGNVRN
Ga0075021_107677892	3300006354	Watersheds	MLRGIRTRLLGLVIATVVPFTALIGGGLWNQWRGDQAQAIRSALIEARLL
Ga0066659_109956332	3300006797	Soil	MLGGIRTRLLGLVVATVVPFTALVGGGLFSQWKGDQAQAFKSALDEARLLAVQVDDEVGNLELLLAGLS
Ga0066660_110742993	3300006800	Soil	MLGGIRTRLLGLVVATVVPFMAVIGVGLVSQWRDDQAQALKNALDEARLLAAQVDDEIG
Ga0066660_113095771	3300006800	Soil	MLLRSIRSQLLGLVLATVIPFTALIGVGLWNQWKRDQTAAIERAINEARLLAAQVDDYLGNLDNLLIG
Ga0066660_114468402	3300006800	Soil	MLLSSIRTRLLGLVLATILPFAALIGISLWTQWRDDQAAAIQRAIIEARLLAAQVDDHI
Ga0075421_1008745862	3300006845	Populus Rhizosphere	MLLRSIRSRLIGLVLASVTPFIALISVGLWNLWRTDQKAAFERSITEARLVAGQVDDHI
Ga0075431_1014635301	3300006847	Populus Rhizosphere	MLLRSIRSRLIGLVVASVVPFAALIGAGLWNQWRTGERAALQRAINEARLIASQVDDHIGNVKNLLSGLSVAVSWD
Ga0075433_118773162	3300006852	Populus Rhizosphere	MMLLRSIRSRLIALVVASAVPFTALIGVGLWNQWRADHKAAIQRAVDESRVIADDVDDHIGNLRNLLSGLS
Ga0073928_101597943	3300006893	Iron-Sulfur Acid Spring	MLLHGIRSRLLGLVLATVAPFIALIGVGLWSQWKEQRAAAMERAIGEARVLAAQ
Ga0099794_104925132	3300007265	Vadose Zone Soil	MLLRSIRSRLLGLVLATVIPFTALVGFGLWSQWRNDQAAAVERASHEARLVAAQVDDHIGNLANL
Ga0066710_1008049312	3300009012	Grasslands Soil	MLLRSIRTRMLGLVVATAVPFVALVGVGLWNQWRNDQATAVGLARDEARLLAA
Ga0099830_109525701	3300009088	Vadose Zone Soil	MLLGSIRSRLLGLVLATVIPFTALVGFGLWSQWRNDQAAAIEHASHEARLVAAQVDDHIGNLANLLGGLSWA
Ga0111539_109005701	3300009094	Populus Rhizosphere	MMLLRSIRSRLIALVVASAVPFTALIGVGLWNQWRADHKAAIQRATDESLVIADDVD
Ga0075418_111645062	3300009100	Populus Rhizosphere	MLGLVVATVIPFTALIGVGLWNQWRHDQAASVERAFDEARLIAVRI
Ga0114129_123680332	3300009147	Populus Rhizosphere	MLSGIRTRLLGLVIATVVPFAALIGAGLGSQWRSDHAHALKSALNEARRVAAQVDD
Ga0126380_104347762	3300010043	Tropical Forest Soil	MDGNAMLRGIRSRLLGLVVGTVIPFVALIGVGLWSQWRSDEAAAIQRALDEARL
Ga0126380_111304012	3300010043	Tropical Forest Soil	MLLRSIRSQLLGLVVATVVPFTALIGTGLWSQWRTDQAAAIQRASDEARLIAAQVDDHIGNLANL
Ga0126380_121742051	3300010043	Tropical Forest Soil	MLWGIRTRLLGLVVATVVPFSALAGAGLWTQWQLDRARAFASALNEARRVADRIDDEISNLENLLAGLSRAV
Ga0126373_109493011	3300010048	Tropical Forest Soil	MLRGIRTRLLGLVIATVVPFTALVGGGLWNQWRSDEAQAIKSALVEARLLAAQIDDQINQFENLLVGLSAGLSPNPNDIAKNDAM
Ga0126370_107104152	3300010358	Tropical Forest Soil	MLLRSIRSRMLGLVVATAVPFVALVGVGLWNQWRYDHAAAVGLALDEARLLAAQVDEHIGNLDNLMAGLSR
Ga0126376_113703881	3300010359	Tropical Forest Soil	MDGNAMLRGIRSRLLGLVVGTVIPFVALIGVGLWSQWRRDEAAAIQRALDEARLLAAQVDDLIGNLDNLLI
Ga0126381_1031510792	3300010376	Tropical Forest Soil	MLLRSIRSRLLALVLATVLPITLLIGAGLWRQWQSDQAAAIRQSIGEARLLAA
Ga0137393_101111121	3300011271	Vadose Zone Soil	MLLRSIRSRLLVLVLATVIPFMALMGAGLWSQWRSDHAAALQRALNEARLLAAQVDDHIG
Ga0137393_107367201	3300011271	Vadose Zone Soil	LDEDWAMLLRSIRSSLLVLVLATVVPFVALVGAGLWSQWRADQAAAIERALNEARLLAAQLDDHISNL
Ga0137393_113502522	3300011271	Vadose Zone Soil	MLLRSIRSRLLGLVLATVVPFTALIGFGVWQRWQDDQSDAIQRAINEARLLAAQVDDHIGNL
Ga0137388_112694642	3300012189	Vadose Zone Soil	MKVVSTMLRGIRTRLLGLVIATVVPFTALIGGGLWVQWRGDQTQAFRSALIEARLLAARVDDQIGDLDSLLLGLSQAVSTKPDDIQANDGVLRRTKAES
Ga0137383_106580193	3300012199	Vadose Zone Soil	MLRGIRTRLLCLVVATVVPFAALVGAGLWTQWESDQARAIKSALIEARLLACQVDDEIGDLE
Ga0137382_107498561	3300012200	Vadose Zone Soil	MLLGSIRTRLLGLVFATVVPFTALIAAGLWNQWRSDQAAAIERASNEARLLAAQVDDHIGNLESLLV
Ga0137399_104442841	3300012203	Vadose Zone Soil	MLRGIRTRLLGLVVATVVPFTALVGGGLYSQWKGDQAQAFKSALDEARLLA
Ga0137379_112573251	3300012209	Vadose Zone Soil	MLLRGIRSRLLGLVLATVVPFTALIGFGVSQRWHDDQSAAIQRAVNEARLLAA*
Ga0137413_103456971	3300012924	Vadose Zone Soil	MLRGIRTRLLGLVIATVVPFTALIGGGLWNQWRGDQALAIRSALIEARLLAAQVDDQISELDSLLVGL
Ga0137419_117698111	3300012925	Vadose Zone Soil	MLLGSIRSRLLGLVLATVVPFTALIGLGLWDQWRSDRAAAIQRAISEARLLAAQVDDHLANL
Ga0137407_117419271	3300012930	Vadose Zone Soil	MLLCSIRSRLLGLVVATVVPFAGLIGFGLWNQWHNDQAEAIRRASDEARLLAAQVDDHHPPGELARDQRAPA
Ga0137407_118263621	3300012930	Vadose Zone Soil	MLLRSIRSQLLGLVVATVVPFTALIGIGLSSQWRSDRAEAIERARNEARLLAAEVDDYIGNLEN
Ga0137407_123414682	3300012930	Vadose Zone Soil	MLLRSIRTRMLGLVVATAVPFIALIGIGLWNQWRSDYAAAIWLARDEARLL
Ga0126375_106301631	3300012948	Tropical Forest Soil	MMLLRSIRSRLIGLVLASVVPFIALISVGLWNLWRTDQKAALERASIEARLIAGQVDDHIGNLTNLLAGLSV
Ga0182024_102771063	3300014501	Permafrost	MLRGIRTRLLGLVIATVVPFTALIGGGLWNQWRGDQSQAFRSALIEARLLAA
Ga0181522_103200622	3300014657	Bog	VLRSIRSRLLALVVATMLPLAILITAGVLIRWNLDQSTAIAQAISEARLLAAQIDDHVGNLENLLTGLT
Ga0182030_112095431	3300014838	Bog	MLRGIRTRLLGLVIATVVPFATLIGGGLWTQWQSDQAQAVQSALVDARLLAAQVDDEIGDLENFLVGLSAAMSTDPEH
Ga0137405_14314983	3300015053	Vadose Zone Soil	MLGLVVATVIPFTALIGVGLWNQWRHDQAAAVQRAIDEARLTAAEVDDHIGTWRAC*
Ga0137412_106874042	3300015242	Vadose Zone Soil	MLGGIRTRLLGLVIATVLPFAALIGAGLFTQWQLDTGRALRSALDEAHRVADRVDDQIGNFENMLVGA
Ga0182033_104694962	3300016319	Soil	MLLRSIRSRLLALVVATVIPFTVLIGAGLWSQWQSDQAAAIRQAISEARVLAAQIDDHIGDLENLLIGLG
Ga0182034_110478331	3300016371	Soil	MLRGIRTRLLGLVIATVVPFTALVGGGLWNQWRSDEAQAIKSALVEARLLAAQVDDQINQFENLLVGLSAG
Ga0182040_105563022	3300016387	Soil	MLLRSIRSRLLALVVATVIPFTVLIGAGLWSQWQSDQAAAIRQAIGEARVLAAQIDDHIGDLE
Ga0182040_119106781	3300016387	Soil	MLLRSIRSQLLGLVVATVVPFTALIGAGLWSQWRTDQAAAIQRASDEARLLAAQVDDHI
Ga0187783_100414514	3300017970	Tropical Peatland	MLESIRSRLLGLVLATVIPFTALIAYGVWSQWRTDQAAAIERANSEARELAELLDVYLANIESFL
Ga0187782_108451321	3300017975	Tropical Peatland	MFSSIRSRLLGLVLATVVAFTAVIIFGLGSQWLTDESAAHERAIREARLLAAEVDDQIGNIQGLL
Ga0184609_103901481	3300018076	Groundwater Sediment	MLLRSIRSQLLGLVLATVVPFTALIGFGVWKKWQSDQAAAMALAVNEARLLAAQVDDH
Ga0187771_107469962	3300018088	Tropical Peatland	MLLRSIRSRLLVLVLATVVPFLALMGGWLWSQWRDDRDAAVQRTLNEARLIAAQVDDHVGNLENLMVGL
Ga0190265_117610522	3300018422	Soil	MMLRGIRSRLLGLVLATVIPFTAVIAFGLIMQWRTDRAAAVERAVGEARLLAAQVDDHLG
Ga0190265_129760701	3300018422	Soil	MLLRSIRSRLIGLVVATVVPFAALIGVGLWNQWSTDHASAIRRSIVEARIVATQVDDHINNLDNLLIGISHSLSS
Ga0190272_126240111	3300018429	Soil	MLLRSIRSRLIGLVVASVVPFTALIGVGLWNQWRTDQKAAVERSVAEARLIAGQVDEHLGNLRNLLS
Ga0190268_101536341	3300018466	Soil	MLLRSIRSRLIGLVVASVVPFTALIGVGLWNQWRTDQRNAVERSVSDARLIAGQVDDHLNNLKNLLSGLSVA
Ga0066662_114164022	3300018468	Grasslands Soil	MRLHSIRLRLLGLVLATVVPFTALVGFGLWAQWQNDREVAIRRALIEARLLAAQVD
Ga0190270_123073561	3300018469	Soil	MMLLRSIRSRLIGLVVASVVPFTALIGVGLWNQWRTDQRTAVEVAVAEARLIASQVDDHVGNLKNL
Ga0190274_114647901	3300018476	Soil	MLLRSIRSRVIGLVIATVVPFTALIGAGLWDQWSVDHAAAIRRSNVEARVVAAQVD
Ga0190274_117114681	3300018476	Soil	MLLRSIRSRLIGLVVASVVPFTALIGVGLWNQWRTDQRNAVERSVSDARLIATQVDDHLNNLKSLM
Ga0066669_109802121	3300018482	Grasslands Soil	MMLRGIRSRLLGLMLATVIPFTALIGGGLWTQWRSDQATAAERAVGEARLLAAQVDDH
Ga0190264_113262731	3300019377	Soil	MMLLRSIRSRLIALVVATVLPFTALIGVGLWNQWRTDHTAAIRRAASEARLMAVQVDDHIGNLKNLLSGVSVAI
Ga0179594_103688241	3300020170	Vadose Zone Soil	MLGLVVATVIPFTALIGVGLWNQWRHDQAAAVQRAIDEARLTAAEVDDHIGNLESLLTG
Ga0210379_100981152	3300021081	Groundwater Sediment	MLLRSIRSRLIGLVVASVVPFTALIGVGLWNQWRSDQNAAFERAGNEARLIAGQVDDHIG
Ga0179596_100240221	3300021086	Vadose Zone Soil	MLLRSIRSRLLALVIATVSPFIALVGVGLWSQWRDDQSAAIKRAYSEAQLLAAQVDDH
Ga0210406_107604981	3300021168	Soil	MLRGIRTRLLGLVIATVVPFMALIGCGLWVQWRSDQVQAFRSALTEARLVAARVDDQIGDLDNLLVGLSQAVSIDAGDVQANDSV
Ga0210408_114781761	3300021178	Soil	MLLRSIRSRLLVLVLATVVPFVALVGIGLWSQWQEDQAAAIERALNEARLLAAQLD
Ga0210383_104896481	3300021407	Soil	MLRGIRTRLLGLVIATVVPFTALIGGGLWNQWRGDQSQAFRSALIEARLLAARVDDQI
Ga0210392_107706532	3300021475	Soil	MLLRSIRSRLLALVLAAVLPFVALVGAGLRTQWQEDQAAAVERALNEARLLAAQLDDHLSNL
(restricted) Ga0224722_12452852	3300021518	Freshwater Sediment	MLLSGIGPRLIGLVVGSAVPFAALIGFGLWSQWRNDQAAAVERALGEARLIASQVDDHFSNLR
Ga0126371_112041021	3300021560	Tropical Forest Soil	MLRGIRARLLGLVIATVVPFTALVGVGLWNQWRSDQAQAIRSALTEARLLAAQVDDQIGQFENLLVGLSAGLA
Ga0207700_105379412	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MLRSIRSRLLGLVVATVIPFTVLMGVGLWGRWHSDQAVAVQQAVNEARVLAAQVDDHLGKLESLL
Ga0207689_106003461	3300025942	Miscanthus Rhizosphere	MLLRGIRSRLLGLVLATVIPFTALLGGGLWTQWQNDRATASERAVAEARLLAAQVDDHLGNLD
Ga0209890_102365521	3300026291	Soil	MLRGIRTRLLGLVIATVVPFTALIGGGLWNQWRGDQAQAFRTALIEARLLAARVDDQITELNNLLVGLSQAVSTNPDD
Ga0257164_10319021	3300026497	Soil	MLLSSIRSRMLGLVVATVIPFTALIGVGLWNQWRHDQAAAVQRAIDEARLTAAEVDDHIGNLESLLTGLSR
Ga0209422_11302171	3300027629	Forest Soil	VIATVVPFTALIGGGLWNQWRGDQSQAFRSALIEARLLAARVDDQIAELDSLLIGLSQAV
Ga0209068_105624812	3300027894	Watersheds	MLLGSIRSRLLVLVLATVVPFLALVGAALWSQWREDETAAIERALNESKLLAAQLDDHISDLENLL
Ga0209006_103502322	3300027908	Forest Soil	MLRGIRTRLLGLVIATVVPFTALIGGGLWNQWRGDQSQAFRSALIEARLLAARVDDQISELDSLLIGLSQAVSASPDDIQANDAAL
Ga0137415_104328161	3300028536	Vadose Zone Soil	MLLGSIRSRLLGLVLATVVPFTALVGLGLWSQWRSDRTAAIQRAISEARLLAAQVDDHVANL
Ga0247824_102388682	3300028809	Soil	MLLRSIRSRLIALVVASVVPFTALIGVGLWNQWRTDHRAAIQRAINEARLIAGQV
Ga0307302_104513651	3300028814	Soil	MLGGIRTRLLGLVVATVVPFTALVGGGLFSQWKGDQAQAFKSALDEARLLAVQVDDEVGNLE
Ga0170824_1116926851	3300031231	Forest Soil	MLLRSIRSRLLVLVLATVVPFMALVGAGLWSQWRADQATAIERALNEARLLAAQ
Ga0307505_101433271	3300031455	Soil	MLLRSIRSRLIALVVASVVPFTALIGVGLWNQWRADQKAAIQRAIHEARLIAGQVDDHVGNLKNLLSGLSV
Ga0318541_100734233	3300031545	Soil	MLLRSIRSRLLALVVATVIPFTVLIGAGLWSQWQSDQAAAIRQAISEARVLAAQIDDHI
Ga0318538_104435711	3300031546	Soil	MLLRSIRSRLLALVVATVIPFTVLIGAGLWSQWQSDQAAAIRQAIGEARVLAAQIDDHIGDLENLLIGLG
Ga0318535_101816562	3300031764	Soil	MLRGIRTRLLGLVIATVVPFTALVGGGLWNQWRSDEAQAIKSALVEARLLAAQVDDQINQ
Ga0318546_104877902	3300031771	Soil	MLRSIRSRLIGLVLATVVPFLGLIGAGLWDQWRSDQAAAIARSVDEARLLAAQVD
Ga0318567_107546551	3300031821	Soil	MLLRSIRSRLLALVVATVIPFTVLIGAGLWSQWQSDQAAAIRQAISEARVL
Ga0310892_112149071	3300031858	Soil	MMLLRSIRSRLIALVVASAVPFTALVGVGLWNQWRADHKAAIQRATDESLVIADDVDDHIGNLKNLLSGLSVAVSWDPN
Ga0306925_107731162	3300031890	Soil	VLRSIRSRLLALVVATVIPFSFLIGGGLWSQWRSDQAAAVQQTIDEARLLAARVDDHIGNVENLL
Ga0318551_102295581	3300031896	Soil	MLRGIRTRLLGLVIATVVPFTALVGGGLWNQWRSDEAQAIKSALVEARLLAAQVD
Ga0318551_105160051	3300031896	Soil	MLRGIRARLLGLVIATVVPFTALVGVGLWNQWRSDQAQAIRSALTEARLLAAQVDDQIGQFENLLVGLSAGLAADPVDIKKNDAILRETK
Ga0310900_107167681	3300031908	Soil	MLLRSIRSRLIALVVASAVPFTALIGVGLWNQWRADHKAAIQRATDESLVIADDVDDHIGNLKNLL
Ga0306923_103495833	3300031910	Soil	MLLRSIRSRLLALVVATVIPFTVLIGAGLWSQWQSDQAAAIRQAIGEARVLAAQIDDHIGDLENLLIG
Ga0306923_123060751	3300031910	Soil	MLRGIRTRLLGLVIATVVPFTALVGGGLWNQWRSDEAQAIKSALVEARLLAAQVDDQINQFENL
Ga0306926_119240811	3300031954	Soil	MLRGIRARLLGLVIATVVPFTALVGVGLWNQWRSDQAQAIRSALTEARLLAAQVDDQIGQFENLLV
Ga0306926_129060211	3300031954	Soil	MLLRSIRSRLLALVVATVIPFTVLIGAGLWSQWQSDQAAAIRQAIGEARVLAAQIDDHI
Ga0318556_104099701	3300032043	Soil	MLRGIRTRLLGLVIATVVPFTALVGGGLWNQWRSDEAQAIKSALVEARLLAAQVDDQIN
Ga0306924_107720341	3300032076	Soil	MLRGIRSRLLALVLATVAPFVALIGAGLWIQWRTEHAAALERALSEARLLAAQLDDHIGN
Ga0311301_112565162	3300032160	Peatlands Soil	MLLHGIRSRLLGLVLATVVPFIALIGVGLWSQWQEQQAAAIERATSEARLLAAQVDDHIGNVDNLMMGLSEAVS
Ga0307472_1012824321	3300032205	Hardwood Forest Soil	MLGGIRTRLLGLVVATVVPFMAVIGIGLWSQWQGDQAQALKNALDEARLLA
Ga0306920_1031264681	3300032261	Soil	MLLRSIRSRLLALVVATVIPFTVLIGAGLWSQWQSDQAAAIRQAISEARVLAAQIDDHIGDLENLLIGLGEAVST
Ga0335076_112055851	3300032955	Soil	MLLRSIRSRMLGLVVATVVPFTALIGAGLWNQWRSDQAAAIDRALDEARLLAAQVDDHIGNVEN
Ga0372943_0523779_515_772	3300034268	Soil	MLRGIRTRLLGLVIATVVPFTALIGGGLWNQWRSDQAQAFRSALIEARLLAARVDDQITELDNLLIGLSQAVSTDPADMLTNDAML

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters